RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13969
(877 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 221 bits (564), Expect = 1e-65
Identities = 79/287 (27%), Positives = 133/287 (46%), Gaps = 34/287 (11%)
Query: 141 RCPIFSMTWTPEGRRLA------------------------HDCAVRHMVWSHNGLWMVT 176
+ + ++P+G+ LA H VR + S +G ++ +
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 177 S--DHQGYIKYWQSNMNN-VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCT 233
D I+ W V+T GH + ++FSP ++ S D T++VWD
Sbjct: 69 GSSDKT--IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126
Query: 234 EEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLA 293
LRGH V V + P + + S S+D +KLWD + G+ +ATL H V +A
Sbjct: 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT--IKLWDLRTGKCVATLTGHTGEVNSVA 184
Query: 294 WNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGS 353
++ +G L+++S D +K++D+ + T RGH+ ++VA+ P L +SG DG+
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGT 242
Query: 354 IMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
I W + + V + H N + ++AW P G LA+GS D + W
Sbjct: 243 IRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
Score = 201 bits (514), Expect = 1e-58
Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 6/244 (2%)
Query: 158 HDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNNVK-TFQGHKESIRGISFSPSDSKFA 216
H V + +S +G + T G IK W + T +GH +R ++ S + A
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 217 TCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAG 276
+ S D T+R+WD + L GH + V V + P ++ S S+D +K+WD + G
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT--IKVWDVETG 125
Query: 277 QALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVA 336
+ L TL H V +A++ +G ++ ++S+D +K++D+R V T GH E ++VA
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVA 184
Query: 337 WHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHA 396
+ P E L SS DG+I W + K +G + + H+N + ++A+ P G++LA+GS D
Sbjct: 185 FSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSPDGYLLASGSEDGT 242
Query: 397 SKFW 400
+ W
Sbjct: 243 IRVW 246
Score = 175 bits (446), Expect = 3e-49
Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 5/209 (2%)
Query: 192 NVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWH 251
+T +GH + ++FSP AT S DGT++VWD + L+GH V+ V
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 252 PYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLK 311
+ + SGS D ++LWD + G+ + TL H S V +A++ +G L ++SRD +K
Sbjct: 61 ADGTYLASGSSDKT--IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118
Query: 312 VFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQA 371
V+D+ + T RGH ++VA+ P +S DG+I W + K V +
Sbjct: 119 VWDVET-GKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLT-G 175
Query: 372 HDNIIWTMAWHPLGHILATGSNDHASKFW 400
H + ++A+ P G L + S+D K W
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
Score = 142 bits (360), Expect = 1e-37
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMNN---VKTFQGHKESIRGISFSPSDS 213
H V + +S +G ++ +S G IK W ++ V T GH + ++FSP
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGE 190
Query: 214 KFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDP 273
K + S DGT+++WD LRGH V V + P L+ SGS+D +++WD
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT--IRVWDL 248
Query: 274 KAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD 314
+ G+ + TL H ++V LAW+ +G L + S D ++++D
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 165 bits (418), Expect = 6e-44
Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 14/256 (5%)
Query: 158 HDCAVRHMVWSH---NGLWMVTSDHQGYIKYW--QSNMNNVKTFQGHKESIRGISFSPSD 212
HD +V + S N + + +S G +K W + ++T +GH ES+ ++FSP
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167
Query: 213 SKFATCSD-DGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPY-KSLIVSGSKDNQQPVKL 270
A+ S DGT+++WD L GH V + + P LI SGS D ++L
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT--IRL 225
Query: 271 WDPKAGQALA-TLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHK 329
WD G+ L TL H +V+ +++ +G+ L + S D ++++D+R+ SS ++T GH
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVV-SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284
Query: 330 KEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEV-GCIPQAHDNIIWTMAWHPLGHIL 388
+VA+ P + L +SG +DG++ W + K + + H+ + ++++ P G +L
Sbjct: 285 SSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343
Query: 389 ATG-SNDHASKFWTRN 403
+G S+D + W
Sbjct: 344 VSGGSDDGTIRLWDLR 359
Score = 146 bits (367), Expect = 3e-37
Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 11/274 (4%)
Query: 138 NKMRCPIFSMTWTPEGRRLAHDCAVRHMVWSHNGLWMVTSDHQ-GYIKYWQSNM-NNVKT 195
++ S H +V + +S +G + + G IK W + T
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193
Query: 196 FQGHKESIRGISFSPSDSK-FATCSDDGTVRVWDF-YRCTEEKVLRGHGADVKCVDWHPY 253
GH + + ++FSP A+ S DGT+R+WD L GH +D + P
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH-SDSVVSSFSPD 252
Query: 254 KSLIVSGSKDNQQPVKLWDPKAG-QALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKV 312
SL+ SGS D ++LWD ++ L TL H S+V+ +A++ +G L + S D +++
Sbjct: 253 GSLLASGSSDGT--IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310
Query: 313 FDIRNLSSEVQ-TFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQA 371
+D+ T +GH+ S++++ P L S G DG+I W + K + +
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370
Query: 372 HDNIIWTMAWHPLGHILATGSNDHASKFWTRNRL 405
+ + ++++ P G ++++GS D + W +
Sbjct: 371 SN--VLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402
Score = 139 bits (350), Expect = 5e-35
Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 10/262 (3%)
Query: 167 WSHNGLWMVTSDHQGYIKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRV 226
S +G+ ++ + + +GH++SI I+FSP + S DGT+++
Sbjct: 35 SSESGILLLALLSDSLVSLPDLSSL---LLRGHEDSITSIAFSPDGELLLSGSSDGTIKL 91
Query: 227 WDF-YRCTEEKVLRG-HGADVKCVDW-HPYKSLIVSGSKDNQQPVKLWDP-KAGQALATL 282
WD K L G H + V + P + I+ S VKLWD G+ + TL
Sbjct: 92 WDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151
Query: 283 HAHKSTVMDLAWNQNGNWLVTASR-DHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQH 341
H +V LA++ +G L + S D +K++D+R + T GH S++A+ P
Sbjct: 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDG 210
Query: 342 EGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFWT 401
L +SG +DG+I W + K + H + + + ++ P G +LA+GS+D + W
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWD 269
Query: 402 RNRLGDPMRDRYNQKGLAHCIT 423
+R +
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVA 291
Score = 137 bits (344), Expect = 3e-34
Identities = 73/255 (28%), Positives = 126/255 (49%), Gaps = 14/255 (5%)
Query: 158 HDCAVRHMVWSHNGLWMVTS-DHQGYIKYWQSNMNNVK--TFQGHKESIRGISFSPSDSK 214
H V + +S +G ++ S G I+ W + + T GH +S+ SFSP S
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL 255
Query: 215 FATCSDDGTVRVWDFYRCTEE-KVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDP 273
A+ S DGT+R+WD + + L GH + V V + P L+ SGS D V+LWD
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG--TVRLWDL 313
Query: 274 KAG--QALATLHAHKSTVMDLAWNQNGNWLVTA-SRDHLLKVFDIRNLSSEVQTFRGHKK 330
+ G + TL H+ V L+++ +G+ LV+ S D ++++D+R ++T GH
Sbjct: 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT-GKPLKTLEGHS- 371
Query: 331 EASAVAWHPQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILAT 390
+V++ P + SSG DG++ W + + + H + + ++ + P G LA+
Sbjct: 372 NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD-GHTSRVTSLDFSPDGKSLAS 429
Query: 391 GSNDHASKFWTRNRL 405
GS+D+ + W
Sbjct: 430 GSSDNTIRLWDLKTS 444
Score = 78.2 bits (191), Expect = 6e-15
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 143 PIFSMTWTPEGRRLA--------------------------HDCAVRHMVWSHNGLWMVT 176
+ S+ ++P+G+ LA H+ V + +S +G +V+
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345
Query: 177 SDHQ-GYIKYWQSNMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEE 235
G I+ W ++ +SFSP ++ S DGTVR+WD +
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405
Query: 236 KVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPK 274
+ L GH + V +D+ P + SGS DN ++LWD K
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNT--IRLWDLK 442
Score = 52.4 bits (124), Expect = 7e-07
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 161 AVRHMVWSHNGLWMVTSDHQGYIKYW-QSNMNNVKTFQGHKESIRGISFSPSDSKFATCS 219
V + +S +G + + G ++ W S + ++ GH + + FSP A+ S
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431
Query: 220 DDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDN 264
D T+R+WD +K V + P ++ S S D
Sbjct: 432 SDNTIRLWDLKTS------------LKSVSFSPDGKVLASKSSDL 464
Score = 38.5 bits (88), Expect = 0.014
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 285 HKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHEGL 344
+ +++ L +++G L+ D L+ + D+ + RGH+ +++A+ P E L
Sbjct: 26 NSLSLLSLGSSESGILLLALLSDSLVSLPDLSS-----LLLRGHEDSITSIAFSPDGELL 80
Query: 345 FSSGGADGSIMFWHV-GADKEVGCIPQAHDNIIWTMAW-HPLGHILAT--GSNDHASKFW 400
SG +DG+I W + +K + + HD+ + +A P G+ + S D K W
Sbjct: 81 L-SGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 58.5 bits (142), Expect = 2e-11
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 193 VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWD 228
++T +GH + ++FSP + A+ SDDGTVRVWD
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 50.4 bits (121), Expect = 2e-08
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 276 GQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD 314
G+ L TL H V +A++ +GN L + S D ++V+D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 48.9 bits (117), Expect = 6e-08
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 232 CTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWD 272
+ L+GH V V + P +L+ SGS D V++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGT--VRVWD 39
Score = 42.7 bits (101), Expect = 1e-05
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 320 SEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWH 358
++T +GH ++VA+ P L +SG DG++ W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39
Score = 40.4 bits (95), Expect = 7e-05
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 370 QAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+ H + ++A+ P G++LA+GS+D + W
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 31.9 bits (73), Expect = 0.082
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYW 186
H V + +S +G + + G ++ W
Sbjct: 9 GHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 58.5 bits (142), Expect = 3e-11
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 189 NMNNVKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWD 228
+ +KT +GH + ++FSP A+ SDDGT+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 50.4 bits (121), Expect = 2e-08
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 276 GQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFD 314
G+ L TL H V +A++ +G +L + S D +K++D
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 48.8 bits (117), Expect = 8e-08
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 236 KVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWD 272
K L+GH V V + P + SGS D +KLWD
Sbjct: 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGT--IKLWD 40
Score = 42.3 bits (100), Expect = 1e-05
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 320 SEVQTFRGHKKEASAVAWHPQHEGLFSSGGADGSIMFWH 358
++T +GH ++VA+ P + +SG DG+I W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40
Score = 40.0 bits (94), Expect = 1e-04
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 370 QAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
+ H + ++A+ P G LA+GS+D K W
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 32.7 bits (75), Expect = 0.039
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 157 AHDCAVRHMVWSHNGLWMVTSDHQGYIKYW 186
H V + +S +G ++ + G IK W
Sbjct: 10 GHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 64.9 bits (158), Expect = 8e-11
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 198 GHKESIRGISFSPSD-SKFATCSDDGTVRVWDF------YRCTEEKV-LRGHGADVKCVD 249
G + I ++F+P D K T S+DGT+ W ++ V L+GH V V
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 250 WHPY-KSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDH 308
+HP +++ S D V +WD + G+A+ + H + L WN +G+ L T S+D
Sbjct: 133 FHPSAMNVLASAGAD--MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK 190
Query: 309 LLKVFDIRN 317
L + D R+
Sbjct: 191 KLNIIDPRD 199
Score = 56.8 bits (137), Expect = 3e-08
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 174 MVTSDHQGYIKYW--------QSNMNNVKTFQGHKESIRGISFSPSDSK-FATCSDDGTV 224
+ T+ G I W Q+ + + QGH + + +SF PS A+ D V
Sbjct: 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150
Query: 225 RVWDFYRCTEEKVLRGHGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHA 284
VWD R +V++ H + ++W+ SL+ + SKD + + + DP+ G ++++ A
Sbjct: 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK--LNIIDPRDGTIVSSVEA 208
Query: 285 HKSTVMDLA-WNQNGNWLVT----ASRDHLLKVFDIRNLSSEVQT 324
H S W + + ++T S+ + ++D R ++S T
Sbjct: 209 HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253
Score = 47.6 bits (113), Expect = 2e-05
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 286 KSTVMDLAWNQ-NGNWLVTASRDHLLKVFDI------RNLSSEVQTFRGHKKEASAVAWH 338
+ ++D+A+N + L TAS D + + I +N+S + +GH K+ V++H
Sbjct: 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFH 134
Query: 339 PQHEGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSND 394
P + +S GAD + W V K V I + H + I ++ W+ G +L T S D
Sbjct: 135 PSAMNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKD 189
Score = 36.8 bits (85), Expect = 0.044
Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 13/159 (8%)
Query: 183 IKYWQSNMNN-VKTFQGHKESIRGISFSPSDSKFATCSDDGTVRVWDFYRCTEEKVLRGH 241
+ W V+ + H + I + ++ S T S D + + D T + H
Sbjct: 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209
Query: 242 --GADVKCVDWHPYKSLIVS--GSKDNQQPVKLWDP-KAGQALATLHAHKSTVMDLA-WN 295
+C+ W K LI++ SK Q+ + LWD K +T+ +S+ + + ++
Sbjct: 210 ASAKSQRCL-WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFD 268
Query: 296 QNGNWLVTASR-DHLLKVFDIRN----LSSEVQTFRGHK 329
++ N L S+ + ++ F++ N S + HK
Sbjct: 269 EDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK 307
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 64.8 bits (158), Expect = 2e-10
Identities = 45/184 (24%), Positives = 53/184 (28%), Gaps = 19/184 (10%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P P G P P FP GPP PP + P G P P F P P+ +
Sbjct: 174 QPPQQVLPQGMP-PRQAAFPQQGPPEQPPGYPQPPQGH--PEQVQPQQFLPA---PSQAP 227
Query: 681 SGPPGMFP---PGGPPNFGPNGPMGPPSG-PSGPMGPPGGPNGPMGPPGGGPGPNFPPGS 736
+ PP P P PP G P P PP P P P N P
Sbjct: 228 AQPP--LPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPH 285
Query: 737 GGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDN 796
G G N P P P + GP F +
