RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13967
         (379 letters)



>d1jhsa_ d.107.1.1 (A:) Ran-binding protein mog1p {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 30.3 bits (68), Expect = 0.29
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 11/46 (23%)

Query: 22 EKTVYGGAVTIV---CWLFISYLICVDVCDYFQVSTTEELFVDSSR 64
          E  +YGGA+T V    +        +D     +V  T+ ++V+S R
Sbjct: 5  EVELYGGAITTVVPPGF--------IDASTLREVPDTQAVYVNSRR 42


>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits,
           N-terminal domain {Bordetella pertussis [TaxId: 520]}
          Length = 86

 Score = 25.7 bits (56), Expect = 3.4
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 274 TVAKAEEGASMFNYYIKIIP--TIYERLDGSKLGGGDGGM-----PGIFFSYE 319
           TVA+    A +  Y  +I P  +IY   DG+ LG   GG+     PG  F Y 
Sbjct: 28  TVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPPGAGFIYR 80


>d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits,
           N-terminal domain {Bordetella pertussis [TaxId: 520]}
          Length = 86

 Score = 25.7 bits (56), Expect = 3.4
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 274 TVAKAEEGASMFNYYIKIIP--TIYERLDGSKLGGGDGGM-----PGIFFSYE 319
           TVA+      +  Y   +    +I+   DG+ LGG  GG+     PG  F  +
Sbjct: 28  TVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPGGAFDLK 80


>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
           knowlesi [TaxId: 5850]}
          Length = 294

 Score = 26.9 bits (59), Expect = 3.8
 Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 11/58 (18%)

Query: 146 NKCGSCYGAETETRKCCNTCNEVKEAYRYKKWALPELDTIVQCKNEYSTEKLKNTFTE 203
            KC S              C+       Y +W       I + K ++  + L   F+ 
Sbjct: 198 EKCASKLYYNNMAICMLPLCH--DACKSYDQW-------ITRKKKQW--DVLSTKFSS 244


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,470,307
Number of extensions: 71469
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 7
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)