BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13969
(877 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 128/250 (51%), Gaps = 9/250 (3%)
Query: 154 RRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISFSPSDS 213
R AH +VR + +S +G + ++ +K W N ++T GH S+ G++FSP
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 214 KFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDP 273
A+ SDD TV++W+ + L GH + V+ V + P I S S D + VKLW+
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD--KTVKLWN- 126
Query: 274 KAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEAS 333
+ GQ L TL H S+V +A++ +G + +AS D +K+++ RN +QT GH
Sbjct: 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVW 184
Query: 334 AVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSN 393
VA+ P + +S D ++ W+ + ++ H + + +A+ P G +A+ S+
Sbjct: 185 GVAFSPDGQ-TIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 241
Query: 394 DHASKFWTRN 403
D K W RN
Sbjct: 242 DKTVKLWNRN 251
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 128/256 (50%), Gaps = 13/256 (5%)
Query: 149 WTPEGRRL----AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIR 204
W G+ L H +V + +S +G + ++ +K W N ++T GH S+R
Sbjct: 330 WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 389
Query: 205 GISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDN 264
G++FSP A+ SDD TV++W+ + L GH + V V + P I S S D
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD- 447
Query: 265 QQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQT 324
+ VKLW+ + GQ L TL H S+V +A++ +G + +AS D +K+++ RN +QT
Sbjct: 448 -KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN-GQLLQT 503
Query: 325 FRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPL 384
GH VA+ P + +S D ++ W+ + ++ H + +W +A+ P
Sbjct: 504 LTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPD 560
Query: 385 GHILATGSNDHASKFW 400
G +A+ S+D K W
Sbjct: 561 GQTIASASSDKTVKLW 576
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 13/259 (5%)
Query: 149 WTPEGRRL----AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIR 204
W G+ L H +VR + +S +G + ++ +K W N ++T GH S+
Sbjct: 207 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVN 266
Query: 205 GISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDN 264
G++F P A+ SDD TV++W+ + L GH + V V + P I S S D
Sbjct: 267 GVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD- 324
Query: 265 QQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQT 324
+ VKLW+ + GQ L TL H S+V +A++ +G + +AS D +K+++ RN +QT
Sbjct: 325 -KTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN-GQLLQT 380
Query: 325 FRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPL 384
GH VA+ P + +S D ++ W+ + ++ H + +W +A+ P
Sbjct: 381 LTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPD 437
Query: 385 GHILATGSNDHASKFWTRN 403
+A+ S+D K W RN
Sbjct: 438 DQTIASASDDKTVKLWNRN 456
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 129/259 (49%), Gaps = 13/259 (5%)
Query: 149 WTPEGRRL----AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIR 204
W G+ L H +V + +S +G + ++ +K W N +++T GH S+
Sbjct: 289 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW 348
Query: 205 GISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDN 264
G++FSP A+ SDD TV++W+ + L GH + V+ V + P I S S D
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD- 406
Query: 265 QQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQT 324
+ VKLW+ + GQ L TL H S+V +A++ + + +AS D +K+++ RN +QT
Sbjct: 407 -KTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RN-GQLLQT 462
Query: 325 FRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPL 384
GH VA+ P + +S D ++ W+ + ++ H + + +A+ P
Sbjct: 463 LTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPD 519
Query: 385 GHILATGSNDHASKFWTRN 403
G +A+ S+D K W RN
Sbjct: 520 GQTIASASDDKTVKLWNRN 538
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 127/259 (49%), Gaps = 13/259 (5%)
Query: 149 WTPEGRRL----AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIR 204
W G+ L H +V + + +G + ++ +K W N ++T GH S+
Sbjct: 248 WNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 307
Query: 205 GISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDN 264
G++FSP A+ SDD TV++W+ + L GH + V V + P I S S D
Sbjct: 308 GVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDD- 365
Query: 265 QQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQT 324
+ VKLW+ + GQ L TL H S+V +A++ +G + +AS D +K+++ RN +QT
Sbjct: 366 -KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN-GQLLQT 421
Query: 325 FRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPL 384
GH VA+ P + +S D ++ W+ + ++ H + + +A+ P
Sbjct: 422 LTGHSSSVWGVAFSPDDQ-TIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPD 478
Query: 385 GHILATGSNDHASKFWTRN 403
G +A+ S+D K W RN
Sbjct: 479 GQTIASASDDKTVKLWNRN 497
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 111/214 (51%), Gaps = 11/214 (5%)
Query: 149 WTPEGRRL----AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIR 204
W G+ L H +VR + +S +G + ++ +K W N ++T GH S+
Sbjct: 371 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 430
Query: 205 GISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDN 264
G++FSP D A+ SDD TV++W+ + L GH + V+ V + P I S S D
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD- 488
Query: 265 QQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQT 324
+ VKLW+ + GQ L TL H S+V +A++ +G + +AS D +K+++ RN +QT
Sbjct: 489 -KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN-GQLLQT 544
Query: 325 FRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWH 358
GH VA+ P + +S +D ++ W+
Sbjct: 545 LTGHSSSVWGVAFSPDGQ-TIASASSDKTVKLWN 577
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 33 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 88
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 149 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325
Query: 396 ASKFW 400
K W
Sbjct: 326 TIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 35 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 90
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 91 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 151 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 268
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 327
Query: 396 ASKFW 400
K W
Sbjct: 328 TIKLW 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 17 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 133 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 309
Query: 396 ASKFW 400
K W
Sbjct: 310 TIKLW 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 28 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 83
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 144 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 201
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 261
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 320
Query: 396 ASKFW 400
K W
Sbjct: 321 TIKLW 325
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 7 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 62
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 123 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 180
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 240
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 241 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 299
Query: 396 ASKFW 400
K W
Sbjct: 300 TIKLW 304
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 11 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 127 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303
Query: 396 ASKFW 400
K W
Sbjct: 304 TIKLW 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 17 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 133 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 309
Query: 396 ASKFW 400
K W
Sbjct: 310 TIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 16 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 71
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 72 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 132 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 189
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 249
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 250 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 308
Query: 396 ASKFW 400
K W
Sbjct: 309 TIKLW 313
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 11 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 127 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303
Query: 396 ASKFW 400
K W
Sbjct: 304 TIKLW 308
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 17 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 133 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 309
Query: 396 ASKFW 400
K W
Sbjct: 310 TIKLW 314
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 12 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 67
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 128 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 185
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 245
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 246 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 304
Query: 396 ASKFW 400
K W
Sbjct: 305 TIKLW 309
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 139/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 14 PNYALMFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 130 FD--ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Query: 396 ASKFW 400
K W
Sbjct: 307 TIKLW 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 10 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 65
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 126 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 243
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 244 SVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 302
Query: 396 ASKFW 400
K W
Sbjct: 303 TIKLW 307
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 139/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 14 PNYALMFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 130 FD--ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Query: 396 ASKFW 400
K W
Sbjct: 307 TIKLW 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 139/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ S IK W + KT GHK
Sbjct: 14 PNYALKFTLAG----HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 130 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Query: 396 ASKFW 400
K W
Sbjct: 307 TIKLW 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 14 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 130 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Query: 396 ASKFW 400
K +
Sbjct: 307 TIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 140/305 (45%), Gaps = 54/305 (17%)
Query: 143 PIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKE 201
P +++ +T G H AV + +S NG W+ +S IK W + KT GHK
Sbjct: 14 PNYALKFTLAG----HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
I +++S + + SDD T+++WD K L+GH V C +++P +LIVSGS
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------I 315
D + V++WD K G+ L TL AH V + +N++G+ +V++S D L +++D +
Sbjct: 130 FD--ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 316 RNLSSE------------------------------------VQTFRGHKKEASAVAWHP 339
+ L + ++T+ GHK E + +
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 340 QHEG--LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGS--NDH 395
G SG D + W++ KE+ Q H +++ + A HP +I+A+ + ND
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Query: 396 ASKFW 400
K +
Sbjct: 307 TIKLF 311
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 28/249 (11%)
Query: 174 MVTSDHQGYIKYWQSNMNNV-KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDF--Y 230
MV++ IK W + +T +GH +S++ ISF S A+CS D T+++WDF +
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 231 RCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVM 290
C + + GH +V V P IVS S+D + +K+W+ + G + T H+ V
Sbjct: 183 ECI--RTMHGHDHNVSSVSIMPNGDHIVSASRD--KTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 291 DLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG------- 343
+ NQ+G + + S D ++V+ + + + R H+ ++W P+
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-LREHRHVVECISWAPESSYSSISEAT 297
Query: 344 ------------LFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATG 391
SG D +I W V + + HDN + + +H G + +
Sbjct: 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSC 356
Query: 392 SNDHASKFW 400
++D + W
Sbjct: 357 ADDKTLRVW 365
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 27/226 (11%)
Query: 196 FQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKS 255
GH+ + + F P S + S+D T++VWD+ E+ L+GH V+ + +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 256 LIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDI 315
L+ S S D +KLWD + + + T+H H V ++ NG+ +V+ASRD +K++++
Sbjct: 164 LLASCSAD--MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 316 RNLSSEVQTFRGHKKEASAVAWHPQHEG-LFSSGGADGSIMFWHVGADKEVGCIPQAHDN 374
+ V+TF GH++ V P +G L +S D ++ W V A KE + H +
Sbjct: 222 QT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVW-VVATKECKAELREHRH 277
Query: 375 IIWTMAWHPL--------------------GHILATGSNDHASKFW 400
++ ++W P G L +GS D K W
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 61/221 (27%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMN-NVKTFQGHKESIRGISFSPSDSKF 215
HD V + NG +V++ IK W+ VKTF GH+E +R + + +
Sbjct: 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249
Query: 216 ATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKS-------------------- 255
A+CS+D TVRVW + LR H V+C+ W P S
Sbjct: 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309
Query: 256 LIVSGSKD----------------------------------------NQQPVKLWDPKA 275
++SGS+D + + +++WD K
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Query: 276 GQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIR 316
+ + TL+AH+ V L +++ ++VT S D +KV++ R
Sbjct: 370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 127 AVTTRFVKAATNKMRCPIFSMTWTPEGR--RLAHDCAVRHMVWSHNGLWMVTSDHQGYIK 184
V T+ KA + R + ++W PE ++ G ++++ IK
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 185 YWQ-SNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGA 243
W S + T GH +RG+ F +C+DD T+RVWD+ K L H
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 244 DVKCVDWHPYKSLIVSGSKDNQQPVKLWDPK 274
V +D+H +V+GS D Q VK+W+ +
Sbjct: 382 FVTSLDFHKTAPYVVTGSVD--QTVKVWECR 410
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 127/282 (45%), Gaps = 39/282 (13%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNN---VKTFQGHKESIRGISFSPSDS 213
H VR + WS G ++ ++ W+ N ++ V T +GH+ ++ ++++PS +
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 214 KFATCSDDGTVRVW-----DFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPV 268
ATCS D +V VW D Y C VL H DVK V WHP + L+ S S D+ V
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECV--SVLNSHTQDVKHVVWHPSQELLASASYDDT--V 174
Query: 269 KLWDPKAGQ--ALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE----- 321
KL+ + ATL H+STV LA++ +G L + S D ++++ +E
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC 234
Query: 322 ---------VQTFRG-HKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKE------- 364
+ T G H + +AW Q G ++ D +I + + +
Sbjct: 235 SGSDPSWKCICTLSGFHSRTIYDIAW-CQLTGALATACGDDAIRVFQEDPNSDPQQPTFS 293
Query: 365 -VGCIPQAHDNIIWTMAWHPLG-HILATGSNDHASKFWTRNR 404
+ QAH + +AW+P +LA+ S+D FW R
Sbjct: 294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 129/296 (43%), Gaps = 33/296 (11%)
Query: 153 GRRLAH-DCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNN--VKTF--QGHKESIRGIS 207
GR AH D + W+ G + + I+ W + ++ K+ +GH+ ++R ++
Sbjct: 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA 68
Query: 208 FSPSDSKFATCSDDGTVRVW----DFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKD 263
+SP + A+ S D T +W D + C L GH +VK V W P +L+ + S+D
Sbjct: 69 WSPCGNYLASASFDATTCIWKKNQDDFECV--TTLEGHENEVKSVAWAPSGNLLATCSRD 126
Query: 264 NQQPVKLW---DPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVF-DIRNLS 319
+ V +W + + ++ L++H V + W+ + L +AS D +K++ + +
Sbjct: 127 --KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184
Query: 320 SEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWH------------VGADKEVGC 367
T GH+ ++A+ P + L +S D ++ W G+D C
Sbjct: 185 VCCATLEGHESTVWSLAFDPSGQRL-ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243
Query: 368 IPQA---HDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLGDPMRDRYNQKGLAH 420
I H I+ +AW L LAT D A + + + DP + ++ H
Sbjct: 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 335 VAWHPQHEGLFSSGGADGSIMFWHVGADKEV--GCIPQAHDNIIWTMAWHPLGHILATGS 392
+AW+P L +S G D I W D + + + H + +AW P G+ LA+ S
Sbjct: 22 LAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 393 NDHASKFWTRNRLGDPMRDRYNQKGLAHCITGVYNEEMELNDSAVIPGMGL 443
D + W +N +D + C+T + E E+ A P L
Sbjct: 81 FDATTCIWKKN------QDDF------ECVTTLEGHENEVKSVAWAPSGNL 119
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 365 VGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+G +P D+ W +AW+P G +LA+ D + W
Sbjct: 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIW 43
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 37/279 (13%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQ-SNMNNVKTFQGHKESIRGISFSPSDSKF 215
+ D +R + +S +G ++ T I+ W N V QGH++ I + + PS K
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 216 ATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKS-LIVSGSKDNQQPVKLWDPK 274
+ S D TVR+WD R + + V V P I +GS D + V++WD +
Sbjct: 181 VSGSGDRTVRIWDL-RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD--RAVRVWDSE 237
Query: 275 AGQALATLHA-------HKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQ---- 323
G + L + HK +V + + ++G +V+ S D +K+++++N +++
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 324 -------TFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVG---CIPQAHD 373
T+ GHK +VA Q++ SG D ++FW DK+ G + Q H
Sbjct: 298 NSGTCEVTYIGHKDFVLSVA-TTQNDEYILSGSKDRGVLFW----DKKSGNPLLMLQGHR 352
Query: 374 NIIWTMA------WHPLGHILATGSNDHASKFWTRNRLG 406
N + ++A P ++ ATGS D ++ W ++
Sbjct: 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 21/224 (9%)
Query: 203 IRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSK 262
IR + FSP AT ++D +R+WD +L+GH D+ +D+ P +VSGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 263 DNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD------IR 316
D + V++WD + GQ TL +G ++ S D ++V+D +
Sbjct: 186 D--RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 243
Query: 317 NLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHV--GADKEVGCIPQA--- 371
L SE ++ GHK +V + + + SG D S+ W++ +K P +
Sbjct: 244 RLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302
Query: 372 ------HDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLGDPM 409
H + + ++A + +GS D FW + + G+P+
Sbjct: 303 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK-KSGNPL 345
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 15/214 (7%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPY 253
K+ H + SF+ SD + T S DGT +WD + GHGADV C+D P
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 254 KS--LIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLK 311
++ VSG D + V WD ++GQ + H+S V + + +G+ + S D +
Sbjct: 208 ETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265
Query: 312 VFDIRNLSSEVQTFRGHKKE-----ASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVG 366
++D+R EV + KE AS+V + LF +G D +I W V V
Sbjct: 266 LYDLR-ADREVAIY---SKESIIFGASSVDFSLSGRLLF-AGYNDYTINVWDVLKGSRVS 320
Query: 367 CIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
I H+N + T+ P G +GS DH + W
Sbjct: 321 -ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 105/265 (39%), Gaps = 55/265 (20%)
Query: 187 QSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVK 246
Q M +T +GH + + + + + S DG V VWD + +E + V
Sbjct: 51 QFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM 110
Query: 247 CVDWHPYKSLIVSGSKDNQQPV-------------------------------------- 268
+ P I G DN+ V
Sbjct: 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 269 --------KLWDPKAGQALATLHAHKSTV--MDLAWNQNGNWLVTASRDHLLKVFDIRNL 318
LWD ++GQ L + H H + V +DLA ++ GN V+ D V+D+R+
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS- 229
Query: 319 SSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIW- 377
VQ F H+ + ++V ++P + F+SG D + + + AD+EV + ++II+
Sbjct: 230 GQCVQAFETHESDVNSVRYYPSGDA-FASGSDDATCRLYDLRADREVAIYSK--ESIIFG 286
Query: 378 --TMAWHPLGHILATGSNDHASKFW 400
++ + G +L G ND+ W
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVW 311
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 193 VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTE------EKVLRGHGADVK 246
V+ F+ H+ + + + PS FA+ SDD T R++D E E ++ G +