Sbjct: 286 PGLPQ-GQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQR------EALSQE 338
Query: 797 DDRR 800
+ +R
Sbjct: 339 EAKR 342
Score = 49.4 bits (118), Expect = 7e-06
Identities = 40/165 (24%), Positives = 44/165 (26%), Gaps = 16/165 (9%)
Query: 642 GGPPNFPPNFGPGPPGPNFPGGPGPPMFP--------PGGPGPNFSGSGPPGMFPPGGPP 693
G P P P P P M P + P G PP
Sbjct: 127 GTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPP 186
Query: 694 NFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNF-PPGSGGPGNFGPNGPRPNFS 752
GPP P G PP G + P P P+ P P P P P
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQ-LPQQPPPLQQ 245
Query: 753 GGPKGPNFGPKGPRGPGPN----FGPGPNNYGPPNNSGGP-PGPN 792
G + P P P P P PP N P PG
Sbjct: 246 PQFPGLSQQMP-PPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLP 289
Score = 43.6 bits (103), Expect = 5e-04
Identities = 34/131 (25%), Positives = 36/131 (27%), Gaps = 19/131 (14%)
Query: 618 GGYPPAMGGRPPGFPGPGGPM--------------FPPGGPPNFPPNFGPGPPGPNFPGG 663
PP P G P P PP P PP P PG +
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMP 256
Query: 664 PGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGP 723
P PP P P + PP P P P G P P P P P
Sbjct: 257 PPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGL-PQGQNAPLPPPQQPQLLPLVQQ----P 311
Query: 724 PGGGPGPNFPP 734
G GP F
Sbjct: 312 QGQQRGPQFRE 322
Score = 38.6 bits (90), Expect = 0.015
Identities = 30/200 (15%), Positives = 36/200 (18%), Gaps = 26/200 (13%)
Query: 609 QGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNF------------GPGPP 656
G P G + P + P
Sbjct: 73 AAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKP 132
Query: 657 GPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGG 716
P P P P S P P P M P
Sbjct: 133 EPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQA---PQLPQPPQQVLPQGMPPRQA 189
Query: 717 PNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKG---PRGPGPNFG 773
GPP PPG P + + P+ P P
Sbjct: 190 AFPQQGPPE------QPPGYPQPP--QGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPP 241
Query: 774 PGPNNYGPPNNSGGPPGPNM 793
P P + PP P
Sbjct: 242 PLQQPQFPGLSQQMPPPPPQ 261
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 63.3 bits (154), Expect = 4e-10
Identities = 42/248 (16%), Positives = 58/248 (23%), Gaps = 12/248 (4%)
Query: 622 PAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
PP P PG P P + P P PGP+ S
Sbjct: 61 ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAP----ASPAREGSPTPPGPS-SPD 115
Query: 682 GPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGN 741
PP PP PP P + P G GPP + P + S
Sbjct: 116 PPPPTPPPASPPP-SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL 174
Query: 742 FGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDNDDRRG 801
+ + P P P P P ++
Sbjct: 175 PLSSPEETARAPSSPPAEPPPSTPPAAAS---PRPPRRSSPISASASSPAPAPGRSAADD 231
Query: 802 GGGNYNDNSYDNEDGNDWQGGDDNGWGDGGGQNYQNNERYNNDRNNWEEPRRGRGGGKMR 861
G + +D+S G W ++ + + W P G
Sbjct: 232 AGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIW---EASGWNGPSSRPGPASSS 288
Query: 862 GGKRGRGR 869
R R
Sbjct: 289 SSPRERSP 296
Score = 50.2 bits (120), Expect = 6e-06
Identities = 51/303 (16%), Positives = 67/303 (22%), Gaps = 45/303 (14%)
Query: 549 DLNPDAIFVHGKVIKVQKGSELAQVIMRGQKELTRYINSGRIPELEDTVSYIDGEEEWTP 608
D D + + ELA V + P E TP
Sbjct: 30 DAADDLLSGSQGQLVSDSA-ELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTP 88
Query: 609 QGSGDVDLRGGYPPAMGGRPPGFPGPGGP--MFPPGGPPNFPPNFGPG------PPGPNF 660
S PPG P P PP PP P+ P P G
Sbjct: 89 TWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPP---PSPAPDLSEMLRPVGSPG 145
Query: 661 PGGPGPPMFPPGGPGPNFSGSGPPGMF-------------PPGGPPNFGPNGPMGPPSGP 707
P P P S + P P P+ P S
Sbjct: 146 PPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPR 205
Query: 708 SGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGP------NGPRPNFSGGPKGPNFG 761
P + P G G+ + GP P
Sbjct: 206 PPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITL 265
Query: 762 PKGPR------GPGPNFGPGPNNYGP--------PNNSGGPPGPNMRDNDDRRGGGGNYN 807
P GP GP ++ P P++ G P P+ +
Sbjct: 266 PTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS 325
Query: 808 DNS 810
+S
Sbjct: 326 SSS 328
Score = 49.4 bits (118), Expect = 9e-06
Identities = 36/173 (20%), Positives = 38/173 (21%), Gaps = 6/173 (3%)
Query: 622 PAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
PA P P G P PG GP
Sbjct: 765 PAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSH 824
Query: 682 GPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGN 741
P G GP P G P P G G G P
Sbjct: 825 TPDGGSESSGPA--RPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRAR 882
Query: 742 FGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGG---PPGP 791
G P + P P+ P GP P GP G PPG
Sbjct: 883 PGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPG-GPDPRGGFRRVPPGD 934
Score = 39.4 bits (92), Expect = 0.009
Identities = 36/204 (17%), Positives = 41/204 (20%), Gaps = 9/204 (4%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P P P N P+ PGP + P P PG +
Sbjct: 251 PENECPLPRPAPITLPTRIWEASGWN-GPSSRPGPASSSSSPRERSPSPSPSSPGSGPAP 309
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPG 740
S P + G PG P P P P
Sbjct: 310 SSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRP 369
Query: 741 NFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDNDDRR 800
P S G P R G G P P+ D
Sbjct: 370 RPSRAPSSPAASAGR------PTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAAS 423
Query: 801 GGGGNYNDNSYDNEDGNDWQGGDD 824
G Y G W G
Sbjct: 424 GAF--YARYPLLTPSGEPWPGSPP 445
Score = 38.6 bits (90), Expect = 0.016
Identities = 31/165 (18%), Positives = 33/165 (20%), Gaps = 11/165 (6%)
Query: 635 GGPMFPPGGPPNFPPNFGP--GPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGP 692
GG FP G G G P PP GP
Sbjct: 17 GGEFFPRPPATPGDAADDLLSGSQG-QLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGP 75
Query: 693 PNFGPNGPMGPPSGPS------GPMGPPGGPNGPMGPPGGGPGPNFPPGSGGP--GNFGP 744
P S G P P P P PP S P
Sbjct: 76 GTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLS 135
Query: 745 NGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPP 789
RP S GP P P ++ P
Sbjct: 136 EMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPE 180
Score = 36.3 bits (84), Expect = 0.077
Identities = 29/137 (21%), Positives = 31/137 (22%), Gaps = 10/137 (7%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPN-------FPPNFGPGPPGPNFPGGPGPPMFPPGG 673
R PG GP P+ G GP P G P
Sbjct: 791 RAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARS 850
Query: 674 PGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFP 733
+ S G G P P P G PP P P P
Sbjct: 851 SESSKSKPAAAGGRARGKNGRRRPRPP--EPRARPGAAAPPKAAAAAPPAGAPAPRPR-P 907
Query: 734 PGSGGPGNFGPNGPRPN 750
G P GP P
Sbjct: 908 APRVKLGPMPPGGPDPR 924
Score = 34.0 bits (78), Expect = 0.40
Identities = 31/162 (19%), Positives = 35/162 (21%), Gaps = 20/162 (12%)
Query: 653 PGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMG 712
P P G PP+ + PG GP + S
Sbjct: 775 LEPAEPQRGAGSSPPVRAE-------AAFRRPGRLRRSGPAADAASRTASKRKSRSHTPD 827
Query: 713 PPGGPNGPMGPPG-GGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPN 771
+GP PPG P P S P G P PR
Sbjct: 828 GGSESSGPARPPGAAARPP--PARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGA 885
Query: 772 FGPGPNNYGPPNNSGGPPGPNMR----------DNDDRRGGG 803
P P P P D RGG
Sbjct: 886 AAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGF 927
Score = 33.6 bits (77), Expect = 0.53
Identities = 25/118 (21%), Positives = 26/118 (22%), Gaps = 13/118 (11%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPN 677
G P P G P G
Sbjct: 829 GSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAP 888
Query: 678 FSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPG 735
+ P G P P P GPM PPGGP P GG PPG
Sbjct: 889 PKAAAAAP--PAGAP----APRPRPAPRVKLGPM-PPGGP-----DPRGG-FRRVPPG 933
Score = 32.5 bits (74), Expect = 1.2
Identities = 24/126 (19%), Positives = 29/126 (23%), Gaps = 13/126 (10%)
Query: 632 PGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGG 691
G PG P+ P P P P P + + S
Sbjct: 334 ESSRGAAVSPGPSPSRSP--SPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
Query: 692 PPNFGPNGPMG---------PPSGPSGPMGPPGGP--NGPMGPPGGGPGPNFPPGSGGPG 740
G P P G P+ P G P P PP G
Sbjct: 392 AAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPPPPGRV 451
Query: 741 NFGPNG 746
+G G
Sbjct: 452 RYGGLG 457
Score = 30.9 bits (70), Expect = 3.6
Identities = 25/96 (26%), Positives = 25/96 (26%), Gaps = 16/96 (16%)
Query: 617 RGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGP 676
P A GGR G G P P G P P P
Sbjct: 854 SKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRV-- 911
Query: 677 NFSGSGPPGMFPPGGPPNFGPNG-----PMGPPSGP 707
GP PPGGP P G P G P
Sbjct: 912 ---KLGP---MPPGGPD---PRGGFRRVPPGDLHTP 938
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 59.6 bits (145), Expect = 6e-09
Identities = 31/181 (17%), Positives = 40/181 (22%), Gaps = 11/181 (6%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P G P P P P P P G P P P +
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFP------- 733
+ G +G + P PP P G P P
Sbjct: 650 PEHHPKHVAVPDASDGG-DGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708
Query: 734 ---PGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPG 790
+ P P + + P + P P P G PP + P
Sbjct: 709 PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAA 768
Query: 791 P 791
Sbjct: 769 A 769
Score = 53.5 bits (129), Expect = 4e-07
Identities = 29/175 (16%), Positives = 37/175 (21%), Gaps = 17/175 (9%)
Query: 632 PGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGG 691
PG G PP + PP P P P P P P G + PG
Sbjct: 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAP-APAGAAAA---PAEASAAPAPGV 647
Query: 692 PPNFGPNG--PMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFG----PN 745
+ S G P PP +G
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707
Query: 746 GPRPNFSGGPKGPNFGPKGPRGPGPNFG-------PGPNNYGPPNNSGGPPGPNM 793
P + P P P++ P + P P
Sbjct: 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPP 762
Score = 49.6 bits (119), Expect = 7e-06
Identities = 26/166 (15%), Positives = 33/166 (19%), Gaps = 9/166 (5%)
Query: 601 DGEEEWTPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNF 660
+ P P + + P G
Sbjct: 619 AAPAAPAAPAPAGAA-AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAA 677
Query: 661 PGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGG---- 716
P P P P P + P P PP + P P + P
Sbjct: 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737
Query: 717 ----PNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGP 758
P P PP P PP P P S +
Sbjct: 738 PVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783
Score = 48.8 bits (117), Expect = 1e-05
Identities = 29/178 (16%), Positives = 34/178 (19%), Gaps = 9/178 (5%)
Query: 632 PGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGG 691
GP GPP P P P P P P P
Sbjct: 588 VGPAPGAAGGEGPP--APASSGPPEEAARPAAPAA----PAAPAAPAPAGAAAA--PAEA 639
Query: 692 PPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNF 751
P + GG P PP + P
Sbjct: 640 SAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPA 699
Query: 752 SGGPKGPNFGPKGPR-GPGPNFGPGPNNYGPPNNSGGPPGPNMRDNDDRRGGGGNYND 808
P P G P P+ + P P + DD G
Sbjct: 700 QPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757
Score = 46.1 bits (110), Expect = 7e-05
Identities = 25/122 (20%), Positives = 26/122 (21%), Gaps = 13/122 (10%)
Query: 619 GYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNF 678
A G P P P P P P P P P P
Sbjct: 384 RLGVAGGAGAPAAAAPSA----AAAAP--AAAPAPAAAAPAAAAAPAPAAAPQPAPAP-- 435
Query: 679 SGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGG 738
P PP N G PP + P P P P P P
Sbjct: 436 -APAPA---PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP-EPTAAPAPAPPAAPAP 490
Query: 739 PG 740
Sbjct: 491 AA 492
Score = 43.1 bits (102), Expect = 7e-04
Identities = 19/110 (17%), Positives = 19/110 (17%), Gaps = 1/110 (0%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGP-PGPNFPGGPGPPMFPPGGPGPNFS 679
P P P P P P P P P G
Sbjct: 397 AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456
Query: 680 GSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPG 729
P P P P P P P P P
Sbjct: 457 PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 40.4 bits (95), Expect = 0.005
Identities = 20/126 (15%), Positives = 24/126 (19%)
Query: 652 GPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPM 711
G G P P + + P P P P+ P
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443
Query: 712 GPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPN 771
P G P P+ P P P P P P
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503
Query: 772 FGPGPN 777
G
Sbjct: 504 AGADDA 509
Score = 36.5 bits (85), Expect = 0.069
Identities = 26/108 (24%), Positives = 27/108 (25%), Gaps = 3/108 (2%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPP---GPNFPGGPGPPMFPPGGPGPN 677
P A G P P P PP G + P P P P PP P
Sbjct: 690 PAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749
Query: 678 FSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPG 725
P PP P PPS PS M
Sbjct: 750 DPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797
Score = 36.1 bits (84), Expect = 0.082
Identities = 21/134 (15%), Positives = 28/134 (20%), Gaps = 7/134 (5%)
Query: 670 PPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPG 729
G + + P P P+ + P P P P
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAA---APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPP 442
Query: 730 PNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYG---PPNNSG 786
G P P+ P P P+ P P P P
Sbjct: 443 SPAGNAPAGGAPSPPPAAAPSAQPAP-APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501
Query: 787 GPPGPNMRDNDDRR 800
P G + R
Sbjct: 502 APAGADDAATLRER 515
Score = 32.3 bits (74), Expect = 1.2
Identities = 18/131 (13%), Positives = 23/131 (17%), Gaps = 5/131 (3%)
Query: 675 GPNFSGSGPPGMFPP----GGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGP 730
+G P P P+ + P P P P
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443
Query: 731 NFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPR-GPGPNFGPGPNNYGPPNNSGGPP 789
G P P+ P P P P P + P
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503
Query: 790 GPNMRDNDDRR 800
R
Sbjct: 504 AGADDAATLRE 514
Score = 30.3 bits (69), Expect = 5.9
Identities = 19/116 (16%), Positives = 23/116 (19%), Gaps = 12/116 (10%)
Query: 607 TPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGP 666
P G P P + P PP P+ P P
Sbjct: 694 AGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAG 753
Query: 667 PMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMG 722
P P P + + P P P PPS
Sbjct: 754 A---PAQPPPPPAPAPAA---APAAAP------PPSPPSEEEEMAEDDAPSMDDED 797
>gnl|CDD|227938 COG5651, COG5651, PPE-repeat proteins [Cell motility and
secretion].
