RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13966
(174 letters)
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 154 bits (391), Expect = 3e-48
Identities = 120/171 (70%), Positives = 145/171 (84%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GLTADARI+INRA++ECQSH+LTVEDPVT+EYITRYIA LKQ+YTQSNGRRPFGIS LI
Sbjct: 73 AGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALI 132
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
GFD+DG PRLYQT+PSG Y+ WKANA GR AK+VREFLEK Y E + T+ TIKL I+
Sbjct: 133 VGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIK 192
Query: 121 ALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKK 171
ALLEVVQSG KN+E+AVMR + +++L+ +IE+YV EIEKEKE+ +KK+
Sbjct: 193 ALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 134 bits (339), Expect = 2e-40
Identities = 95/168 (56%), Positives = 130/168 (77%), Gaps = 2/168 (1%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL AD+RILI +A++E QSH+LT+EDPVT+EY+TRY+AG++Q+YTQS G RPFG+S LI
Sbjct: 74 SGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLI 133
Query: 61 GGFD-YDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMT-TEKATIKLA 118
GFD D +P+LYQTEPSGIY W A GR++KTVREFLEK Y +E T + +KL
Sbjct: 134 AGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLT 193
Query: 119 IRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDE 166
+R+LLEVVQ+G KN+EI V++ + LS +I +YV +IE+EK+++
Sbjct: 194 VRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEKQEQ 241
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 132 bits (332), Expect = 2e-39
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GLTADAR+L N + EC + + P+ + + I Q TQ GRRP+G+ LI
Sbjct: 72 AGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLI 131
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G+D G P ++QT PS Y++ +A + G +++ R +LE+ +K +R
Sbjct: 132 AGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLR 190
Query: 121 ALLEVVQS----GQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKE 164
AL E + + KN+ I ++ + + ++ +E+ +
Sbjct: 191 ALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 238
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 128 bits (324), Expect = 3e-38
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 3/164 (1%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
TG+TAD+R + RA+ E + K + ++ + + IA + Q YTQ+ RP G ++
Sbjct: 80 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMIL 139
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D + P++Y+ +P+G Y +KA A G FLEK K + T + T++ AI
Sbjct: 140 IGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAIT 199
Query: 121 ALLEVVQS--GQKNLEIAVMRHGKP-VEMLSVAQIEEYVNEIEK 161
L V+ +E+ V+ P +L+ A+I+ ++ + +
Sbjct: 200 CLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAE 243
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 123 bits (310), Expect = 4e-36
Identities = 50/166 (30%), Positives = 99/166 (59%), Gaps = 10/166 (6%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG-----RRPFG 55
+GL ADA+ LI++A++E Q+H T + +T+E +T+ ++ L ++ + + RPFG
Sbjct: 72 SGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFG 131
Query: 56 ISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATI 115
++ L GG D G P+L+ +PSG + + A A G +++ + L++ Y + MT ++A I
Sbjct: 132 VALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYH-KSMTLKEA-I 188
Query: 116 KLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIEEYVNEI 159
K ++ L +V++ N+E+A ++ G+ M + ++EE + +I
Sbjct: 189 KSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 234
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 122 bits (307), Expect = 1e-35
Identities = 58/177 (32%), Positives = 100/177 (56%), Gaps = 8/177 (4%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
G+T+DA +L N ++ Q + L ++P+ E + + +KQ YTQ G+RPFG+S L
Sbjct: 76 AGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLY 135
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G+D +LYQ++PSG Y WKA G ++ L++ YK EMT + A + LAI+
Sbjct: 136 IGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSA-LALAIK 194
Query: 121 AL---LEVVQSGQKNLEIAVMRHGKP---VEMLSVAQIEEYVNEIEKEKEDEAEKKK 171
L ++V + + +EIA + + +L ++E+ + + E E+E +AE++K
Sbjct: 195 VLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHE-EEEAKAEREK 250
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 119 bits (300), Expect = 1e-34
