Query psy13967
Match_columns 379
No_of_seqs 111 out of 544
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 16:10:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2667|consensus 100.0 4E-101 9E-106 751.4 26.8 357 1-374 1-378 (379)
2 PF07970 COPIIcoated_ERV: Endo 100.0 3.8E-68 8.2E-73 495.5 18.6 202 151-356 1-222 (222)
3 PF13850 ERGIC_N: Endoplasmic 100.0 7.9E-33 1.7E-37 225.3 9.0 96 6-101 1-96 (96)
4 COG3531 Predicted protein-disu 48.5 6.1 0.00013 36.4 0.1 11 146-156 10-20 (212)
5 PF10399 UCR_Fe-S_N: Ubiquitin 27.3 14 0.0003 25.3 -0.9 31 328-358 8-38 (41)
6 PF14155 DUF4307: Domain of un 25.9 2E+02 0.0044 23.8 5.7 41 37-77 17-58 (112)
7 PF12421 DUF3672: Fibronectin 22.0 67 0.0015 27.7 2.2 24 201-224 30-53 (136)
8 KOG4085|consensus 21.3 49 0.0011 29.0 1.2 23 334-356 27-50 (175)
9 PF15631 Imm-NTF2-2: NTF2 fold 20.2 50 0.0011 25.0 0.9 25 202-226 30-54 (66)
10 PF04422 FrhB_FdhB_N: Coenzyme 17.7 56 0.0012 25.4 0.7 19 17-35 10-28 (82)
No 1
>KOG2667|consensus
Probab=100.00 E-value=4.3e-101 Score=751.42 Aligned_cols=357 Identities=42% Similarity=0.755 Sum_probs=324.9
Q ss_pred CcccccCccCcCCCCCCCCceeeccccceehhHHHHHHHHHHHHhhccccccceEEEEEEcCCCCCeeeEEEeEEeCCCc
Q psy13967 1 MVFSERLKGLDAFTKPYEDFHEKTVYGGAVTIVCWLFISYLICVDVCDYFQVSTTEELFVDSSRGSKLPIHLDIVVPTIS 80 (379)
Q Consensus 1 m~~~~~lk~~D~F~K~~~d~~~~T~~GgivSii~~~i~~~L~~~E~~~y~~~~~~~~l~VD~~~~~~l~In~dItfp~~p 80 (379)
|+.++.||+||||||++||++++|.+||++||+|.++|++||++|+..|+.+...+++.||.+++++|+||||||||+||
T Consensus 1 ~~~~~~lk~~Daf~K~~ed~~~~s~sGg~islis~l~i~~L~~~E~~~y~~~~~~~~~~vd~s~~e~l~in~DItfp~lp 80 (379)
T KOG2667|consen 1 MGILSKLKSFDAFPKTPEDYREKSLSGGLISLIAFLIILFLFFMELSQYLSVITSTELFVDDSRDEKLQINFDITFPALP 80 (379)
T ss_pred CchhhhhhhccccccchHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhhcceeEEEEeCCCCceeeeeeeEEeccCc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeeecCCcccccccccEEEEeecCCCCccc-CcchhhhhhhcccceeccCCCccCCCCCCCCCCCCcCCcC---
Q psy13967 81 CDYLALDAVDSSGEQHLHVEHNIYKRRLDLDGKPIQ-EPQKEVVNAVKKKKVTTENGTTTTELEDPNKCGSCYGAET--- 156 (379)
Q Consensus 81 C~~l~vDv~D~~G~~~~~i~~~i~k~rld~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~Cyga~~--- 156 (379)
|++|+|||+|.+|+.++++.++|+|.|+|. +++. +..+++....+ .. -+ ...+.+|+.||+++.