Length = 490
Score = 58.4 bits (141), Expect = 1e-08
Identities = 33/191 (17%), Positives = 36/191 (18%), Gaps = 21/191 (10%)
Query: 606 WTPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPG 665
+ + G G G N G G G
Sbjct: 280 NIGATNIGLAAAGTGNIGSGNAVDSGGSALV--GAIGQTSQATANAGSVNATGGAAAGSG 337
Query: 666 PPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPG 725
G G GG +G G PGG G G
Sbjct: 338 NLGVANSGSAAAPFGIAGANQAALGGAN---------SGAGNFGLGNNPGGGLGGKPLGG 388
Query: 726 GGPGPNFPPGSGGPGNFGPN-GPRPNFSGGPKGPNFG--PKGPRGPGPNFGPGPNNYGPP 782
G G G G G G N G G G G N G
Sbjct: 389 TGNG-----GIGASGIGNTGYGNSG--IANAGLSNAGSNNAGGENAGNANNTGGGNVGLW 441
Query: 783 NNSGGPPGPNM 793
N G
Sbjct: 442 NAGDFNAGAAG 452
Score = 45.7 bits (108), Expect = 9e-05
Identities = 33/167 (19%), Positives = 36/167 (21%), Gaps = 12/167 (7%)
Query: 625 GGRPPGFPGPGGPMF---PPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
GG G G G G G P GG G G
Sbjct: 330 GGAAAGSGNLGVANSGSAAAPFGIAGANQAALGGANS-GAGNFGLGNNPGGGLGGKPLGG 388
Query: 682 GPPGMFPPGGPPNFG-PNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPG 740
G G N G N + + GG N G G N + G
Sbjct: 389 TGNGGIGASGIGNTGYGNSGIANAGLSNAGSNNAGGEN--AGNANNTGGGNVGLWNAGDF 446
Query: 741 NFGPNGPRPNFSG-GPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSG 786
N G G N G G N N G
Sbjct: 447 NAGAAG----TGFTNNGSYNTGFLNFGNDNTGIFNGGNTSNGTFNQG 489
Score = 44.9 bits (106), Expect = 1e-04
Identities = 41/209 (19%), Positives = 47/209 (22%), Gaps = 12/209 (5%)
Query: 622 PAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
+G PG PG G G G
Sbjct: 246 GNLGSGNPGAPGLASQFSATNLGTLLGSLNPYLGNIGATNIGLAAAGTGNIGSGNAVDSG 305
Query: 682 GPPGMFPPGGPPNFGPN-GPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSG--- 737
G + G N G + G + G G N G G
Sbjct: 306 GSALVGAIGQTSQATANAGSVNATGGAAAGSGNLGVANSGSAAAPFGIAGANQAALGGAN 365
Query: 738 -GPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDN 796
G GNFG GG G G G G N G N N
Sbjct: 366 SGAGNFGLGNNPGGGLGGKPLGGTGNGGI-GASGIGNTGYGNSG----IANAGLSNAGSN 420
Query: 797 DDRRGGGGNYNDNSYDNEDGNDWQGGDDN 825
+ GN N+ N W GD N
Sbjct: 421 NAGGENAGNANNTGGGNVG--LWNAGDFN 447
Score = 42.6 bits (100), Expect = 0.001
Identities = 30/164 (18%), Positives = 35/164 (21%), Gaps = 7/164 (4%)
Query: 646 NFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPS 705
N G G PG G G G G N +G +
Sbjct: 243 VGFGNLGSGNPGAPGLASQFSATNLGTLLGSLNPYLGNIGATNIGLAAAGTGN--IGSGN 300
Query: 706 GPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGP 765
G G G +GG N N
Sbjct: 301 AVDSGGSALVGAIGQTSQATANAGSV--NATGGAAAGSGNLGVANSGSAAAPFGIAGANQ 358
Query: 766 RGPGPNFGPGPNNYGPPNNSGG--PPGPNMRDNDDRRGGGGNYN 807
G G N+G NN GG P + G G N
Sbjct: 359 AALG-GANSGAGNFGLGNNPGGGLGGKPLGGTGNGGIGASGIGN 401
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 58.2 bits (140), Expect = 1e-08
Identities = 43/169 (25%), Positives = 49/169 (28%), Gaps = 18/169 (10%)
Query: 637 PMFPPGGP-PNFPPNFGPGPPGPNFPGGPGPPMFP-PGGPGPNFSGSGPPG-MFPPGG-- 691
P P+ PP P P + P P P G PG M PP
Sbjct: 642 TFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAP 701
Query: 692 ---PPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGP---- 744
P P G P+ +G PP G PP PG PP + PG P
Sbjct: 702 TPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPP-AAAPGRARPPAAA 760
Query: 745 NGPRPNFSGGPKGPNFGPKGPRGPGPNFGP--GPNNYGPPNNSGGPPGP 791
G + P P P P P P P PP P
Sbjct: 761 PGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQ---AGPTS 806
Score = 52.4 bits (125), Expect = 1e-06
Identities = 42/177 (23%), Positives = 47/177 (26%), Gaps = 13/177 (7%)
Query: 588 GRIPELEDTVSYIDGEEEWTPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNF 647
P V + WT G M P + PG PP P
Sbjct: 648 FPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTM--LPIQW-APGTMQPPPRAPTPM 704
Query: 648 PPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPG-MFPPGGPPNF-----GPNGPM 701
P P G P PG + PG PP P G
Sbjct: 705 RPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRA 764
Query: 702 GPPSGPSG---PMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGP 755
PP+ G P PP P P P G P P PP GP + GP
Sbjct: 765 RPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPP-QAGPTSMQLMPRAAPGQQGP 820
Score = 50.8 bits (121), Expect = 3e-06
Identities = 41/170 (24%), Positives = 43/170 (25%), Gaps = 17/170 (10%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
PP RP G P P P P PG P PG
Sbjct: 710 PPGRAQRPAAATGRARP--PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPP 767
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPG 740
+ PG P PP P P P G P PP M P PG GP
Sbjct: 768 AAAPGAPTPQPPPQAPP-APQQRPRGAPTPQPPPQAGPTSM-----QLMPRAAPGQQGPT 821
Query: 741 NF--------GPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPP 782
G RP+ GP P P G P
Sbjct: 822 KQILRQLLTGGVKRGRPSLKKPAALERQAAAGPT-PSPGSGTSDKIVQAP 870
Score = 33.5 bits (76), Expect = 0.62
Identities = 29/137 (21%), Positives = 37/137 (27%), Gaps = 3/137 (2%)
Query: 658 PNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGP 717
P++ P P P P P + S P P P PM P P
Sbjct: 590 PSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFP 649
Query: 718 NGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPN 777
P PP P P + P P P + + P + P P
Sbjct: 650 T-PHQPPQVEITPYKPTWTQIG--HIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRP 706
Query: 778 NYGPPNNSGGPPGPNMR 794
PP + P R
Sbjct: 707 PAAPPGRAQRPAAATGR 723
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 56.8 bits (138), Expect = 3e-08
Identities = 26/225 (11%), Positives = 40/225 (17%), Gaps = 9/225 (4%)
Query: 652 GPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPM 711
G P P + P P +
Sbjct: 61 GGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAAS 120
Query: 712 GPPGGPNGPM---GPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGP 768
P G G + + +G R
Sbjct: 121 APEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRED 180
Query: 769 GPNFGPGPNNYGPPNNSGGPPGPNMRDNDDRRGGGGNYNDNSYDNEDGNDWQGGDDNGWG 828
+ R G+ + + G+
Sbjct: 181 RQAEAERGER----GRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRD-- 234
Query: 829 DGGGQNYQNNERYNNDRNNWEEPRRGRGGGKMRGGKRGRGRGGRG 873
+ N E + + E R GR G + R R RGG G
Sbjct: 235 RRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDG 279
Score = 49.5 bits (119), Expect = 6e-06
Identities = 28/221 (12%), Positives = 40/221 (18%), Gaps = 8/221 (3%)
Query: 662 GGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPM 721
GG P P +
Sbjct: 61 GGAAAAAATPAAPAAAARRAARAAAAARQAEQP-AAEAAAAKAEAAPAARAAAAAAAEAA 119
Query: 722 GPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGP 781
P G G P R
Sbjct: 120 SAPEAAQARE-RRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDR 178
Query: 782 PNNSGGPPGPNMRDNDDR-RGGGGNYNDNSYDNEDGNDWQGGDDNGWGDGGGQNYQNNER 840
+ ++R R G + + D + +G D G G + +
Sbjct: 179 EDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDA 238
Query: 841 YNNDRNNWEEPRRGRGGGKMRGGKRGRGR-----GGRGKRG 876
+D R G G G + R R G RG G
Sbjct: 239 RGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDG 279
Score = 44.1 bits (105), Expect = 3e-04
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 794 RDNDDRRGGGGNYNDNSYDNEDGNDWQGGDDNGWGDGGGQNYQNNERYNNDRNNWEEPRR 853
RD DRRG + +D + +G D G+G G R + R RR
Sbjct: 221 RDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRG-----RR 275
Query: 854 GRGGGKMR 861
G GG R
Sbjct: 276 GGDGGNER 283
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 56.1 bits (135), Expect = 9e-08
Identities = 52/202 (25%), Positives = 58/202 (28%), Gaps = 30/202 (14%)
Query: 620 YPPAMGGRP-PGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFP----------------- 661
+P A G P PG GP P PP P P G
Sbjct: 2488 FPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDD 2547
Query: 662 -GGPGPPMFPPGGPGPNFSGSGPPGMFPPGGP-PNFG-----PNGPMGP--PSGPSGPMG 712
G P PP+ PP P S PP P P P+ P P P G
Sbjct: 2548 AGDPPPPL-PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRG 2606
Query: 713 PPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNF 772
P GP P P P+ PP S P P+ P P+ P P R P
Sbjct: 2607 DPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRR 2666
Query: 773 GPGPNNYGPPNNSGGPPGPNMR 794
S P P R
Sbjct: 2667 ARRLGR--AAQASSPPQRPRRR 2686
Score = 55.3 bits (133), Expect = 1e-07
Identities = 45/191 (23%), Positives = 55/191 (28%), Gaps = 23/191 (12%)
Query: 622 PAMGGRPPGFPGPGGPMF------PPGGPPNFPPNFG----PGPPGPNFPGGPGPPMFPP 671
P R G + PP P P+ P PPGP P P
Sbjct: 2679 PPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA--LP 2736
Query: 672 GGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGP--- 728
P P +GP P G P GPP+ P+ P P GP + P
Sbjct: 2737 AAPAPPAVPAGP--ATPGGPARPARPPTTAGPPA-PAPPAAPAAGPPRRLTRPAVASLSE 2793
Query: 729 ----GPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGP-NNYGPPN 783
P+ + P + P GP P + P PGP P
Sbjct: 2794 SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853
Query: 784 NSGGPPGPNMR 794
S P G R
Sbjct: 2854 GSVAPGGDVRR 2864
Score = 52.2 bits (125), Expect = 1e-06
Identities = 50/185 (27%), Positives = 60/185 (32%), Gaps = 13/185 (7%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGP--GPPMFPPGGPG 675
PA+ P P GP P G P GPP P P P GPP
Sbjct: 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
Query: 676 PNFSGSGPPGMFPPGGPPN----FGPNGPMGPPSGPSGPMGPPGG--PNGPMGPPGGGPG 729
+ S S P P + P + P+GP+ PP P P PPG P
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848
Query: 730 PNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGP--RGPGPNFGPGPNNYG-PPNNSG 786
GS PG G RP P + P R P ++ PP+
Sbjct: 2849 SLPLGGSVAPG--GDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906
Query: 787 GPPGP 791
PP P
Sbjct: 2907 RPPQP 2911
Score = 51.5 bits (123), Expect = 2e-06
Identities = 46/191 (24%), Positives = 53/191 (27%), Gaps = 28/191 (14%)
Query: 634 PGGPMF--PPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPG-MFPP- 689
PG P++ P F P P G P PP P P P G P
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPP--APSRLAPAILPDEPVGEPVHPR 2532
Query: 690 ----------------GGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPG--PN 731
G PP P P PP+ P + PP P P P+
Sbjct: 2533 MLTWIRGLEELASDDAGDPPP--PLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPD 2590
Query: 732 FPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGP 791
PP S P P R + G P P P P P + P
Sbjct: 2591 APPQSARPR--APVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
Query: 792 NMRDNDDRRGG 802
R DD G
Sbjct: 2649 PERPRDDPAPG 2659
Score = 51.1 bits (122), Expect = 3e-06
Identities = 42/198 (21%), Positives = 46/198 (23%), Gaps = 36/198 (18%)
Query: 617 RGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPG- 675
R P G P G P PP PP P P P P + PP P
Sbjct: 2597 RPRAPVDDRGDPRGPAPPSPL--PPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRD 2654
Query: 676 ------------------PNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGP 717
+ S P P G + P P P
Sbjct: 2655 DPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPA--- 2711
Query: 718 NGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGP--- 774
P PP GP P + P GP P GP P
Sbjct: 2712 -----PHALVSATPLPP---GPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT 2763
Query: 775 -GPNNYGPPNNSGGPPGP 791
GP PP P
Sbjct: 2764 AGPPAPAPPAAPAAGPPR 2781
Score = 50.7 bits (121), Expect = 4e-06
Identities = 46/180 (25%), Positives = 56/180 (31%), Gaps = 13/180 (7%)
Query: 621 PPAMGGRPPGFPGPGG-----PMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPG 675
P A+ P PGP P P P P P GP P P PP
Sbjct: 2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP 2771
Query: 676 PNFSGSGPPGMFPPGGPPNFGPNGPMGP-PSGPSGPMGPPGGPNGPMGPPGGGPGPNFPP 734
P +GPP + + P P P+ P P PP P PP
Sbjct: 2772 PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA-AALPPAASPAGPLPP 2830
Query: 735 GSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMR 794
P + P P P GP P+ G PG + P + P P P +R
Sbjct: 2831 ----PTSAQPTAPPP--PPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVR 2884
Score = 49.9 bits (119), Expect = 7e-06
Identities = 50/190 (26%), Positives = 56/190 (29%), Gaps = 21/190 (11%)
Query: 622 PAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNF---------PGGPGPPMFPPG 672
PA PP P P PPG PP P G PG + P P PP
Sbjct: 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPV 2883
Query: 673 G--PGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGP 730
P S S PP P P P PP P PP P PP P P
Sbjct: 2884 RRLARPAVSRSTESFALPPDQPER--PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQP 2941
Query: 731 NFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPG 790
P + G P+G P G P R P F P +
Sbjct: 2942 PLAPTTDPAGAGEPSGAVPQPWLGALVPG------RVAVPRFRVPQP--APSREAPASST 2993
Query: 791 PNMRDNDDRR 800
P + + R
Sbjct: 2994 PPLTGHSLSR 3003
Score = 46.5 bits (110), Expect = 8e-05
Identities = 46/192 (23%), Positives = 48/192 (25%), Gaps = 21/192 (10%)
Query: 617 RGGYPPAMGGRPPG---------FPGPGGPMFPP----GGPPNFPPNFGPGPPGP----N 659
PP RP P P P PP PP P P P
Sbjct: 2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
Query: 660 FPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNG 719
P P PP PP P P G P P P P + P
Sbjct: 2835 QPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRS 2894
Query: 720 PMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNY 779
P PP P P P P P P P P P P +
Sbjct: 2895 TESFALPPDQPERPPQPQAPPPPQPQPQPPP----PPQPQPPPPPPPRPQPPLAPTTDPA 2950
Query: 780 GPPNNSGGPPGP 791
G SG P P
Sbjct: 2951 GAGEPSGAVPQP 2962
Score = 43.8 bits (103), Expect = 5e-04
Identities = 43/182 (23%), Positives = 49/182 (26%), Gaps = 41/182 (22%)
Query: 625 GGRPPGFPGPGGPMFPPGGPPNF--PPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSG 682
G PP P P PP P PP P P P P PP P
Sbjct: 2549 GDPPPPLP----PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPR----- 2599
Query: 683 PPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNF 742
P P GP P P P P+ P PP P N P P
Sbjct: 2600 -----APVDDRG-DPRGP--APPSPLPPDTHA--PDPP--PPSPSPAANEPDPHPPPTVP 2647
Query: 743 GPNGPRPNFSGG-------------PKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPP 789
P PR + + G + P+ PR G + PP
Sbjct: 2648 PPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRA-----ARPTVGSLTSLADPP 2702
Query: 790 GP 791
P
Sbjct: 2703 PP 2704
Score = 38.4 bits (89), Expect = 0.021
Identities = 30/136 (22%), Positives = 34/136 (25%), Gaps = 17/136 (12%)
Query: 606 WTPQGSGDVDLRGGYPPAMGGRPP-----GFPGPGGPMFPPGGPPNFPPNFGPGP---PG 657
WTP S + DL G P P G + P P P
Sbjct: 359 WTPPSSLE-DLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPT 417
Query: 658 PNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPG-- 715
P P PP P P+ G P PP P P P+
Sbjct: 418 PAPTPVPASAPPPPATPLPSAEPGSDDG---PAPPPERQPPAPATEPAPDDPDDATRKAL 474
Query: 716 ---GPNGPMGPPGGGP 728
P PPG
Sbjct: 475 DALRERRPPEPPGADL 490
Score = 36.8 bits (85), Expect = 0.072
Identities = 42/206 (20%), Positives = 48/206 (23%), Gaps = 49/206 (23%)
Query: 632 PGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGG 691
P P + GPP P P PP G P + P
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPD 314
Query: 692 PPNFGPNGPMGPPSGPSGPMG------PPGGPNG--PMG----------PP--------G 725
PP P P G G P P P+G PP G
Sbjct: 315 PP---PPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAG 371
Query: 726 GGPGPNFPP-----------------GSGGPGNFGPNGPRPNFS---GGPKGPNFGPKGP 765
G GG P P P P P P
Sbjct: 372 RHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPP 431
Query: 766 RGPGPNFGPGPNNYGPPNNSGGPPGP 791
P P+ PG ++ P PP P
Sbjct: 432 ATPLPSAEPGSDDGPAPPPERQPPAP 457
Score = 33.8 bits (77), Expect = 0.57
Identities = 28/97 (28%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
PP RPP P P P PP PP P PP P P P P P SG
Sbjct: 2901 PPDQPERPPQPQAPPPPQPQPQPPP--PPQPQPPPPPPPRPQPPLAPTTDP-AGAGEPSG 2957
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGP 717
