Query psy13967
Match_columns 379
No_of_seqs 111 out of 544
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 16:10:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oaz_A Thioredoxin 1; immune s 13.8 66 0.0023 25.0 1.4 30 144-173 29-58 (123)
2 2l9u_A Receptor tyrosine-prote 11.2 1.1E+02 0.0037 19.3 1.4 25 29-53 9-33 (40)
3 1jy2_N Fibrinogen alpha chain; 9.7 13 0.00045 25.6 -3.4 21 185-209 8-28 (53)
4 1brv_A Protein G, BRSV-G regio 7.6 1E+02 0.0035 19.0 0.3 10 74-83 9-18 (32)
5 2ks1_B Epidermal growth factor 7.0 1.3E+02 0.0044 19.9 0.6 18 342-359 15-32 (44)
6 1r7h_A NRDH-redoxin; thioredox 6.9 2.1E+02 0.0072 19.2 1.8 19 161-179 10-28 (75)
7 3lti_A DNA-directed RNA polyme 6.9 1.8E+02 0.0061 27.2 1.8 8 324-331 48-55 (296)
8 1h75_A Glutaredoxin-like prote 6.4 2.3E+02 0.0078 19.5 1.8 19 161-179 10-28 (81)
9 2rdd_B UPF0092 membrane protei 6.3 2.8E+02 0.0095 17.2 1.9 12 27-38 1-12 (37)
10 2lqo_A Putative glutaredoxin R 6.3 2.9E+02 0.01 20.5 2.4 19 161-179 13-31 (92)
No 1
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=13.80 E-value=66 Score=24.95 Aligned_cols=30 Identities=10% Similarity=0.219 Sum_probs=19.5
Q ss_pred CCCCCCCCcCCcCCCccccCchHHHHHHHH
Q psy13967 144 DPNKCGSCYGAETETRKCCNTCNEVKEAYR 173 (379)
Q Consensus 144 ~~~~c~~Cyga~~~~~~cCntce~v~~ay~ 173 (379)
..++|++|..........|+.|......+.
T Consensus 29 ~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~ 58 (123)
T 1oaz_A 29 WAEWCGPIEESDDRRYDLVGPCKMIAPILD 58 (123)
T ss_dssp ECSSCSCBSSSTTSCCSCCCCCCTTHHHHT
T ss_pred ECCCCccccccccccccCCCCcHHHHHHHH
Confidence 456899998776555555666666555443
No 2
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=11.19 E-value=1.1e+02 Score=19.29 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=20.0
Q ss_pred eehhHHHHHHHHHHHHhhccccccc
Q psy13967 29 AVTIVCWLFISYLICVDVCDYFQVS 53 (379)
Q Consensus 29 ivSii~~~i~~~L~~~E~~~y~~~~ 53 (379)
.+|+++.+.+++|++.-..-|++..
T Consensus 9 alt~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEccc
Confidence 3677888888899988888888764
No 3
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=9.67 E-value=13 Score=25.64 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=12.1
Q ss_pred hhhhhccchhhhhcCCCCCCceEEE
Q psy13967 185 IVQCKNEYSTEKLKNTFTEGCQIYG 209 (379)
Q Consensus 185 ~~qC~~~~~~~~~~~~~~egCrI~G 209 (379)
++.|..+.|..+ =+.|||+.|
T Consensus 8 wp~C~d~dWg~K----CPsGCRm~G 28 (53)
T 1jy2_N 8 WPFCSDEDWNTK----CPSGCRMKG 28 (53)
T ss_dssp CCBCCGGGBTTE----EECHHHHHH
T ss_pred CCcccccccCCC----CCCcccchh
Confidence 344666555333 267888766
No 4
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=7.59 E-value=1e+02 Score=18.96 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=7.3
Q ss_pred EEeCCCccce
Q psy13967 74 IVVPTISCDY 83 (379)
Q Consensus 74 Itfp~~pC~~ 83 (379)
=+||.+||..