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS--- 289
Query: 247 CVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASR 306
VD+ L+ +G N + +WD G ++ L H++ V L + +G + S
Sbjct: 290 -VDFSLSGRLLFAGY--NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346
Query: 307 DHLLKV 312
DH L+V
Sbjct: 347 DHTLRV 352
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 196 FQGHKESIRGISFSPS-DSKFATCSDDGTVRVWDF------YRCTEEK-VLRGHGADVKC 247
+GH++ G+S++P+ + + SDD T+ +WD +R + K + GH A V+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 248 VDWHP-YKSLIVSGSKDNQQPVKLWDPK---AGQALATLHAHKSTVMDLAWNQNGNW-LV 302
V WH ++SL GS + Q + +WD + + T+ AH + V L++N + L
Sbjct: 237 VAWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD 362
T S D + ++D+RNL ++ +F HK E V W P +E + +S G D + W +
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Query: 363 KEVGCIPQAHD 373
E A D
Sbjct: 355 GEEQSTEDAED 365
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 22/185 (11%)
Query: 196 FQGHKESIRGISFSP-SDSKFATCSDDGTVRVWDFYRCTEEK---VLRGHGADVKCVDWH 251
F GH + +++ +S F + +DD + +WD K + H A+V C+ ++
Sbjct: 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 252 PYKSLIV-SGSKDNQQPVKLWDPKAGQ-ALATLHAHKSTVMDLAWN-QNGNWLVTASRDH 308
PY I+ +GS D + V LWD + + L + +HK + + W+ N L ++ D
Sbjct: 287 PYSEFILATGSAD--KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344
Query: 309 LLKVFDIRNLSSEVQT-------------FRGHKKEASAVAWHPQHEGLFSSGGADGSIM 355
L V+D+ + E T GH + S +W+P + S D +
Sbjct: 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
Query: 356 FWHVG 360
W +
Sbjct: 405 VWQMA 409
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 35/216 (16%)
Query: 132 FVKAATNKMRCPIFSMTWTPEGRRL--------AHDCAVRHMVWS--HNGLWMVTSDHQG 181
++ +A++ ++ + TP+ R+ H V + W H L+ +D Q
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 182 YIKYWQSNMNNVK----TFQGHKESIRGISFSP-SDSKFATCSDDGTVRVWDFYRCTEEK 236
+ W + NN T H + +SF+P S+ AT S D TV +WD R + K
Sbjct: 256 LM-IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-RNLKLK 313
Query: 237 V--LRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWD-PKAGQALATLHA--------- 284
+ H ++ V W P+ I++ S +++ + +WD K G+ +T A
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLF 372
Query: 285 ----HKSTVMDLAWNQNGNWLV-TASRDHLLKVFDI 315
H + + D +WN N W++ + S D++++V+ +
Sbjct: 373 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 196 FQGHKESIRGISFSPS-DSKFATCSDDGTVRVWDF------YRCTEEK-VLRGHGADVKC 247
+GH++ G+S++P+ + + SDD T+ +WD +R + K + GH A V+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 248 VDWHP-YKSLIVSGSKDNQQPVKLWDPK---AGQALATLHAHKSTVMDLAWNQNGNW-LV 302
V WH ++SL GS + Q + +WD + + T+ AH + V L++N + L
Sbjct: 239 VAWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD 362
T S D + ++D+RNL ++ +F HK E V W P +E + +S G D + W +
Sbjct: 297 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 356
Query: 363 KEVGCIPQAHD 373
E A D
Sbjct: 357 GEEQSTEDAED 367
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 22/185 (11%)
Query: 196 FQGHKESIRGISFSP-SDSKFATCSDDGTVRVWDFYRCTEEK---VLRGHGADVKCVDWH 251
F GH + +++ +S F + +DD + +WD K + H A+V C+ ++
Sbjct: 229 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 252 PYKSLIV-SGSKDNQQPVKLWDPKAGQ-ALATLHAHKSTVMDLAWN-QNGNWLVTASRDH 308
PY I+ +GS D + V LWD + + L + +HK + + W+ N L ++ D
Sbjct: 289 PYSEFILATGSAD--KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 346
Query: 309 LLKVFDIRNLSSEVQT-------------FRGHKKEASAVAWHPQHEGLFSSGGADGSIM 355
L V+D+ + E T GH + S +W+P + S D +
Sbjct: 347 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406
Query: 356 FWHVG 360
W +
Sbjct: 407 VWQMA 411
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 35/216 (16%)
Query: 132 FVKAATNKMRCPIFSMTWTPEGRRL--------AHDCAVRHMVWS--HNGLWMVTSDHQG 181
++ +A++ ++ + TP+ R+ H V + W H L+ +D Q
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 182 YIKYWQSNMNNVK----TFQGHKESIRGISFSP-SDSKFATCSDDGTVRVWDFYRCTEEK 236
+ W + NN T H + +SF+P S+ AT S D TV +WD R + K
Sbjct: 258 LM-IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-RNLKLK 315
Query: 237 V--LRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWD-PKAGQALATLHA--------- 284
+ H ++ V W P+ I++ S +++ + +WD K G+ +T A
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLF 374
Query: 285 ----HKSTVMDLAWNQNGNWLV-TASRDHLLKVFDI 315
H + + D +WN N W++ + S D++++V+ +
Sbjct: 375 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 196 FQGHKESIRGISFSPS-DSKFATCSDDGTVRVWDF------YRCTEEK-VLRGHGADVKC 247
+GH++ G+S++P+ + + SDD T+ +WD +R + K + GH A V+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 248 VDWHP-YKSLIVSGSKDNQQPVKLWDPK---AGQALATLHAHKSTVMDLAWNQNGNW-LV 302
V WH ++SL GS + Q + +WD + + T+ AH + V L++N + L
Sbjct: 241 VAWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD 362
T S D + ++D+RNL ++ +F HK E V W P +E + +S G D + W +
Sbjct: 299 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 358
Query: 363 KEVGCIPQAHD 373
E A D
Sbjct: 359 GEEQSTEDAED 369
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 22/185 (11%)
Query: 196 FQGHKESIRGISFSP-SDSKFATCSDDGTVRVWDFYRCTEEK---VLRGHGADVKCVDWH 251
F GH + +++ +S F + +DD + +WD K + H A+V C+ ++
Sbjct: 231 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 252 PYKSLIV-SGSKDNQQPVKLWDPKAGQ-ALATLHAHKSTVMDLAWN-QNGNWLVTASRDH 308
PY I+ +GS D + V LWD + + L + +HK + + W+ N L ++ D
Sbjct: 291 PYSEFILATGSAD--KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 348
Query: 309 LLKVFDIRNLSSEVQT-------------FRGHKKEASAVAWHPQHEGLFSSGGADGSIM 355
L V+D+ + E T GH + S +W+P + S D +
Sbjct: 349 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408
Query: 356 FWHVG 360
W +
Sbjct: 409 VWQMA 413
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 35/216 (16%)
Query: 132 FVKAATNKMRCPIFSMTWTPEGRRL--------AHDCAVRHMVWS--HNGLWMVTSDHQG 181
++ +A++ ++ + TP+ R+ H V + W H L+ +D Q
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 182 YIKYWQSNMNNVK----TFQGHKESIRGISFSP-SDSKFATCSDDGTVRVWDFYRCTEEK 236
+ W + NN T H + +SF+P S+ AT S D TV +WD R + K
Sbjct: 260 LM-IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-RNLKLK 317
Query: 237 V--LRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWD-PKAGQALATLHA--------- 284
+ H ++ V W P+ I++ S +++ + +WD K G+ +T A
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLF 376
Query: 285 ----HKSTVMDLAWNQNGNWLV-TASRDHLLKVFDI 315
H + + D +WN N W++ + S D++++V+ +
Sbjct: 377 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 196 FQGHKESIRGISFSPSDS-KFATCSDDGTVRVWDFYRCTEE-------KVLRGHGADVKC 247
+GH++ G+S++P+ S + SDD T+ +WD +E + GH A V+
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 248 VDWHP-YKSLIVSGSKDNQQPVKLWDPKAGQALATLH---AHKSTVMDLAWNQNGNW-LV 302
V WH ++SL GS + Q + +WD ++ H AH + V L++N + L
Sbjct: 233 VSWHLLHESLF--GSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA 290
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFW 357
T S D + ++D+RNL ++ +F HK E V W P +E + +S G D + W
Sbjct: 291 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 22/185 (11%)
Query: 196 FQGHKESIRGISFSP-SDSKFATCSDDGTVRVWDFYRCTEEK---VLRGHGADVKCVDWH 251
F GH + +S+ +S F + +DD + +WD K + H A+V C+ ++
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 252 PYKSLIV-SGSKDNQQPVKLWDPKAGQ-ALATLHAHKSTVMDLAWN-QNGNWLVTASRDH 308
PY I+ +GS D + V LWD + + L + +HK + + W+ N L ++ D
Sbjct: 283 PYSEFILATGSAD--KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 340
Query: 309 LLKVFDIRNLSSE-------------VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIM 355
L V+D+ + E + GH + S +W+P + S D +
Sbjct: 341 RLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400
Query: 356 FWHVG 360
W +
Sbjct: 401 VWQMA 405
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 193 VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHP 252
V++F+GH ++ + + + + S D T+R+WD + GH +DV VD
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 253 YKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDL------AWNQNGNWLVTASR 306
S+I+SGS+D + +K+W K GQ LATL H V + + + +++A
Sbjct: 118 KASMIISGSRD--KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 307 DHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVG 366
D ++K +++ E F GH + + P L +S G DG IM W++ A K +
Sbjct: 175 DKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMY 232
Query: 367 CIPQAHDNIIWTMAWHPLGHILATGS 392
+ A D + ++A+ P + LA +
Sbjct: 233 TLS-AQDEVF-SLAFSPNRYWLAAAT 256
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 16/217 (7%)
Query: 195 TFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEE-----KVLRGHGADVKCV 248
T +GH + ++ S + + S D T+ W ++ + +GH V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 249 DWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDH 308
+ +S S D + ++LWD G+ HKS VM + ++ + +++ SRD
Sbjct: 72 TLTADGAYALSASWD--KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 309 LLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-----LFSSGGADGSIMFWHVGADK 363
+KV+ I+ + T GH S V P + S G D + W++
Sbjct: 130 TIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QF 186
Query: 364 EVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
++ H++ I T+ P G ++A+ D W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 55/194 (28%)
Query: 174 MVTSDHQGYIKYWQSNMNNVKT-FQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRC 232
++++ + +K W N ++ F GH +I ++ SP + A+ DG + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL--- 225
Query: 233 TEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDL 292
A +A+ TL A V L
Sbjct: 226 -----------------------------------------AAKKAMYTLSAQDE-VFSL 243
Query: 293 AWNQNGNWLVTASRDHLLKVFDI--RNLSSEVQ-TFRGHKKEAS----AVAWHPQHEGLF 345
A++ N WL A+ +KVF + + L +++ F G+ K A ++AW + LF
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 346 SSGGADGSIMFWHV 359
+G D I W V
Sbjct: 303 -AGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 193 VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHP 252
V++F+GH ++ + + + + S D T+R+WD + GH +DV VD
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 253 YKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDL------AWNQNGNWLVTASR 306
S+I+SGS+D + +K+W K GQ LATL H V + + + +++A
Sbjct: 118 KASMIISGSRD--KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 307 DHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVG 366
D ++K +++ E F GH + + P L +S G DG IM W++ A K +
Sbjct: 175 DKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMY 232
Query: 367 CIPQAHDNIIWTMAWHPLGHILATGS 392
+ A D + ++A+ P + LA +
Sbjct: 233 TL-SAQDEVF-SLAFSPNRYWLAAAT 256
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 16/217 (7%)
Query: 195 TFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEE-----KVLRGHGADVKCV 248
T +GH + ++ S + + S D T+ W ++ + +GH V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 249 DWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDH 308
+ +S S D + ++LWD G+ HKS VM + ++ + +++ SRD
Sbjct: 72 TLTADGAYALSASWD--KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 309 LLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-----LFSSGGADGSIMFWHVGADK 363
+KV+ I+ + T GH S V P + S G D + W++
Sbjct: 130 TIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QF 186
Query: 364 EVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
++ H++ I T+ P G ++A+ D W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 55/193 (28%)
Query: 174 MVTSDHQGYIKYWQSNMNNVKT-FQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRC 232
++++ + +K W N ++ F GH +I ++ SP + A+ DG + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL--- 225
Query: 233 TEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDL 292
A +A+ TL A V L
Sbjct: 226 -----------------------------------------AAKKAMYTLSAQDE-VFSL 243
Query: 293 AWNQNGNWLVTASRDHLLKVFDI--RNLSSEVQ-TFRGHKKEAS----AVAWHPQHEGLF 345
A++ N WL A+ +KVF + + L +++ F G+ K A ++AW + LF
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 346 SSGGADGSIMFWH 358
+G D I W
Sbjct: 303 -AGYTDNVIRVWQ 314
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 193 VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHP 252
V++F+GH ++ + + + + S D T+R+WD + GH +DV VD
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 253 YKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDL------AWNQNGNWLVTASR 306
S+I+SGS+D + +K+W K GQ LATL H V + + + +++A
Sbjct: 118 KASMIISGSRD--KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 307 DHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVG 366
D ++K +++ E F GH + + P L +S G DG IM W++ A K +
Sbjct: 175 DKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMY 232
Query: 367 CIPQAHDNIIWTMAWHPLGHILATGS 392
+ A D + ++A+ P + LA +
Sbjct: 233 TLS-AQDEVF-SLAFSPNRYWLAAAT 256
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 16/217 (7%)
Query: 195 TFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEE-----KVLRGHGADVKCV 248
T +GH + ++ S + + S D T+ W ++ + +GH V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 249 DWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDH 308
+ +S S D + ++LWD G+ HKS VM + ++ + +++ SRD
Sbjct: 72 TLTADGAYALSASWD--KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 309 LLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-----LFSSGGADGSIMFWHVGADK 363
+KV+ I+ + T GH S V P + S G D + W++
Sbjct: 130 TIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QF 186
Query: 364 EVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
++ H++ I T+ P G ++A+ D W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 55/194 (28%)
Query: 174 MVTSDHQGYIKYWQSNMNNVKT-FQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRC 232
++++ + +K W N ++ F GH +I ++ SP + A+ DG + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL--- 225
Query: 233 TEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDL 292
A +A+ TL A V L
Sbjct: 226 -----------------------------------------AAKKAMYTLSAQDE-VFSL 243
Query: 293 AWNQNGNWLVTASRDHLLKVFDI--RNLSSEVQ-TFRGHKKEAS----AVAWHPQHEGLF 345
A++ N WL A+ +KVF + + L +++ F G+ K A ++AW + LF
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 346 SSGGADGSIMFWHV 359
+G D I W V
Sbjct: 303 -AGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 193 VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHP 252
V++F+GH ++ + + + + S D T+R+WD + GH +DV VD
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 253 YKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDL------AWNQNGNWLVTASR 306
S+I+SGS+D + +K+W K GQ LATL H V + + + +++A
Sbjct: 112 KASMIISGSRD--KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 168
Query: 307 DHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVG 366
D ++K +++ E F GH + + P L +S G DG IM W++ A K +
Sbjct: 169 DKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMY 226
Query: 367 CIPQAHDNIIWTMAWHPLGHILATGS 392
+ A D + ++A+ P + LA +
Sbjct: 227 TL-SAQDEVF-SLAFSPNRYWLAAAT 250
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 16/217 (7%)
Query: 195 TFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEE-----KVLRGHGADVKCV 248
T +GH + ++ S + + S D T+ W ++ + +GH V+
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 249 DWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDH 308
+ +S S D + ++LWD G+ HKS VM + ++ + +++ SRD
Sbjct: 66 TLTADGAYALSASWD--KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 123
Query: 309 LLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-----LFSSGGADGSIMFWHVGADK 363
+KV+ I+ + T GH S V P + S G D + W++
Sbjct: 124 TIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QF 180
Query: 364 EVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
++ H++ I T+ P G ++A+ D W
Sbjct: 181 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 55/194 (28%)
Query: 174 MVTSDHQGYIKYWQSNMNNVKT-FQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRC 232
++++ + +K W N ++ F GH +I ++ SP + A+ DG + +W+
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL--- 219
Query: 233 TEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDL 292
A +A+ TL A V L
Sbjct: 220 -----------------------------------------AAKKAMYTLSAQDE-VFSL 237
Query: 293 AWNQNGNWLVTASRDHLLKVFDI--RNLSSEVQ-TFRGHKKEAS----AVAWHPQHEGLF 345
A++ N WL A+ +KVF + + L +++ F G+ K A ++AW + LF
Sbjct: 238 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 296
Query: 346 SSGGADGSIMFWHV 359
+G D I W V
Sbjct: 297 -AGYTDNVIRVWQV 309
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 193 VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHP 252
V++F+GH ++ + + + + S D T+R+WD + GH +DV VD
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 253 YKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDL------AWNQNGNWLVTASR 306
S+I+SGS+D + +K+W K GQ LATL H V + + + +++A
Sbjct: 118 KASMIISGSRD--KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 307 DHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVG 366
D ++K +++ E F GH + + P L +S G DG IM W++ A K +
Sbjct: 175 DKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMY 232
Query: 367 CIPQAHDNIIWTMAWHPLGHILATGS 392
+ A D + ++A+ P + LA +
Sbjct: 233 TLS-AQDEVF-SLAFSPNRYWLAAAT 256
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 16/217 (7%)
Query: 195 TFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEE-----KVLRGHGADVKCV 248
T +GH + ++ S + + S D T+ W ++ + +GH V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 249 DWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDH 308
+ +S S D + ++LWD G+ HKS VM + ++ + +++ SRD
Sbjct: 72 TLTADGAYALSASWD--KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 309 LLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-----LFSSGGADGSIMFWHVGADK 363
+KV+ I+ + T GH S V P + S G D + W++
Sbjct: 130 TIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QF 186
Query: 364 EVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
++ H++ I T+ P G ++A+ D W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 174 MVTSDHQGYIKYWQSNMNNVKT-FQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRC 232
++++ + +K W N ++ F GH +I ++ SP + A+ DG + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 233 TEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPK----------AG-QALAT 281
L +V + + P + + + + + L DP+ AG A A
Sbjct: 229 KAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSL-DPQYLVDDLRPEFAGYSAAAE 286
Query: 282 LHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDI 315
HA + LAW+ +G L D++++V+ +
Sbjct: 287 PHA-----VSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 25/251 (9%)
Query: 161 AVRHMVWSHNGLW--------MVTSDHQGYIKYWQSNMNN-VKTFQGHKESIRGISFSPS 211
+R +V G+W +++ +K W + + T GH ++R +
Sbjct: 151 CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-- 208
Query: 212 DSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLW 271
+ + + S D T+RVWD VL GH A V+CV + + +VSG+ D VK+W
Sbjct: 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFM--VKVW 264
Query: 272 DPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKE 331
DP+ L TL H + V L + +G +V+ S D ++V+D+ + + T GH+
Sbjct: 265 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSL 321
Query: 332 ASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCI--PQAHDNIIWTMAWHPLGHILA 389
S + + + SG AD ++ W + + + + P H + + + ++ + +
Sbjct: 322 TSGM---ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVI 376
Query: 390 TGSNDHASKFW 400
T S+D K W
Sbjct: 377 TSSDDGTVKLW 387
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 110/252 (43%), Gaps = 33/252 (13%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPY 253
K +GH + + ++ + SDD T++VW + L GH V W
Sbjct: 112 KVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQ 166
Query: 254 --KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLK 311
++I+SGS D + +K+W+ + G+ + TL+ H STV + ++ +V+ SRD L+
Sbjct: 167 MRDNIIISGSTD--RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLR 222
Query: 312 VFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-LFSSGGADGSIMFWHVGADKEVGCIPQ 370
V+DI + GH V Q++G SG D + W + + + Q
Sbjct: 223 VWDIET-GQCLHVLMGHVAAVRCV----QYDGRRVVSGAYDFMVKVWDPETETCLHTL-Q 276
Query: 371 AHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLGDPMRDRYNQKGLAHCITG--VYNE 428
H N ++++ + + H+++ GS D + + W H +TG
Sbjct: 277 GHTNRVYSLQFDGI-HVVS-GSLDTSIRVWD-----------VETGNCIHTLTGHQSLTS 323
Query: 429 EMELNDSAVIPG 440
MEL D+ ++ G
Sbjct: 324 GMELKDNILVSG 335
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 170 NGLWMVTSDHQGYIKYWQSNMNN-VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWD 228
+G+ +V+ I+ W N + T GH+ G+ D+ + + D TV++WD
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWD 345
Query: 229 FYRCTEEKVLRG---HGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAH 285
+ L+G H + V C+ ++ K+ +++ S D VKLWD K G+ + L
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG--TVKLWDLKTGEFIRNL--- 398
Query: 286 KSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTF 325
++ + W + AS L+ RN + E +
Sbjct: 399 --VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 436
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 121/281 (43%), Gaps = 41/281 (14%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQ--------GHKESIRGISF 208