+ P P P PS P
Sbjct: 2958 AVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994
Score = 31.1 bits (70), Expect = 4.0
Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 13/80 (16%)
Query: 661 PGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGP 720
PGG P P P P + P PP+ P P PG +GP
Sbjct: 399 PGGDDQTRPAAPVPAS------VPTPAPTPVPASAPP-----PPATPL-PSAEPGSDDGP 446
Query: 721 MGPPGGGP-GPNFPPGSGGP 739
PP P P P P
Sbjct: 447 APPPERQPPAPATEPAPDDP 466
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 54.3 bits (131), Expect = 1e-07
Identities = 36/151 (23%), Positives = 46/151 (30%), Gaps = 13/151 (8%)
Query: 574 IMRGQKELTRYINSGRIPELEDTVSYIDGEEEWTPQGSGDVDLRGGYPPAMGGRPPGFPG 633
I + KE + E ++ D + T + A PP
Sbjct: 138 IHKALKEGEDPNPGPPLDEEDE-----DADVATTNSDNSFPGEDADPASASPSDPPSSS- 191
Query: 634 PGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMF-PPGGP 692
PG P FP P+ PP P+ PP P P S PPG PP P
Sbjct: 192 PGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNP----SPPPGPAAPPPPP 247
Query: 693 PNFGPNGPMGPPSGPSGPMGPPGGPNGPMGP 723
P P+ PS P P G +
Sbjct: 248 VQQVPPLSTAKPTPPSASATPA--PIGGITL 276
Score = 45.8 bits (109), Expect = 6e-05
Identities = 28/124 (22%), Positives = 31/124 (25%), Gaps = 9/124 (7%)
Query: 627 RPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPN-FSGSGPPG 685
P P P + PG P P P P+ S P
Sbjct: 163 VATTNSDNSFPGEDADPASA-----SPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPS 217
Query: 686 MFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPN 745
F PP PS P GP PP P + P P P S P G
Sbjct: 218 SFQSDTPPP--SPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK-PTPPSASATPAPIGGI 274
Query: 746 GPRP 749
Sbjct: 275 TLDD 278
Score = 43.1 bits (102), Expect = 4e-04
Identities = 24/125 (19%), Positives = 28/125 (22%), Gaps = 9/125 (7%)
Query: 626 GRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPG 685
G P PGP P P P P + G
Sbjct: 145 GEDPN-PGP-----PLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFP 198
Query: 686 MFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPN 745
P + P P S S P PP G P PP P +
Sbjct: 199 SPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVP---PLS 255
Query: 746 GPRPN 750
+P
Sbjct: 256 TAKPT 260
Score = 37.4 bits (87), Expect = 0.029
Identities = 32/157 (20%), Positives = 39/157 (24%), Gaps = 22/157 (14%)
Query: 642 GGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPM 701
G PN P + FP P + P PG P P
Sbjct: 145 GEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDP 204
Query: 702 GPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFG 761
PS S P P P P S P+ GP P
Sbjct: 205 SSPSDSSLP---------PAPSSFQSDTPPPSPES---------PTNPSPPPGPAAPPPP 246
Query: 762 PKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDNDD 798
P P P P P ++ P + +DD
Sbjct: 247 PVQQVPPLSTAKPTP----PSASATPAPIGGITLDDD 279
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 52.7 bits (126), Expect = 5e-07
Identities = 41/188 (21%), Positives = 49/188 (26%), Gaps = 18/188 (9%)
Query: 602 GEEEWTPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFP 661
G +P GS + G P G P P P P PP+ P GP P P
Sbjct: 101 GSPTPSPSGSAEELASGLSPENTSGSSPESPASHSP---PPSPPSHP---GPHEPAPPES 154
Query: 662 GGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPM 721
P P P P+ S P P P P S P P G
Sbjct: 155 HNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEP 214
Query: 722 GPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGP 781
P P+ N + P+ G R + P
Sbjct: 215 QSPTPQQAPS--------PNTQQAVEHEDEPTEPEREGPPFPGHRSHSYTVV----GWKP 262
Query: 782 PNNSGGPP 789
GG P
Sbjct: 263 STRPGGVP 270
Score = 32.2 bits (73), Expect = 1.3
Identities = 34/134 (25%), Positives = 43/134 (32%), Gaps = 11/134 (8%)
Query: 672 GGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPG--GPNGPMGPPGGGPG 729
G P P+ SGS G P P+ S P PP GP+ P P P
Sbjct: 101 GSPTPSPSGSAEEL--ASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPS 158
Query: 730 PNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPP 789
PN S + P P+ P P+ P PGP P + PP + P
Sbjct: 159 PN-QQPSSFLQPSHEDSPEE-----PEPPTSEPE-PDSPGPPQSETPTSSPPPQSPPDEP 211
Query: 790 GPNMRDNDDRRGGG 803
G +
Sbjct: 212 GEPQSPTPQQAPSP 225
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 50.4 bits (120), Expect = 1e-06
Identities = 45/141 (31%), Positives = 47/141 (33%), Gaps = 10/141 (7%)
Query: 634 PGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGP--PGMFPPGG 691
P G P P FGP P P G PM P G P F+ P PGM P
Sbjct: 144 PAGVNVANNPQPQVQPQFGPNPQQRINPQRFGFPMQPNMGMRPGFNQMPPHMPGMPPNQM 203
Query: 692 PPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPN-GPRPN 750
P F P M P G M PG P P G P GPN RP
Sbjct: 204 RPGFNPMPGMPPRPG----FNQNPNMMPNMNRPGFRPQPGGFNHPGTP--MGPNMQQRPG 257
Query: 751 FSGGP-KGPNFGPKGPRGPGP 770
F+ P GPR P
Sbjct: 258 FNPNQGMNPPPHMAGPRAGFP 278
Score = 43.5 bits (102), Expect = 2e-04
Identities = 43/139 (30%), Positives = 46/139 (33%), Gaps = 30/139 (21%)
Query: 655 PPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPP 714
P G N P P + P GP N P G P PN M P P P
Sbjct: 144 PAGVNVANNPQPQVQPQFGP--NPQQRINPQR--FGFPMQ--PNMGMRPGFNQMPPHMPG 197
Query: 715 GGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGP 774
PN PG P P PP RP F + PN P R P F P
Sbjct: 198 MPPN--QMRPGFNPMPGMPP-------------RPGF---NQNPNMMPNMNR---PGFRP 236
Query: 775 GPNNYGPPNNSGGPPGPNM 793
P + P P GPNM
Sbjct: 237 QPGGFNHPGT---PMGPNM 252
Score = 40.8 bits (95), Expect = 0.002
Identities = 41/121 (33%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 616 LRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPG-PPGPNFPGGPGPPMFPPGGP 674
R G+P +P PG PP P P PG P P P PG P P
Sbjct: 172 QRFGFPM----QPNMGMRPGFNQMPPHMPGMPPNQMRPGFNPMPGMPPRPGFNQNPNMMP 227
Query: 675 GPNFSGSGP-PGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFP 733
N G P PG F G P GPN P P+ M PP P GP FP
Sbjct: 228 NMNRPGFRPQPGGFNHPGTP-MGPNMQQRPGFNPNQGMNPP--------PHMAGPRAGFP 278
Query: 734 P 734
P
Sbjct: 279 P 279
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 50.5 bits (120), Expect = 4e-06
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 5/146 (3%)
Query: 213 SKFATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYK-SLIVSGSKDNQQPVKLW 271
S+ A+ + +G V+VWD R ++ H V +D+ +L+ SGS D VKLW
Sbjct: 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS--VKLW 603
Query: 272 DPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDHLLKVFDIRNLSSEVQTFRGHKKE 331
G ++ T+ + +++G L S DH + +D+RN + T GH K
Sbjct: 604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663
Query: 332 ASAVAWHPQHEGLFSSGGADGSIMFW 357
S V + S D ++ W
Sbjct: 664 VSYVRF--VDSSTLVSSSTDNTLKLW 687
Score = 38.9 bits (90), Expect = 0.013
Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 289 VMDLAWNQNGNWLVTASRDHLLKVF-------DIRNLSSEVQTFRGHKKEASAVAWHPQH 341
V + ++++G + TA + +K+F D R++ V K S + W+
Sbjct: 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSK-LSGICWNSYI 544
Query: 342 EGLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLG-HILATGSNDHASKFW 400
+ +S +G + W V + V + + H+ +W++ + +LA+GS+D + K W
Sbjct: 545 KSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLW 603
Query: 401 TRNR 404
+ N+
Sbjct: 604 SINQ 607
Score = 38.9 bits (90), Expect = 0.014
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 284 AHKSTVMDLAWNQNGNWLVTASR-DHLLKVFDIRNLSSEVQTFRGHKKEASAVAWHPQHE 342
A +S + + WN V +S + +++V+D+ S V + H+K ++ +
Sbjct: 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSADP 588
Query: 343 GLFSSGGADGSIMFWHVGADKEVGCIPQAHDNIIWTMAWHPLGHILATGSNDHASKFW 400
L +SG DGS+ W + +G I + NI G LA GS DH ++
Sbjct: 589 TLLASGSDDGSVKLWSINQGVSIGTI-KTKANICCVQFPSESGRSLAFGSADHKVYYY 645
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 49.4 bits (118), Expect = 8e-06
Identities = 37/199 (18%), Positives = 46/199 (23%), Gaps = 20/199 (10%)
Query: 614 VDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFP-PNFGPGPPGPNFPGGPGPPMFPPG 672
VD G P P P + P PPG P P P
Sbjct: 88 VDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGL--PRQDQLPTARPA 145
Query: 673 GPGPNFSGSGPPGMFPPG-----------GPPNFGPNGPMGPPSGPSGPMGPPGGPNGPM 721
P + PG +P G P P + P P
Sbjct: 146 YP--AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPE 203
Query: 722 GPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGG--PKGPNFGPKGPRGPGPNFGPGPNNY 779
+ P P + P P G +G P+ P P
Sbjct: 204 YDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGP 263
Query: 780 --GPPNNSGGPPGPNMRDN 796
P + GP P R N
Sbjct: 264 LAAQPAPAPGPGEPTARLN 282
Score = 36.3 bits (84), Expect = 0.066
Identities = 29/128 (22%), Positives = 36/128 (28%), Gaps = 16/128 (12%)
Query: 607 TPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMF--PPG-GPPNFPPNFGPG--------P 655
G R G+PP P P P G P +
Sbjct: 161 AADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDR 220
Query: 656 PGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPG 715
P + P PP PG + G GPP P+ P GP + P PG
Sbjct: 221 PRRDRTDRPEPP---PGAGHVHRGGPGPPER-DDAPVVPIRPSAP-GPLAAQPAPAPGPG 275
Query: 716 GPNGPMGP 723
P + P
Sbjct: 276 EPTARLNP 283
Score = 36.3 bits (84), Expect = 0.077
Identities = 37/189 (19%), Positives = 49/189 (25%), Gaps = 32/189 (16%)
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPG 740
+G P PP P P G GP PPG P
Sbjct: 92 AGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDR----PPGLPRQDQLPT------ 141
Query: 741 NFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDNDDRR 800
RP + P + + G P ++YG G P
Sbjct: 142 ------ARPAY------PAYQQRPEPGAWP---RAADDYGWQQQRLGFPPR-----APYA 181
Query: 801 GGGGNYNDNSYDNEDGNDWQGGDDNGWGDGGGQNYQNNERYNNDRNNWEEPRRGRGGGKM 860
+ D E + + D D + +R DR + EP G G
Sbjct: 182 SPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRP-DWDRPRRDRTDRPEPPPG-AGHVH 239
Query: 861 RGGKRGRGR 869
RGG R
Sbjct: 240 RGGPGPPER 248
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 49.2 bits (117), Expect = 9e-06
Identities = 37/170 (21%), Positives = 38/170 (22%), Gaps = 8/170 (4%)
Query: 629 PGFPGPGGPMFPP-GGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMF 687
G M P N GP GPG PM G S
Sbjct: 60 QQVLQGGQGMPDPINALQNLTGQGTRGPQMGPMGPGPGRPMGQQMGGPGTASNLLQSLNV 119
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPG---PNFPPGSGGPGNFGP 744
P GP G M P G G M G P PN G
Sbjct: 120 RGQMPMGAAGMGPH--QMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQA 177
Query: 745 NGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMR 794
G G G PG G G GG N +
Sbjct: 178 GGMNQGQQGPVGQQQPPQMG--QPGMPGGGGQGQMQQQGQPGGQQQQNPQ 225
Score = 44.2 bits (104), Expect = 3e-04
Identities = 48/268 (17%), Positives = 66/268 (24%), Gaps = 30/268 (11%)
Query: 551 NPDAIFVHGKVIKVQKGSELAQVIMRGQKELTRYINSGRIPELEDTVSYIDGEEEWTPQG 610
P + G +G Q GQ++ + + + + G + Q
Sbjct: 192 QPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQM 251
Query: 611 SGDVDLRGGYPP-AMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPP------GPNFPGG 663
+GG P M G P P P G PG
Sbjct: 252 GQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQS--QLGMLPNQMQQMPGGGQGGPGQ 309
Query: 664 PGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMG-------PPSGPSGPMGPPGG 716
P P G P + G+ G G P
Sbjct: 310 PMGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAH 369
Query: 717 PNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGP------------KGPNFGPKG 764
G G GN G G P G P + P+
Sbjct: 370 QQQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQP 429
Query: 765 PRGPGPNFGPGPNNYGPPNNSGGP-PGP 791
P+ P+ G GP + P + SGG P P
Sbjct: 430 PQPSVPSPG-GPGSQPPQSVSGGMIPSP 456
Score = 42.3 bits (99), Expect = 0.001
Identities = 34/132 (25%), Positives = 37/132 (28%), Gaps = 13/132 (9%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPN 677
G +P A + G GG M G N N G P G PG M P P
Sbjct: 363 GNHPAAHQQQMNQQVGQGGQMVALGYL-NIQGNQGGLGANPMQQGQPG--MMSSPSPVP- 418
Query: 678 FSGSGPPGMFPPGGPPNFGPNGP--MGPPSGPSGPMGPPGG------PNGPMGPPGGGPG 729
M P P P GP P S G + P P P
Sbjct: 419 -QVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPSPPALMPSPSPQMSQSPASQRTI 477
Query: 730 PNFPPGSGGPGN 741
GGP N
Sbjct: 478 QQDMVSPGGPLN 489
Score = 41.9 bits (98), Expect = 0.001
Identities = 33/174 (18%), Positives = 40/174 (22%), Gaps = 17/174 (9%)
Query: 628 PPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMF 687
P P GP P G GP + G +G GP M
Sbjct: 87 PQMGPMGPGPGRPMGQQMG----------GPGTASNLLQSLNVRGQMPMGAAGMGPHQM- 135
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGP 747
P G G S PN P G G
Sbjct: 136 --SRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMG--PQQGQAQGQAGGMNQGQQGPVGQQ 191
Query: 748 RPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDNDDRRG 801
+P G P P G +G PG P + D ++G
Sbjct: 192 QPPQMGQPGMPGGGGQGQMQQQ--GQPGGQQQQNPQMQQQLQNQQQQQMDQQQG 243
Score = 41.1 bits (96), Expect = 0.002
Identities = 36/162 (22%), Positives = 39/162 (24%), Gaps = 18/162 (11%)
Query: 607 TPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPM---FPPGGPPNFPPNFGPGPP------- 656
+ PP MG G G M PGG P
Sbjct: 179 GMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQM 238
Query: 657 ----GPNFPGGPGPPMFPP-GGPGPNFSGSGPPGMFPPGGPPNFGPNGP---MGPPSGPS 708
GP GG P G + PP P M P
Sbjct: 239 DQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQ 298
Query: 709 GPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPN 750
P G GGP PMGPP PG G G +
Sbjct: 299 MPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQQL 340
Score = 39.6 bits (92), Expect = 0.008
Identities = 36/189 (19%), Positives = 39/189 (20%), Gaps = 16/189 (8%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNF--PPNFGPGPPGPNFPGGPGPPMFPPGGPGPNF 678
P P G M PG N N P GP
Sbjct: 87 PQMGPMGPGPGRPMGQQMGGPGTASNLLQSLNVRGQMPMGAAGMGPHQMSRVGTMQPGGQ 146
Query: 679 SGSGPPGMFPPGGP-------PNFGPNGPM--GPPSGPSGPMG--PPGGPNGPMGPPGGG 727
+G P G G G GP+G P P P GGG
Sbjct: 147 AGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGG 206
Query: 728 ---PGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNN 784
PG N N GP + G P
Sbjct: 207 QGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQM 266
Query: 785 SGGPPGPNM 793
GG M
Sbjct: 267 QGGQMQVPM 275
Score = 38.8 bits (90), Expect = 0.014
Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 10/103 (9%)
Query: 622 PAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
M PG P+ + P P P P PG P GG P+
Sbjct: 401 NPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQS-VSGGMIPS---- 455
Query: 682 GPPGMFPPGGP-PNFGPNGPMGPPS---GPSGPMGPPGGPNGP 720
PP + P P + P P GP+ PG +
Sbjct: 456 -PPALMPSPSPQMSQSPASQRTIQQDMVSPGGPLNTPGQSSVN 497
Score = 36.1 bits (83), Expect = 0.097
Identities = 41/203 (20%), Positives = 44/203 (21%), Gaps = 24/203 (11%)
Query: 608 PQGSGDVDLRGGYPPAMGGRPP---GFPGPGGPMFP-PGGPPNFPPNFGPGPPGPNFPGG 663
P V GG G P P P G G
Sbjct: 132 PHQMSRV-GTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQ 190
Query: 664 PGPP-MFPPGGPGPNFSGSGPPGM-FPPGGPPNFGP----------NGPMGPPSGPSGP- 710
PP M PG PG G G PGG P M GP+
Sbjct: 191 QQPPQMGQPGMPG--GGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQ 248
Query: 711 --MGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGP 768
MG G M P G P P P + P G +G
Sbjct: 249 AQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQ--MQQMPGGGQGG 306
Query: 769 GPNFGPGPNNYGPPNNSGGPPGP 791
P GG
Sbjct: 307 PGQPMGPPPQRPGAVPQGGQAVQ 329
Score = 33.4 bits (76), Expect = 0.65
Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Query: 607 TPQGSGDVDLRGGYPPAMGGRPP-GFPGPGGPMFP-PGGPPNFPPNFGPGPPGPNFPGGP 664
P G + P + P P P P PGGP + PP G P+ P
Sbjct: 401 NPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPS-PPAL 459
Query: 665 GPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPS 708
P P P + M PGGP N + P+ P
Sbjct: 460 MPSPSPQMSQSPASQRTIQQDMVSPGGPLNTPGQSSVNSPANPQ 503
>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein
[RNA processing and modification].