T Consensus 9 q~l~~VPCsi 18 (32)
T 1brv_A 9 QTLPYVPCST 18 (32)
T ss_pred cccccccccc
Confidence 3678888875
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.97 E-value=1.3e+02 Score=19.89 Aligned_cols=18 Identities=0% Similarity=-0.001 Sum_probs=10.8
Q ss_pred hhhccceeehhHHHHHHH
Q psy13967 342 MCNISGTYITFMLVDALL 359 (379)
Q Consensus 342 cAIiGGvftv~glid~~i 359 (379)
.++|||++.++-++=.+.
T Consensus 15 ~gVVgGv~~~~ii~~~~~ 32 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIG 32 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHH
Confidence 366777777666554433
No 6
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=6.94 E-value=2.1e+02 Score=19.15 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.1
Q ss_pred ccCchHHHHHHHHhcCCCC
Q psy13967 161 CCNTCNEVKEAYRYKKWAL 179 (379)
Q Consensus 161 cCntce~v~~ay~~~~~~~ 179 (379)
||..|..++......+..+
T Consensus 10 ~C~~C~~~~~~l~~~~i~~ 28 (75)
T 1r7h_A 10 ACVQCTATKKALDRAGLAY 28 (75)
T ss_dssp TCHHHHHHHHHHHHTTCCC
T ss_pred CChHHHHHHHHHHHcCCCc
Confidence 7888999998888876544
No 7
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=6.90 E-value=1.8e+02 Score=27.22 Aligned_cols=8 Identities=25% Similarity=0.609 Sum_probs=3.2
Q ss_pred EEEEEeee
Q psy13967 324 MVKITEKS 331 (379)
Q Consensus 324 ~V~v~e~~ 331 (379)
-|.+...|
T Consensus 48 ~vrIdr~r 55 (296)
T 3lti_A 48 FVRIDRRR 55 (296)
T ss_dssp EEEETTCC
T ss_pred EEEEcCcc
Confidence 34444333
No 8
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=6.38 E-value=2.3e+02 Score=19.48 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=15.1
Q ss_pred ccCchHHHHHHHHhcCCCC
Q psy13967 161 CCNTCNEVKEAYRYKKWAL 179 (379)
Q Consensus 161 cCntce~v~~ay~~~~~~~ 179 (379)
||..|+.++....+.+..+
T Consensus 10 ~C~~C~~~~~~l~~~~i~~ 28 (81)
T 1h75_A 10 DCVQCHATKRAMENRGFDF 28 (81)
T ss_dssp TCHHHHHHHHHHHHTTCCC
T ss_pred CChhHHHHHHHHHHCCCCe
Confidence 7888999998888876544
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=6.30 E-value=2.8e+02 Score=17.22 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=5.5
Q ss_pred cceehhHHHHHH
Q psy13967 27 GGAVTIVCWLFI 38 (379)
Q Consensus 27 GgivSii~~~i~ 38 (379)
||+.+++-++++
T Consensus 1 ~~~~~~l~~v~~ 12 (37)
T 2rdd_B 1 SPMSLILMLVVF 12 (37)
T ss_dssp CCCHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 344455444433
No 10
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=6.26 E-value=2.9e+02 Score=20.52 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.2
Q ss_pred ccCchHHHHHHHHhcCCCC
Q psy13967 161 CCNTCNEVKEAYRYKKWAL 179 (379)
Q Consensus 161 cCntce~v~~ay~~~~~~~ 179 (379)
+|.-|..+++..+++|.++
T Consensus 13 ~Cp~C~~aK~~L~~~gi~y 31 (92)
T 2lqo_A 13 WCGYCLRLKTALTANRIAY 31 (92)
T ss_dssp TCSSHHHHHHHHHHTTCCC
T ss_pred CCHhHHHHHHHHHhcCCce
Confidence 6777888888888888765
Done!