AH A+R + W + + + W + +TF+ GH+ ++G+++
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 209 SPSDSKFATCSDDGTVRVWDFYRCTEE----KVLRGHGADVKCVDWHPYKSLIVSGSKDN 264
S ATCS D +V +W+ EE VL+ H DVK V WHP ++L+ S S D+
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 265 QQPVKLWDPKAG--QALATLHAHKSTVM--DLAWNQNGNWLVTASRDHLLKVF------- 313
V++W + +A L+ H+ TV D + L + S D ++V+
Sbjct: 176 --TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233
Query: 314 -DIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMF-------WHVGADKEV 365
D + E HK++ VAW GL +S GADG + W V A + +
Sbjct: 234 DDQQEWVCEAILPDVHKRQVYNVAW--GFNGLIASVGADGVLAVYEEVDGEWKVFAKRAL 291
Query: 366 GCIPQAHDNIIWTMAWHPLG--HILATGSNDHASKFWTRNR 404
C N++ W L ILATG +D FW+ +
Sbjct: 292 -CHGVYEINVV---KWLELNGKTILATGGDDGIVNFWSLEK 328
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 46/236 (19%)
Query: 183 IKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG 242
+KY + +V HK++IR +++ P S A S D TV +W EE R
Sbjct: 41 VKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW----AKEESADRTFE 96
Query: 243 ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLV 302
D+ LA + H++ V +AW+ +G +L
Sbjct: 97 MDL---------------------------------LAIIEGHENEVKGVAWSNDGYYLA 123
Query: 303 TASRDHLLKVFDIRNLSSE---VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWH- 358
T SRD + +++ E + + H ++ V WHP E L +S D ++ W
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKD 182
Query: 359 VGADKEVGCIPQAHDNIIWTMAWHPLGHI--LATGSNDHASKFWTRNRLGDPMRDR 412
D E + H+ +W+ + + L +GS+D + W +GD D+
Sbjct: 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW--KYMGDDEDDQ 236
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 301 LVTASRDHLLKVFDIRN---LSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFW 357
L T S D +K+ ++ +V HKK +VAW P H L ++G D ++ W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIW 85
Query: 358 --HVGADK----EVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLGDP 408
AD+ ++ I + H+N + +AW G+ LAT S D + W + G+
Sbjct: 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 15/191 (7%)
Query: 196 FQGHKESIRGISFSPSDS-KFATCSDDGTVRVWDFYRCTEE-------KVLRGHGADVKC 247
+GH++ G+S++ + S + SDD TV +WD +E + GH A V+
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 248 VDWHP-YKSLIVSGSKDNQQPVKLWDPKAGQALATLH---AHKSTVMDLAWNQNGNW-LV 302
V WH ++SL GS + Q + +WD ++ H AH + V L++N + L
Sbjct: 235 VAWHLLHESLF--GSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD 362
T S D + ++D+RNL ++ TF HK E V W P +E + +S G D + W +
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 363 KEVGCIPQAHD 373
E A D
Sbjct: 353 GEEQSAEDAED 363
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 196 FQGHKESIRGISFSP-SDSKFATCSDDGTVRVWDFYRCTEEK---VLRGHGADVKCVDWH 251
F GH + +++ +S F + +DD + +WD T K ++ H A+V C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 252 PYKSLIV-SGSKDNQQPVKLWDPKAGQ-ALATLHAHKSTVMDLAWN-QNGNWLVTASRDH 308
PY I+ +GS D + V LWD + + L T +HK + + W+ N L ++ D
Sbjct: 285 PYSEFILATGSAD--KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 309 LLKVFDIRNLSSE-------------VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIM 355
L V+D+ + E + GH + S +W+P + S D +
Sbjct: 343 RLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 402
Query: 356 FWHVG 360
W +
Sbjct: 403 IWQMA 407
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 25/182 (13%)
Query: 157 AHDCAVRHMVWS--HNGLWMVTSDHQGYIKYWQSNMNNVK----TFQGHKESIRGISFSP 210
H V + W H L+ +D Q + W + N H + +SF+P
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLM-IWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 285
Query: 211 -SDSKFATCSDDGTVRVWDFYRC-TEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPV 268
S+ AT S D TV +WD + H ++ V W P+ I++ S +++ +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR-L 344
Query: 269 KLWD-PKAGQA------------LATLHA-HKSTVMDLAWNQNGNWLV-TASRDHLLKVF 313
+WD K G+ L +H H + + D +WN N W++ + S D++++++
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Query: 314 DI 315
+
Sbjct: 405 QM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 15/191 (7%)
Query: 196 FQGHKESIRGISFSPSDS-KFATCSDDGTVRVWDFYRCTEE-------KVLRGHGADVKC 247
+GH++ G+S++ + S + SDD TV +WD +E + GH A V+
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 248 VDWHP-YKSLIVSGSKDNQQPVKLWDPKAGQALATLH---AHKSTVMDLAWNQNGNW-LV 302
V WH ++SL GS + Q + +WD ++ H AH + V L++N + L
Sbjct: 235 VAWHLLHESLF--GSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD 362
T S D + ++D+RNL ++ TF HK E V W P +E + +S G D + W +
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 363 KEVGCIPQAHD 373
E A D
Sbjct: 353 GEEQSAEDAED 363
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 196 FQGHKESIRGISFSP-SDSKFATCSDDGTVRVWDFYRCTEEK---VLRGHGADVKCVDWH 251
F GH + +++ +S F + +DD + +WD T K ++ H A+V C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 252 PYKSLIV-SGSKDNQQPVKLWDPKAGQ-ALATLHAHKSTVMDLAWN-QNGNWLVTASRDH 308
PY I+ +GS D + V LWD + + L T +HK + + W+ N L ++ D
Sbjct: 285 PYSEFILATGSAD--KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 309 LLKVFDIRNLSSE-------------VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIM 355
L V+D+ + E + GH + S +W+P + S D
Sbjct: 343 RLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQ 402
Query: 356 FW 357
W
Sbjct: 403 IW 404
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 157 AHDCAVRHMVWS--HNGLWMVTSDHQGYIKYWQSNMNNVK----TFQGHKESIRGISFSP 210
H V + W H L+ +D Q + W + N H + +SF+P
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQK-LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 285
Query: 211 -SDSKFATCSDDGTVRVWDFYRC-TEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPV 268
S+ AT S D TV +WD + H ++ V W P+ I++ S +++ +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR-L 344
Query: 269 KLWD-PKAGQA------------LATLHA-HKSTVMDLAWNQNGNWLV-TASRDHLLKVF 313
+WD K G+ L +H H + + D +WN N W++ + S D++ +++
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 4/209 (1%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPY 253
KTF + ++GI F P++ T G V +W++ E + ++ V+ +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 254 KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVF 313
K+ I+ GS D + +++++ G+ + AH + +A + ++++ S D +K++
Sbjct: 67 KNWIIVGSDDFR--IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 314 DIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHD 373
+ N + QTF GH+ VA++P+ F+SG D ++ W +G + +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 374 NIIWTMAWHPLGH--ILATGSNDHASKFW 400
+ + ++PL + T S+D K W
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 7/182 (3%)
Query: 186 WQSNMNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEEKVLR-GHGA 243
W++N +TF+GH+ + ++F+P D S FA+ D TV+VW + T L G
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 244 DVKCVDWHPY--KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWL 301
V VD++P K +++ S D +K+WD + +ATL H S V ++ +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDD--LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 302 VTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGA 361
++ S D LK+++ E +T + + +A HP + + G D +G
Sbjct: 244 ISGSEDGTLKIWNSSTYKVE-KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302
Query: 362 DK 363
D+
Sbjct: 303 DE 304
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 17/229 (7%)
Query: 173 WMVTSDHQGYIKYWQSNMNN-VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFY- 230
W++ I+ + N V F+ H + IR I+ P+ + SDD TV++W++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 231 RCTEEKVLRGHGADVKCVDWHPYK-SLIVSGSKDNQQPVKLWDPKAGQA-----LATLHA 284
E+ GH V CV ++P S SG D + VK+W GQ+ L T
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD--RTVKVW--SLGQSTPNFTLTTGQE 184
Query: 285 HKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGL 344
+D + +++TAS D +K++D + S V T GH S +HP +
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLP-I 242
Query: 345 FSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLG--HILATG 391
SG DG++ W+ K + + W +A HP G + +A+G
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLER-SWCIATHPTGRKNYIASG 290
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 11/234 (4%)
Query: 173 WMVTSDHQGYIKYWQSNMN-NVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYR 231
W++T+ + G ++ W V++ Q + +R F + SDD +RV+++
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY-- 84
Query: 232 CTEEKVL--RGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQAL-ATLHAHKST 288
T EKV+ H ++ + HP K ++SGS D VKLW+ + AL T H+
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD--LTVKLWNWENNWALEQTFEGHEHF 142
Query: 289 VMDLAWN-QNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSS 347
VM +A+N ++ + + D +KV+ + + G ++ + V ++P + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 348 GGADG-SIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+D +I W V + N+ + + +HP I+ +GS D K W
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHPTLPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 4/209 (1%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPY 253
KTF + ++GI F P++ T G V +W++ E + ++ V+ +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 254 KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVF 313
K+ I+ GS D + +++++ G+ + AH + +A + ++++ S D +K++
Sbjct: 67 KNWIIVGSDDFR--IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 314 DIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHD 373
+ N + QTF GH+ VA++P+ F+SG D ++ W +G + +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 374 NIIWTMAWHPLGH--ILATGSNDHASKFW 400
+ + ++PL + T S+D K W
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 7/182 (3%)
Query: 186 WQSNMNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEEKVLR-GHGA 243
W++N +TF+GH+ + ++F+P D S FA+ D TV+VW + T L G
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 244 DVKCVDWHPY--KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWL 301
V VD++P K +++ S D +K+WD + +ATL H S V ++ +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDD--LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 302 VTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGA 361
++ S D LK+++ E +T + + +A HP + + G D +G
Sbjct: 244 ISGSEDGTLKIWNSSTYKVE-KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302
Query: 362 DK 363
D+
Sbjct: 303 DE 304
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 17/229 (7%)
Query: 173 WMVTSDHQGYIKYWQSNMNN-VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFY- 230
W++ I+ + N V F+ H + IR I+ P+ + SDD TV++W++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 231 RCTEEKVLRGHGADVKCVDWHPYK-SLIVSGSKDNQQPVKLWDPKAGQA-----LATLHA 284
E+ GH V CV ++P S SG D + VK+W GQ+ L T
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD--RTVKVW--SLGQSTPNFTLTTGQE 184
Query: 285 HKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGL 344
+D + +++TAS D +K++D + S V T GH S +HP +
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLP-I 242
Query: 345 FSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLG--HILATG 391
SG DG++ W+ K + + W +A HP G + +A+G
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLER-SWCIATHPTGRKNYIASG 290
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 11/234 (4%)
Query: 173 WMVTSDHQGYIKYWQSNMN-NVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYR 231
W++T+ + G ++ W V++ Q + +R F + SDD +RV+++
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY-- 84
Query: 232 CTEEKVL--RGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQAL-ATLHAHKST 288
T EKV+ H ++ + HP K ++SGS D VKLW+ + AL T H+
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD--LTVKLWNWENNWALEQTFEGHEHF 142
Query: 289 VMDLAWN-QNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSS 347
VM +A+N ++ + + D +KV+ + + G ++ + V ++P + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 348 GGADG-SIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+D +I W V + N+ + + +HP I+ +GS D K W
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHPTLPIIISGSEDGTLKIW 255
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 111/285 (38%), Gaps = 60/285 (21%)
Query: 167 WSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKES--IRGISFSPSDSKFATCSDDGTV 224
WS+ + V + Y+ W ++ +V ES + + +S S + +G V
Sbjct: 101 WSNLNVVAVALERNVYV--WNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLV 158
Query: 225 RVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKD---NQQPVKLWDPKAGQALAT 281
++D T+ + + GH A V C+ W+ + ++ SGS+ + V++ A + T
Sbjct: 159 DIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRI----ANHQIGT 212
Query: 282 LHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQH 341
L H S V LAW +G L + D++++++D R+ S T H AVAW P
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 342 EGLFSSGGA--DGSIMFWHVGADKEVGCIPQ----------------------------- 370
L ++GG D I FW+ V +
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 371 ---------------AHDNIIWTMAWHPLGHILATGSNDHASKFW 400
AHD + A P G IL+T ++D KFW
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 7/169 (4%)
Query: 153 GRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVK-TFQGHKESIRGISFSPS 211
G H V + W +GL + + + ++ W + + K T H +++ +++ P
Sbjct: 211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPW 270
Query: 212 DSKFATCSD---DGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVS--GSKDNQQ 266
S D + W+ + G+ V + W P+ I+S G DN
Sbjct: 271 QSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 267 PVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDI 315
+ + + AH + V+ A + +G L TA+ D LK + +
Sbjct: 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 13/206 (6%)
Query: 193 VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHP 252
V++F+GH ++ + + + + S D T+R+WD + GH +DV VD
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 253 YKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDL------AWNQNGNWLVTASR 306
S I+SGS+D + +K+W K GQ LATL H V + + + +++A
Sbjct: 118 KASXIISGSRD--KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 307 DHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVG 366
D +K +++ E F GH + + P L +S G DG I W++ A K
Sbjct: 175 DKXVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASAGKDGEIXLWNLAAKKAXY 232
Query: 367 CIPQAHDNIIWTMAWHPLGHILATGS 392
+ A D + ++A+ P + LA +
Sbjct: 233 TL-SAQDEVF-SLAFSPNRYWLAAAT 256
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 87/217 (40%), Gaps = 16/217 (7%)
Query: 195 TFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEE-----KVLRGHGADVKCV 248
T +GH + ++ S + + S D T+ W ++ + +GH V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 249 DWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDH 308
+ +S S D + ++LWD G+ HKS V + ++ + +++ SRD
Sbjct: 72 TLTADGAYALSASWD--KTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDK 129
Query: 309 LLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-----LFSSGGADGSIMFWHVGADK 363
+KV+ I+ + T GH S V P + S G D + W++
Sbjct: 130 TIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN-QF 186
Query: 364 EVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
++ H++ I T+ P G ++A+ D W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 174 MVTSDHQGYIKYWQSNMNNVKT-FQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRC 232
++++ + +K W N ++ F GH +I ++ SP + A+ DG + +W+
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Query: 233 TEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPK----------AGQALATL 282
L +V + + P + + + + + L DP+ AG +
Sbjct: 229 KAXYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSL-DPQYLVDDLRPEFAGYS---- 282
Query: 283 HAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDI 315
A + + LAW+ +G L D++++V+ +
Sbjct: 283 KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 4/209 (1%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPY 253
KTF + ++GI F P++ T G V +W++ E + ++ V+ +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 254 KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVF 313
K+ I+ GS D + +++++ G+ + AH + +A + ++++ S D +K++
Sbjct: 67 KNWIIVGSDDFR--IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 314 DIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHD 373
+ N + QTF GH+ VA++P+ F+SG D ++ W +G + +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 374 NIIWTMAWHPLGH--ILATGSNDHASKFW 400
+ + ++PL + T S+D K W
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 20/216 (9%)
Query: 186 WQSNMNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEEKVLR-GHGA 243
W++N +TF+GH+ + ++F+P D S FA+ D TV+VW + T L G
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 244 DVKCVDWHPY--KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWL 301
V VD++P K +++ S D +K+WD + +ATL H S V ++ +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDD--LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 302 VTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGA 361
++ S D LK+++ E +T + + +A HP + + G D +G
Sbjct: 244 ISGSEDGTLKIWNSSTYKVE-KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302
Query: 362 DKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHAS 397
D+ T++ P+G ++ +G + A+
Sbjct: 303 DEP-------------TLSLDPVGKLVWSGGKNAAA 325
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 17/229 (7%)
Query: 173 WMVTSDHQGYIKYWQSNMNN-VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFY- 230
W++ I+ + N V F+ H + IR I+ P+ + SDD TV++W++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 231 RCTEEKVLRGHGADVKCVDWHPYK-SLIVSGSKDNQQPVKLWDPKAGQA-----LATLHA 284
E+ GH V CV ++P S SG D + VK+W GQ+ L T
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD--RTVKVW--SLGQSTPNFTLTTGQE 184
Query: 285 HKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGL 344
+D + +++TAS D +K++D + S V T GH S +HP +
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLP-I 242
Query: 345 FSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLG--HILATG 391
SG DG++ W+ K + + W +A HP G + +A+G
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLER-SWCIATHPTGRKNYIASG 290
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 11/234 (4%)
Query: 173 WMVTSDHQGYIKYWQSNMN-NVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYR 231
W++T+ + G ++ W V++ Q + +R F + SDD +RV+++
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY-- 84
Query: 232 CTEEKVL--RGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALA-TLHAHKST 288
T EKV+ H ++ + HP K ++SGS D VKLW+ + AL T H+
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD--LTVKLWNWENNWALEQTFEGHEHF 142
Query: 289 VMDLAWN-QNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSS 347
VM +A+N ++ + + D +KV+ + + G ++ + V ++P + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 348 GGADG-SIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+D +I W V + N+ + + +HP I+ +GS D K W
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHPTLPIIISGSEDGTLKIW 255
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 4/209 (1%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPY 253
KTF + ++GI F P++ T G V +W++ E + ++ V+ +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 254 KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVF 313
K+ I+ GS D + +++++ G+ + AH + +A + ++++ S D +K++
Sbjct: 67 KNWIIVGSDDFR--IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 314 DIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHD 373
+ N + QTF GH+ VA++P+ F+SG D ++ W +G + +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 374 NIIWTMAWHPLGH--ILATGSNDHASKFW 400
+ + ++PL + T S+D K W
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 186 WQSNMNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEEKVLR-GHGA 243
W++N +TF+GH+ + ++F+P D S FA+ D TV+VW + T L G
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 244 DVKCVDWHPY--KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWL 301
V VD++P K +++ S D +K+WD + +ATL H S V ++ +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDD--LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 302 VTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGA 361
++ S D LK+++ E +T + + +A HP + + G D +G
Sbjct: 244 ISGSEDGTLKIWNSSTYKVE-KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302
Query: 362 DKEVGCIPQAHDNIIWTMAWHPLGHIL-ATGSNDHASKFWT 401
D+ T++ P+G ++ + G N AS +T
Sbjct: 303 DEP-------------TLSLDPVGKLVWSGGKNAAASDIFT 330
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 17/229 (7%)
Query: 173 WMVTSDHQGYIKYWQSNMNN-VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYR 231
W++ I+ + N V F+ H + IR I+ P+ + SDD TV++W++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 232 C-TEEKVLRGHGADVKCVDWHPYK-SLIVSGSKDNQQPVKLWDPKAGQA-----LATLHA 284
E+ GH V CV ++P S SG D + VK+W GQ+ L T
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD--RTVKVW--SLGQSTPNFTLTTGQE 184
Query: 285 HKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGL 344
+D + +++TAS D +K++D + S V T GH S +HP +
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLP-I 242