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 6/170 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GL ADAR L + A+ E + + + L+++ +A YT + RPFG S ++
Sbjct: 78 AGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFML 137
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G + + +LY +PSG+ Y + A G++ + + +EK +EMT +K +
Sbjct: 138 GSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM-KEMTCRDI-VKEVAK 195
Query: 121 ALLEV---VQSGQKNLEIAVM-RHGKPVEMLSVAQIEEYVNEIEKEKEDE 166
+ V V+ LE++ + + I E + KE E
Sbjct: 196 IIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKE 245
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 119 bits (298), Expect = 2e-34
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 6/161 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GL DAR+L N + +C L + +E + QK TQS G RP+G+ LI
Sbjct: 74 AGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLI 133
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMT--TEKATIKLA 118
G+D G L + +PSG E A G ++ + +LE+ + IK
Sbjct: 134 IGYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAG 192
Query: 119 IRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEEYV 156
+ A+ + ++ NL IA++ P + + +Y+
Sbjct: 193 VEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 118 bits (296), Expect = 4e-34
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
G DAR RA+ E + + + + + +A L Q YTQ RP G+
Sbjct: 75 NGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTF 134
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYK-----SEEMTTEKATI 115
D + P +Y+T+P+G Y +KA ATG + + LE +K + + +
Sbjct: 135 VSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVV 194
Query: 116 KLAIRALLEVVQ--SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKE 164
+ AI +++ + + +LE+ V K LS IEE + I E++
Sbjct: 195 EFAITHMIDALGTEFSKNDLEVGVATKDKF-FTLSAENIEERLVAIA-EQD 243
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 115 bits (290), Expect = 2e-33
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+L++ A+I Q K+T V +E + + +A Q+YTQ G RP+G+S +
Sbjct: 67 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIF 126
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D G PRL+ +P+G E+KA A G V FLE+ YK E + L I+
Sbjct: 127 AGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKE--AVTLGIK 183
Query: 121 ALLEVVQSGQ--KNLEIAVMRHGKPVEMLSVAQIEEYV 156
AL ++ G+ K EIA + G + ++++++
Sbjct: 184 ALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 221
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 115 bits (289), Expect = 5e-33
Identities = 42/174 (24%), Positives = 88/174 (50%), Gaps = 10/174 (5%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG------RRPF 54
+GLTADAR +I A+ +H L ++ + +E +T+ + L ++ + RPF
Sbjct: 71 SGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPF 130
Query: 55 GISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKAT 114
G++ LI G D D +L+ EPSG +Y + A A G ++ + L + +T ++A
Sbjct: 131 GVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH-SSLTLKEA- 188
Query: 115 IKLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDE 166
L ++ L +V++ + N +++ + ++ + E + E+++++ E
Sbjct: 189 ELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEKEAAE 242
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 112 bits (281), Expect = 7e-32
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 10/170 (5%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL D R L+NR + E S K + P+ + + Q +T N RPFG+S +
Sbjct: 75 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIF 134
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYK--SEEMTTEKATIKLA 118
GG D +G LY EPSG Y+ +K ATG+ ++ + LEK E ++ +A +K A
Sbjct: 135 GGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREA-VKQA 192
Query: 119 IRALLEVVQSGQ---KNLEIAVM---RHGKPVEMLSVAQIEEYVNEIEKE 162
+ + + + LEI+ + + ++E ++ +KE
Sbjct: 193 AKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKE 242
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 110 bits (276), Expect = 5e-31
Identities = 59/172 (34%), Positives = 103/172 (59%), Gaps = 7/172 (4%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+LI+RA+IE Q ++LT + P+T++ + + I KQ+YTQ G RPFG+S LI
Sbjct: 76 SGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLI 135
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G + P+LY+T+PSG E+KA A G V EF EK Y+ ++++ + A + L +
Sbjct: 136 AG--VNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR-DDLSFDDA-MVLGLV 191