T Consensus 81 C~~lsVDv~D~sg~~~l~i~~~i~k~rl~~--~~i~~~~~~~~~~~~k-~~-------~p--~~~~~~c~~~~~~~~~~~ 148 (379)
T KOG2667|consen 81 CSILSVDVMDVSGEMVLDIDHLIYKLRLDP--EPIPLTIRRFDIFQHK-QT-------IP--TTDPILCGLCYGAEDFND 148 (379)
T ss_pred cceEEEEeeccccccccchhhhhhhcccCc--cccccchhhhcccccc-cc-------cC--CCCccchhhhhhhhcccc
Confidence 999999999999999999999999999999 4554 22233222211 11 11 113468999999987
Q ss_pred CCccccCchHHHHHHHHhcCCCCCCCcchhhhhccchhhhhcCCCCCCceEEEEEEEeeeeeeEEEecCCCcccCcceee
Q psy13967 157 ETRKCCNTCNEVKEAYRYKKWALPELDTIVQCKNEYSTEKLKNTFTEGCQIYGYLEVNRVSGSFHIAPGLSYSINHVHVH 236 (379)
Q Consensus 157 ~~~~cCntce~v~~ay~~~~~~~~~~~~~~qC~~~~~~~~~~~~~~egCrI~G~l~VnkV~GnfhI~~g~~~~~~~~h~h 236 (379)
...+|||+|++|++||+.++|++++.+.++||.++++.++.+.+.+|||||+|++.||||||||||+||++++..+.|.|
T Consensus 149 ~~~~~~~~~~~v~~a~~~~g~~~~~~~~~~q~~~~~~~~~~~~~~geGCRi~G~l~VNKVaGnfHia~g~~~~~~~~h~h 228 (379)
T KOG2667|consen 149 GDIDCCNLCEDVREAYRKAGWDFADEDLIDQCKNEGFTNKAAEQKGEGCRIYGQLEVNKVAGNFHIAPGKSSQHSNAHVH 228 (379)
T ss_pred ccchhhhcchHHHHHhhhccccccCccchhhhcccccccccCCCCCCceEEEEEEEEeeecceEEEccCCCccccccccc
Confidence 57789999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccEEEeEeeeccCCCCCCcCCCCCCCceeeeccCceeEEEEEEEEEEeEEcCCCeee------------
Q psy13967 237 DIQPYTSAAFNTTHHIRHLSFGIKLQDDDERRKPLDGTVAKAEEGASMFNYYIKIIPTIYERLDGSKL------------ 304 (379)
Q Consensus 237 d~~~~~~~~~N~SH~I~~lsFG~~~p~~~~~~~PLdg~~~~~~~~~~~~~YflkVVPT~y~~~~~~~~------------ 304 (379)
|.+.+ +.+||||+|||||||+.+| +..|||||+.++..++..+||||+|||||.|.+..+.++
T Consensus 229 d~~~~--~~~n~SH~InhLSFG~~~p---~~~nPLdG~~~~~~~~~~~~~Yf~KvVPT~y~~~~~~~~~T~QysVt~~~~ 303 (379)
T KOG2667|consen 229 DLSLL--DNLNFSHRINHLSFGEYIP---GIVNPLDGTNFIANEHLTTFQYFLKVVPTVYKYKSGRVIDTNQYSVTEYEY 303 (379)
T ss_pred hhhhc--ccCCceEEEeeeccCCCCc---ccccCCCCccccccCCccceeeEEEEcceEEEeecCceecceeeeeeeeEE
Confidence 98765 7899999999999999999 999999999999999999999999999999997776543
Q ss_pred ---C-CCCCCCceEEEEEEccceEEEEEeeecchHHHHHhHhhhccceeehhHHHHHHHHHHhhhee-eeeccce
Q psy13967 305 ---G-GGDGGMPGIFFSYELSPLMVKITEKSKSLGHLWTKIMCNISGTYITFMLVDALLHSCVKKIS-KVEIGGK 374 (379)
Q Consensus 305 ---~-~~~~~~PgI~F~Yd~SPi~V~v~e~~~~~~~flt~lcAIiGGvftv~glid~~i~~~~~~i~-k~~~gk~ 374 (379)
+ .+..++|||||+||+|||+|+++|+|.||+||||||||||||+||||||||+++|+++++++ |.++||+
T Consensus 304 ~~~~~~~~~~~PGifF~YelSPl~V~v~E~r~sf~~Flt~lCAIiGGvftvagiid~~~~~~~~~i~~k~~~gk~ 378 (379)
T KOG2667|consen 304 VLHSHRAKSGIPGIFFKYELSPLMVKVTEERQSFSHFLTRLCAIIGGVFTVAGILDSLLYHILELIKGKIALGKY 378 (379)
T ss_pred eccccccccCCCeEEEEEecCceEEEEEeccccHHHHHHHHHHHhcceeehHHHHHHHHHHHHHHHhcchhhhcc
Confidence 1 22348999999999999999999999999999999999999999999999999999999999 9999997
No 2
>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins. One of these proteins, PTX1 Q96RQ1 from SWISSPROT, is a homeodomain-containing transcription factor involved in regulating all pituitary hormone genes []. This protein is down regulated in prostate carcinoma []. The other protein, ERGIC-32 Q969X5 from SWISSPROT, is involved in protein transport from the ER to the Golgi [].