Query: 345 FSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLG--HILATG 391
SG DG++ W+ K + + W +A HP G + +A+G
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLER-SWCIATHPTGRKNYIASG 290
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 11/234 (4%)
Query: 173 WMVTSDHQGYIKYWQSNMN-NVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYR 231
W++T+ + G ++ W V++ Q + +R F + SDD +RV+++
Sbjct: 27 WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY-- 84
Query: 232 CTEEKVL--RGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALA-TLHAHKST 288
T EKV+ H ++ + HP K ++SGS D VKLW+ + AL T H+
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD--LTVKLWNWENNWALEQTFEGHEHF 142
Query: 289 VMDLAWN-QNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSS 347
VM +A+N ++ + + D +KV+ + + G ++ + V ++P + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 348 GGADG-SIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+D +I W V + N+ + + +HP I+ +GS D K W
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHPTLPIIISGSEDGTLKIW 255
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 29/231 (12%)
Query: 154 RRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTF----QGHKESIRGISFS 209
R + H V + +S + +V++ IK W + T +GH++ + + FS
Sbjct: 467 RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526
Query: 210 PSDSK--FATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQP 267
P+ + + S D TV+VW+ C L GH V V P SL SG KD
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-- 584
Query: 268 VKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRG 327
V LWD G+ L +L A+ S + L ++ N WL A+ +H +K++D+ + S
Sbjct: 585 VLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVD 642
Query: 328 HKKEA------------------SAVAWHPQHEGLFSSGGADGSIMFWHVG 360
K EA +++ W LF SG DG I W +G
Sbjct: 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF-SGYTDGVIRVWGIG 692
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 23/236 (9%)
Query: 172 LWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFA-TCSDDGTVRVWDFY 230
LW +T D + Y + GH + + S SD +FA + S DG +R+WD
Sbjct: 409 LWKLTKDDKAY-------GVAQRRLTGHSHFVEDVVLS-SDGQFALSGSWDGELRLWDLA 460
Query: 231 RCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATL----HAHK 286
+ GH DV V + IVS S+D + +KLW+ G+ T+ H+
Sbjct: 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD--RTIKLWNT-LGECKYTISEGGEGHR 517
Query: 287 STVMDLAWNQNGNW--LVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGL 344
V + ++ N +V+AS D +KV+++ N T GH S VA P L
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDGS-L 575
Query: 345 FSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+SGG DG ++ W + K++ + +++I + + P + L + +H K W
Sbjct: 576 CASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAAT-EHGIKIW 628
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 14/216 (6%)
Query: 195 TFQGHKESIRGISFSPSDSK--FATCSDDGTVRVWDFYR-----CTEEKVLRGHGADVKC 247
T + H + + I+ +P D+ + S D ++ +W + ++ L GH V+
Sbjct: 377 TMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 248 VDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRD 307
V +SGS D + ++LWD AG + H V+ +A++ + +V+ASRD
Sbjct: 436 VVLSSDGQFALSGSWDGE--LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 308 HLLKVFDIRNLSSEV--QTFRGHKKEASAVAWHPQH-EGLFSSGGADGSIMFWHVGADKE 364
+K+++ + GH+ S V + P + S D ++ W++ ++ +
Sbjct: 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL-SNCK 552
Query: 365 VGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+ H + T+A P G + A+G D W
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 134/319 (42%), Gaps = 48/319 (15%)
Query: 104 LQPDVMYYPHMLPPPSFEDNATNAVTTRFVKAATNKMRCPIFSMTWTPEGRRLAHDCAVR 163
L DV Y + N T+ V R ++ + K ++S+ WTPE
Sbjct: 33 LDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGK----VYSLDWTPEKN--------- 79
Query: 164 HMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKT--FQGHKESIRGISFSPSDSKFATCSDD 221
W+V++ G + W + + + KT + H + +F+P+ A D
Sbjct: 80 ---------WIVSASQDGRLIVWNA-LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD 129
Query: 222 GTVRVWDFYRCTE-------EKVLRGHGADVKCVDWHP-YKSLIVSGSKDNQQPVKLWDP 273
+++ + +VL GH + P ++ +++GS D Q LWD
Sbjct: 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD--QTCVLWDV 187
Query: 274 KAGQALATL-----HAHKSTVMDLAWNQ-NGNWLVTASRDHLLKVFDIRNLSSEVQTFRG 327
GQ ++ H + V+ L+ N N N ++ S D ++++D+R S V+T+ G
Sbjct: 188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG 247
Query: 328 HKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCI---PQAHDN---IIWTMAW 381
H+ + ++V + P + F +G DG+ + + ++ P +DN I+ ++A+
Sbjct: 248 HEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306
Query: 382 HPLGHILATGSNDHASKFW 400
G +L G ++ W
Sbjct: 307 SISGRLLFAGYSNGDCYVW 325
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 236 KVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWN 295
+ L+GH V +DW P K+ IVS S+D + V W+ Q + H VM+ A+
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIV--WNALTSQKTHAIKLHCPWVMECAFA 117
Query: 296 QNGNWLVTASRDHLLKVFDIRNLSSEV---------QTFRGHKKEASAVAWHPQHEGLFS 346
NG + D +F NLSS+ + GHK AS+ + P E
Sbjct: 118 PNGQSVACGGLDSACSIF---NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 347 SGGADGSIMFWHVGADKEVGC----IPQAHDNIIWTMAWHPL-GHILATGSNDHASKFWT 401
+G D + + W V + + P H + +++ + L ++ +GS D + W
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Query: 402 RNRLGDPMRDRYNQKG 417
+R + +G
Sbjct: 235 LRITSRAVRTYHGHEG 250
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 183 IKYWQSNMNN--VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRG 240
++ W + + V+T+ GH+ I + F P +F T SDDGT R++D R + +
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM-RTGHQLQVYN 288
Query: 241 HGAD--------VKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATL----HAHKST 288
D V V + L+ +G + V WD + + L ++H+
Sbjct: 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV--WDTLLAEMVLNLGTLQNSHEGR 346
Query: 289 VMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKK 330
+ L + +G+ L T S D LK++ F GH+K
Sbjct: 347 ISCLGLSSDGSALCTGSWDKNLKIW----------AFSGHRK 378
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 111/240 (46%), Gaps = 16/240 (6%)
Query: 186 WQSNMNNVKTFQGHKESIRGI-SFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGAD 244
W+ ++++ E+ +G+ D K + D T+++WD +++L GH
Sbjct: 116 WRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS 175
Query: 245 VKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTA 304
V C+ + + +I++GS D+ V++WD G+ L TL H V+ L +N NG +VT
Sbjct: 176 VLCLQYD--ERVIITGSSDS--TVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NG-MMVTC 229
Query: 305 SRDHLLKVFDIRNLS--SEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD 362
S+D + V+D+ + + + + GH+ + V + ++ S D +I W+
Sbjct: 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY---IVSASGDRTIKVWNTSTC 286
Query: 363 KEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLGDPMRDRYNQKGLAHCI 422
+ V + H I + + ++ +GS+D+ + W G +R + L CI
Sbjct: 287 EFVRTL-NGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIE-CGACLRVLEGHEELVRCI 342
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 156 LAHDC-AVRHMVWSHNGLWMVTSDHQGYIKYWQ----SNMNNVKTFQGHKESIRGISFSP 210
L H C AV H+ + +NG+ MVT I W +++ + GH+ ++ + F
Sbjct: 209 LIHHCEAVLHLRF-NNGM-MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 265
Query: 211 SDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKL 270
D + S D T++VW+ C + L GH + C+ + L+VSGS DN ++L
Sbjct: 266 -DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDN--TIRL 320
Query: 271 WDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDI 315
WD + G L L H+ V + ++ +V+ + D +KV+D+
Sbjct: 321 WDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDL 363
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 86/219 (39%), Gaps = 6/219 (2%)
Query: 183 IKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG 242
+K + N+ + GH + F D++ T S D T +WD + GH
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 243 ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLV 302
DV + P L VSG+ D KLWD + G T H+S + + + NGN
Sbjct: 185 GDVMSLSLAPDTRLFVSGACD--ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-LFSSGGADGSIMFWHVGA 361
T S D ++FD+R E+ T+ + G L +G D + W
Sbjct: 243 TGSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 362 DKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
G + HDN + + G +ATGS D K W
Sbjct: 302 ADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 60/262 (22%)
Query: 190 MNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKV------------ 237
M +T +GH I + + + S DG + +WD Y T KV
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMT 102
Query: 238 ------------------------------------LRGHGADVKCVDWHPYKSLIVSGS 261
L GH + C + + IV+ S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSS 161
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE 321
D LWD + GQ T H VM L+ + V+ + D K++D+R
Sbjct: 162 GDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIW---T 378
QTF GH+ + +A+ + P F++G D + + + AD+E+ + +HDNII +
Sbjct: 220 -QTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQEL--MTYSHDNIICGITS 275
Query: 379 MAWHPLGHILATGSNDHASKFW 400
+++ G +L G +D W
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVW 297
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG---ADVKCVDW 250
+TF GH+ I I F P+ + FAT SDD T R++D R +E + H + V +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSF 278
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLL 310
L+++G D V WD L H + V L +G + T S D L
Sbjct: 279 SKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 311 KVFD 314
K+++
Sbjct: 337 KIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 86/219 (39%), Gaps = 6/219 (2%)
Query: 183 IKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG 242
+K + N+ + GH + F D++ T S D T +WD + GH
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 243 ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLV 302
DV + P L VSG+ D KLWD + G T H+S + + + NGN
Sbjct: 185 GDVMSLSLAPDTRLFVSGACD--ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-LFSSGGADGSIMFWHVGA 361
T S D ++FD+R E+ T+ + G L +G D + W
Sbjct: 243 TGSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 362 DKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
G + HDN + + G +ATGS D K W
Sbjct: 302 ADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 60/262 (22%)
Query: 190 MNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKV------------ 237
M +T +GH I + + + S DG + +WD Y T KV
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMT 102
Query: 238 ------------------------------------LRGHGADVKCVDWHPYKSLIVSGS 261
L GH + C + + IV+ S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSS 161
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE 321
D LWD + GQ T H VM L+ + V+ + D K++D+R
Sbjct: 162 GDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIW---T 378
QTF GH+ + +A+ + P F++G D + + + AD+E+ + +HDNII +
Sbjct: 220 -QTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQEL--MTYSHDNIICGITS 275
Query: 379 MAWHPLGHILATGSNDHASKFW 400
+++ G +L G +D W
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVW 297
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG---ADVKCVDW 250
+TF GH+ I I F P+ + FAT SDD T R++D R +E + H + V +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSF 278
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLL 310
L+++G D V WD L H + V L +G + T S D L
Sbjct: 279 SKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 311 KVFD 314
K+++
Sbjct: 337 KIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 86/219 (39%), Gaps = 6/219 (2%)
Query: 183 IKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG 242
+K + N+ + GH + F D++ T S D T +WD + GH
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 243 ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLV 302
DV + P L VSG+ D KLWD + G T H+S + + + NGN
Sbjct: 185 GDVMSLSLAPDTRLFVSGACD--ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-LFSSGGADGSIMFWHVGA 361
T S D ++FD+R E+ T+ + G L +G D + W
Sbjct: 243 TGSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 362 DKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
G + HDN + + G +ATGS D K W
Sbjct: 302 ADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 60/262 (22%)
Query: 190 MNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKV------------ 237
M +T +GH I + + + S DG + +WD Y T KV
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMT 102
Query: 238 ------------------------------------LRGHGADVKCVDWHPYKSLIVSGS 261
L GH + C + + IV+ S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSS 161
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE 321
D LWD + GQ T H VM L+ + V+ + D K++D+R
Sbjct: 162 GDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIW---T 378
QTF GH+ + +A+ + P F++G D + + + AD+E+ + +HDNII +
Sbjct: 220 -QTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQEL--MTYSHDNIICGITS 275
Query: 379 MAWHPLGHILATGSNDHASKFW 400
+++ G +L G +D W
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVW 297
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG---ADVKCVDW 250
+TF GH+ I I F P+ + FAT SDD T R++D R +E + H + V +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSF 278
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLL 310
L+++G D V WD L H + V L +G + T S D L
Sbjct: 279 SKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 311 KVFD 314
K+++
Sbjct: 337 KIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 86/219 (39%), Gaps = 6/219 (2%)
Query: 183 IKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG 242
+K + N+ + GH + F D++ T S D T +WD + GH
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 243 ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLV 302
DV + P L VSG+ D KLWD + G T H+S + + + NGN
Sbjct: 185 GDVMSLSLAPDTRLFVSGACD--ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-LFSSGGADGSIMFWHVGA 361
T S D ++FD+R E+ T+ + G L +G D + W
Sbjct: 243 TGSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 362 DKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
G + HDN + + G +ATGS D K W
Sbjct: 302 ADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 60/262 (22%)
Query: 190 MNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKV------------ 237
M +T +GH I + + + S DG + +WD Y T KV
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMT 102
Query: 238 ------------------------------------LRGHGADVKCVDWHPYKSLIVSGS 261
L GH + C + + IV+ S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSS 161
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE 321
D LWD + GQ T H VM L+ + V+ + D K++D+R
Sbjct: 162 GDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIW---T 378
QTF GH+ + +A+ + P F++G D + + + AD+E+ + +HDNII +
Sbjct: 220 -QTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQEL--MTYSHDNIICGITS 275
Query: 379 MAWHPLGHILATGSNDHASKFW 400
+++ G +L G +D W
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVW 297
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG---ADVKCVDW 250
+TF GH+ I I F P+ + FAT SDD T R++D R +E + H + V +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSF 278
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLL 310
L+++G D V WD L H + V L +G + T S D L
Sbjct: 279 SKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 311 KVFD 314
K+++
Sbjct: 337 KIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 86/219 (39%), Gaps = 6/219 (2%)
Query: 183 IKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG 242
+K + N+ + GH + F D++ T S D T +WD + GH
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 195
Query: 243 ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLV 302
DV + P L VSG+ D KLWD + G T H+S + + + NGN
Sbjct: 196 GDVMSLSLAPDTRLFVSGACD--ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-LFSSGGADGSIMFWHVGA 361
T S D ++FD+R E+ T+ + G L +G D + W
Sbjct: 254 TGSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 312
Query: 362 DKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
G + HDN + + G +ATGS D K W
Sbjct: 313 ADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 60/262 (22%)
Query: 190 MNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKV------------ 237
M +T +GH I + + + S DG + +WD Y T KV
Sbjct: 56 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMT 113
Query: 238 ------------------------------------LRGHGADVKCVDWHPYKSLIVSGS 261
L GH + C + + IV+ S
Sbjct: 114 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSS 172
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE 321
D LWD + GQ T H VM L+ + V+ + D K++D+R
Sbjct: 173 GDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIW---T 378
QTF GH+ + +A+ + P F++G D + + + AD+E+ + +HDNII +
Sbjct: 231 -QTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQEL--MTYSHDNIICGITS 286
Query: 379 MAWHPLGHILATGSNDHASKFW 400
+++ G +L G +D W
Sbjct: 287 VSFSKSGRLLLAGYDDFNCNVW 308
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHG---ADVKCVDW 250
+TF GH+ I I F P+ + FAT SDD T R++D R +E + H + V +
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSF 289
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLL 310
L+++G D V WD L H + V L +G + T S D L
Sbjct: 290 SKSGRLLLAGYDDFNCNV--WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 347
Query: 311 KVFD 314
K+++
Sbjct: 348 KIWN 351
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 284 AHKSTVMDLAWN-QNGNWLVTASRDHLLKVFDIRN------LSSEVQTFRGHKKEASAVA 336
H + V+D+AW N N + + S D + V++I + L V T GH K VA
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 337 WHPQHEGLFSSGGADGSIMFWHVGADKEVGCI-PQAHDNIIWTMAWHPLGHILATGSND 394
WHP + + S G D I+ W VG V + P H + I+++ W G ++ T D
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 191 NNVKTFQGHKESIRGISFSP-SDSKFATCSDDGTVRVWD-----FYRCTEEKV--LRGHG 242
NV GH + I++ P +D+ A+ S+D TV VW+ E V L GH
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 243 ADVKCVDWHPY-KSLIVSGSKDNQQPVKLWDPKAGQALATL--HAHKSTVMDLAWNQNGN 299
V V WHP +++++S DN + +WD G A+ TL H T+ + W+++G
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNV--ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 300 WLVTASRDHLLKVFDIRNLSSEVQTFRGHK 329
+ T+ RD ++V + R + + R H+
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 327 GHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD------KEVGCIPQAHDNIIWTMA 380
GH +AW P ++ + +SG D ++M W + +E + H + +A
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 381 WHPLGH-ILATGSNDHASKFW 400
WHP +L + D+ W
Sbjct: 139 WHPTAQNVLLSAGCDNVILVW 159
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 282 LHAHKSTVMDLAWN-QNGNWLVTASRDHLLKVFDIRN------LSSEVQTFRGHKKEASA 334
+ H + V+D+AW N N + + S D + V++I + L V T GH K
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 335 VAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCI-PQAHDNIIWTMAWHPLGHILATGSN 393
VAWHP + + S G D I+ W VG V + P H + I+++ W G ++ T
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 394 D 394
D
Sbjct: 197 D 197
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 191 NNVKTFQGHKESIRGISFSP-SDSKFATCSDDGTVRVWD-----FYRCTEEKV--LRGHG 242
NV GH + I++ P +D+ A+ S+D TV VW+ E V L GH
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 243 ADVKCVDWHPY-KSLIVSGSKDNQQPVKLWDPKAGQALATL--HAHKSTVMDLAWNQNGN 299
V V WHP +++++S DN + +WD G A+ TL H T+ + W+++G
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNV--ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 300 WLVTASRDHLLKVFDIRNLSSEVQTFRGHK 329
+ T+ RD ++V + R + + R H+
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD------KEVGCIPQAHDNI 375
V GH +AW P ++ + +SG D ++M W + +E + H
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 376 IWTMAWHPLGH-ILATGSNDHASKFW 400
+ +AWHP +L + D+ W
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVW 159
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 20/209 (9%)
Query: 164 HMVWSHNGLWMVTSDHQGYIKYWQSNMNNVK-TFQGHKESIRGISFSPSDSKFATCSDDG 222
H N L + T + ++K W N + T GH S+ FSP D A+CS DG
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 772
Query: 223 TVRVWDFYRCTEEKVLRGH-------------GADVKCVDWHPYKSLIVSGSKDNQQPVK 269
T+R+WD E K + VKC W I+ +K+ V
Sbjct: 773 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK---VL 829
Query: 270 LWDPKAGQALATLH-AHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGH 328
L+D LA +H H ST+ ++ + V A + +++++I + +V RGH
Sbjct: 830 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGH 888
Query: 329 KKEASAVAWHPQHEGLFSSGGADGSIMFW 357
V + P F + D +I W
Sbjct: 889 LSWVHGVMFSPDGSS-FLTASDDQTIRVW 916
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Query: 158 HDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNM-NNVKTFQGHKESIRGISFSPSDSKFA 216
H AV H +S +G + + ++ +++ + + H++ + +FS DS A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 217 TCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAG 276
TCS D V++WD H V C + + ++ + N +KLWD
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 277 QALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRN 317