Query: 121 ALLEVV--QSGQKNLEIAVMRH-GKPVEMLSVAQIEEYVNEIEKEKEDEAEK 169
A+ + + +N+E+ ++ + + +S +++ YV + + +K
Sbjct: 192 AMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 243
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 109 bits (272), Expect = 2e-30
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 10/166 (6%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GLTADA ILIN A+I Q++ T + + +E + R ++ +KQ YTQ G RPFG+S +
Sbjct: 77 AGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIY 136
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G+D +LY + PSG Y WKA + G + + L+ YK ++M + A I+LA++
Sbjct: 137 AGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK-DDMKVDDA-IELALK 194
Query: 121 ALLEVVQSG---QKNLEIAVMRHGKP-----VEMLSVAQIEEYVNE 158
L + S LE A +R G ++ +I++ + +
Sbjct: 195 TLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK 240
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 107 bits (268), Expect = 8e-30
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 5/175 (2%)
Query: 2 GLTADARILINRAQIECQ-SHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
G+ D R+L+++++ S+K + + + +A + Q+ TQS G RPFG+S LI
Sbjct: 77 GMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLI 136
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D LYQ +PSG Y+ WKA A G+ + + FLEK + E + I +A+
Sbjct: 137 AGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDE--LELEDAIHIALL 194
Query: 121 ALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKKQK 173
L E V+ +E+A++ P + + K E + +
Sbjct: 195 TLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEA 249
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 96.7 bits (240), Expect = 7e-26
Identities = 54/161 (33%), Positives = 90/161 (55%), Gaps = 6/161 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+G+ D R+L++RA+ Q + L ++P+ + + +A + Q+YTQS G RPFG+S LI
Sbjct: 76 SGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLI 135
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G +G+P L+Q++PSG Y+ WKA A G++ + FLEK Y E + I AI
Sbjct: 136 CG-WNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN--EDLELEDAIHTAIL 192
Query: 121 ALLEVV--QSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEI 159
L E Q + N+E+ + L+ ++++Y+ I
Sbjct: 193 TLKESFEGQMTEDNIEVGICNE-AGFRRLTPTEVKDYLAAI 232
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 89.3 bits (221), Expect = 4e-23
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 18/172 (10%)
Query: 1 TGLTADARILINRAQIECQSHKLTVED-PVTLEYITRYIAGLKQKYTQSNGRRPFGISCL 59
G + L + + + VT + A + +P+ +
Sbjct: 57 VGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQT-LGTIFTEQPKPYEVEIC 115
Query: 60 IGGFD---YDGKPRLYQTEPSGIYYEWKANATGRS-AKTVREFLEKFYKSEEMTTEKATI 115
+ P+LY+ G + + + + + + Y+++ +A +
Sbjct: 116 VAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRAD--LDLEAAV 173
Query: 116 KLAIRALLEVVQS-------GQKNLEIAVMRHGKP---VEMLSVAQIEEYVN 157
+A+ AL + +LE+AV+ +P ++ +E+ V
Sbjct: 174 GIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVP 225
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 85.2 bits (210), Expect = 1e-21
Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 9/169 (5%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
G AD L+ R + + + D + A Q P+ + +I
Sbjct: 55 NGFAADGDALVKRFKNSVKWYHFDHNDK---KLSINSAARNIQHLLYGKRFFPYYVHTII 111
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D DGK +Y +P G Y + A G +A + FL+ + K+
Sbjct: 112 AGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKP 171
Query: 121 A----LLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKED 165
+ EV++ + + A RH + + L + + + + + KE +
Sbjct: 172 LKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTK--DGVRKEFYE 218
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 85.2 bits (210), Expect = 2e-21
Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 13/181 (7%)
Query: 1 TGLTADARILINRAQIECQSHKL-----TVEDPVTLEYITRYIAGLKQKYTQSNGRRPFG 55
+G +D + + + + E+ + YI Y+A Y + + P
Sbjct: 54 SGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLA--TVMYQRRSKMNPLW 111
Query: 56 ISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMT---TEK 112
+ ++ G +G L G+ Y ATG A L K E T +
Sbjct: 112 NAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQ 171
Query: 113 ATIKLAIRALLEVVQ---SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEK 169