Probab=100.00 E-value=3.8e-68 Score=495.47 Aligned_cols=202 Identities=50% Similarity=0.985 Sum_probs=183.7
Q ss_pred CcCCcCCCccccCchHHHHHHHHhcCCCCCCCcchhhhhccchhhhhcC--CCCCCceEEEEEEEeeeeeeEEEecCCCc
Q psy13967 151 CYGAETETRKCCNTCNEVKEAYRYKKWALPELDTIVQCKNEYSTEKLKN--TFTEGCQIYGYLEVNRVSGSFHIAPGLSY 228 (379)
Q Consensus 151 Cyga~~~~~~cCntce~v~~ay~~~~~~~~~~~~~~qC~~~~~~~~~~~--~~~egCrI~G~l~VnkV~GnfhI~~g~~~ 228 (379)
||||+.++++||||||||++||+++||++|+++.++||+++ +.++++. ..+|||||+|++.||||+|||||+||+++
T Consensus 1 CYga~~~~~~CCnTC~~V~~ay~~~~w~~~~~~~~eQC~~~-~~~~~~~~~~~~egCri~G~l~VnkV~Gnfhi~~g~~~ 79 (222)
T PF07970_consen 1 CYGAETEEGKCCNTCEDVREAYRKKGWAFPDLENIEQCRRE-YVKKIKEQVNEGEGCRIYGSLEVNKVPGNFHIAPGRSF 79 (222)
T ss_pred CCCCCCCCCCcCcCHHHHHHHHHHhCCCCCCccccccccch-hhhhhhhhccCCCCCEEEEEEEEEEEEEEEEEEecchh
Confidence 99999888999999999999999999999999999999998 5454443 35799999999999999999999999999
Q ss_pred ccCcceeeccccCCCC-cccccEEEeEeeeccCCCCCCcCCCCCCCcee--eeccCceeEEEEEEEEEEeEEcCCCeee-
Q psy13967 229 SINHVHVHDIQPYTSA-AFNTTHHIRHLSFGIKLQDDDERRKPLDGTVA--KAEEGASMFNYYIKIIPTIYERLDGSKL- 304 (379)
Q Consensus 229 ~~~~~h~hd~~~~~~~-~~N~SH~I~~lsFG~~~p~~~~~~~PLdg~~~--~~~~~~~~~~YflkVVPT~y~~~~~~~~- 304 (379)
...+.|.||++.+... .+|+||+|||||||+++| +..|||||+.. .++++..+|+||||||||+|...++...