+ T+ H ++V ++ + L + S D L+++D+R+
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 156 LAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISFSPSDSKF 215
+ H AVRH+ ++ +G +++S I+ W + Q H+E+++ DS+
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRL-LQDSRL 1065
Query: 216 ATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKA 275
+ S DGTV+VW+ E+ H V + S S D + K+W
Sbjct: 1066 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD--KTAKIWSFDL 1123
Query: 276 GQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRN---------LSSEVQTFR 326
L L H V A++ +G L T + ++++++ + +S E T
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT-A 1182
Query: 327 GHKKEASAVAWHPQHEGLFSSGG 349
H + V + P + L S+GG
Sbjct: 1183 THGGWVTDVCFSPDSKTLVSAGG 1205
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 71/376 (18%), Positives = 141/376 (37%), Gaps = 57/376 (15%)
Query: 92 RVWQ-RDYRDRRALQPDVMYYPHMLPPPSFEDNAT----NAVTTRFVKAATNKMRCPIFS 146
R+W R +R+++ + PP E +A + + AA NK+
Sbjct: 775 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 834
Query: 147 MTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMN-NVKTFQGHKESIRG 205
+ H +++ +S V + Q ++ W + V +GH + G
Sbjct: 835 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG 894
Query: 206 ISFSPSDSKFATCSDDGTVRVWD------------------FYRCTEEKVL-----RGHG 242
+ FSP S F T SDD T+RVW+ ++ E VL RG
Sbjct: 895 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 954
Query: 243 --------------ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKST 288
A V C P+ + G +D +K+ + + ++ HK
Sbjct: 955 LIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG--AIKIIELPNNRVFSSGVGHKKA 1012
Query: 289 VMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSG 348
V + + +G L+++S D +++V++ + + + + H++ + + + S
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQ--TGDYVFLQAHQE--TVKDFRLLQDSRLLSW 1068
Query: 349 GADGSIMFWHV---GADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRL 405
DG++ W+V +++ C H + + A ++ S D +K W+ + L
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTC----HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 406 GDPMRDRYNQKGLAHC 421
P+ + G C
Sbjct: 1125 S-PLHELKGHNGCVRC 1139
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
Query: 285 HKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGL 344
H V ++Q+G + + D L+VF ++ + H+ E A+ +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSD-DSY 678
Query: 345 FSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHIL-ATGSNDHASKFWTRN 403
++ AD + W K V + + + + H+L ATGSND K W N
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 404 R 404
+
Sbjct: 739 Q 739
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 20/209 (9%)
Query: 164 HMVWSHNGLWMVTSDHQGYIKYWQSNMNNVK-TFQGHKESIRGISFSPSDSKFATCSDDG 222
H N L + T + ++K W N + T GH S+ FSP D A+CS DG
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765
Query: 223 TVRVWDFYRCTEEKVLRGH-------------GADVKCVDWHPYKSLIVSGSKDNQQPVK 269
T+R+WD E K + VKC W I+ +K+ V
Sbjct: 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK---VL 822
Query: 270 LWDPKAGQALATLH-AHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGH 328
L+D LA +H H ST+ ++ + V A + +++++I + +V RGH
Sbjct: 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGH 881
Query: 329 KKEASAVAWHPQHEGLFSSGGADGSIMFW 357
V + P F + D +I W
Sbjct: 882 LSWVHGVMFSPDGSS-FLTASDDQTIRVW 909
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Query: 158 HDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNM-NNVKTFQGHKESIRGISFSPSDSKFA 216
H AV H +S +G + + ++ +++ + + H++ + +FS DS A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 217 TCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAG 276
TCS D V++WD H V C + + ++ + N +KLWD
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 277 QALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRN 317
+ T+ H ++V ++ + L + S D L+++D+R+
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 156 LAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISFSPSDSKF 215
+ H AVRH+ ++ +G +++S I+ W + Q H+E+++ DS+
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRL-LQDSRL 1058
Query: 216 ATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKA 275
+ S DGTV+VW+ E+ H V + S S D + K+W
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD--KTAKIWSFDL 1116
Query: 276 GQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRN---------LSSEVQTFR 326
L L H V A++ +G L T + ++++++ + +S E T
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT-A 1175
Query: 327 GHKKEASAVAWHPQHEGLFSSGG 349
H + V + P + L S+GG
Sbjct: 1176 THGGWVTDVCFSPDSKTLVSAGG 1198
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 71/376 (18%), Positives = 141/376 (37%), Gaps = 57/376 (15%)
Query: 92 RVWQ-RDYRDRRALQPDVMYYPHMLPPPSFEDNAT----NAVTTRFVKAATNKMRCPIFS 146
R+W R +R+++ + PP E +A + + AA NK+
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827
Query: 147 MTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMN-NVKTFQGHKESIRG 205
+ H +++ +S V + Q ++ W + V +GH + G
Sbjct: 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG 887
Query: 206 ISFSPSDSKFATCSDDGTVRVWD------------------FYRCTEEKVL-----RGHG 242
+ FSP S F T SDD T+RVW+ ++ E VL RG
Sbjct: 888 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 947
Query: 243 --------------ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKST 288
A V C P+ + G +D +K+ + + ++ HK
Sbjct: 948 LIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG--AIKIIELPNNRVFSSGVGHKKA 1005
Query: 289 VMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSG 348
V + + +G L+++S D +++V++ + + + + H++ + + + S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQ--TGDYVFLQAHQE--TVKDFRLLQDSRLLSW 1061
Query: 349 GADGSIMFWHV---GADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRL 405
DG++ W+V +++ C H + + A ++ S D +K W+ + L
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTC----HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 406 GDPMRDRYNQKGLAHC 421
P+ + G C
Sbjct: 1118 S-PLHELKGHNGCVRC 1132
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
Query: 285 HKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGL 344
H V ++Q+G + + D L+VF ++ + H+ E A+ +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSD-DSY 671
Query: 345 FSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHIL-ATGSNDHASKFWTRN 403
++ AD + W K V + + + + H+L ATGSND K W N
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 404 R 404
+
Sbjct: 732 Q 732
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)
Query: 151 PEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKT---FQGHKESIRGIS 207
P+ R H V + S+NG + V++ ++ W N+ N + F GH + + ++
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLW--NLQNGQCQYKFLGHTKDVLSVA 116
Query: 208 FSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGAD-VKCVDWHPY--KSLIVSGSKDN 264
FSP + + + D +RVW+ + RG D V CV + P +IVSG DN
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDN 176
Query: 265 QQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDI 315
VK+WD G+ + L H + V + + +G+ ++ +D + +++D+
Sbjct: 177 L--VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 4/167 (2%)
Query: 235 EKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAW 294
++ L GH A V V + VS S D+ ++LW+ + GQ H V+ +A+
Sbjct: 60 DRRLEGHSAFVSDVALSNNGNFAVSASWDHS--LRLWNLQNGQCQYKFLGHTKDVLSVAF 117
Query: 295 NQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEG-LFSSGGADGS 353
+ + +V+ RD+ L+V++++ + H S V + P + + SGG D
Sbjct: 118 SPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 354 IMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+ W + + V + + H N + ++ P G + A+ D ++ W
Sbjct: 178 VKVWDLATGRLVTDL-KGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPY 253
+ +GH + ++ S + + + S D ++R+W+ + GH DV V + P
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 254 KSLIVSGSKDNQQPVKLWDPKAGQALATL----HAHKSTVMDLAWNQNGNWLVTASRDHL 309
IVSG +DN +++W+ K G+ + TL H + + + + + +V+ D+L
Sbjct: 121 NRQIVSGGRDN--ALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 310 LKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHV 359
+KV+D+ V +GH ++V P L +S DG W +
Sbjct: 178 VKVWDLAT-GRLVTDLKGHTNYVTSVTVSPDGS-LCASSDKDGVARLWDL 225
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 20/209 (9%)
Query: 164 HMVWSHNGLWMVTSDHQGYIKYWQSNMNNVK-TFQGHKESIRGISFSPSDSKFATCSDDG 222
H S + L + T ++K W N + T GH S+ FSP D A+CS DG
Sbjct: 712 HFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADG 771
Query: 223 TVRVWDFYRCTEEKVL-------------RGHGADVKCVDWHPYKSLIVSGSKDNQQPVK 269
T+++WD E K + VKC W + I+ +K+ +
Sbjct: 772 TLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN---KIF 828
Query: 270 LWDPKAGQALATLH-AHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGH 328
L+D L +H H ST+ ++ + V A + +++++ + S+V RGH
Sbjct: 829 LFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDS-RSKVADCRGH 887
Query: 329 KKEASAVAWHPQHEGLFSSGGADGSIMFW 357
V + P +S D +I W
Sbjct: 888 LSWVHGVMFSPDGSSFLTSSD-DQTIRLW 915
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 106/268 (39%), Gaps = 22/268 (8%)
Query: 158 HDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNM-NNVKTFQGHKESIRGISFSPSDSKFA 216
H AV H +S +G + + ++ +++ + + H++ + +FS D A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 217 TCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDW--HPYKSLIVSGSKDNQQPVKLWDPK 274
TCS D V++W+ H V C + + L+ +GS D +KLWD
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC--FLKLWDLN 737
Query: 275 AGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNL----SSEVQTFRGHKK 330
+ T+ H ++V ++ + L + S D LK++D + S V+ F + +
Sbjct: 738 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE 797
Query: 331 E--------ASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWH 382
+ +W +G A I + + +G I H + I +
Sbjct: 798 DPQEDMEVIVKCCSWSA--DGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS 855
Query: 383 PLGHILATGSNDHASKFW---TRNRLGD 407
P H+ + + + W +R+++ D
Sbjct: 856 PQNHLAVVALSQYCVELWNTDSRSKVAD 883
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 181 GYIKYWQS-NMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLR 239
G +K W N K F H+ ++ S +KF++ S D T ++W F LR
Sbjct: 1071 GTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR 1130
Query: 240 GHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATL--------HAHKSTVMD 291
GH V+C + +L+ +G D+ +++W+ G+ L H V D
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATG--DDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 292 LAWNQNGNWLVTA 304
L ++ +G L++A
Sbjct: 1189 LCFSPDGKMLISA 1201
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 17/214 (7%)
Query: 155 RLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISFSPSDSK 214
R H V H+ ++ + +++S I+ W ++ +GH+E+++ +S+
Sbjct: 1005 RFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRL-LKNSR 1063
Query: 215 FATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPK 274
+ S DGTV+VW+ +EK H V D + S S D + K+W
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSAD--KTAKIWSFD 1121
Query: 275 AGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRN---------LSSEVQTF 325
L L H V A++ + L T + ++++++ N LS E
Sbjct: 1122 LLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA- 1180
Query: 326 RGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHV 359
H + + + P + L S+GG I +W+V
Sbjct: 1181 -THGGWVTDLCFSPDGKMLISAGGY---IKWWNV 1210
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/306 (18%), Positives = 111/306 (36%), Gaps = 52/306 (16%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSN-MNNVKTFQGHKESIRGISFSPSDSKF 215
H +++ +S V + Q ++ W ++ + V +GH + G+ FSP S F
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 216 ATCSDDGTVRVWDFYR-CTEEKVLRGHGAD------------------------------ 244
T SDD T+R+W+ + C V+ D
Sbjct: 904 LTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQID 963
Query: 245 ------VKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNG 298
V C P+ I G D +++ + + + HK TV + + +
Sbjct: 964 YLTEAQVSCCCLSPHLQYIAFG--DENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADE 1021
Query: 299 NWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWH 358
L+++S D ++V++ + + RGH++ L S DG++ W+
Sbjct: 1022 KTLISSSDDAEIQVWNWQ--LDKCIFLRGHQETVKDFRLLKNSRLL--SWSFDGTVKVWN 1077
Query: 359 V---GADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLGDPMRDRYNQ 415
+ +K+ C H + + ++ S D +K W+ + L P+ +
Sbjct: 1078 IITGNKEKDFVC----HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLL-PLHELRGH 1132
Query: 416 KGLAHC 421
G C
Sbjct: 1133 NGCVRC 1138
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 110/241 (45%), Gaps = 29/241 (12%)
Query: 156 LAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSN-----MNNVKTFQGHKESIRGISF-S 209
L D + WSHN + + G ++ + +N +N++ F H S++ + F +
Sbjct: 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA 123
Query: 210 PSDSKFATCSDDGTVRVWDFYRCTEEK---VLRGHGADVKCVD------WHPYKSLI-VS 259
D+ A+ ++G + +WD +CTE G + VD W+ +SL V
Sbjct: 124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWN--QSLAHVF 181
Query: 260 GSKDNQQPVKLWDPKAGQALATLH------AHKSTVMDLAWN-QNGNWLVTAS---RDHL 309
S + +WD KA + + L K + + W+ +N + TA+ D
Sbjct: 182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241
Query: 310 LKVFDIRNLSSEVQTF-RGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCI 368
+ ++D+RN ++ +QT +GH+K ++ W Q E L S G D +++ W+ + +++
Sbjct: 242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF 301
Query: 369 P 369
P
Sbjct: 302 P 302
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 194 KTFQGHKESIRGISFSPSDSKFA-TCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHP 252
+ +GH + + S SD +FA + S DGT+R+WD T + GH DV V +
Sbjct: 57 RALRGHSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 253 YKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLA---W--------NQNGNWL 301
IVSGS+D + +KLW+ TL K TV D + W N + +
Sbjct: 116 DNRQIVSGSRD--KTIKLWN--------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 165
Query: 302 VTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGA 361
V+ D L+KV+++ N + GH + V P L +SGG DG M W +
Sbjct: 166 VSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNE 223
Query: 362 DKEV 365
K +
Sbjct: 224 GKHL 227
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 74/221 (33%), Gaps = 55/221 (24%)
Query: 148 TWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQ--GHKESIRG 205
T T R + H V + +S + +V+ IK W + T Q H E +
Sbjct: 94 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 153
Query: 206 ISFSPSDSK--FATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKD 263
+ FSP+ S +C D V+VW+ C + GH + V P SL SG KD
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 213
Query: 264 NQQPVKLWDPKAGQALATL----------------------------------------- 282
Q LWD G+ L TL
Sbjct: 214 GQ--AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 271
Query: 283 --------HAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDI 315
A LAW+ +G L D+L++V+ +
Sbjct: 272 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 324 TFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQ----AHDNIIWTM 379
T +GH + +A PQ + S D +I+ W + D+ IPQ H + + +
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 380 AWHPLGHILATGSNDHASKFW 400
G +GS D + W
Sbjct: 70 VISSDGQFALSGSWDGTLRLW 90
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 194 KTFQGHKESIRGISFSPSDSKFA-TCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHP 252
+ +GH + + S SD +FA + S DGT+R+WD T + GH DV V +
Sbjct: 80 RALRGHSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 253 YKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLA---W--------NQNGNWL 301
IVSGS+D + +KLW+ TL K TV D + W N + +
Sbjct: 139 DNRQIVSGSRD--KTIKLWN--------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188
Query: 302 VTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGA 361
V+ D L+KV+++ N + GH + V P L +SGG DG M W +
Sbjct: 189 VSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNE 246
Query: 362 DKEV 365
K +
Sbjct: 247 GKHL 250
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 74/221 (33%), Gaps = 55/221 (24%)
Query: 148 TWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQ--GHKESIRG 205
T T R + H V + +S + +V+ IK W + T Q H E +
Sbjct: 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176
Query: 206 ISFSPSDSK--FATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKD 263
+ FSP+ S +C D V+VW+ C + GH + V P SL SG KD
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 236
Query: 264 NQQPVKLWDPKAGQALATL----------------------------------------- 282
Q LWD G+ L TL
Sbjct: 237 GQ--AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 294
Query: 283 --------HAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDI 315
A LAW+ +G L D+L++V+ +
Sbjct: 295 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 324 TFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQ----AHDNIIWTM 379
T +GH + +A PQ + S D +I+ W + D+ IPQ H + + +
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 380 AWHPLGHILATGSNDHASKFW 400
G +GS D + W
Sbjct: 93 VISSDGQFALSGSWDGTLRLW 113
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 21/228 (9%)
Query: 167 WSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHK--ESIRGISFSPSDSKFATCSDDGT 223
WS + V D+ Y+ W ++ ++ + Q + E I +++ + A +
Sbjct: 124 WSSGNVLAVALDNSVYL--WSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 181
Query: 224 VRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKD---NQQPVKLWDPKAGQALA 280
V++WD + + + H A V + W+ Y ++ SGS+ + V++ A +A
Sbjct: 182 VQLWDVQQQKRLRNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRV----AEHHVA 235
Query: 281 TLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSS---EVQTFRGHKKEASAVAW 337
TL H V L W +G L + D+L+ V+ +QTF H+ AVAW
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 338 HPQHEGLFSSGG--ADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHP 383
P + ++GG +D I W+V + + + AH + ++ W P
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVC-SILWSP 341
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/261 (18%), Positives = 107/261 (40%), Gaps = 15/261 (5%)
Query: 107 DVMYYPHMLPPPSFEDNATNAVTTRFVKAATNKMRCPIFSMTWTPEGRRL-AHDCAVRHM 165
D++ M P + + ++ T+ ++ + R + +H V +
Sbjct: 147 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL 206
Query: 166 VWSHNGLWMVTSDHQGYIKYWQSNM--NNVKTFQGHKESIRGISFSPSDSKFATCSDDGT 223
W N + + G+I + + ++V T GH + + G+ ++P A+ +D
Sbjct: 207 SW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 264
Query: 224 VRVWDFY----RCTEEKVLRGHGADVKCVDWHPYKS-LIVSGSKDNQQPVKLWDPKAGQA 278
V VW + H VK V W P++S ++ +G + + +++W+ +G
Sbjct: 265 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 324
Query: 279 LATLHAHKSTVMDLAWNQNGNWLVTAS--RDHLLKVFDIRNLSSEVQTFRGHKKEASAVA 336
L+ + AH S V + W+ + L++ + L ++ + ++V +GH ++
Sbjct: 325 LSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLT 382
Query: 337 WHPQHEGLFSSGGADGSIMFW 357
P +S AD ++ W
Sbjct: 383 MSPD-GATVASAAADETLRLW 402
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 86/207 (41%), Gaps = 26/207 (12%)
Query: 144 IFSMTWTPEGRRLA---HDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHK 200
+ + W P+GR LA +D V +W G++ ++TF H+
Sbjct: 244 VCGLRWAPDGRHLASGGNDNLVN--------VWPSAPGEGGWVP--------LQTFTQHQ 287
Query: 201 ESIRGISFSPSDSKFATC---SDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLI 257
+++ +++ P S + D +R+W+ + H + V + W P+ +
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKEL 346
Query: 258 VSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRN 317
+SG Q + +W +A L H S V+ L + +G + +A+ D L+++
Sbjct: 347 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 406
Query: 318 LSSEVQTFRGHKKEASAVAWHPQHEGL 344
L R +++ASA H+G+
Sbjct: 407 LDP---ARRREREKASAAKSSLIHQGI 430
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 10/158 (6%)
Query: 245 VKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHK--STVMDLAWNQNGNWLV 302
+ VDW L V+ DN V LW +G L L + + +AW + GN+L
Sbjct: 119 LNLVDWSSGNVLAVA--LDNS--VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 174
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD 362
+ ++++D++ ++ H +++W+ + SSG G I V
Sbjct: 175 VGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVA 230
Query: 363 KEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+ H + + W P G LA+G ND+ W
Sbjct: 231 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 21/228 (9%)
Query: 167 WSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHK--ESIRGISFSPSDSKFATCSDDGT 223
WS + V D+ Y+ W ++ ++ + Q + E I +++ + A +
Sbjct: 113 WSSGNVLAVALDNSVYL--WSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170
Query: 224 VRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKD---NQQPVKLWDPKAGQALA 280
V++WD + + + H A V + W+ Y ++ SGS+ + V++ A +A
Sbjct: 171 VQLWDVQQQKRLRNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRV----AEHHVA 224
Query: 281 TLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSS---EVQTFRGHKKEASAVAW 337
TL H V L W +G L + D+L+ V+ +QTF H+ AVAW