+ + A+ + +N +A++ + Q+E + K+ + +
Sbjct: 172 VAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYGTQ 231
Query: 170 K 170
K
Sbjct: 232 K 232
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 79.4 bits (195), Expect = 1e-19
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G D Q Q + + + ++ + ++ ++ K +S RRP+ ++ LIG
Sbjct: 48 GEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRS--RRPYQVNVLIG 105
Query: 62 GFD-YDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKA--TIKLA 118
G+D KP LYQ + G E A G S L+ Y+ +MTTE+ +KL
Sbjct: 106 GYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR-PDMTTEEGLDLLKLC 164
Query: 119 IRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIE 153
++ L + + K + + ++ + + Q +
Sbjct: 165 VQELEKRMPMDFKGVIVKIVDKDG-IRQVDDFQAQ 198
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 77.9 bits (191), Expect = 5e-19
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GL DA++L+ + E + ++L + +E + + P+ + L+G
Sbjct: 47 GLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLL----SNMLNQVKYMPYMVQLLVG 102
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G D P ++ + +G E +TG + V LE Y E+MT ++ + L IRA
Sbjct: 103 G--IDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS-EKMTVDEG-VDLVIRA 158
Query: 122 LLEVVQ---SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIE 160
+ Q + +++AV+ L QIE + ++
Sbjct: 159 ISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLG 200
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 75.6 bits (185), Expect = 4e-18
Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 10/164 (6%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
G DA+ L +IE +++ E T+ I S P+ + LI
Sbjct: 46 AGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLT----SNLLNSYRYFPYLVQLLI 101
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
GG D +GK G E ATG + T LE + E+ ++A ++LA+R
Sbjct: 102 GGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT-PEIGVDEA-VELAVR 159
Query: 121 ALLEVVQ---SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEK 161
A+ ++ + +++ + + S ++E+ + + K
Sbjct: 160 AIYSAMKRDSASGDGIDVVKITEDE-FYQYSPEEVEQILAKFRK 202
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 75.6 bits (185), Expect = 5e-18
Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 12/167 (7%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
G AD + +C+ H+L ++ +++ ++ ++ L +Y + +I
Sbjct: 46 AGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMI 101
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G+ P +Y + G + G L+ YK +++ E A + L R
Sbjct: 102 CGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK-WDLSVEDA-LYLGKR 159
Query: 121 ALLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEK 163
++L SG ++ + + + E ++++E+
Sbjct: 160 SILAAAHRDAYSG-GSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEE 204
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 73.7 bits (180), Expect = 4e-17
Identities = 31/173 (17%), Positives = 57/173 (32%), Gaps = 16/173 (9%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G AD + + H L + + K + G ++
Sbjct: 47 GTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQM-----LKQHLFKYQGHIGAYLIVA 101
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G D G L+ G + G + LE +K + T++ IKLA A
Sbjct: 102 GVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQD--LTKEEAIKLASDA 158
Query: 122 LLEVVQ---SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKK 171
+ + N+++ VM GK E + Y+ +E++ ++ K
Sbjct: 159 IQAGIWNDLGSGSNVDVCVMEIGKDAEY-----LRNYLTPNVREEKQKSYKFP 206
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 67.4 bits (164), Expect = 5e-15
Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 13/161 (8%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+G AD + + + + H + + +P + + +Y + +I
Sbjct: 46 SGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-----DLMAGIII 100
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G+D ++Y G+ G + + +++ Y+ E ++
Sbjct: 101 AGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEE--CLQFTAN 158
Query: 121 ALLEVVQ----SGQKNLEIAVMRH-GKPVEMLSVAQIEEYV 156
AL ++ SG + +A + G ++L QI ++
Sbjct: 159 ALALAMERDGSSG-GVIRLAAIAESGVERQVLLGDQIPKFA 198
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 65.2 bits (158), Expect = 5e-14
Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 8/159 (5%)
Query: 1 TGLTADARILINRAQIECQSH-KLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCL 59