T Consensus 80 ~~~~~h~hd~~~~~~~~~~N~SH~I~~lsFG~~~~---~~~~PLdg~~~~~~~~~~~~~~~YflkvVPT~y~~~~~~~~~ 156 (222)
T PF07970_consen 80 QQDGGHIHDLSPFDDEPKFNFSHTINHLSFGEEIP---GIVNPLDGTQKIVQTDNGNYMYQYFLKVVPTTYEDLDGFSIE 156 (222)
T ss_pred ccCCcceeehhhhccccCCCCCeEEEEEEeccccc---cccccccCccccccCCCCceeEEEEEEEeeeeeEeccccccc
Confidence 9889999999988765 899999999999999999 99999999988 4677899999999999999999765422
Q ss_pred -----------C--CC-CCCCceEEEEEEccceEEEEEeeecchHHHHHhHhhhccceeehhHHHH
Q psy13967 305 -----------G--GG-DGGMPGIFFSYELSPLMVKITEKSKSLGHLWTKIMCNISGTYITFMLVD 356 (379)
Q Consensus 305 -----------~--~~-~~~~PgI~F~Yd~SPi~V~v~e~~~~~~~flt~lcAIiGGvftv~glid 356 (379)
. .. +.++|||||+||||||+|+++++|+||+||||+||||||||||++||||
T Consensus 157 t~qYsvt~~~~~~~~~~~~~~PGI~F~Yd~SPi~v~~~~~r~s~~~flt~lcaIiGGvftv~gliD 222 (222)
T PF07970_consen 157 TYQYSVTEHSRPLNGGSSGGLPGIFFKYDFSPIMVVITEDRKSFLHFLTRLCAIIGGVFTVAGLID 222 (222)
T ss_pred cccccceeeeeeccCCCCCCCceEEEEEeceeEEEEEEEecCCHHHHHHHHHHHhchHheEEEecC
Confidence 1 11 2689999999999999999999999999999999999999999999998
No 3
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=99.98 E-value=7.9e-33 Score=225.26 Aligned_cols=96 Identities=40% Similarity=0.696 Sum_probs=94.0
Q ss_pred cCccCcCCCCCCCCceeeccccceehhHHHHHHHHHHHHhhccccccceEEEEEEcCCCCCeeeEEEeEEeCCCccceee
Q psy13967 6 RLKGLDAFTKPYEDFHEKTVYGGAVTIVCWLFISYLICVDVCDYFQVSTTEELFVDSSRGSKLPIHLDIVVPTISCDYLA 85 (379)
Q Consensus 6 ~lk~~D~F~K~~~d~~~~T~~GgivSii~~~i~~~L~~~E~~~y~~~~~~~~l~VD~~~~~~l~In~dItfp~~pC~~l~ 85 (379)
+||+||+|||+++|++++|.+||++||+++++|++|+++|+..|+++++++++.||++.+++|+||||||||+|||++|+
T Consensus 1 ~lk~~D~F~K~~~~~~~~T~~Gg~iSi~~~~~~~~L~~~E~~~y~~~~~~~~~~VD~~~~~~l~in~ditf~~~pC~~l~ 80 (96)
T PF13850_consen 1 KLKRFDAFPKVPEDLREKTSSGGIISIITIVLIVILFISELYSYLSGEIKYQLVVDTSRDEKLQINFDITFPHMPCDFLS 80 (96)
T ss_pred CcceeccCCCCChHheeeccCChHHHHHHHHHHHHHHHHHHHHHcccceeEEEEEcCCCCceEEEEEEEEECCCccCeee
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCcccccccc
Q psy13967 86 LDAVDSSGEQHLHVEH 101 (379)
Q Consensus 86 vDv~D~~G~~~~~i~~ 101 (379)
+|++|++|++++|++|
T Consensus 81 vDv~D~~G~~~~dv~h 96 (96)
T PF13850_consen 81 VDVQDASGDHQLDVTH 96 (96)
T ss_pred eEeEccCCCeeccccC
Confidence 9999999999999875
No 4
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.54 E-value=6.1 Score=36.38 Aligned_cols=11 Identities=55% Similarity=1.237 Sum_probs=8.9
Q ss_pred CCCCCCcCCcC
Q psy13967 146 NKCGSCYGAET 156 (379)
Q Consensus 146 ~~c~~Cyga~~ 156 (379)
+-||||||+.+
T Consensus 10 PmCgWCyGa~P 20 (212)
T COG3531 10 PMCGWCYGAAP 20 (212)
T ss_pred cchhhhhCccH
Confidence 45999999864
No 5
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=27.31 E-value=14 Score=25.29 Aligned_cols=31 Identities=6% Similarity=0.146 Sum_probs=24.9
Q ss_pred EeeecchHHHHHhHhhhccceeehhHHHHHH
Q psy13967 328 TEKSKSLGHLWTKIMCNISGTYITFMLVDAL 358 (379)
Q Consensus 328 ~e~~~~~~~flt~lcAIiGGvftv~glid~~ 358 (379)
..+|+.|+...|...|-+|++.+..-+|+++
T Consensus 8 ~~~RRdFL~~at~~~gavG~~~~a~Pfv~s~ 38 (41)
T PF10399_consen 8 DPTRRDFLTIATSAVGAVGAAAAAWPFVSSM 38 (41)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4557889999999999999998888887764