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 338 HPQHEGLFSSGG--ADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHP 383
P + ++GG +D I W+V + + + AH + ++ W P
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVC-SILWSP 330
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/261 (18%), Positives = 107/261 (40%), Gaps = 15/261 (5%)
Query: 107 DVMYYPHMLPPPSFEDNATNAVTTRFVKAATNKMRCPIFSMTWTPEGRRL-AHDCAVRHM 165
D++ M P + + ++ T+ ++ + R + +H V +
Sbjct: 136 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL 195
Query: 166 VWSHNGLWMVTSDHQGYIKYWQSNM--NNVKTFQGHKESIRGISFSPSDSKFATCSDDGT 223
W N + + G+I + + ++V T GH + + G+ ++P A+ +D
Sbjct: 196 SW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253
Query: 224 VRVWDFY----RCTEEKVLRGHGADVKCVDWHPYKS-LIVSGSKDNQQPVKLWDPKAGQA 278
V VW + H VK V W P++S ++ +G + + +++W+ +G
Sbjct: 254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 313
Query: 279 LATLHAHKSTVMDLAWNQNGNWLVTAS--RDHLLKVFDIRNLSSEVQTFRGHKKEASAVA 336
L+ + AH S V + W+ + L++ + L ++ + ++V +GH ++
Sbjct: 314 LSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLT 371
Query: 337 WHPQHEGLFSSGGADGSIMFW 357
P +S AD ++ W
Sbjct: 372 MSPD-GATVASAAADETLRLW 391
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 86/207 (41%), Gaps = 26/207 (12%)
Query: 144 IFSMTWTPEGRRLA---HDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHK 200
+ + W P+GR LA +D V +W G++ ++TF H+
Sbjct: 233 VCGLRWAPDGRHLASGGNDNLVN--------VWPSAPGEGGWVP--------LQTFTQHQ 276
Query: 201 ESIRGISFSPSDSKFATC---SDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLI 257
+++ +++ P S + D +R+W+ + H + V + W P+ +
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKEL 335
Query: 258 VSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRN 317
+SG Q + +W +A L H S V+ L + +G + +A+ D L+++
Sbjct: 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395
Query: 318 LSSEVQTFRGHKKEASAVAWHPQHEGL 344
L R +++ASA H+G+
Sbjct: 396 LDP---ARRREREKASAAKSSLIHQGI 419
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 10/158 (6%)
Query: 245 VKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHK--STVMDLAWNQNGNWLV 302
+ VDW L V+ DN V LW +G L L + + +AW + GN+L
Sbjct: 108 LNLVDWSSGNVLAVA--LDNS--VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 163
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD 362
+ ++++D++ ++ H +++W+ + SSG G I V
Sbjct: 164 VGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVA 219
Query: 363 KEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+ H + + W P G LA+G ND+ W
Sbjct: 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 8/202 (3%)
Query: 139 KMRCPIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQ-SNMNNVKTFQ 197
K R + W+ EG H V + SH +S +I+ W N +K+
Sbjct: 64 KWRDERLDLQWSLEG----HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID 119
Query: 198 GHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLI 257
++FSP AT + G V ++ +E L G + + + P +
Sbjct: 120 AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179
Query: 258 VSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRN 317
SG+ D + ++D G+ L TL H + L ++ + LVTAS D +K++D+++
Sbjct: 180 ASGAIDG--IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237
Query: 318 LSSEVQTFRGHKKEASAVAWHP 339
++ T GH VA+ P
Sbjct: 238 -ANLAGTLSGHASWVLNVAFCP 258
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 144 IFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESI 203
I S+ ++P+G+ LA +G+ + G + + T +GH I
Sbjct: 167 ILSIAYSPDGKYLASGAI--------DGIINIFDIATGKL---------LHTLEGHAMPI 209
Query: 204 RGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKD 263
R ++FSP T SDDG ++++D L GH + V V + P + VS S
Sbjct: 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS- 268
Query: 264 NQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD 314
+ VK+WD + T H+ V + +N NG+ +V+ D + ++D
Sbjct: 269 -DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 15/238 (6%)
Query: 162 VRHMVWSHNGLWMVTSDHQGYIKYWQSNMNN---VKTFQG--HKESIRGISFSPSDSKFA 216
V + W +V SD G ++ W+ + N V F H + + +S S ++
Sbjct: 85 VADLTWVGERGILVASD-SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV 143
Query: 217 TCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYK-SLIVSGSKDNQQPVKLWDPKA 275
+ S D ++VWD + R H A V CV P+K S+ +S S+DN+ + LWD +
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR--ILLWDTRC 201
Query: 276 GQALATLHAHKSTVM--DLAWN-QNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEA 332
+ + + + LAW+ Q V + + + D ++ +S V + H +
Sbjct: 202 PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQCV 260
Query: 333 SAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILAT 390
+ + + P +S D S+ + QAH + + W PL H L T
Sbjct: 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR--SQAHRDFVRDATWSPLNHSLLT 316
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 21/228 (9%)
Query: 167 WSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHK--ESIRGISFSPSDSKFATCSDDGT 223
WS + V D+ Y+ W ++ ++ + Q + E I +++ + A +
Sbjct: 33 WSSGNVLAVALDNSVYL--WSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 90
Query: 224 VRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKD---NQQPVKLWDPKAGQALA 280
V++WD + + + H A V + W+ Y ++ SGS+ + V++ A +A
Sbjct: 91 VQLWDVQQQKRLRNMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRV----AEHHVA 144
Query: 281 TLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE---VQTFRGHKKEASAVAW 337
TL H V L W +G L + D+L+ V+ +QTF H+ AVAW
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 338 HPQHEGLFSSGG--ADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHP 383
P + ++GG +D I W+V + + + AH + ++ W P
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVC-SILWSP 250
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/310 (18%), Positives = 123/310 (39%), Gaps = 26/310 (8%)
Query: 62 DPDFDGKKLRKSSMRKTVDYNAAVINAL----EARVWQRDYRDRRALQPDVMYYPHMLPP 117
D D ++R VD+++ + A+ +W A D++ M P
Sbjct: 14 DRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWS-------ASSGDILQLLQMEQP 66
Query: 118 PSFEDNATNAVTTRFVKAATNKMRCPIFSMTWTPEGRRL-AHDCAVRHMVWSHNGLWMVT 176
+ + ++ T+ ++ + R + +H V + W N + +
Sbjct: 67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSS 124
Query: 177 SDHQGYIKYWQSNM--NNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFY---- 230
G+I + + ++V T GH + + G+ ++P A+ +D V VW
Sbjct: 125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184
Query: 231 RCTEEKVLRGHGADVKCVDWHPYKS-LIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTV 289
+ H VK V W P++S ++ +G + + +++W+ +G L+ + AH S V
Sbjct: 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQV 243
Query: 290 MDLAWNQNGNWLVTAS--RDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSS 347
+ W+ + L++ + L ++ + ++V +GH ++ P +S
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPD-GATVAS 301
Query: 348 GGADGSIMFW 357
AD ++ W
Sbjct: 302 AAADETLRLW 311
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 75/178 (42%), Gaps = 17/178 (9%)
Query: 144 IFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESI 203
+ + W P+GR LA ++V +W G++ ++TF H+ ++
Sbjct: 153 VCGLRWAPDGRHLASG-GNDNLV----NVWPSAPGEGGWVP--------LQTFTQHQGAV 199
Query: 204 RGISFSPSDSKFATC---SDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSG 260
+ +++ P S + D +R+W+ + H + V + W P+ ++SG
Sbjct: 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 258
Query: 261 SKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNL 318
Q + +W +A L H S V+ L + +G + +A+ D L+++ L
Sbjct: 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 10/158 (6%)
Query: 245 VKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHK--STVMDLAWNQNGNWLV 302
+ VDW L V+ DN V LW +G L L + + +AW + GN+L
Sbjct: 28 LNLVDWSSGNVLAVA--LDNS--VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 83
Query: 303 TASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGAD 362
+ ++++D++ ++ H +++W+ + SSG G I V
Sbjct: 84 VGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVA 139
Query: 363 KEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+ H + + W P G LA+G ND+ W
Sbjct: 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 24/228 (10%)
Query: 181 GYIKYWQSNMNNVKTFQ---GHKESIRGISFSPSDS-KFATCSDDGTVRVWDFYRCTEEK 236
G I W + + TF G SI G+ F+P ++ +F S +GT R+ DF +
Sbjct: 142 GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF----KGN 197
Query: 237 VLRGHGADVKCVDWHPYKSLIVSGSK------DNQQPVKLWDPKAGQALATLHAHKSTVM 290
+LR + W + SL VS S DN V L + G+ L L HK V
Sbjct: 198 ILRVFASSDTINIW--FCSLDVSASSRMVVTGDNVGNVILLN-MDGKELWNLRMHKKKVT 254
Query: 291 DLAWNQNGNW-LVTASRDHLLKVFDIRNLSSEVQTFRG--HKKEASAVAWHPQHEGLFSS 347
+A N +W L TAS D +K++D+R + + H+ +A + P L ++
Sbjct: 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
Query: 348 GGADGSIMFWHVGADKEVGCIPQAHDNII----WTMAWHPLGHILATG 391
++ D +G IP H + AWHP +++ G
Sbjct: 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 273 PKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEA 332
P + TLH HK Q G + S H L + I +Q + A
Sbjct: 72 PPCRSIVRTLHQHKLGRASWPSVQQG---LQQSFLHTLDSYRI------LQKAAPFDRRA 122
Query: 333 SAVAWHPQHEGLFSSGGADGSIMFWHVG 360
+++AWHP H + G G IM W+ G
Sbjct: 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFG 150
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 174 MVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISFSPS-DSKFATCSDDGTVRVWDF 229
+VT D+ G + + + + HK+ + ++ +P D AT S D TV++WD
Sbjct: 224 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 24/228 (10%)
Query: 181 GYIKYWQSNMNNVKTFQ---GHKESIRGISFSPSDS-KFATCSDDGTVRVWDFYRCTEEK 236
G I W + + TF G SI G+ F+P ++ +F S +GT R+ DF +
Sbjct: 142 GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF----KGN 197
Query: 237 VLRGHGADVKCVDWHPYKSLIVSGSK------DNQQPVKLWDPKAGQALATLHAHKSTVM 290
+LR + W + SL VS S DN V L + G+ L L HK V
Sbjct: 198 ILRVFASSDTINIW--FCSLDVSASSRMVVTGDNVGNVILLN-MDGKELWNLRMHKKKVT 254
Query: 291 DLAWNQNGNW-LVTASRDHLLKVFDIRNLSSEVQTFRG--HKKEASAVAWHPQHEGLFSS 347
+A N +W L TAS D +K++D+R + + H+ +A + P L ++
Sbjct: 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
Query: 348 GGADGSIMFWHVGADKEVGCIPQAHDNII----WTMAWHPLGHILATG 391
++ D +G IP H + AWHP +++ G
Sbjct: 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 273 PKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEA 332
P + TLH HK Q G + S H L + I +Q + A
Sbjct: 72 PPCRSIVRTLHQHKLGRASWPSVQQG---LQQSFLHTLDSYRI------LQKAAPFDRRA 122
Query: 333 SAVAWHPQHEGLFSSGGADGSIMFWHVG 360
+++AWHP H + G G IM W+ G
Sbjct: 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFG 150
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 174 MVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISFSPS-DSKFATCSDDGTVRVWDF 229
+VT D+ G + + + + HK+ + ++ +P D AT S D TV++WD
Sbjct: 224 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 24/228 (10%)
Query: 181 GYIKYWQSNMNNVKTFQ---GHKESIRGISFSPSDS-KFATCSDDGTVRVWDFYRCTEEK 236
G I W + + TF G SI G+ F+P ++ +F S +GT R+ DF +
Sbjct: 143 GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF----KGN 198
Query: 237 VLRGHGADVKCVDWHPYKSLIVSGSK------DNQQPVKLWDPKAGQALATLHAHKSTVM 290
+LR + W + SL VS S DN V L + G+ L L HK V
Sbjct: 199 ILRVFASSDTINIW--FCSLDVSASSRMVVTGDNVGNVILLN-MDGKELWNLRMHKKKVT 255
Query: 291 DLAWNQNGNW-LVTASRDHLLKVFDIRNLSSEVQTFRG--HKKEASAVAWHPQHEGLFSS 347
+A N +W L TAS D +K++D+R + + H+ +A + P L ++
Sbjct: 256 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 315
Query: 348 GGADGSIMFWHVGADKEVGCIPQAHDNII----WTMAWHPLGHILATG 391
++ D +G IP H + AWHP +++ G
Sbjct: 316 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 363
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 273 PKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEA 332
P + TLH HK Q G + S H L + I +Q + A
Sbjct: 73 PPCRSIVRTLHQHKLGRASWPSVQQG---LQQSFLHTLDSYRI------LQKAAPFDRRA 123
Query: 333 SAVAWHPQHEGLFSSGGADGSIMFWHVG 360
+++AWHP H + G G IM W+ G
Sbjct: 124 TSLAWHPTHPSTVAVGSKGGDIMLWNFG 151
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 174 MVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISFSPS-DSKFATCSDDGTVRVWDF 229
+VT D+ G + + + + HK+ + ++ +P D AT S D TV++WD
Sbjct: 225 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 281
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 110/271 (40%), Gaps = 35/271 (12%)
Query: 151 PEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKESIRGISFS 209
P H+ V + S + ++S ++ W K F GH+ + ++FS
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 210 PSDSKFATCSDDGTVRVWDFY-RCTEEKVLRGHGAD-VKCVDWHPYKSLIVSGSKDNQQP 267
P + + + + +++W+ C + + +D V CV + P + S + QP
Sbjct: 128 PDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-----IMKSANKVQP 182
Query: 268 -------------VKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD 314
+K+W+ Q T AH+S V L+ + NG ++ T +D L ++D
Sbjct: 183 FAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Query: 315 IRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAH-- 372
I NL+ + F + +A++P+ + + + G G +F + K C +A
Sbjct: 242 ILNLTYPQREFDA-GSTINQIAFNPKLQWV-AVGTDQGVKIFNLMTQSKAPVCTIEAEPI 299
Query: 373 ---------DNIIWTMAWHPLGHILATGSND 394
+ ++AW+ LG L G D
Sbjct: 300 TKAEGQKGKNPQCTSLAWNALGKKLFAGFTD 330
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 99/241 (41%), Gaps = 31/241 (12%)
Query: 196 FQGHKESIRGI--SFSPSDSK----FATCSDDGTVRVWDFYRCTEE-------KVLRGHG 242
+GH + + I FS +++ + S D TV +W Y + K L GH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 243 ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLV 302
V + +S S D + ++LWD + G H+S V +A++ + ++
Sbjct: 77 HFVSDLALSQENCFAISSSWD--KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
Query: 303 TASRDHLLKVFDIRN---LSSEVQTFRGHKKEASAVAWHPQHEG---------LFSSGGA 350
+A + +K+++I SS + H S V + P + F+S G
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEK--ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 351 DGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLGDPMR 410
DG + W+ + ++ +AH++ + ++ P G +ATG D W L P R
Sbjct: 193 DGRLKVWNT--NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 411 D 411
+
Sbjct: 251 E 251
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 181 GYIKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRG 240
G +K W +N TF+ H+ ++ +S SP+ AT D + +WD T +
Sbjct: 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD 253
Query: 241 HGADVKCVDWHPYKSLIVSGSKDNQQPVKLWD--PKAGQALATLHAHKST---------- 288
G+ + + ++P + G+ Q VK+++ ++ + T+ A T
Sbjct: 254 AGSTINQIAFNPKLQWVAVGT---DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP 310
Query: 289 -VMDLAWNQNGNWLVTASRDHLLKVFDI 315
LAWN G L D +++ F
Sbjct: 311 QCTSLAWNALGKKLFAGFTDGVIRTFSF 338
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 12/212 (5%)
Query: 155 RLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNV-KTFQGHKESIRGISFSPS-D 212
+ HD V+ + +G V+ +K W + V K++ H + ++ P D
Sbjct: 135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194
Query: 213 SKFATCSDDGTVRVWDFYRCTEEKVLRGHGADV--KCVDWHPYK--SLIVSGSKDNQQPV 268
+ F +C +DG + +WD + + +D V WHP K + N V
Sbjct: 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254
Query: 269 KLWDPKAGQALATLHAHKSTVMDLAWNQNGN-WLVTASRDHLLKVFDIRNLSSEVQTFRG 327
+ +P + Q A H + LA++ + + +L + S D + V D SEV
Sbjct: 255 NIKNPDSAQTSAV---HSQNITGLAYSYHSSPFLASISEDCTVAVLDADF--SEVFRDLS 309
Query: 328 HKKEASAVAWHPQHEGLFSSGGADGSIMFWHV 359
H+ + VAW P F++ G D ++ H+
Sbjct: 310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 243 ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALAT----LHAHKSTVMDLAWNQNG 298
A V V W K ++V+ + V+LW+ ++L + H V L+ +G
Sbjct: 95 AGVTDVAWVSEKGILVAS---DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG 151
Query: 299 NWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWH 358
V+ +D +KV+D+ + ++++ H E + VA P + +F S G DG I+ W
Sbjct: 152 TQAVSGGKDFSVKVWDLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Query: 359 VGADKEVGCIP-QAHDNIIWTMAWHP 383
K I A D I ++ WHP
Sbjct: 211 TRKPKPATRIDFCASDTIPTSVTWHP 236
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 96/238 (40%), Gaps = 17/238 (7%)
Query: 159 DCAVRHMVWSHNGLWMVTSDHQGYIKYWQ-----SNMNNVKTFQGHKESIRGISFSPSDS 213
+ V + W +V SD G ++ W+ S + N H + ++ +S +
Sbjct: 94 EAGVTDVAWVSEKGILVASD-SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT 152
Query: 214 KFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYK-SLIVSGSKDNQQPVKLWD 272
+ + D +V+VWD + K H ++V CV P K ++ +S +D + + LWD
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR--ILLWD 210
Query: 273 ---PKAGQALATLHAHKSTVMDLAWN-QNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGH 328
PK + A + + W+ + + + + +I+N S QT H
Sbjct: 211 TRKPKPATRI-DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS-AQTSAVH 268
Query: 329 KKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGH 386
+ + +A+ +S D ++ + AD +H + + +AW PL H
Sbjct: 269 SQNITGLAYSYHSSPFLASISEDCTVAV--LDADFSEVFRDLSHRDFVTGVAWSPLDH 324
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 108/284 (38%), Gaps = 37/284 (13%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNN---VKTFQGHKESIRGISFS--PS 211
AH+ + V + G + T IK ++ + T GH+ + + ++
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 212 DSKFATCSDDGTVRVW--DFYRCTEEKVLRGHGADVKCVDW--HPYKSLIVSGSKDNQQP 267
+ A+CS DG V +W + R ++ V H A V V W H Y L++ S D +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 268 VKLWDPKAGQALATLHAHKSTVMDLAW---------NQNGNW----LVTASRDHLLKVFD 314
V + + + AH V +W NG VT D+L+K++
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW- 185
Query: 315 IRNLSSEVQTF------RGHKKEASAVAWHPQ--HEGLFSSGGADGSIMFW----HVGAD 362
+S+ QT+ GH VAW P +S D + + W G
Sbjct: 186 --KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW 243
Query: 363 KEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLG 406
K+ + +++W +W G++LA D+ W N G
Sbjct: 244 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 283 HAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE-VQTFRGHKKEASAVAW-HPQ 340
+AH + D + G L T S D +K+F++ + + + T GH+ V W HP+
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 341 HEGLFSSGGADGSIMFWHVGADKEVG-----CIPQAHDNIIWTMAW--HPLGHILATGSN 393
+ +S DG ++ W +E G + H + ++ W H G +L S+
Sbjct: 66 FGTILASCSYDGKVLIWK----EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 394 D 394
D
Sbjct: 122 D 122
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 108/284 (38%), Gaps = 37/284 (13%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNN---VKTFQGHKESIRGISFS--PS 211
AH+ + V + G + T IK ++ + T GH+ + + ++
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 212 DSKFATCSDDGTVRVW--DFYRCTEEKVLRGHGADVKCVDW--HPYKSLIVSGSKDNQQP 267
+ A+CS DG V +W + R ++ V H A V V W H Y L++ S D +
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 268 VKLWDPKAGQALATLHAHKSTVMDLAW---------NQNGNW----LVTASRDHLLKVFD 314
V + + + AH V +W NG VT D+L+K++
Sbjct: 129 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW- 187
Query: 315 IRNLSSEVQTF------RGHKKEASAVAWHPQ--HEGLFSSGGADGSIMFW----HVGAD 362
+S+ QT+ GH VAW P +S D + + W G
Sbjct: 188 --KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW 245
Query: 363 KEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLG 406
K+ + +++W +W G++LA D+ W N G
Sbjct: 246 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 276 GQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE-VQTFRGHKKEASA 334
G + +AH + D + G L T S D +K+F++ + + + T GH+
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR 60
Query: 335 VAW-HPQHEGLFSSGGADGSIMFW 357
V W HP+ + +S DG ++ W
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIW 84
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 38/259 (14%)
Query: 173 WMVTSDHQGYIKYWQS-NMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYR 231
+++T I+ + S N + GH + + ++ + S D TVRVWD +
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKK 192
Query: 232 CTEEKVLRGHGADVKCVDWHPYKSL--IVSGSKDN-----QQPVKLWDPKAGQA------ 278
V GH + V+C+D YK++ IV+GS+DN + P + P G+
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 279 ----------LATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGH 328
+ L H ++V ++ +GN +V+ S D+ L V+D+ + + GH
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGH 309
Query: 329 KKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNII--------WTMA 380
+ + + + S+ D +I W + + E+ Q H ++ + ++
Sbjct: 310 TDRIYSTIYDHERKRCISA-SMDTTIRIWDL-ENGELMYTLQGHTALVGLLRLSDKFLVS 367
Query: 381 WHPLGHILATGSNDHASKF 399
G I +ND++ KF
Sbjct: 368 AAADGSIRGWDANDYSRKF 386
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 34/245 (13%)
Query: 193 VKTFQGHKESIRGISFS--PSDSKFATCSDDGTVRVW--DFYRCTEEKVLRGHGADVKCV 248
+ T GH+ + + ++ + A+CS DG V +W + R ++ V H A V V
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 249 DW--HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAW---------NQN 297
W H Y L++ S D + V + + + AH V +W N
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 298 GNW----LVTASRDHLLKVFDIRNLSSEVQTF------RGHKKEASAVAWHPQ--HEGLF 345
G VT D+L+K++ +S+ QT+ GH VAW P
Sbjct: 166 GTKESRKFVTGGADNLVKIW---KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 222