Length = 654
Score = 48.2 bits (114), Expect = 2e-05
Identities = 39/125 (31%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 623 AMGGRPPGF-PGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
+MG PG P G M G P P+ P P F G M+ P P P F
Sbjct: 504 SMGNAVPGMNPAMGMNMGGMMGFPMGGPSASPNPMMNGFAAGS-MGMYMPFQPQPMFYHP 562
Query: 682 GPPGM-------FPPGG--PPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNF 732
P M GG P G M +GP PMG G P G G GP+
Sbjct: 563 SPQMMPVMGSNGAEEGGGNISPHVPAGFM--AAGPGAPMGAFGYPGGIPFQGMMGSGPSG 620
Query: 733 PPGSG 737
P +G
Sbjct: 621 MPANG 625
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 47.6 bits (113), Expect = 2e-05
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 193 VKTFQGHKESIRGISFSPSDSK-FATCSDDGTVRVWDFYRCTEEKV---------LRGHG 242
V +GH SI + F+P S+ A+ S+D T+RVW+ +E V L+GH
Sbjct: 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI-PHNDESVKEIKDPQCILKGHK 125
Query: 243 ADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNWLV 302
+ +DW+P I+ S + V +WD + + ++ K + L WN GN L
Sbjct: 126 KKISIIDWNPMNYYIMCSSGFDSF-VNIWDIENEKRAFQINMPKK-LSSLKWNIKGNLLS 183
Query: 303 TASRDHLLKVFDIR 316
+ + D R
Sbjct: 184 GTCVGKHMHIIDPR 197
Score = 42.2 bits (99), Expect = 0.001
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 282 LHAHKSTVMDLAWNQ-NGNWLVTASRDHLLKVFDIRNLSSEVQ-------TFRGHKKEAS 333
L H S+++DL +N L + S D ++V++I + V+ +GHKK+ S
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 334 AVAWHPQHEGLFSSGGADGSIMFWHVGADK 363
+ W+P + + S G D + W + +K
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159
>gnl|CDD|221868 pfam12938, M_domain, M domain of GW182.
Length = 238
Score = 45.6 bits (108), Expect = 4e-05
Identities = 27/107 (25%), Positives = 28/107 (26%), Gaps = 3/107 (2%)
Query: 643 GPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMG 702
F FG PP P G G PG G PN +
Sbjct: 3 SGMGFAGPFGGDRFPSGGSSVNSPPFSQNNLPNNLGGGGGGPGGGGGGNNPNLASLSSLT 62
Query: 703 PPSG---PSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNG 746
SG PP G G G G GP P N PN
Sbjct: 63 SQGLGKILSGLQPPPLGNGGGSGAGGPGPVGGGGGPGVAPNNIQPNA 109
Score = 39.1 bits (91), Expect = 0.005
Identities = 33/114 (28%), Positives = 36/114 (31%), Gaps = 9/114 (7%)
Query: 674 PGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFP 733
G F+G FP GG P P + GG G G GGG PN
Sbjct: 3 SGMGFAGPFGGDRFPSGGSSVNSP------PFSQNNLPNNLGGGGGGPGGGGGGNNPNLA 56
Query: 734 PGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGG 787
S G + P N G G GPGP G G PNN
Sbjct: 57 SLSSLT--SQGLGKILSGLQPPPLGNGGGSGAGGPGPV-GGGGGPGVAPNNIQP 107
Score = 39.1 bits (91), Expect = 0.005
Identities = 29/102 (28%), Positives = 31/102 (30%), Gaps = 6/102 (5%)
Query: 690 GGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRP 749
G GP G PSG S PP N GGG G G G G N
Sbjct: 3 SGMGFAGPFGGDRFPSGGSSVNSPPFSQNNLPNNLGGGGG------GPGGGGGGNNPNLA 56
Query: 750 NFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGP 791
+ S P P G + G P GG GP
Sbjct: 57 SLSSLTSQGLGKILSGLQPPPLGNGGGSGAGGPGPVGGGGGP 98
Score = 37.5 bits (87), Expect = 0.016
Identities = 30/108 (27%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGP-NFPGGPGPPM-----FPP 671
G P G R P G PP N P N G G GP GG P +
Sbjct: 6 GFAGPFGGDRFP--SGGSSVNSPPFSQNNLPNNLGGGGGGPGGGGGGNNPNLASLSSLTS 63
Query: 672 GGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNG 719
G G SG PP + GG GP G P
Sbjct: 64 QGLGKILSGLQPPPLGNGGGSGAGGPGPVGGGGGPGVAPNNIQPNAQA 111
Score = 36.0 bits (83), Expect = 0.062
Identities = 20/106 (18%), Positives = 23/106 (21%), Gaps = 10/106 (9%)
Query: 664 PGPPMFPPGGPGPNFSGSGP-PGM-FPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGP- 720
G P G SG F PN G GP G G +
Sbjct: 3 SGMGFAGPFGGDRFPSGGSSVNSPPFSQNNLPNNLGGGGGGPGGGGGGNNPNLASLSSLT 62
Query: 721 -------MGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPN 759
+ P N G G P + PN
Sbjct: 63 SQGLGKILSGLQPPPLGNGGGSGAGGPGPVGGGGGPGVAPNNIQPN 108
Score = 33.7 bits (77), Expect = 0.34
Identities = 18/77 (23%), Positives = 20/77 (25%), Gaps = 6/77 (7%)
Query: 722 GPPGGGPGPNFPPGSGGPGN----FGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFG--PG 775
G GP SGG F N N GG GP G G +
Sbjct: 4 GMGFAGPFGGDRFPSGGSSVNSPPFSQNNLPNNLGGGGGGPGGGGGGNNPNLASLSSLTS 63
Query: 776 PNNYGPPNNSGGPPGPN 792
+ PP N
Sbjct: 64 QGLGKILSGLQPPPLGN 80
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 44.7 bits (106), Expect = 8e-05
Identities = 41/169 (24%), Positives = 51/169 (30%), Gaps = 26/169 (15%)
Query: 674 PGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFP 733
P SG GMF GG P P P P P P G GP G
Sbjct: 74 PQSQSSGGFLSGMFG-GGAPRPPPAAPAVQPPAPPAR--PGWGSGGPSQQGAGQQPGYAQ 130
Query: 734 PGSGG-------------PGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYG 780
PG G G NG F G + G + ++ G
Sbjct: 131 PGPGSFLGGAAQTAAGVAGGMLLGNGLENLFGGHSQPAEIVDAIGEGGDGSGPAPADDTG 190
Query: 781 PPNNSGGPPGPNMRDNDDRRGGGGNYNDNSYDNEDGNDWQGGDDNGWGD 829
N+ G +DD GG+ N D++ G G DD+ D
Sbjct: 191 --INNYG--------DDDSDAAGGDQGSNGDDDDGGFADSGYDDDDMDD 229
Score = 34.6 bits (80), Expect = 0.17
Identities = 31/145 (21%), Positives = 36/145 (24%), Gaps = 22/145 (15%)
Query: 617 RGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGP-- 674
GG+ M G P P P P PP P +G G P G P PG
Sbjct: 79 SGGFLSGMFGGGAPRPPPAAPAVQPPAPPARPG-WGSGGPSQ-QGAGQQPGYAQPGPGSF 136
Query: 675 ------------GPNFSGSGPPGMFPPG-GPPNFGPNGPMGPPSGPSGPMGPPGGPNGPM 721
G G+G +F P G P G N
Sbjct: 137 LGGAAQTAAGVAGGMLLGNGLENLFGGHSQPAEIVDAIGEGGDGSGPAPADDTGINN--- 193
Query: 722 GPPGGGPGPNFPPGSGGPGNFGPNG 746
G G G+ G
Sbjct: 194 --YGDDDSDAAGGDQGSNGDDDDGG 216
Score = 33.9 bits (78), Expect = 0.25
Identities = 33/159 (20%), Positives = 46/159 (28%), Gaps = 20/159 (12%)
Query: 678 FSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPP--GGPNGPMGPPGGGPGPNFPPG 735
F G P PP P P P P SG G G P G F G
Sbjct: 87 FGGGAPR---PPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPGS----FLGG 139
Query: 736 SGGP------GNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPN-NSGGP 788
+ G NG F G + G + ++ G N
Sbjct: 140 AAQTAAGVAGGMLLGNGLENLFGGHSQPAEIVDAIGEGGDGSGPAPADDTGINNYGDDDS 199
Query: 789 PGPNMRDNDDRRGGGGNYNDNSYDNEDGNDWQGGDDNGW 827
+ G + D+ YD++D +D DD+ +
Sbjct: 200 DAAGGDQGSNGDDDDGGFADSGYDDDDMDD----DDDDF 234
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183). This
family consists of several eukaryotic proteins of around
360 residues in length. The function of this family is
unknown.
Length = 317
Score = 45.1 bits (107), Expect = 8e-05
Identities = 35/126 (27%), Positives = 39/126 (30%), Gaps = 17/126 (13%)
Query: 653 PGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMG 712
G G P G GG G G PG PPG +F P GP +GPS
Sbjct: 181 GGVRGGPRPERAGYGGGGGGGGGGGGGGGSGPGPPPPGFKSSF--PPPYGPGAGPS---- 234
Query: 713 PPGGPNGPMGPPGGGPGPNFPPGSGGPG----------NFGPNGPRPNFSGGPKGPNFGP 762
G +G GG GP F G G G N + R SG P
Sbjct: 235 -SGYGSGGTRSGQGGWGPGFWTGLGAGGALGYLFGSRRNNNSSYGRSYGSGSPSYSPSSS 293
Query: 763 KGPRGP 768
Sbjct: 294 SNSSSS 299
Score = 40.1 bits (94), Expect = 0.004
Identities = 35/135 (25%), Positives = 45/135 (33%), Gaps = 19/135 (14%)
Query: 667 PMF--PPGGPGPNFSGSGP-PGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGP 723
F G G G GG G GPP PPG + P
Sbjct: 175 KFFLSCGGVRGGPRPERAGYGGGGGGGGGGGGGGGSGPGPP--------PPGFKSSFPPP 226
Query: 724 PGGGPGPNFPPGSGGPGNFGPNGPRPNF-----SGGPKGPNFGPKGPRG--PGPNFGPGP 776
G G GP+ GSGG + P F +GG G FG + G ++G G
Sbjct: 227 YGPGAGPSSGYGSGGTRSGQGGW-GPGFWTGLGAGGALGYLFGSRRNNNSSYGRSYGSGS 285
Query: 777 NNYGPPNNSGGPPGP 791
+Y P ++S
Sbjct: 286 PSYSPSSSSNSSSSS 300
Score = 39.3 bits (92), Expect = 0.007
Identities = 33/152 (21%), Positives = 38/152 (25%), Gaps = 34/152 (22%)
Query: 722 GPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGP 781
G GGP P GG G G G GP P G +F P
Sbjct: 181 GGVRGGPRPERAGYGGGGGGGGGGGGGGGSGPGPP--------PPGFKSSFPPPYGPGAG 232
Query: 782 PNNSGGPPGPNMRDNDDRRGGGGNYNDNSYDNEDGNDWQGGDDNGWGDGGGQNYQNNERY 841
P++ G G R G GG W G G G GG Y R
Sbjct: 233 PSSGYGSGGT-------RSGQGG--------------WGPGFWTGLGAGGALGYLFGSRR 271
Query: 842 NNDRNNWEEPRRGRGGGKMRGGKRGRGRGGRG 873
NN+ +
Sbjct: 272 NNNSSY-GRSYGSGSP----SYSPSSSSNSSS 298
Score = 38.6 bits (90), Expect = 0.011
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 625 GGRPPGFPG-PGGPMFPPGGPPNFPPNFGPGPPG--PNFPGGPGPPMFPPGGPGPNFSGS 681
GG P G GG GG GP PPG +FP GP P G G + S
Sbjct: 185 GGPRPERAGYGGGGGGGGGGGGGGGSGPGPPPPGFKSSFPPPYGPGAGPSSGYGSGGTRS 244
Query: 682 GPPGMFP 688
G G P
Sbjct: 245 GQGGWGP 251
Score = 33.9 bits (78), Expect = 0.33
Identities = 27/123 (21%), Positives = 35/123 (28%), Gaps = 3/123 (2%)
Query: 626 GRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPG 685
G G P P + GG G G P G FPP SG
Sbjct: 181 GGVRGGPRPERAGYGGGGGGGGGGGGGGGSGPGPPPPGFKSS-FPPPYGPGAGPSSGYGS 239
Query: 686 MFPPGGPPNFGPNGPMGPPSGPSGP--MGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFG 743
G +GP G +G + G N G G P++ P S +
Sbjct: 240 GGTRSGQGGWGPGFWTGLGAGGALGYLFGSRRNNNSSYGRSYGSGSPSYSPSSSSNSSSS 299
Query: 744 PNG 746
+
Sbjct: 300 SSS 302
Score = 32.4 bits (74), Expect = 0.86
Identities = 30/113 (26%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 617 RGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGP 676
GG GG PGP PPG +FPP +GPG P+ G G GG GP
Sbjct: 197 GGGGGGGGGGGGGSGPGP----PPPGFKSSFPPPYGPGAG-PSSGYGSGGTRSGQGGWGP 251
Query: 677 NF-SGSGPPGM-----------FPPGGPPNFGPNGPMGPPSGPSGPMGPPGGP 717
F +G G G G + P S +
Sbjct: 252 GFWTGLGAGGALGYLFGSRRNNNSSYGRSYGSGSPSYSPSSSSNSSSSSSSSS 304
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 43.8 bits (103), Expect = 3e-04
Identities = 39/182 (21%), Positives = 52/182 (28%), Gaps = 10/182 (5%)
Query: 620 YPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGP--PMFPPGGPGPN 677
YPP +PP P P + P P + P P P
Sbjct: 122 YPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYP 181
Query: 678 FSGSGPPGMFPP--GGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNF--- 732
P +PP P + P GPP G PGG P F
Sbjct: 182 EESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSG 241
Query: 733 --PPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGP-RGPGPNFGPGPNNYGPPNNSGGPP 789
PP S G +G +GP P+ ++ P+G + + P P
Sbjct: 242 QQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATVLPQALPMSS 301
Query: 790 GP 791
P
Sbjct: 302 AP 303
Score = 38.8 bits (90), Expect = 0.011
Identities = 43/168 (25%), Positives = 49/168 (29%), Gaps = 3/168 (1%)
Query: 628 PPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMF 687
PP P P +PP P PP P P PP P S P
Sbjct: 103 PPQQVQSVPQQPTPQQEPYYPPPSQPQPP-PAQQPQAQQPQPPPQVPQQQQYQSPPQQPQ 161
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGPPGG-PNGPMGPPGGGPGPNFPPGSGGPGNFGPNG 746
PP + P P P P P P + +GP
Sbjct: 162 YQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQ 221
Query: 747 PRPNFSGGPKG-PNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNM 793
P P GGP G PN G + P P+ G Y P S G G
Sbjct: 222 PSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVA 269
Score = 33.4 bits (76), Expect = 0.55
Identities = 34/154 (22%), Positives = 42/154 (27%), Gaps = 13/154 (8%)
Query: 606 WTPQGSGDVDLRGGYPPAMGGRPPGFP---GPGGPMFPPGGPPNFPPNFGPGPPGPNFPG 662
PQ + G YP +P +P M PP+ P P
Sbjct: 166 PPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPY 225
Query: 663 GPGPPMFPPGGPGPNFSG---SGPPGMFPPGGPP----NFGPNGPMGPP-SGPSGPMGPP 714
G P P P+ S + GPP N G P S S P
Sbjct: 226 MYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYP 285
Query: 715 GGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPR 748
P + P P SGG +G R
Sbjct: 286 SLPAATVLPQALPMSSA--PMSGGGSGSPQSGNR 317
Score = 30.7 bits (69), Expect = 3.8
Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P M G P G P G P P +G P P+ + P G ++S
Sbjct: 223 SPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYST 282
Query: 681 SGPPG----MFPPGGPPNFGP---NGPMGPPSGPSGPMG 712
+ P + P P + P G P SG P+
Sbjct: 283 AYPSLPAATVLPQALPMSSAPMSGGGSGSPQSGNRVPID 321
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 42.9 bits (101), Expect = 6e-04
Identities = 27/112 (24%), Positives = 32/112 (28%), Gaps = 24/112 (21%)
Query: 680 GSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGP 739
G+G P GGP + PS PG P PP GG
Sbjct: 10 GAGGPR--SHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHR----PPPYGGS 63
Query: 740 GNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGP 791
+G G + P G + P G G N G PP P
Sbjct: 64 ------------NGDRHGG-YQPLGQQDPSLYAGLGQN-----GGGGLPPPP 97
Score = 39.1 bits (91), Expect = 0.009
Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 29/116 (25%)
Query: 762 PKGPRGPGPNFGPG----------PNNYGPPNNSGGPPGPNMRDNDDRRGGGGNYNDNSY 811
P G GP + GP P+++G + GPP P D + Y
Sbjct: 8 PLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPS-------HRPPPY 60
Query: 812 DNEDGNDWQ-----GGDD-------NGWGDGGGQNYQNNERYNNDRNNWEEPRRGR 855
+G+ G D G GG + R + +EEPR R
Sbjct: 61 GGSNGDRHGGYQPLGQQDPSLYAGLGQNGGGGLPPPPYSPRDQGSEHVYEEPRDAR 116
Score = 38.7 bits (90), Expect = 0.011
Identities = 26/107 (24%), Positives = 30/107 (28%), Gaps = 30/107 (28%)
Query: 605 EWTPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFP-----------PGGPPNFPPNFGP 653
E P G+G P G P G G P +P P P ++
Sbjct: 5 EMQPLGAG--------GPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHR 56
Query: 654 GPPGPNFPGGPGPPMFPPGGPGP--------NFSGSGPPGMFPPGGP 692
PP G P G P N G PP PP P
Sbjct: 57 PPPYGGSNGDRHGGYQPLGQQDPSLYAGLGQNGGGGLPP---PPYSP 100
Score = 36.4 bits (84), Expect = 0.071
Identities = 27/99 (27%), Positives = 32/99 (32%), Gaps = 19/99 (19%)
Query: 668 MFP--PGGPGPNFSGSGPPGMFPPGGPPNFG--PNGPMGPPSGPSGPMGPPGGPNGPMGP 723
M P GGP + G G P P +FG + P GPP P P G
Sbjct: 6 MQPLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRP-GPPVPEDYD--APSHRPPPYGG 62
Query: 724 PGGGPGPNFPP----------GSGGPGNFGPNGPRPNFS 752
G + P G G G G P P +S
Sbjct: 63 SNGDRHGGYQPLGQQDPSLYAGLGQNGGGG--LPPPPYS 99
>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2. Arsenite is a
carcinogenic compound which can act as a co-mutagen by
inhibiting DNA repair. Arsenite-resistance protein 2 is
thought to play a role in arsenite resistance.