No 6
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=25.86 E-value=2e+02 Score=23.80 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=23.5
Q ss_pred HHHHHHHHhhccccccceE-EEEEEcCCCCCeeeEEEeEEeC
Q psy13967 37 FISYLICVDVCDYFQVSTT-EELFVDSSRGSKLPIHLDIVVP 77 (379)
Q Consensus 37 i~~~L~~~E~~~y~~~~~~-~~l~VD~~~~~~l~In~dItfp 77 (379)
+++++.|.-+..+..+++. +...-+...++.+.|.|+++-|
T Consensus 17 ~~~~~~w~~~~~~~~~~v~~~~~gf~vv~d~~v~v~f~Vtr~ 58 (112)
T PF14155_consen 17 AGAVVAWFGYSQFGSPPVSAEVIGFEVVDDSTVEVTFDVTRD 58 (112)
T ss_pred HHHHHhHhhhhhccCCCceEEEEEEEECCCCEEEEEEEEEEC
Confidence 3333444333334444543 3344455556789999999986
No 7
>PF12421 DUF3672: Fibronectin type III protein ; InterPro: IPR021034 This entry represents a region of bacterial and viral proteins that are typically between 126 and 146 amino acids in length. The signature is found at the C terminus in association with PF09327 from PFAM and PF00041 from PFAM. There are two completely conserved G residues that may be functionally important. Many of the proteins in this entry are annotated as fibronectin type III however there is little accompanying literature to confirm this. It is also found in Host specificity protein J from Enterobacteria phage lambda (Bacteriophage lambda).
Probab=22.05 E-value=67 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred CCCCceEEEEEEEeeeeeeEEEec
Q psy13967 201 FTEGCQIYGYLEVNRVSGSFHIAP 224 (379)
Q Consensus 201 ~~egCrI~G~l~VnkV~GnfhI~~ 224 (379)
..|-|.+.|+++.+++-|.+--+-
T Consensus 30 ~~~~~~~~Gtv~A~~i~GDiv~~~ 53 (136)
T PF12421_consen 30 IAESCTFKGTVYANKIIGDIVKAY 53 (136)
T ss_pred EcccceEEeEEEehhEecceeEEE
Confidence 589999999999999999887653
No 8
>KOG4085|consensus
Probab=21.31 E-value=49 Score=28.96 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=18.1
Q ss_pred hHHHHHhHhhhccceee-hhHHHH
Q psy13967 334 LGHLWTKIMCNISGTYI-TFMLVD 356 (379)
Q Consensus 334 ~~~flt~lcAIiGGvft-v~glid 356 (379)
|+.|+-|+.||+|+++. ++|+++
T Consensus 27 w~r~l~rl~gilgaf~~~~fGvf~ 50 (175)
T KOG4085|consen 27 WYRWLCRLSGILGAFSCAIFGVFN 50 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999999987 344433
No 9
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=20.23 E-value=50 Score=24.98 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=20.3
Q ss_pred CCCceEEEEEEEeeeeeeEEEecCC
Q psy13967 202 TEGCQIYGYLEVNRVSGSFHIAPGL 226 (379)
Q Consensus 202 ~egCrI~G~l~VnkV~GnfhI~~g~ 226 (379)
++.=-|.|++..+-..|+|||.-++
T Consensus 30 ~~~WiV~Gtl~~~~~GGv~~I~I~K 54 (66)
T PF15631_consen 30 GDSWIVEGTLPPGMLGGVFYIEIRK 54 (66)
T ss_pred CCeEEEEeecCCCccCCeEEEEEEc
Confidence 4447899999888899999998654
No 10
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=17.68 E-value=56 Score=25.43 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=15.5
Q ss_pred CCCceeeccccceehhHHH
Q psy13967 17 YEDFHEKTVYGGAVTIVCW 35 (379)
Q Consensus 17 ~~d~~~~T~~GgivSii~~ 35 (379)
+++++.+..+||++|-+..
T Consensus 10 d~~ir~~~~sGG~vTaLl~ 28 (82)
T PF04422_consen 10 DEEIREKSQSGGVVTALLA 28 (82)
T ss_pred ChhhcccCCcHHHHHHHHH
Confidence 5678899999999987544
Done!