Query: 346 SSGGADGSIMFW----HVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWT 401
+S D + + W G K+ + +++W +W G++LA D+ W
Sbjct: 223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282
Query: 402 RNRLG 406
N G
Sbjct: 283 ENLEG 287
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 283 HAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE-VQTFRGHKKEASAVAW-HPQ 340
+AH + D + G L T S D +K+F++ + + + T GH+ V W HP+
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 341 HEGLFSSGGADGSIMFW 357
+ +S DG ++ W
Sbjct: 66 FGTILASCSYDGKVLIW 82
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Query: 157 AHDCAV---RHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQG-HKESIRGISFSPSD 212
AH+ +V + + +S N ++D IK WQ N +KTF G H + +R ++ D
Sbjct: 140 AHNASVWDAKVVSFSENKFLTASADKT--IKLWQ-NDKVIKTFSGIHNDVVRHLAV-VDD 195
Query: 213 SKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWD 272
F +CS+DG +++ D + + GH + V C+ P ++ G + V++W
Sbjct: 196 GHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG---EDRTVRIWS 252
Query: 273 PKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVF 313
+ G + ++ + NG+ ++ S D+L+++F
Sbjct: 253 KENGSLKQVITLPAISIWSVDCXSNGD-IIVGSSDNLVRIF 292
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 16/214 (7%)
Query: 213 SKFATCSDDGTVRVW---DFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQ-QPV 268
SK A+ S DGTVR+W D + T V G G + V + K L++ G KD V
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGT--VVYTGQGF-LNSVCYDSEKELLLFGGKDTXINGV 86
Query: 269 KLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGH 328
L+ L TL H+ V L++ Q+G +++ S D KV+ +L +Q
Sbjct: 87 PLFATSGEDPLYTLIGHQGNVCSLSF-QDGV-VISGSWDKTAKVWKEGSLVYNLQAHNAS 144
Query: 329 KKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHIL 388
+A V++ E F + AD +I W DK + H++++ +A GH +
Sbjct: 145 VWDAKVVSF---SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI 199
Query: 389 ATGSNDHASKFWTRNRLGDPMRDRYNQKGLAHCI 422
+ SND K GD +R + +CI
Sbjct: 200 SC-SNDGLIKL-VDXHTGDVLRTYEGHESFVYCI 231
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 108/284 (38%), Gaps = 37/284 (13%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNN---VKTFQGHKESIRGISFS--PS 211
AH+ + V + G M T IK ++ + T GH+ + + ++
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 212 DSKFATCSDDGTVRVW--DFYRCTEEKVLRGHGADVKCVDW--HPYKSLIVSGSKDNQQP 267
+ A+CS DG V +W + R ++ V H A V V W H Y +++ S D +
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 268 VKLWDPKAGQALATLHAHKSTVMDLAW---------NQNGNW----LVTASRDHLLKVFD 314
V + + + AH V +W NG VT D+L+K++
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW- 185
Query: 315 IRNLSSEVQTF------RGHKKEASAVAWHPQ--HEGLFSSGGADGSIMFW----HVGAD 362
+S+ QT+ GH VAW P +S D + + W G
Sbjct: 186 --KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW 243
Query: 363 KEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLG 406
K+ + +++W +W G++LA D+ W N G
Sbjct: 244 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 283 HAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE-VQTFRGHKKEASAVAW-HPQ 340
+AH + D + G + T S D +K+F++ + + + T GH+ V W HP+
Sbjct: 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 341 HEGLFSSGGADGSIMFW 357
+ +S DG +M W
Sbjct: 66 FGTILASCSYDGKVMIW 82
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 25/195 (12%)
Query: 284 AHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSS-EVQTFRGHKKEASAVAW-HPQH 341
+H+ + D + G L T S D +K+FD+RN + RGH+ VAW HP +
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 342 EGLFSSGGADGSIMFWHVGADKEVGCIPQA-----HDNIIWTMAW--HPLGHILATGSND 394
+ +S D ++ W +E G ++ HD+ + ++ W H G ILA GS+D
Sbjct: 71 GNILASCSYDRKVIIWR----EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126
Query: 395 HASKFWTRNRLGDPMRDRYNQKGLAHCITGVYNEEMELNDSAVIPGMGLEDEDSVFPSSE 454
A T G + N C + AV+PG ++ PS +
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-------AVVPGSLID-----HPSGQ 174
Query: 455 PLNEVGKSTSGPNTN 469
N + + SG N
Sbjct: 175 KPNYIKRFASGGCDN 189
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 103/247 (41%), Gaps = 38/247 (15%)
Query: 188 SNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKV--LRGHGADV 245
S +N V T H++ I ++ ATCS D +V+++D + + LRGH V
Sbjct: 3 SVINTVDT--SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPV 60
Query: 246 KCVDW-HP-YKSLIVSGSKDNQQPVKLWDPKAGQ-ALATLHA-HKSTVMDLAW--NQNGN 299
V W HP Y +++ S S D + V +W + G + HA H S+V + W + G
Sbjct: 61 WQVAWAHPMYGNILASCSYDRK--VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL 118
Query: 300 WLVTASRDHLLKVFDIRNLSS-EVQTF-RGHKKEASAVAW----------------HPQH 341
L S D + + EV+ H +AV+W P +
Sbjct: 119 ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNY 178
Query: 342 EGLFSSGGADGSIMFWHVGAD---KEVGCIPQAHDNIIWTMAWHP-LG---HILATGSND 394
F+SGG D I W D KE + +AH + + +AW P +G +A+ S D
Sbjct: 179 IKRFASGGCDNLIKLWKEEEDGQWKEEQKL-EAHSDWVRDVAWAPSIGLPTSTIASCSQD 237
Query: 395 HASKFWT 401
WT
Sbjct: 238 GRVFIWT 244
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 81/223 (36%), Gaps = 32/223 (14%)
Query: 215 FATCSDDGTVRVWDFYRCTEEKVLR--GHGADVKCVDW--HPYKSLIVSGSKDNQQPVKL 270
A+CS D V +W T EK GH + V V W H Y ++ GS D +
Sbjct: 74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133
Query: 271 WDPKAGQALATLH-AHKSTVMDLAW--------------NQNGNWL---VTASRDHLLKV 312
+ + + ++ AH ++W Q N++ + D+L+K+
Sbjct: 134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL 193
Query: 313 FDIRNLSS--EVQTFRGHKKEASAVAWHPQHEGL----FSSGGADGSIMFWHVGADKEVG 366
+ E Q H VAW P GL +S DG + W
Sbjct: 194 WKEEEDGQWKEEQKLEAHSDWVRDVAWAPS-IGLPTSTIASCSQDGRVFIWTCDDASSNT 252
Query: 367 CIPQ---AHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRLG 406
P+ ++++W ++W +ILA D+ W + G
Sbjct: 253 WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 38/259 (14%)
Query: 173 WMVTSDHQGYIKYWQS-NMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYR 231
+++T I+ + S N + GH + + ++ + S D TVRVWD +
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKK 192
Query: 232 CTEEKVLRGHGADVKCVDWHPYKSL--IVSGSKDN-----QQPVKLWDPKAGQA------ 278
V GH + V+C+D YK++ IV+GS+DN + P + P G+
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 279 ----------LATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGH 328
+ L H ++V ++ +GN +V+ S D+ L V+D+ + GH
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKC-LYILSGH 309
Query: 329 KKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNII--------WTMA 380
+ + + + S+ D +I W + + E+ Q H ++ + ++
Sbjct: 310 TDRIYSTIYDHERKRCISA-SXDTTIRIWDL-ENGELXYTLQGHTALVGLLRLSDKFLVS 367
Query: 381 WHPLGHILATGSNDHASKF 399
G I +ND++ KF
Sbjct: 368 AAADGSIRGWDANDYSRKF 386
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
Query: 202 SIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGS 261
+ ++ SP +C DG + VWD + T + +GH C+D + + +G
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE 321
DN V+ WD + G+ L H S + L + G WL ++V + ++
Sbjct: 203 LDNT--VRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV----NK 255
Query: 322 VQTFRGHKKEASAVAWHPQHEG-LFSSGGADGSIMFW 357
++ H E+ ++ + G F S G D + W
Sbjct: 256 PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 181 GYIKYWQ-SNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLR 239
G I W N V+ FQGH + I S +K T D TVR WD E + L+
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL---REGRQLQ 219
Query: 240 GH--GADVKCVDWHPYKS-LIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQ 296
H + + + + P L V N + + + P Q LH H+S V+ L +
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ----LHLHESCVLSLKFAY 275
Query: 297 NGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAV 335
G W V+ +D+LL + +S Q+ KE+S+V
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSV 309
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 3/132 (2%)
Query: 198 GHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLI 257
GH I + F+ ++ + SDDGT+R+W + GH + W +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DDKV 303
Query: 258 VSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRN 317
+S S D V+LW K LA + +Q+G A D + V+D++
Sbjct: 304 ISCSMDGS--VRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361
Query: 318 LSSEVQTFRGHK 329
L+S+ ++ G++
Sbjct: 362 LNSKSRSLYGNR 373
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 150 TPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQ-SNMNNVKTFQGHKESIRGISF 208
TP G+ + H + + ++ ++++ G ++ W N N+ F GH +SI S+
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 297
Query: 209 SPSDSKFATCSDDGTVRVWDFYRCT 233
D K +CS DG+VR+W + T
Sbjct: 298 -VGDDKVISCSMDGSVRLWSLKQNT 321
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 21/213 (9%)
Query: 162 VRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDD 221
V + WSH+G +VT G ++ W + H+ I + ++ + + +
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170
Query: 222 GTVRVWDFYRCT-----EEKVLRG-------HGADVKC---VDWHPYKSLIVSGSKDNQQ 266
+W+ T E K G H D V+W ++ G K
Sbjct: 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK---G 227
Query: 267 PVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFR 326
+ ++ L H + L +N L++AS D L+++ N +S+ F
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ-NCFY 286
Query: 327 GHKKEASAVAWHPQHEGLFSSGGADGSIMFWHV 359
GH + + +W + + S DGS+ W +
Sbjct: 287 GHSQSIVSASWVGDDKVISCS--MDGSVRLWSL 317
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 103/283 (36%), Gaps = 76/283 (26%)
Query: 198 GHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKV--LRGHGADVKCVDW-HP-Y 253
H E I + ATCS D T+++++ T + + L GH V VDW HP +
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 254 KSLIVSGSKDNQQPVKLWDPKAGQ--ALATLHAHKSTVMDLAW--NQNGNWLVTASRDHL 309
+++ S S D + V +W + G+ +A H ++V + W ++ G L+ AS D
Sbjct: 67 GTILASCSYDGK--VXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 310 LKVFDIR-NLSSEVQTFRGHKKEASAVAWHP-------QHEGL-----FSSGGADGSIMF 356
+ V + + N ++ H ++ +W P +H G F +GGAD +
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 357 WHVGADKEV------------------------------------GCIPQAHDN------ 374
W +D + CI DN
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWK 244
Query: 375 -----------IIWTMAWHPLGHILATGSNDHASKFWTRNRLG 406
++W +W G++LA D+ W N G
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 283 HAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE-VQTFRGHKKEASAVAW-HPQ 340
+AH + D + G T S D +K+F++ + + + T GH+ V W HP+
Sbjct: 6 NAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 341 HEGLFSSGGADGSIMFW 357
+ +S DG + W
Sbjct: 66 FGTILASCSYDGKVXIW 82
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 214 KFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDP 273
+F + +G ++V D + ++ + H +++ + + P ++S S+D Q +K+W
Sbjct: 108 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQ--LKIWSV 165
Query: 274 KAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKV 312
K G TL H++TV D+A G +++AS D +++
Sbjct: 166 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 204
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 180 QGYIKYWQSNMNNVKTF-QGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVL 238
+G IK SN N + Q H I + F PS + S D +++W + + L
Sbjct: 115 EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 174
Query: 239 RGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLH 283
GH A V + ++S S D ++LW+ G + T +
Sbjct: 175 IGHRATVTDIAIIDRGRNVLSASLDG--TIRLWECGTGTTIHTFN 217
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 268 VKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRG 327
+K+ D AH S + L + +G L+++S+D LK++ +++ S +T G
Sbjct: 118 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPRTLIG 176
Query: 328 HKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGA 361
H+ + +A + + S+ DG+I W G
Sbjct: 177 HRATVTDIAIIDRGRNVLSA-SLDGTIRLWECGT 209
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 214 KFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDP 273
+F + +G ++V D + ++ + H +++ + + P ++S S+D Q +K+W
Sbjct: 111 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQ--LKIWSV 168
Query: 274 KAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKV 312
K G TL H++TV D+A G +++AS D +++
Sbjct: 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 180 QGYIKYWQSNMNNVKTF-QGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVL 238
+G IK SN N + Q H I + F PS + S D +++W + + L
Sbjct: 118 EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177
Query: 239 RGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLH 283
GH A V + ++S S D ++LW+ G + T +
Sbjct: 178 IGHRATVTDIAIIDRGRNVLSASLDG--TIRLWECGTGTTIHTFN 220
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 268 VKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRG 327
+K+ D AH S + L + +G L+++S+D LK++ +++ S +T G
Sbjct: 121 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPRTLIG 179
Query: 328 HKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGA 361
H+ + +A + + S+ DG+I W G
Sbjct: 180 HRATVTDIAIIDRGRNVLSA-SLDGTIRLWECGT 212
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 199 HKESIRGISFSPSDSK-FATCSDDGTVRVWDFYRCT-------EEKVLRGHGADVKCVDW 250
H+ S+ + + P D+ F + S D T++VWD EE V H + V
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS---- 153
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNW-LVTASRDHL 309
L+ G++ + V+L D K+G L H+ ++ ++W+ ++ L TAS D
Sbjct: 154 -TKHCLVAVGTRGPK--VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 310 LKVFDIRNLSSEVQTFRGH--KKEASAVAWHPQHEG 343
+K++D+R S + T H KK + + + H G
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 241 HGADVKCVDWHPYKS-LIVSGSKDNQQPVKLWDPKAGQAL------ATLHAHKSTVMDLA 293
H V+ V W+P+ + + S S D + +K+WD Q T+++H + +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFD--KTLKVWDTNTLQTADVFNFEETVYSHHMSPV--- 152
Query: 294 WNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGS 353
+ + +R +++ D+++ S +GH++E AV+W P+++ + ++ AD
Sbjct: 153 -STKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 354 IMFWHVGADKEVGCI 368
+ W V + GC+
Sbjct: 211 VKLWDV--RRASGCL 223
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 152 EGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYW-QSNMNNVKTFQGH--KESIRGISF 208
E AH+ V + ++ +GL ++T ++ W SN N G S +G+ F
Sbjct: 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF 297
Query: 209 SPS---DSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKD 263
+ S S+F T+ V+ Y + +L+GH V C + + SGS+D
Sbjct: 298 TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 31/124 (25%)
Query: 196 FQGHKESIRGISFSPS-DSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYK 254
QGH++ I +S+SP D AT S D V++WD V R G + +D H
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWD--------VRRASGCLIT-LDQH--- 229
Query: 255 SLIVSGSKDNQQPVKLWDPKAGQALATLH-AHKSTVMDLAWNQNGNWLVTASRDHLLKVF 313
+ K QA+ + + AH V L + +G L+T D+ ++++
Sbjct: 230 -----------------NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Query: 314 DIRN 317
+ N
Sbjct: 273 NSSN 276
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 96/252 (38%), Gaps = 34/252 (13%)
Query: 129 TTRFVKAATNKMRCPIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQS 188
TT +K P+ ++W E +R+A R + G++ + +
Sbjct: 91 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR--------------ERFGHVFLFDT 136
Query: 189 NMNNVKTFQGHKESIRGISFSPSDS-KFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKC 247
+N G ++ + F PS + + SDD TV +++ + H V
Sbjct: 137 GTSN-GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 195
Query: 248 VDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLH-------AHKSTVMDLAWNQNGNW 300
V ++P SL S D + L++ G AH +V L W+ +G
Sbjct: 196 VRYNPDGSLFASTGGDGT--IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253
Query: 301 LVTASRDHLLKVFDIRNLSSEVQTFRGHKKEAS--AVAWHPQHEGLFSSGGADGSIMFWH 358
+ +AS D +K++++ L E G + E + W Q S A+G I F
Sbjct: 254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ---ALVSISANGFINF-- 308
Query: 359 VGADKEVGCIPQ 370
+ E+G I Q
Sbjct: 309 --VNPELGSIDQ 318
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 13/227 (5%)
Query: 189 NMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTE--EKVLRGHGADVK 246
++ + + + H SPS A+ G VR+WD + T + + VK
Sbjct: 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 107
Query: 247 CVDWHPYKSLI--VSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTA 304
+ W I V ++ V L+D T A +D ++ +++
Sbjct: 108 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR-IISG 166
Query: 305 SRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKE 364
S D+ + +F+ + TF H K +V ++P LF+S G DG+I+ ++ +
Sbjct: 167 SDDNTVAIFEGPPFKFK-STFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTK 224
Query: 365 VGCIPQ------AHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRL 405
G AH ++ + W P G +A+ S D K W L
Sbjct: 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 78/378 (20%), Positives = 144/378 (38%), Gaps = 106/378 (28%)
Query: 144 IFSMTWTPEGRRLAHDCAVRHM---------------------------VWSHNGLWMVT 176
+F +TW+P+G ++A A + + +W+ L ++
Sbjct: 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301
Query: 177 SDHQGYIKYWQSNMNNVKTFQ-GHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEE 235
++ G+I + + ++ + GH ++I +S S + +G + WD
Sbjct: 302 AN--GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359
Query: 236 KVL------------RGHGADVKCVDWHPYKSLIVSG-----------SKDNQQPVKLWD 272
+V D+ V W + ++ +G +K + QP+ L
Sbjct: 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 419
Query: 273 PKAGQ-ALATLHAH-------KSTVMDLAWNQ-------NGNWLVTASRDHLLKVFDIRN 317
G A+A + H K T + +++N + ++ +D + V+ +
Sbjct: 420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479
Query: 318 LS-SEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQ------ 370
S SEV+T H E ++VA FS+ GA + V D+ IP
Sbjct: 480 ASVSEVKTIV-HPAEITSVA--------FSNNGA------FLVATDQSRKVIPYSVANNF 524
Query: 371 --AHDNIIWT--------MAWHPLGHILATGSNDHASKFWTRNRLGDPMRDRYNQKGLAH 420
AH N WT ++W P LATGS D++ W N+ P KG AH
Sbjct: 525 ELAHTNS-WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK---PSDHPIIIKG-AH 579
Query: 421 CITGVYNEEMELNDSAVI 438
++ V N + LN++ ++
Sbjct: 580 AMSSV-NSVIWLNETTIV 596
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 45/197 (22%)
Query: 199 HKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIV 258
H S+ G+++SP +K A+ S D T+++W+ EK + P + I
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI-------------PVGTRI- 283
Query: 259 SGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNL 318
++QQ +W +A LV+ S + + F L
Sbjct: 284 ----EDQQLGIIWTKQA-------------------------LVSISANGFIN-FVNPEL 313
Query: 319 SSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWT 378
S Q GH K +A++ + LFS+ A+G I W + P H +I
Sbjct: 314 GSIDQVRYGHNKAITALSSSADGKTLFSA-DAEGHINSWDISTGISNRVFPDVHATMITG 372
Query: 379 MAWHPLGHILATGSNDH 395
+ G + +DH
Sbjct: 373 IKTTSKGDLFTVSWDDH 389
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 241 HGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHK-STVMDLAWNQNGN 299
H A V CV W P + +GS DN V + + + AH S+V + W N
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNET 593
Query: 300 WLVTASRDHLLKVFDI 315
+V+A +D +K +++
Sbjct: 594 TIVSAGQDSNIKFWNV 609
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 185 YWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKV--LRGHG 242
Y+Q + GH+ + + ++ +CS D + VW Y E++ L GH
Sbjct: 17 YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW--YSLNGERLGTLDGHT 74
Query: 243 ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALAT 281
+ +D + V+GS D +KLWD GQ +AT
Sbjct: 75 GTIWSIDVDCFTKYCVTGSAD--YSIKLWDVSNGQCVAT 111
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 325 FRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPL 384
GH++ + V ++ + + LFS D S W+ + +G + H IW++
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCS-KDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF 85
Query: 385 GHILATGSNDHASKFW 400
TGS D++ K W
Sbjct: 86 TKYCVTGSADYSIKLW 101
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 34/275 (12%)
Query: 122 DNATNAVTTRFVKAATNKMRCPIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQG 181
D +N+V VK+ + PI ++W EGRRL C V D+ G
Sbjct: 98 DKESNSVEVN-VKSEFQVLAGPISDISWDFEGRRL---CVVGE-----------GRDNFG 142
Query: 182 YIKYWQSNMNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWD---FYRCTEEKV 237
W S N++ GH + I S + T DDG+V + F ++
Sbjct: 143 VFISWDSG-NSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPPFKFSASDRT 201
Query: 238 LRGHGADVKCVDWHPYKS--LIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTV----MD 291
G+ V+ V++ P +I GS + + +D K+G+ L + + V
Sbjct: 202 HHKQGSFVRDVEFSPDSGEFVITVGS---DRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258
Query: 292 LAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEAS--AVAWHPQHEGLFSSGG 349
L+W + T D ++V+D+ S VQ + K++ V G S
Sbjct: 259 LSW-LDSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 316
Query: 350 ADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPL 384
DG++ F+ +G D+ + I H+ I + +PL
Sbjct: 317 LDGTLNFYELGHDEVLKTI-SGHNKGITALTVNPL 350
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 18/182 (9%)