Length = 211
Score = 41.3 bits (97), Expect = 8e-04
Identities = 29/100 (29%), Positives = 33/100 (33%), Gaps = 16/100 (16%)
Query: 666 PPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPG 725
P + P P P+ G P G P + P P P G P PM G
Sbjct: 128 PEIKPLQPPKPDPGGLAP-------GLPGYPPQTPQAL--------MPYGQPRPPMMGYG 172
Query: 726 GGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGP 765
G GP FPP G G + R K N GP
Sbjct: 173 RG-GPPFPPNQYGGGRGNYDEFRGQGGYYGKPRNRDLDGP 211
Score = 40.9 bits (96), Expect = 0.001
Identities = 24/83 (28%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 644 PPNFPPNFGPGPPGPNFPGGPGPPMFPPGGP--GPNFSGSGPPGMFPPGGPPNFGPN--- 698
P P P P PG P +PP P + PP M G P F PN
Sbjct: 127 LPEIKPLQPPKPDPGG--LAPGLPGYPPQTPQALMPYGQPRPPMMGYGRGGPPFPPNQYG 184
Query: 699 GPMGPPSGPSGPMGPPGGPNGPM 721
G G G G G P
Sbjct: 185 GGRGNYDEFRGQGGYYGKPRNRD 207
Score = 36.3 bits (84), Expect = 0.042
Identities = 24/79 (30%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 692 PPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGP-PGGGPGPNFP-PGSGGPGNFGPN--GP 747
P P P P G P P P P P G P P G GGP F PN G
Sbjct: 127 LPEIKPLQPPKPDPGGLAPGLPGYPPQTPQALMPYGQPRPPMMGYGRGGPP-FPPNQYGG 185
Query: 748 RPNFSGGPKGPNFGPKGPR 766
+G PR
Sbjct: 186 GRGNYDEFRGQGGYYGKPR 204
Score = 33.6 bits (77), Expect = 0.30
Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P PG PG P +PP P P P PP + G GPP FPP G G
Sbjct: 132 PLQPPKPDPGGLAPGLPGYPPQTPQALMPYGQPRPPMMGYGRG-GPP-FPPNQYG---GG 186
Query: 681 SGPPGMF--PPGGPPNFGPNGPMGP 703
G F G GP
Sbjct: 187 RGNYDEFRGQGGYYGKPRNRDLDGP 211
Score = 32.9 bits (75), Expect = 0.57
Identities = 24/68 (35%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 607 TPQGSGDVDLRGGYPP--AMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGP--NFPG 662
P G GYPP P G P P + GGPP FPPN G G F G
Sbjct: 137 KPDPGGLAPGLPGYPPQTPQALMPYGQPRPPMMGYGRGGPP-FPPNQYGGGRGNYDEFRG 195
Query: 663 GPGPPMFP 670
G P
Sbjct: 196 QGGYYGKP 203
Score = 31.7 bits (72), Expect = 1.3
Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPN 677
P + PG+P P G P PP G G GP F PP GG G
Sbjct: 137 KPDPGGLAPGLPGYPPQTPQALMPYGQPR-PPMMGYGRGGPPF-----PPNQYGGGRGNY 190
Query: 678 FSGSGPPGMFPPGGPPNFGPNGP 700
G G G P N +GP
Sbjct: 191 DEFRGQGGY--YGKPRNRDLDGP 211
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 41.9 bits (98), Expect = 0.001
Identities = 27/65 (41%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 648 PPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFP--PGGPPNFGPNGPMGPPS 705
NF GPP P P P P PP PG G P G P G PP F PM PP
Sbjct: 157 KSNFPMGPPSPWNPRFPPGP--PPPPPGFGRHGEKPSGWPPFLSGWPPPFPLGPPMIPPP 214
Query: 706 GPSGP 710
P P
Sbjct: 215 PPMSP 219
Score = 40.4 bits (94), Expect = 0.003
Identities = 32/80 (40%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 627 RPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGM 686
P G P P P FPPG PP PP FG G P +PP SG P
Sbjct: 160 FPMGPPSPWNPRFPPG-PPPPPPGFGRH--------GEKPSGWPP-------FLSGWPPP 203
Query: 687 FPPGGPPNFGPNGPMGPPSG 706
FP G PP P PM P G
Sbjct: 204 FPLG-PPMIPPPPPMSPDFG 222
Score = 31.1 bits (70), Expect = 2.3
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 619 GYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFG 652
G+PP + G PP FP G PM PP PP P+FG
Sbjct: 192 GWPPFLSGWPPPFP-LGPPMIPP--PPPMSPDFG 222
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 42.5 bits (100), Expect = 0.001
Identities = 26/120 (21%), Positives = 29/120 (24%), Gaps = 12/120 (10%)
Query: 608 PQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPG---------GPPNFPPNFGPGPPGP 658
P R Y PG PGP P G P P P
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695
Query: 659 NFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPN 718
P GPP G P P + P + + P P G G N
Sbjct: 696 QAPRPGGPPGGGGGLPPPPDLPAAAG---PAPCGSSLIASPTAPPEPEPPGAEQADGAEN 752
Score = 40.9 bits (96), Expect = 0.003
Identities = 30/120 (25%), Positives = 34/120 (28%), Gaps = 14/120 (11%)
Query: 647 FPPNFGPGPPGPN--------FPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPN 698
FPP F P P+ PG PGP P G P + P G P +
Sbjct: 635 FPPVFKTALPRPDYNRGGEAGGPGVPGPV--PVGMPA----HTARPSRVARGDPVRPTAH 688
Query: 699 GPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGP 758
P GPPGG G PP P P P G +
Sbjct: 689 HAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQAD 748
Score = 39.4 bits (92), Expect = 0.008
Identities = 23/118 (19%), Positives = 25/118 (21%), Gaps = 5/118 (4%)
Query: 670 PPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPM---GPPGGPNGPMGPPGG 726
P G GGP GP P G P P
Sbjct: 637 PVFKTALPRPDYNRGG--EAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRA 694
Query: 727 GPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNN 784
P GG G P P +G + P P PG N
Sbjct: 695 PQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAEN 752
Score = 30.5 bits (69), Expect = 4.3
Identities = 25/126 (19%), Positives = 29/126 (23%), Gaps = 19/126 (15%)
Query: 675 GPNFSGSGPPGMFPP--GGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNF 732
G G FPP G GP P GP P
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677
Query: 733 PPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPN 792
G P P + + P+ PR GP G G P + P P
Sbjct: 678 ARG-------DPVRPTAHHAALR-----APQAPRPGGPPGGGGGLPPPPDLPAAAGPAPC 725
Query: 793 MRDNDD 798
Sbjct: 726 GSSLIA 731
>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor
family. Included in this family of heterogeneous
ribonucleoproteins are PTB (polypyrimidine tract binding
protein ) and hnRNP-L. These proteins contain four RNA
recognition motifs (rrm: pfam00067).
Length = 481
Score = 42.1 bits (99), Expect = 0.001
Identities = 19/87 (21%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
Query: 676 PNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPG 735
P+ G PG+ P S GGP P+ P+ PP
Sbjct: 191 PDLPGRRDPGLDQTHRQ-RQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPS 249
Query: 736 SGGPGNFGPNGPRPNFSGGPKGPNFGP 762
P S GP G G
Sbjct: 250 RYRPAYEAAPLAPAISSYGPAGGGPGS 276
Score = 37.9 bits (88), Expect = 0.026
Identities = 16/73 (21%), Positives = 18/73 (24%), Gaps = 7/73 (9%)
Query: 622 PAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
PA+ G+ P G G G GPP P P
Sbjct: 210 PALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGP-PSRYRPAYEAAPLAPA----- 263
Query: 682 GPPGMFPPGGPPN 694
P GG P
Sbjct: 264 -ISSYGPAGGGPG 275
Score = 37.5 bits (87), Expect = 0.031
Identities = 21/86 (24%), Positives = 23/86 (26%), Gaps = 13/86 (15%)
Query: 658 PNFPGGPGPPM-------FPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGP 710
P+ PG P + P S G MGPP GP
Sbjct: 191 PDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250
Query: 711 MG------PPGGPNGPMGPPGGGPGP 730
P GP GGGPG
Sbjct: 251 YRPAYEAAPLAPAISSYGPAGGGPGS 276
Score = 33.2 bits (76), Expect = 0.55
Identities = 21/95 (22%), Positives = 25/95 (26%), Gaps = 10/95 (10%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P G R PG P P+ G + GGP P+
Sbjct: 191 PDLPGRRDPGLDQTHRQRQPALLG--QHPSSYGH-DGYSSHGGPLAPLAGG-------DR 240
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPG 715
GPP P P + S G PG
Sbjct: 241 MGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPG 275
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 42.4 bits (99), Expect = 0.001
Identities = 45/200 (22%), Positives = 53/200 (26%), Gaps = 28/200 (14%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPP--NFPPNFGPGPPG----------PNFPGGPGPPM 668
P A P P PP G P P P P P PP+
Sbjct: 185 PGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPL 244
Query: 669 FPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPM------GPPSGPSGPMGPPG--GPNGP 720
P + P P + GP PM GP PP G
Sbjct: 245 QPQTASQQSPQPPAPSSRHPQ--SSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQS 302
Query: 721 MGPPGGGPGPNFPPGSGGPGNFGPNGPRP----NFSGGPKGPNFGPKGPRGPGPNFGPGP 776
PP P P P +P P P+ P P P P
Sbjct: 303 QVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPP-PTTPIPQLPN-Q 360
Query: 777 NNYGPPNNSGGPPGPNMRDN 796
++ PP+ G P P M N
Sbjct: 361 SHKHPPHLQGPSPFPQMPSN 380
Score = 37.7 bits (87), Expect = 0.029
Identities = 27/110 (24%), Positives = 32/110 (29%), Gaps = 6/110 (5%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPG--GPPNFPPNFGPGPPGPNFPGGPGPPM----FPP 671
+PP + P P P PP + PP P G P P F
Sbjct: 400 SAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTS 459
Query: 672 GGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPM 721
GG P P P + P G SG PG P P+
Sbjct: 460 GGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPI 509
Score = 36.6 bits (84), Expect = 0.062
Identities = 36/143 (25%), Positives = 44/143 (30%), Gaps = 7/143 (4%)
Query: 632 PGPGGPMFPPGGPPNFPPNFGPGP----PGPNFPGGPGPPM--FPPGGPGPNFSGSGPPG 685
P GP P P N PP P P + P PP+ P P + P
Sbjct: 366 PHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVL 425
Query: 686 MFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPN 745
PP + G SGP P G P GP P+ P + +
Sbjct: 426 TQSQSLPPKASTHPHSGLHSGPPQSPFAQH-PFTSGGLPAIGPPPSLPTSTPAAPPRASS 484
Query: 746 GPRPNFSGGPKGPNFGPKGPRGP 768
G +P S P GP P
Sbjct: 485 GSQPPGSALPSSGGCAGPGPPLP 507
Score = 35.4 bits (81), Expect = 0.15
Identities = 36/172 (20%), Positives = 43/172 (25%), Gaps = 16/172 (9%)
Query: 638 MFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGP------------GPNFSGSGPPG 685
+ P GPP+ G P P PP G S P
Sbjct: 172 LLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPS 231
Query: 686 MFPPGGPPNFGPNGPM----GPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGN 741
+ P P P P P P+ P + GPP P P +
Sbjct: 232 LHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSS 291
Query: 742 FGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNM 793
P S P P P P PP PP P+M
Sbjct: 292 NPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSM 343
Score = 31.2 bits (70), Expect = 2.7
Identities = 32/140 (22%), Positives = 37/140 (26%), Gaps = 10/140 (7%)
Query: 643 GPPNFPPNFGPGPPGPNF-PGGPGPPMFPPGGPGP--NFSGSGPPGMFPPGGPPNFGPNG 699
GP FP PP P P P PP P P P PP +
Sbjct: 370 GPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQ 429
Query: 700 PMGPPSGPSGPMGPPGGPNGPMGP-----PGGGPGPNFPPGSGGPGNFGPNGPRPNFSGG 754
+ P + G GP GG P PP P + PR +
Sbjct: 430 SLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSL--PTSTPAAPPRASSGSQ 487
Query: 755 PKGPNFGPKGPRGPGPNFGP 774
P G G P
Sbjct: 488 PPGSALPSSGGCAGPGPPLP 507
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 40.8 bits (95), Expect = 0.003
Identities = 25/85 (29%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 692 PPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNF 751
PP F + PP PSG G P P PGP G GP P
Sbjct: 255 PPYFEESKGYEPPPAPSG--GSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPA- 311
Query: 752 SGGPKGPNFGPKGPRGPGPNFGPGP 776
G + G PGP P P
Sbjct: 312 -----GRDGAAGGEPKPGPP-RPAP 330
Score = 36.9 bits (85), Expect = 0.046
Identities = 31/116 (26%), Positives = 32/116 (27%), Gaps = 11/116 (9%)
Query: 628 PPGFPGPGGPMFPP---GGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPP 684
PP F G PP GG P P + P P G P GG G GP
Sbjct: 255 PPYFEESKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGE-----GPE 309
Query: 685 GMFP---PGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSG 737
GG P GP P P G P P P G
Sbjct: 310 PAGRDGAAGGEPKPGPPRPAPDADRPEGWPSLEAITFPPPTPATPAVPRARPVIVG 365
Score = 36.1 bits (83), Expect = 0.071
Identities = 21/94 (22%), Positives = 23/94 (24%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P GG P P GP P G G P P
Sbjct: 268 PAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPR 327
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPP 714
P P G P P P+ P+ P P
Sbjct: 328 PAPDADRPEGWPSLEAITFPPPTPATPAVPRARP 361
Score = 35.0 bits (80), Expect = 0.17
Identities = 31/114 (27%), Positives = 32/114 (28%), Gaps = 13/114 (11%)
Query: 662 GGPGPPMFP---PGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPN 718
GG PP F P P SG P PPG P G G G
Sbjct: 251 GGVVPPYFEESKGYEPPPAPSGGSPA---PPGDDRPEAKPEPGPVEDGAPGRETGGEGEG 307
Query: 719 GPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGP--NFGPKGPRGPGP 770
G G PG P P+ RP G P F P P P
Sbjct: 308 PEPAGRDGAAGGEPKPGPPRP---APDADRP--EGWPSLEAITFPPPTPATPAV 356
Score = 31.1 bits (70), Expect = 2.7
Identities = 22/79 (27%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 615 DLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPM-FPPGG 673
D R P G G PG G P G P P P P P P G
Sbjct: 280 DDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPG-PPRPAPDADRPEGW 338
Query: 674 PGPNFSGSGPPGMFPPGGP 692
P PP P P
Sbjct: 339 PSLEAITFPPPTPATPAVP 357
>gnl|CDD|216868 pfam02084, Bindin, Bindin.