+G AD + L L + I ++ + Y++ + P + +
Sbjct: 54 SGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLT--RAMYSRRSKMNPLWNTMV 111
Query: 60 IGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAI 119
IGG+ DG+ L + G+ YE + ATG A + L + + + + ++ L
Sbjct: 112 IGGYA-DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVE 170
Query: 120 RALLEVVQ---SGQKNLEIAVMRHGKPVEMLSVAQIEEY 155
R + + + A + K VE+ E
Sbjct: 171 RCMRVLYYRDARSYNRFQTATVTE-KGVEIEGPLSTETN 208
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 63.6 bits (154), Expect = 2e-13
Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 19/177 (10%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
G AD + + H L+ + R + K R G + ++
Sbjct: 46 AGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRML-----KQMLFRYRGYIGAALVL 100
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
GG D G P LY P G + G + E ++ E+ L
Sbjct: 101 GGVDVTG-PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR--PDMEEEEAKNLVSE 157
Query: 121 ALLEVVQSGQ---KNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKKQKK 174
A+ + + N+++ V+ K ++ L + +K + + +K
Sbjct: 158 AIAAGIFNDLGSGSNIDLCVISKNK-LDFLRPYTVPN-------KKGTRLGRYRCEK 206
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 55.1 bits (132), Expect = 2e-10
Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 19/165 (11%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+G AD + + + Q + + P T + K + ++
Sbjct: 55 SGSAADTQAIADIVQYHLELYTSQYGTPSTETAASV------FKELCYENKDNLTAGIIV 108
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G+D K +Y G ++ G + + + +K ++ E M+ E+ +
Sbjct: 109 AGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR-ENMSKEET-VDFIKH 166
Query: 121 ALLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEK 161
+L + ++ SG + + V+ V ++ Y +E E+
Sbjct: 167 SLSQAIKWDGSSG-GVIRMVVLTAAG------VERLIFYPDEYEQ 204
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 70
Score = 24.7 bits (54), Expect = 2.4
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 91 SAKTVREFLEKFYKSEEMTTEKATIKLAIRALL 123
+ K + + + + Y + ++T K IK ++ L+
Sbjct: 34 TMKQICKKVYENYPTYDLTERKDFIKTTVKELI 66
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 26.1 bits (57), Expect = 2.4
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 95 VREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEE 154
V+ + +YK++E + ++ R E+ + G + + G P + SVAQ
Sbjct: 364 VQGIMGLYYKTDEAVRDDLELQSWCR---EITEIGLQGAQK----QGFPTSLQSVAQACH 416
Query: 155 YVNEI 159
+V
Sbjct: 417 FVTMC 421
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB
{Bacillus halodurans [TaxId: 86665]}
Length = 306
Score = 25.8 bits (55), Expect = 3.3
Identities = 3/32 (9%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 135 IAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDE 166
G + ++E ++++ + E
Sbjct: 278 ATAFSDG----FCTREEVERLQQQLQRTIKKE 305
>d2odka1 d.306.1.1 (A:1-51) Hypothetical protein NE2111
{Nitrosomonas europaea [TaxId: 915]}
Length = 51
Score = 23.0 bits (50), Expect = 6.3
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 122 LLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEY 155
E + + V R G +L I E+
Sbjct: 13 FSEFLDACITEGPQIVSRRGAEEAVLV--PIGEW 44
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 287
Score = 24.7 bits (54), Expect = 6.4
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 87 ATGRSAKTVREFLEKFYKSEE 107
A G + + +LE+F S
Sbjct: 54 AVG---RYIEHYLEEFLTSAN 71
>d1xn8a_ a.229.1.1 (A:) Hypothetical protein YqbG {Bacillus subtilis
[TaxId: 1423]}
Length = 131
Score = 24.1 bits (52), Expect = 7.8
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 72 YQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRAL 122
Y TE G Y + + V ++ + K + E K+ +R++
Sbjct: 81 YTTEKIGDYSYTLGDGSSLQKPDVYALIKDYVKPADPDLEGIEAKVRMRSI 131
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 129
Score = 23.9 bits (52), Expect = 9.3
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 83 WKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQ 127
++ + TG T+R + E+F + + + I+ LE+
Sbjct: 71 FRLSGTGSVGATIRIYFEQFEQQQIQHETATALANIIKLGLEISD 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.361
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 636,212
Number of extensions: 29375
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 50
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)