Query: 188 SNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGAD-VK 246
S N T + + I++ S F C DDG +V + T GHG+ V
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT------GHGSSVVT 68
Query: 247 CVDWHPYKSLIVSGSKDNQQPVKLW----DPKAGQALATLHAH----KSTVMDLAWNQNG 298
V + P K S D V +W D ++ + + + D++W+ G
Sbjct: 69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG 128
Query: 299 NWL--VTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMF 356
L V RD+ VF + + + GH + +A + G DGS++F
Sbjct: 129 RRLCVVGEGRDN-FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVF 187
Query: 357 WH 358
+
Sbjct: 188 YQ 189
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 38/296 (12%)
Query: 122 DNATNAVTTRFVKAATNKMRCPIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQG 181
D +N+V VK+ + PI ++W EGRRL C V D+ G
Sbjct: 98 DKESNSVEVN-VKSEFQVLAGPISDISWDFEGRRL---CVVGE-----------GRDNFG 142
Query: 182 YIKYWQSNMNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWD---FYRCTEEKV 237
W S N++ GH + I S + T DDG+V + F ++
Sbjct: 143 VFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 201
Query: 238 LRGHGADVKCVDWHPYKS--LIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTV----MD 291
G+ V+ V++ P +I GS + + +D K+G+ L + + V
Sbjct: 202 HHKQGSFVRDVEFSPDSGEFVITVGS---DRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258
Query: 292 LAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEAS--AVAWHPQHEGLFSSGG 349
L+W + T D ++V+D+ S VQ + K++ V G S
Sbjct: 259 LSW-LDSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 316
Query: 350 ADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWTRNRL 405
DG++ F+ +G D+ + I H+ I + +P L +GS D W+ + +
Sbjct: 317 LDGTLNFYELGHDEVLKTI-SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM 367
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 18/182 (9%)
Query: 188 SNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGAD-VK 246
S N T + + I++ S F C DDG +V + T GHG+ V
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT------GHGSSVVT 68
Query: 247 CVDWHPYKSLIVSGSKDNQQPVKLW----DPKAGQALATLHAH----KSTVMDLAWNQNG 298
V + P K S D V +W D ++ + + + D++W+ G
Sbjct: 69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG 128
Query: 299 NWL--VTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMF 356
L V RD+ VF + + + GH + +A + G DGS++F
Sbjct: 129 RRLCVVGEGRDN-FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187
Query: 357 WH 358
+
Sbjct: 188 YQ 189
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 28/231 (12%)
Query: 194 KTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDW--H 251
K Q H + + +S SK T S D T ++WD ++ + H A VK + W
Sbjct: 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKA 138
Query: 252 PYKSLIVSGSKDNQQPVKLWDPKAGQALATLHA-HKSTVMDLAWNQNGNWLVTASRDHLL 310
P S +++GS D + +K WD ++ + L + D+ + V A+ + L
Sbjct: 139 PNYSCVMTGSWD--KTLKFWDTRSSNPMMVLQLPERCYCADVIYPM----AVVATAERGL 192
Query: 311 KVFDIRNLSSEVQTFRG---HKKEASAVAWHPQHEGL-FSSGGADGSIMFWHVG------ 360
V+ + N SE + H+ A+ Q++ F+ G +G + ++
Sbjct: 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252
Query: 361 ------ADKEVGCIPQAHDNI--IWTMAWHPLGHILATGSNDHASKFWTRN 403
+ G A +I + +A+HP+ LAT +D FW ++
Sbjct: 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 245 VKCVDWHPYK---SLIVSGSKDNQQPVKLWDPK-AGQAL-ATLHAHKSTVMDLAWNQNGN 299
+ C+ + P + +++GS N V+ W+ + +GQ + H V+D+ W+ +G+
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWAND--VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 300 WLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAW--HPQHEGLFSSGGADGSIMFW 357
+ TAS D K++D+ S++ H + W P + + +G D ++ FW
Sbjct: 100 KVFTASCDKTAKMWDLS--SNQAIQIAQHDAPVKTIHWIKAPNYSCVM-TGSWDKTLKFW 156
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 28/269 (10%)
Query: 151 PEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISF-- 208
P+ +++ H V + WS +G + T+ K W + N H ++ I +
Sbjct: 79 PKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK 137
Query: 209 SPSDSKFATCSDDGTVRVWDFYRCTEEKVL----RGHGADV---KCVDWHPYKSLIVSGS 261
+P+ S T S D T++ WD VL R + ADV V + LIV
Sbjct: 138 APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQL 197
Query: 262 KDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSE 321
++ QP + + L H + D G L + + + N + +
Sbjct: 198 EN--QPSEF--RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD 253
Query: 322 VQTFRGHKKEAS------------AVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIP 369
TF+ H+ + +A+HP H G ++ G+DG FW A ++
Sbjct: 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTKLKTSE 312
Query: 370 QAHDNIIWTMAWHPLGHILATGSNDHASK 398
Q D I ++ G+I A S+ SK
Sbjct: 313 QL-DQPISACCFNHNGNIFAYASSYDWSK 340
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWN-QNGNWLVTASRDHL 309
HP L V+GS+ +++ +P Q + H + + +L ++ ++ N L++ S+DH
Sbjct: 121 HPL--LAVAGSRG---IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA 175
Query: 310 LKVFDIR--NLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGC 367
L++++I+ L + GH+ E + + E + S G D S+ W + + + +
Sbjct: 176 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINSKRMMNA 234
Query: 368 IPQAHD 373
I +++D
Sbjct: 235 IKESYD 240
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCI--PQAHDNIIWTM 379
++ + GH + + +HP+ L S D ++ W++ D V + H + + +
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 380 AWHPLGHILATGSNDHASKFWTRN--RLGDPMRDRYN 414
+ LG + + DH+ K W N R+ + +++ Y+
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 240
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 190 MNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEEKV---LRGHGADV 245
M +K + GH +I + F P D + + S D +R+W+ T + + GH +V
Sbjct: 141 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 200
Query: 246 KCVDWHPYKSLIVSGSKDNQQPVKLW 271
D+ I+S D+ +KLW
Sbjct: 201 LSADYDLLGEKIMSCGMDHS--LKLW 224
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWN-QNGNWLVTASRDHL 309
HP L V+GS+ +++ +P Q + H + + +L ++ ++ N L++ S+DH
Sbjct: 84 HPL--LAVAGSRG---IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA 138
Query: 310 LKVFDIR--NLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGC 367
L++++I+ L + GH+ E + + E + S G D S+ W + + + +
Sbjct: 139 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINSKRMMNA 197
Query: 368 IPQAHD 373
I +++D
Sbjct: 198 IKESYD 203
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCI--PQAHDNIIWTM 379
++ + GH + + +HP+ L S D ++ W++ D V + H + + +
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 380 AWHPLGHILATGSNDHASKFWTRN--RLGDPMRDRYN 414
+ LG + + DH+ K W N R+ + +++ Y+
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 190 MNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEEKV---LRGHGADV 245
M +K + GH +I + F P D + + S D +R+W+ T + + GH +V
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 163
Query: 246 KCVDWHPYKSLIVSGSKDNQQPVKLW 271
D+ I+S D+ +KLW
Sbjct: 164 LSADYDLLGEKIMSCGMDHS--LKLW 187
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWN-QNGNWLVTASRDHL 309
HP L V+GS+ +++ +P Q + H + + +L ++ ++ N L++ S+DH
Sbjct: 85 HPL--LAVAGSRG---IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA 139
Query: 310 LKVFDIR--NLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGC 367
L++++I+ L + GH+ E + + E + S G D S+ W + + + +
Sbjct: 140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINSKRMMNA 198
Query: 368 IPQAHD 373
I +++D
Sbjct: 199 IKESYD 204
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCI--PQAHDNIIWTM 379
++ + GH + + +HP+ L S D ++ W++ D V + H + + +
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 380 AWHPLGHILATGSNDHASKFWTRN--RLGDPMRDRYN 414
+ LG + + DH+ K W N R+ + +++ Y+
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 190 MNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEEKV---LRGHGADV 245
M +K + GH +I + F P D + + S D +R+W+ T + + GH +V
Sbjct: 105 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 164
Query: 246 KCVDWHPYKSLIVSGSKDNQQPVKLW 271
D+ I+S D+ +KLW
Sbjct: 165 LSADYDLLGEKIMSCGMDHS--LKLW 188
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 56/242 (23%)
Query: 198 GHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVL----RGHGADVKCVDWHP- 252
GH + + + + ATCS D ++V+ + T L R H + + +DW
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 253 -YKSLIVSGSKDNQQPVKLWDPKAGQ---------ALATLHAHKSTVMDLAW--NQNGNW 300
Y +I S S D + VKLW+ Q L TL+ K ++ + + G
Sbjct: 69 EYGRIIASASYD--KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK 126
Query: 301 LVTASRDHLLKVF------DIRN--LSSEVQTFR----GHKKEASAVAWHPQ-------- 340
L D +L+++ D+R+ L+SE++ H + ++W P
Sbjct: 127 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA 186
Query: 341 ----HEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHP-LG---HILATGS 392
+ + G DG + HV A +P H ++I +++W P +G ++ATG
Sbjct: 187 VSALEQAIIYQRGKDGKL---HVAAK-----LP-GHKSLIRSISWAPSIGRWYQLIATGC 237
Query: 393 ND 394
D
Sbjct: 238 KD 239
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 56/242 (23%)
Query: 198 GHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVL----RGHGADVKCVDWHP- 252
GH + + + + ATCS D ++V+ + T L R H + + +DW
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 253 -YKSLIVSGSKDNQQPVKLWDPKAGQ---------ALATLHAHKSTVMDLAW--NQNGNW 300
Y +I S S D + VKLW+ Q L TL+ K ++ + + G
Sbjct: 67 EYGRIIASASYD--KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK 124
Query: 301 LVTASRDHLLKVF------DIRN--LSSEVQTFR----GHKKEASAVAWHPQ-------- 340
L D +L+++ D+R+ L+SE++ H + ++W P
Sbjct: 125 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA 184
Query: 341 ----HEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHP-LG---HILATGS 392
+ + G DG + HV A +P H ++I +++W P +G ++ATG
Sbjct: 185 VSALEQAIIYQRGKDGKL---HVAAK-----LP-GHKSLIRSISWAPSIGRWYQLIATGC 235
Query: 393 ND 394
D
Sbjct: 236 KD 237
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWN-QNGNWLVTASRDHL 309
HP L V+GS+ +++ +P Q + H + + +L ++ ++ N L++ S+DH
Sbjct: 80 HPL--LAVAGSRG---IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA 134
Query: 310 LKVFDIR--NLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGC 367
L++++I+ L + GH+ E + + E + S G D S+ W + + + +
Sbjct: 135 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINSKRMMNA 193
Query: 368 IPQAHD 373
I +++D
Sbjct: 194 IKESYD 199
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCI--PQAHDNIIWTM 379
++ + GH + + +HP+ L S D ++ W++ D V + H + + +
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 380 AWHPLGHILATGSNDHASKFWTRN--RLGDPMRDRYN 414
+ LG + + DH+ K W N R+ + +++ Y+
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 199
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 190 MNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEEKV---LRGHGADV 245
M +K + GH +I + F P D + + S D +R+W+ T + + GH +V
Sbjct: 100 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 159
Query: 246 KCVDWHPYKSLIVSGSKDNQQPVKLW 271
D+ I+S D+ +KLW
Sbjct: 160 LSADYDLLGEKIMSCGMDHS--LKLW 183
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 251 HPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWN-QNGNWLVTASRDHL 309
HP L V+GS+ +++ +P Q + H + + +L ++ ++ N L++ S+DH
Sbjct: 84 HPL--LAVAGSRG---IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA 138
Query: 310 LKVFDIR--NLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGC 367
L++++I+ L + GH+ E + + E + S G D S+ W + + + +
Sbjct: 139 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINSKRMMNA 197
Query: 368 IPQAHD 373
I +++D
Sbjct: 198 IKESYD 203
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 322 VQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCI--PQAHDNIIWTM 379
++ + GH + + +HP+ L S D ++ W++ D V + H + + +
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 380 AWHPLGHILATGSNDHASKFWTRN--RLGDPMRDRYN 414
+ LG + + DH+ K W N R+ + +++ Y+
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 190 MNNVKTFQGHKESIRGISFSPSD-SKFATCSDDGTVRVWDFYRCTEEKV---LRGHGADV 245
M +K + GH +I + F P D + + S D +R+W+ T + + GH +V
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 163
Query: 246 KCVDWHPYKSLIVSGSKDNQQPVKLW 271
D+ I+S D+ +KLW
Sbjct: 164 LSADYDLLGEKIMSCGMDHS--LKLW 187
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 310 LKVFDIR---NLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVG 366
LK++D R N S++ + G + V HP + + ++GG DG + W V
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 367 CIPQAHDNIIWTMAWHP 383
+ +AH+ +W + +HP
Sbjct: 274 SLLKAHEAEMWEVHFHP 290
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 144 IFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNN--VKTFQGHKE 201
I S+T G R+ C RH H + T G + W V + H+
Sbjct: 229 ILSLT----GDRVPLHCVDRHPNQQHV---VATGGQDGMLSIWDVRQGTMPVSLLKAHEA 281
Query: 202 SIRGISFSPSDSK-FATCSDDGTVRVWDFYRCTEEK 236
+ + F PS+ + TCS+DG++ WD EK
Sbjct: 282 EMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEK 317
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 56/242 (23%)
Query: 198 GHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVL----RGHGADVKCVDWHP- 252
GH + + + + ATCS D ++V+ + T L R H + + +DW
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 253 -YKSLIVSGSKDNQQPVKLWDPKAGQ---------ALATLHAHKSTV--MDLAWNQNGNW 300
Y +I S S D + VKLW+ Q L TL+ K ++ + A G
Sbjct: 69 EYGRIIASASYD--KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK 126
Query: 301 LVTASRDHLLKVF------DIRN--LSSEVQTFR----GHKKEASAVAWHPQ-------- 340
L D +L+++ D+R+ L+SE + H + ++W P
Sbjct: 127 LACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLA 186
Query: 341 ----HEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHP-LG---HILATGS 392
+ + G DG + HV A +P H ++I +++W P +G ++ATG
Sbjct: 187 VSALEQAIIYQRGKDGKL---HVAAK-----LP-GHKSLIRSISWAPSIGRWYQLIATGC 237
Query: 393 ND 394
D
Sbjct: 238 KD 239
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 193 VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEK---VLRGHGADVKCVD 249
V + H + GI ++P ++ TC D VW T + +LR + A +CV
Sbjct: 45 VHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA-ARCVR 103
Query: 250 WHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHK---STVMDLAWNQNGNWLVTASR 306
W P + GS + ++ + + H K STV+ L W+ N L S
Sbjct: 104 WAPNEKKFAVGSGSRVISICYFEQENDWWVCK-HIKKPIRSTVLSLDWHPNSVLLAAGSC 162
Query: 307 DHLLKVF 313
D ++F
Sbjct: 163 DFKCRIF 169
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 193 VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEK---VLRGHGADVKCVD 249
V + H + G+ ++P ++ TC D VW T + +LR + A +CV
Sbjct: 45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA-ARCVR 103
Query: 250 WHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHK---STVMDLAWNQNGNWLVTASR 306
W P + GS + ++ + + H K STV+ L W+ N L S
Sbjct: 104 WAPNEKKFAVGSGSRVISICYFEQENDWWVCK-HIKKPIRSTVLSLDWHPNSVLLAAGSC 162
Query: 307 DHLLKVF 313
D ++F
Sbjct: 163 DFKCRIF 169
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 29/175 (16%)
Query: 113 HMLPPPSFEDNATNAVTTRFVKA-ATNKMRCPIFSMTWTPEGRRLA-HDCAVRHMVWS-- 168
H+LP PS+E +A N+ T FV ATN++ R + HD V + W+
Sbjct: 8 HILPKPSYE-HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK 66
Query: 169 HNGLWMVTSDHQGYI------KYWQSNM-----NNVKTFQGHKESIRGISFSPSDSKFAT 217
N + + D Y+ W+ + N TF + +SP++ KFA
Sbjct: 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATF---------VRWSPNEDKFAV 117
Query: 218 CSDDGTVRVWDFYR----CTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPV 268
S + V F + + + R + + +DWHP L+ +G D + V
Sbjct: 118 GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 207 SFSPSDSKFATCSDDGTVRVW--DFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDN 264
+F+ ++F T + V ++ D + H V CVDW P + IV+ S+D
Sbjct: 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR 77
Query: 265 QQPV--KLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKV--FDIRN--- 317
V K D Q L L +++ + W+ N + S ++ V F+ N
Sbjct: 78 NAYVYEKRPDGTWKQTLVLLRLNRAATF-VRWSPNEDKFAVGSGARVISVCYFEQENDWW 136
Query: 318 LSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGAD 351
+S ++ R + ++ WHP + L ++G AD
Sbjct: 137 VSKHLK--RPLRSTILSLDWHPNNV-LLAAGCAD 167
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 4/145 (2%)
Query: 254 KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVF 313
++ V+ + NQ + D + T H V + W N +VT S+D V+
Sbjct: 23 RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82
Query: 314 DIRNLSSEVQTFRGHK--KEASAVAWHPQHEGLFSSGGADG-SIMFWHVGADKEVGC-IP 369
+ R + QT + + A+ V W P + GA S+ ++ D V +
Sbjct: 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK 142
Query: 370 QAHDNIIWTMAWHPLGHILATGSND 394
+ + I ++ WHP +LA G D
Sbjct: 143 RPLRSTILSLDWHPNNVLLAAGCAD 167
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 81/209 (38%), Gaps = 27/209 (12%)
Query: 173 WMVTSDHQGYIKYWQSNMNN--VKTFQGHKESIRGISFSPSDS------KFATCSDDGTV 224
++ T D G + W V + +GHKE I I + T S DGTV
Sbjct: 82 YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141
Query: 225 RVWDFYR-----CTEEKVLRGHGADVKCVDW---HPYKSLIVSGSKDNQQPVKLWDPKAG 276
+VWD + E V + D V + + + +V DN +KL+D +
Sbjct: 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD-IKLFDLR-N 199
Query: 277 QALATLHAHKSTVMDLAWNQNG---NWLVTASRDHLLKVFDIRNLSSEVQTF-----RGH 328
AL K+ V L +++ N LV S + VFD+R + F + H
Sbjct: 200 MALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAH 258
Query: 329 KKEASAVAWHPQHEGLFSSGGADGSIMFW 357
K V PQ+ LF + G G + W
Sbjct: 259 KSTVWQVRHLPQNRELFLTAGGAGGLHLW 287
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 216 ATCSDDGTVRVWDF------YRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQ-QPV 268
AT ++GTV++ + Y + + + ++ V + P SL+ N +
Sbjct: 211 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 270
Query: 269 KLWDPKAGQALATL-------------HAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDI 315
L++ + G+ + +L AH S VM L++N +G L +A D L+ +D+
Sbjct: 271 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
Query: 316 R 316
+
Sbjct: 331 K 331
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 216 ATCSDDGTVRVWDF------YRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQ-QPV 268
AT ++GTV++ + Y + + + ++ V + P SL+ N +
Sbjct: 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 260
Query: 269 KLWDPKAGQALATL-------------HAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDI 315
L++ + G+ + +L AH S VM L++N +G L +A D L+ +D+
Sbjct: 261 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
Query: 316 R 316
+
Sbjct: 321 K 321
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 353 SIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHA-SKFWTRNRLGDPMRD 411
S +F D+EV + H+ + AW ATG+ H SKF T N+ +
Sbjct: 129 SPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYT--LET 186
Query: 412 RYNQKGL 418
R NQ+G+
Sbjct: 187 RPNQEGI 193
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 353 SIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHA-SKFWTRNRLGDPMRD 411
S +F D+EV + H+ + AW ATG+ H SKF T N+ +
Sbjct: 142 SPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYT--LET 199
Query: 412 RYNQKGL 418
R NQ+G+
Sbjct: 200 RPNQEGI 206
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 353 SIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHA-SKFWTRNRLGDPMRD 411
S +F D+EV + H+ + AW ATG+ H SKF T N+ +
Sbjct: 142 SPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYT--LET 199
Query: 412 RYNQKGL 418
R NQ+G+
Sbjct: 200 RPNQEGI 206
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 353 SIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHA-SKFWTRNRLGDPMRD 411
S +F D+EV + H+ + AW ATG+ H SKF T N+ +
Sbjct: 142 SPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYT--LET 199
Query: 412 RYNQKGL 418
R NQ+G+
Sbjct: 200 RPNQEGI 206
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 25/147 (17%)
Query: 158 HDCAVRHMVWSHNGLW-MVTSDHQGYIKYWQSNMNNVKTFQG------HKESIRGISFSP 210
H V H ++ W M TS +K W ++ N+K H++ + F+P
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLW--DLRNIKDKNSYIAEMPHEKPVNAAYFNP 259
Query: 211 SDS-KFATCSDDGTVRVWDFYRCTEEKVL-------RGHGADVKCVDWHPYKSLIVSGSK 262
+DS K T +RV+ Y ++ + H +K WHP LIV+G
Sbjct: 260 TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT-WHPMYDLIVAGRY 318
Query: 263 -------DNQQPVKLWDPKAGQALATL 282
++++ + ++D +G + L
Sbjct: 319 PDDQLLLNDKRTIDIYDANSGGLVHQL 345
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 353 SIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHA-SKFWTRNRLGDPMRD 411
S +F D+EV + H+ + AW ATG+ H SKF T N+ +
Sbjct: 171 SPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYT--LET 228
Query: 412 RYNQKGL 418
R NQ+G+
Sbjct: 229 RPNQEGI 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,280,189
Number of Sequences: 62578
Number of extensions: 868485
Number of successful extensions: 3132
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2084
Number of HSP's gapped (non-prelim): 443
length of query: 877
length of database: 14,973,337
effective HSP length: 107
effective length of query: 770
effective length of database: 8,277,491
effective search space: 6373668070
effective search space used: 6373668070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)