Length = 239
Score = 39.1 bits (91), Expect = 0.005
Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 642 GGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPM 701
G N+P P G N+P P G GP G GG P G P
Sbjct: 2 GNMQNYPQAMNPQMGGGNYPAPGQPAQQGYANQGM----GGPVG---GGGGPGAGGGAPG 54
Query: 702 GPPSGPSGPMGPPGGPNGPMGPPGGGPG 729
GP G G G P G G
Sbjct: 55 GPVGGGGGGSGGPPGGGEVAGEAEDAMS 82
Score = 37.6 bits (87), Expect = 0.016
Identities = 26/82 (31%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 659 NFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSG-PMGPPGGP 717
N+P P M GG G + G GP G G P G P GP GG
Sbjct: 6 NYPQAMNPQM---GGGNYPAPGQPAQQGYANQGMG--GPVGGGGGPGAGGGAPGGPVGGG 60
Query: 718 NGPM-GPPGGGPGPNFPPGSGG 738
G GPPGGG +
Sbjct: 61 GGGSGGPPGGGEVAGEAEDAMS 82
Score = 37.6 bits (87), Expect = 0.018
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 682 GPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGN 741
P M P G N+ G P G G G GP GG P P G GG G+
Sbjct: 7 YPQAMNPQMGGGNYPAPG--QPAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGGGGS 64
Query: 742 FGPNGPRP 749
GP G
Sbjct: 65 GGPPGGGE 72
Score = 32.9 bits (75), Expect = 0.58
Identities = 16/69 (23%), Positives = 18/69 (26%)
Query: 608 PQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPP 667
PQ G G P G G GP G PG P G G + G
Sbjct: 13 PQMGGGNYPAPGQPAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGGGGSGGPPGGGE 72
Query: 668 MFPPGGPGP 676
+
Sbjct: 73 VAGEAEDAM 81
Score = 31.8 bits (72), Expect = 1.2
Identities = 21/99 (21%), Positives = 24/99 (24%), Gaps = 8/99 (8%)
Query: 722 GPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGP 781
G P P GG P P G GP G G G G G
Sbjct: 2 GNMQNYPQAMNPQM-GGGNYPAPGQPAQQGYANQ-----GMGGPVGGGGGPGAGGGAPGG 55
Query: 782 PNNSGGPP--GPNMRDNDDRRGGGGNYNDNSYDNEDGND 818
P GG GP + Y + +
Sbjct: 56 PVGGGGGGSGGPPGGGEVAGEAEDAMSEFDDYSSSSIEE 94
Score = 31.4 bits (71), Expect = 1.9
Identities = 22/81 (27%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
Query: 702 GPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGP-GNFGPNGPRPNFSGGP-KGPN 759
G M P G P G GGP G G G GGP G
Sbjct: 2 GNMQNYPQAMNPQMGGGNYPAPGQPAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGG 61
Query: 760 FGPKGPRGPGPNFGPGPNNYG 780
G GP G G G +
Sbjct: 62 GGSGGPPGGGEVAGEAEDAMS 82
Score = 30.6 bits (69), Expect = 3.0
Identities = 27/98 (27%), Positives = 28/98 (28%), Gaps = 3/98 (3%)
Query: 620 YPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGP-GPNF 678
Y P GG +P G P G GP GG G P G P GP
Sbjct: 1 YGNMQNYPQAMNPQMGGGNYPAPGQPAQQGYANQGMGGP--VGGGGGPGAGGGAPGGPVG 58
Query: 679 SGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGG 716
G G G P GG M S G
Sbjct: 59 GGGGGSGGPPGGGEVAGEAEDAMSEFDDYSSSSIEEGD 96
Score = 30.2 bits (68), Expect = 3.7
Identities = 26/109 (23%), Positives = 32/109 (29%), Gaps = 16/109 (14%)
Query: 712 GPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGP--G 769
G M P GG G PG + G GGP G GP G G
Sbjct: 2 GNMQNYPQAMNPQMGG-GNYPAPGQPAQQGYANQGM-----GGPVGGGGGPGAGGGAPGG 55
Query: 770 PNFGPGPNNYGPPNNSGGPPGPNMRDNDDRRGGGGNYNDNSYDNEDGND 818
P G G + GPP ++D S + + D
Sbjct: 56 PVGGGGGGSGGPPGGGEVAGEAE--------DAMSEFDDYSSSSIEEGD 96
Score = 30.2 bits (68), Expect = 3.9
Identities = 20/77 (25%), Positives = 21/77 (27%), Gaps = 2/77 (2%)
Query: 698 NGPMGPPSGPSGPMGPPGGPNGPMGPPG--GGPGPNFPPGSGGPGNFGPNGPRPNFSGGP 755
M P G P G G G PG+GG GP G SGGP
Sbjct: 8 PQAMNPQMGGGNYPAPGQPAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGGGGSGGP 67
Query: 756 KGPNFGPKGPRGPGPNF 772
G F
Sbjct: 68 PGGGEVAGEAEDAMSEF 84
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 39.5 bits (92), Expect = 0.006
Identities = 22/73 (30%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 653 PGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMG 712
P PP P+ P PP P P P PN P P P+ P P
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPPPA------APPAPQPDDPNAAPPPPPADPNAPPPPPV 96
Query: 713 PPGGPNGPMGPPG 725
P P P PG
Sbjct: 97 DPNAPPPPAPEPG 109
Score = 38.7 bits (90), Expect = 0.010
Identities = 28/83 (33%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 644 PPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGP 703
PP PP+ P P P P PP PP P PP PP PN P P
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQ------PDDPNAAPP--PPPADPNAPPPP 94
Query: 704 PSGPSGPMGPPGGPNGPMGPPGG 726
P P+ P P P GG
Sbjct: 95 PVDPNAPPPPAPEPGRIDNAVGG 117
Score = 38.3 bits (89), Expect = 0.011
Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 641 PGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGP 700
P PP P P P P P P P P + PP P PP P
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPPPAAP--PAPQPDDPNAAPPPPPADPNAPPP------P 94
Query: 701 MGPPSGPSGPMGPPGGPNGPMG 722
P+ P P PG + +G
Sbjct: 95 PVDPNAPPPPAPEPGRIDNAVG 116
Score = 36.8 bits (85), Expect = 0.037
Identities = 18/64 (28%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 628 PPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMF 687
P P PP PP P P P PP P P P + PP
Sbjct: 48 PSTAAAAPAPAAPPPPPPPAAPP--APQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPA 105
Query: 688 PPGG 691
P G
Sbjct: 106 PEPG 109
Score = 35.3 bits (81), Expect = 0.13
Identities = 20/83 (24%), Positives = 20/83 (24%), Gaps = 8/83 (9%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P P P P P PP P P P P PP
Sbjct: 34 PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPAD------ 87
Query: 681 SGPPGMFPPGGPPNFGPNGPMGP 703
P PP PN P P
Sbjct: 88 --PNAPPPPPVDPNAPPPPAPEP 108
Score = 32.9 bits (75), Expect = 0.58
Identities = 15/62 (24%), Positives = 16/62 (25%)
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGP 747
PP PP P+ P P PP PP P P P
Sbjct: 47 PPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAP 106
Query: 748 RP 749
P
Sbjct: 107 EP 108
Score = 32.2 bits (73), Expect = 1.0
Identities = 20/78 (25%), Positives = 20/78 (25%), Gaps = 4/78 (5%)
Query: 703 PPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGP 762
PP P P P PP P P P P P P P
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNA----APPPPPADPNAPPPPPVDP 98
Query: 763 KGPRGPGPNFGPGPNNYG 780
P P P G N G
Sbjct: 99 NAPPPPAPEPGRIDNAVG 116
Score = 31.8 bits (72), Expect = 1.4
Identities = 22/77 (28%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 664 PGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGG--PNGPM 721
P PP PP P P PP P P P PP PN P
Sbjct: 41 PAPPPPPPSTAAA------APAPAAPPPPP--PPAAPPAPQPDDPNAAPPPPPADPNAPP 92
Query: 722 GPPGGGPGPNFPPGSGG 738
PP P P G
Sbjct: 93 PPPVDPNAPPPPAPEPG 109
Score = 30.2 bits (68), Expect = 4.7
Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 697 PNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPK 756
P P + + P P P PP P P + PN P P P
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPAD--PNAPPP----PPV 96
Query: 757 GPNFGPKGPRGPG 769
PN P PG
Sbjct: 97 DPNAPPPPAPEPG 109
>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR. This region is found
to the N-terminus of the pfam00170 transcription factor
domain. It is between 150 and 200 amino acids in length.
The N-terminal half is rather rich in proline residues
and has been termed the PRD (proline rich domain),
whereas the C-terminal half is more polar and has been
called the MFMR (multifunctional mosaic region). It has
been suggested that this family is composed of three
sub-families called A, B and C, classified according to
motif composition. It has been suggested that some of
these motifs may be involved in mediating
protein-protein interactions. The MFMR region contains a
nuclear localisation signal in bZIP opaque and GBF-2.
The MFMR also contains a transregulatory activity in
TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention
signals.
Length = 189
Score = 37.5 bits (87), Expect = 0.011
Identities = 27/97 (27%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 640 PPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGG-------P 692
P PP F + P + GP PM PP G P + M+PPGG P
Sbjct: 40 PRPPPPYFNSSVASSPQPHPYMWGPQQPMMPPYGTPPPY-----AAMYPPGGVYAHPSMP 94
Query: 693 PNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPG 729
P P P PS PG M
Sbjct: 95 PGSHPFSPYAMPS-----AEVPGSTPLSMETDAKSSD 126
>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies).
Members of this family belong to the collagen
superfamily. Collagens are generally extracellular
structural proteins involved in formation of connective
tissue structure. The alignment contains 20 copies of
the G-X-Y repeat that forms a triple helix. The first
position of the repeat is glycine, the second and third
positions can be any residue but are frequently proline
and hydroxyproline. Collagens are post translationally
modified by proline hydroxylase to form the
hydroxyproline residues. Defective hydroxylation is the
cause of scurvy. Some members of the collagen
superfamily are not involved in connective tissue
structure but share the same triple helical structure.
Length = 60
Score = 34.4 bits (80), Expect = 0.017
Identities = 37/65 (56%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 654 GPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNF-GPNGPMGPPSGPSGPMG 712
GPPGP P GP P PPG PGP GPPG P GPP GP GP GPP GP G G
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPP----GPPGPPGPPGPPGPPGPPGPPGPP-GPPGAPG 55
Query: 713 PPGGP 717
PG P
Sbjct: 56 APGPP 60
Score = 31.7 bits (73), Expect = 0.12
Identities = 36/66 (54%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 704 PSGPSGPMGPPGGPNGPMGPPG--GGPGPNFPPG-SGGPGNFGPNGPRPNFSGGPKGPNF 760
P GP GP GPPG P GP GPPG G PGP PPG G PG GP GP GP G
Sbjct: 2 PPGPPGPPGPPGPP-GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPP-----GPPGAP- 54
Query: 761 GPKGPR 766
G GP
Sbjct: 55 GAPGPP 60
Score = 31.3 bits (72), Expect = 0.21
Identities = 35/65 (53%), Positives = 35/65 (53%), Gaps = 14/65 (21%)
Query: 706 GPSGPMGPPGGPNGPMGPPG--GGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPK 763
GP GP GPPG P GPPG G PGP PPG PG GP GP GP GP GP
Sbjct: 1 GPPGPPGPPGPP----GPPGPPGPPGPPGPPGP--PGPPGPPGPP-----GPPGPP-GPP 48
Query: 764 GPRGP 768
GP G
Sbjct: 49 GPPGA 53
Score = 30.1 bits (69), Expect = 0.57
Identities = 31/58 (53%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 628 PPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPG 685
PPG PGP GP PPG P P PGPPGP P GP P PPG PG G PG
Sbjct: 5 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGA----PGAPG 58
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 38.3 bits (90), Expect = 0.017
Identities = 16/79 (20%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 665 GPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPP 724
GPP GG GP G P P G GP+ + P+
Sbjct: 390 GPPSPGGGGGGPPGGGGAPG---APAAAAAPGAAAAAPAAGGPAAALAAV--PDAAAAAA 444
Query: 725 GGGPGPNFPPGSGGPGNFG 743
P + +F
Sbjct: 445 APPAPAAAPQPAVRLNSFE 463
Score = 36.0 bits (84), Expect = 0.092
Identities = 12/71 (16%), Positives = 14/71 (19%), Gaps = 1/71 (1%)
Query: 623 AMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSG 682
P G G G P G P GGP + +
Sbjct: 389 EGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAP-AAGGPAAALAAVPDAAAAAAAPP 447
Query: 683 PPGMFPPGGPP 693
P P
Sbjct: 448 APAAAPQPAVR 458
Score = 35.3 bits (82), Expect = 0.16
Identities = 16/79 (20%), Positives = 18/79 (22%), Gaps = 7/79 (8%)
Query: 672 GGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPN 731
GP G G P PGG G P + GGP +
Sbjct: 389 EGPPSPGGGGGGP----PGGGGAPGAPAAAAAPG-AAAAAPAAGGPAAALAAVPDAAAA- 442
Query: 732 FPPGSGGPGNFGPNGPRPN 750
P R N
Sbjct: 443 -AAAPPAPAAAPQPAVRLN 460
Score = 34.9 bits (81), Expect = 0.18
Identities = 13/70 (18%), Positives = 17/70 (24%), Gaps = 1/70 (1%)
Query: 642 GGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFP-PGGPPNFGPNGP 700
GPP+ G P G PG P P +G + P
Sbjct: 389 EGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPA 448
Query: 701 MGPPSGPSGP 710
P+
Sbjct: 449 PAAAPQPAVR 458
Score = 34.9 bits (81), Expect = 0.21
Identities = 19/79 (24%), Positives = 21/79 (26%), Gaps = 9/79 (11%)
Query: 628 PPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS-GPPGM 686
PP G GG PPGG PG P G GGP +
Sbjct: 391 PPSPGGGGGG--PPGGGG------APGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAA 442
Query: 687 FPPGGPPNFGPNGPMGPPS 705
P P + S
Sbjct: 443 AAAPPAPAAAPQPAVRLNS 461
Score = 32.6 bits (75), Expect = 0.98
Identities = 17/70 (24%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Query: 635 GGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPN 694
G P GG PP G P P PG P GP + + P P
Sbjct: 390 GPPSPGGGGGG--PPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447
Query: 695 FGPNGPMGPP 704
P
Sbjct: 448 APAAAPQPAV 457
Score = 32.2 bits (74), Expect = 1.3
Identities = 14/67 (20%), Positives = 15/67 (22%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPN 677
P GG PPG G G P G P P P P
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450
Query: 678 FSGSGPP 684
+
Sbjct: 451 AAPQPAV 457
Score = 32.2 bits (74), Expect = 1.4
Identities = 13/76 (17%), Positives = 17/76 (22%), Gaps = 4/76 (5%)
Query: 706 GPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKG-PNFGPKG 764
PS G G P G P + P GP + P
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAP---AAGGPAAALAAVPDAAAAAAAPP 447
Query: 765 PRGPGPNFGPGPNNYG 780
P N++
Sbjct: 448 APAAAPQPAVRLNSFE 463
Score = 31.8 bits (73), Expect = 1.8
Identities = 16/70 (22%), Positives = 17/70 (24%), Gaps = 8/70 (11%)
Query: 711 MGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKG----PNFGPKGPR 766
P G G P GGG P G P G P+
Sbjct: 390 GPPSPGGGGGGPPGGGGA----PGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAA 445
Query: 767 GPGPNFGPGP 776
P P P P
Sbjct: 446 PPAPAAAPQP 455
Score = 31.0 bits (71), Expect = 3.0
Identities = 13/71 (18%), Positives = 16/71 (22%), Gaps = 2/71 (2%)
Query: 721 MGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYG 780
P GG G P GG P + GP P+
Sbjct: 390 GPPSPGGGGG--GPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447
Query: 781 PPNNSGGPPGP 791
P + P
Sbjct: 448 APAAAPQPAVR 458
Score = 31.0 bits (71), Expect = 3.0
Identities = 9/67 (13%), Positives = 11/67 (16%)
Query: 699 GPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGP 758
G G G G PG G P+ +
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAA 451
Query: 759 NFGPKGP 765
P
Sbjct: 452 APQPAVR 458
Score = 30.6 bits (70), Expect = 4.4
Identities = 12/76 (15%), Positives = 15/76 (19%), Gaps = 2/76 (2%)
Query: 678 FSGSGPPGMFPPGGPPNFG--PNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPG 735
P GGPP G P P + + P G
Sbjct: 387 LQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAP 446
Query: 736 SGGPGNFGPNGPRPNF 751
P +F
Sbjct: 447 PAPAAAPQPAVRLNSF 462
>gnl|CDD|219837 pfam08430, Fork_head_N, Forkhead N-terminal region. The region
described in this family is found towards the N-terminus
of various eukaryotic fork head/HNF-3-related
transcription factors (which contain the pfam00250
domain). These proteins play key roles in embryogenesis,
maintenance of differentiated cell states, and
tumorigenesis.
Length = 137
Score = 36.1 bits (83), Expect = 0.018
Identities = 27/123 (21%), Positives = 30/123 (24%), Gaps = 4/123 (3%)
Query: 619 GYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNF 678
YP A G M + G N G GP G +
Sbjct: 2 YYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAM--NGMSSSS 59
Query: 679 SGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGG 738
PG G P MG PSG MG G P G G +
Sbjct: 60 MNGMSPGYGGAGSPMGMMGMSSMGTSLSPSGTMGAMGP--MPAGSGGSLSPNMSMSRASS 117
Query: 739 PGN 741
N
Sbjct: 118 QNN 120
>gnl|CDD|218116 pfam04503, SSDP, Single-stranded DNA binding protein, SSDP. This
is a family of eukaryotic single-stranded DNA binding
proteins with specificity to a pyrimidine-rich element
found in the promoter region of the alpha2(I) collagen
gene.
Length = 293
Score = 37.8 bits (87), Expect = 0.020
Identities = 59/195 (30%), Positives = 67/195 (34%), Gaps = 17/195 (8%)
Query: 612 GDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPP 671
GD +G PP G G P P +PGGP PP+ P
Sbjct: 28 GDGMPQGPDPPGFFQGAGGKQHQQKKTPQSGSTPQMQNTTSQPFMSPRYPGGPRPPLRMP 87
Query: 672 GGPGPNFSGSGP---PGMFP----PGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPP 724
P GS P GM P G P GP M PP G + P G M PP
Sbjct: 88 NQPPGGVPGSQPLLPGGMDPTVRQQGHPNMGGPMQRMTPPRG-MKSLDGPQNYGGGMRPP 146
Query: 725 GGGPGPNFPPGSGGPG-NFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPN 783
PN G PG N GP RP + P N P PG GP P GPP
Sbjct: 147 -----PNSLLGPAMPGMNMGPGLGRPWPN--PISANSIPYSSSSPGEYTGP-PGGGGPPG 198
Query: 784 NSGGPPGPNMRDNDD 798
P + ++ D
Sbjct: 199 TPIMPSPADSTNSSD 213
Score = 32.0 bits (72), Expect = 1.2
Identities = 44/156 (28%), Positives = 46/156 (29%), Gaps = 22/156 (14%)
Query: 649 PNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPS 708
P G PPG P GP PP F G G P +
Sbjct: 20 PVLGNMPPGDGMPQGPDPPGFFQGAGGKQ--------------HQQKKTPQSGSTPQMQN 65
Query: 709 GPMGPPGGPNGPMGPPGGGPGPNFPPGS---GGPGNFGPNGPRPNFSGGPK--GPNFGPK 763
P P P GP PN PPG P G P G P GP
Sbjct: 66 TTSQPFMSPRYPGGPRPPLRMPNQPPGGVPGSQPLLPGGMDPTVRQQGHPNMGGPMQRMT 125
Query: 764 GPRGPGPNFGP---GPNNYGPPNNSGGPPGPNMRDN 796
PRG GP G PPN+ GP P M
Sbjct: 126 PPRGMKSLDGPQNYGGGMRPPPNSLLGPAMPGMNMG 161
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 38.3 bits (89), Expect = 0.022
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 586 NSGRIPELEDT-VSYIDGEEEWTPQGSGDVDLRGGYPPAMGGRPPGF--PGPGGPMFPPG 642
+S P+L VS + P+ G V R GY P + PG G PG
Sbjct: 856 SSSTFPQLSRVLVSVRE------PRTEGGV--RVGYAPTLAEALDQVFGPGTGRVATAPG 907
Query: 643 GPPNFPPNFGPGPPGPNFPGGP----GPPMFPPGGP 674
G P G GPP P P PP PP GP
Sbjct: 908 GDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGP 943
Score = 31.8 bits (72), Expect = 1.8
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 660 FPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNG 719
F G G PGG + S PP P GPP P + PP P PP GP+
Sbjct: 895 FGPGTGRVATAPGGD----AASAPP---PGAGPP--APPQAVPPPRTTQPPAAPPRGPDV 945
Query: 720 P 720
P
Sbjct: 946 P 946
Score = 31.4 bits (71), Expect = 2.7
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGG 726
PGG P GPP+ P + PP P PP G
Sbjct: 905 APGGDAASAPPPGAGPPA-PPQAVPPPRTTQPPAAPPRG 942
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1. This region is found
in some of the Diaphanous related formins (Drfs). It
consists of low complexity repeats of around 12
residues.
Length = 160
Score = 36.5 bits (84), Expect = 0.023
Identities = 44/118 (37%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 622 PAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
P PP P PG PP PP P PP P PG PP P P +G
Sbjct: 43 PGGAAIPPPPPLPGVAGIPP--PPPLPGATAIPPPPPL----PGAAGIPPPPPLPGGAGI 96
Query: 682 GPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGP 739
PP PGG P G P P P PG P P PPG G P P G G P
Sbjct: 97 PPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPPPGMGSPPPPPFGFGVP 154
Score = 33.4 bits (76), Expect = 0.24
Identities = 44/113 (38%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 622 PAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
P + G PP P PG PP PP P G PP P PGG G P PP PG
Sbjct: 55 PGVAGIPPPPPLPGATAIPP--PPPLPGAAGIPPP-PPLPGGAGIPPPPPPLPGGAAVPP 111
Query: 682 GPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPP 734
PP PG PP P P G G PP G P PP G P P
Sbjct: 112 PPPLPGGPGVPP------PPPPFPGAPGIPPPPPGMGSPPPPPFGFGVPAAPV 158
Score = 33.0 bits (75), Expect = 0.28
Identities = 38/99 (38%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
Query: 622 PAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
P PP P PG PP PP P G PP P PGG P PP GP G
Sbjct: 67 PGATAIPPPPPLPGAAGIPP--PPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGP---GV 121
Query: 682 GPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGP 720
PP PG P P MG P P G P P P
Sbjct: 122 PPPPPPFPGAPGIPPPPPGMGSPPPPPFGFGVPAAPVLP 160
Score = 33.0 bits (75), Expect = 0.35
Identities = 56/154 (36%), Positives = 59/154 (38%), Gaps = 8/154 (5%)
Query: 622 PAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGS 681
P G PP P PGG PP PP P G PP P PG PP P P +G
Sbjct: 7 PGGVGIPPPPPLPGGVCIPP--PPPLPGGTGIPPP----PPLPGGAAIPPPPPLPGVAGI 60
Query: 682 GPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGN 741
PP P G P P+ +G P PGG P PP G PP PG
Sbjct: 61 PPPPPLP--GATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGG 118
Query: 742 FGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPG 775
G P P F G P P P P P FG G
Sbjct: 119 PGVPPPPPPFPGAPGIPPPPPGMGSPPPPPFGFG 152
Score = 30.3 bits (68), Expect = 2.5
Identities = 47/148 (31%), Positives = 49/148 (33%), Gaps = 6/148 (4%)
Query: 628 PPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMF 687
PP P PGG PP PP G P P PG PP P P + PP
Sbjct: 1 PPPPPLPGGVGIPP------PPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPL 54
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGP 747
P P P P P+ G P PGG P PP G P P
Sbjct: 55 PGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPP 114
Query: 748 RPNFSGGPKGPNFGPKGPRGPGPNFGPG 775
P G P P P P P P G G
Sbjct: 115 LPGGPGVPPPPPPFPGAPGIPPPPPGMG 142
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 38.1 bits (88), Expect = 0.023
Identities = 30/129 (23%), Positives = 34/129 (26%), Gaps = 15/129 (11%)
Query: 661 PGGPGPPMFPPGGPGPNFSGSGPPGMFPPGG---PPNFGPNGPMGPPSGPSGPMGPPGGP 717
P G G P G SG P G P P M P S P P
Sbjct: 373 PSGGGAS--APSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAP 430
Query: 718 -------NGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGP 770
+ P PP G P P + P P S P G P
Sbjct: 431 SPRVPWDDAPPAPPRSG-IPPRPAPRMPEASPVPGAPDSVASASDAPPTLG--DPSDTAE 487
Query: 771 NFGPGPNNY 779
+ GP +
Sbjct: 488 HTPSGPRTW 496
Score = 36.6 bits (84), Expect = 0.072
Identities = 28/118 (23%), Positives = 34/118 (28%), Gaps = 16/118 (13%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPG--GPPNFPPNFG----------PGP---PGPNFPG 662
G P+ G + PG GP P G P P P P P
Sbjct: 377 GASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPW 436
Query: 663 GPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGP 720
PP PP P P P G P+ + PP+ P+GP
Sbjct: 437 DDAPPA-PPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGP 493
Score = 35.4 bits (81), Expect = 0.13
Identities = 30/93 (32%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 704 PSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGP--KGPNFG 761
PSG G P G GP GG PG+ GP P S P P+
Sbjct: 373 PSG--GGASAPSGSAAE-GPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAA 429
Query: 762 PKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMR 794
P PR P + P P SG PP P R
Sbjct: 430 P-SPRVPWDDAPPA------PPRSGIPPRPAPR 455
Score = 33.5 bits (76), Expect = 0.55
Identities = 33/139 (23%), Positives = 41/139 (29%), Gaps = 20/139 (14%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P G P GP GG P GP G G P P P P+ +
Sbjct: 373 PSGGGASAPSGSAAEGP--ASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAP 430
Query: 681 SGPPGMFPPGGPPNFGPNGPM--GPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGG 738
S P P PP+ P + P P P P G + S
Sbjct: 431 S---------------PRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDA 475
Query: 739 PGNFG-PNGPRPNFSGGPK 756
P G P+ + GP+
Sbjct: 476 PPTLGDPSDTAEHTPSGPR 494
>gnl|CDD|217814 pfam03957, Jun, Jun-like transcription factor.
Length = 236
Score = 36.9 bits (85), Expect = 0.029
Identities = 17/73 (23%), Positives = 21/73 (28%), Gaps = 2/73 (2%)
Query: 662 GGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPM 721
G GP GPG F+G P F P + + G P+
Sbjct: 147 GAGGPTAAAMAGPGGLFAGGLAPEPPVYANLSTFNPGA--TATAYGAMTEGFAAPPHPHA 204
Query: 722 GPPGGGPGPNFPP 734
PPG P
Sbjct: 205 NPPGAVGPPRLQA 217
Score = 30.4 bits (68), Expect = 3.6
Identities = 20/90 (22%), Positives = 23/90 (25%), Gaps = 5/90 (5%)
Query: 623 AMGGRPPGFPGPGGPMFPPGGPPNFP-----PNFGPGPPGPNFPGGPGPPMFPPGGPGPN 677
GG G +F G P P F PG + PP
Sbjct: 147 GAGGPTAAAMAGPGGLFAGGLAPEPPVYANLSTFNPGATATAYGAMTEGFAAPPHPHANP 206
Query: 678 FSGSGPPGMFPPGGPPNFGPNGPMGPPSGP 707
GPP + P P P S P
Sbjct: 207 PGAVGPPRLQALKDEPQTVPEAPSFGESPP 236
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 37.6 bits (87), Expect = 0.029
Identities = 49/217 (22%), Positives = 61/217 (28%), Gaps = 34/217 (15%)
Query: 641 PGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGP 700
P PNF G P+ P P PP PN G P N P G
Sbjct: 306 PTDDEFAVPNFNEGLDVPDNPQDPVPP--------PNEGKDGNPNEE------NLFPPGD 351
Query: 701 MGPPSGPSGPMGPPGGPNGPMGP-PGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPN 759
P + P PP P G P PP P PN P + + P
Sbjct: 352 DEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQ-EPNIPEDS---NKEVPE 407
Query: 760 FGPKGPRGPGPN-----FGPGPNNYGPPNNSGGPPGPNMRDNDDRRGGGGNYNDNSYDNE 814
P P N P G P N RD ++ N +++E
Sbjct: 408 DVPMEPEDDRDNNFNEPKKPENKGDGQNEPVIPKPLDNERDQSNKN--KQVNPGNRHNSE 465
Query: 815 DGNDWQGGDDNGWGDGGGQNYQNNERYNNDRNNWEEP 851
D G +N +N N+D E
Sbjct: 466 DRYTRPHGRNNE--------NRNYNNKNSDIPKHPER 494
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 35.0 bits (81), Expect = 0.029
Identities = 24/85 (28%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 653 PGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMG 712
PP P P PP+ P P + P PP+ P P GP G
Sbjct: 29 FSPPESAHPDDP-PPVGDPRPPVVDTPPPVSAVWVLP--PPSEPAAPPPDPEPPVPGPAG 85
Query: 713 PPGGPNGPMGPPGGGPGPNFPPGSG 737
PP P+ PP P PP
Sbjct: 86 PPS----PLAPPAPARKPPLPPPRP 106
Score = 31.2 bits (71), Expect = 0.72
Identities = 23/86 (26%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 632 PGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGG 691
P P PP PP PP P P + PP P
Sbjct: 32 PESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPS-----------EPAAPPPDPEPPV 80
Query: 692 PPNFGPNGPMGPPSGPSGPMGPPGGP 717
P GP P+ PP+ P PP P
Sbjct: 81 PGPAGPPSPLAPPAPARKPPLPPPRP 106
Score = 29.3 bits (66), Expect = 3.2
Identities = 19/76 (25%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 628 PPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMF 687
P P+ P P P P P P PP P +GPP
Sbjct: 33 ESAHPDDPPPVGDPRPPVVDTPP--PVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPL 90
Query: 688 PPGGPPNFGPNGPMGP 703
P P P P P
Sbjct: 91 APPAPARKPPLPPPRP 106
Score = 29.3 bits (66), Expect = 3.3
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGG--PNGPMGPPGGGPGPNFPPGSGG 738
S P PP G P P PP + + PP P P PGP PP
Sbjct: 34 SAHPDDPPPVGDP--RPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLA 91
Query: 739 P 739
P
Sbjct: 92 P 92
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 37.5 bits (87), Expect = 0.030
Identities = 30/119 (25%), Positives = 33/119 (27%), Gaps = 21/119 (17%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
AMG P GP F P + P PM P G PN
Sbjct: 392 GGAMGQPPYYGQGPQQ-QFNG-----QPLGWPRMSMMP-------TPMGPGGPLRPN--- 435
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGP 739
G M P N PP P M PP + P+ P P GG
Sbjct: 436 -GLAPMNAVRAPSRNAQNAAQKPPMQPV--MYPPNYQSLPLSQD--LPQPQSTASQGGQ 489
Score = 37.5 bits (87), Expect = 0.033
Identities = 26/124 (20%), Positives = 31/124 (25%), Gaps = 17/124 (13%)
Query: 661 PGGPGPPM---FPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGP 717
P PM P + G GP F G P + M P GP GGP
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFN-GQPLGWPRMSMMPTPMGP-------GGP 431
Query: 718 NGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPN 777
P G P N +P PN+ P +
Sbjct: 432 LRPNGLA-----PM-NAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTAS 485
Query: 778 NYGP 781
G
Sbjct: 486 QGGQ 489
Score = 36.7 bits (85), Expect = 0.060
Identities = 20/126 (15%), Positives = 23/126 (18%), Gaps = 14/126 (11%)
Query: 624 MGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGP 683
R P G G PP + G M P GPG
Sbjct: 380 PRMRQLPMGSPMGGAM--GQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPG-----GPL 432
Query: 684 PGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFG 743
P + PS + M PP P
Sbjct: 433 RPNGLA-------PMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTAS 485
Query: 744 PNGPRP 749
G
Sbjct: 486 QGGQNK 491
Score = 35.2 bits (81), Expect = 0.17
Identities = 24/101 (23%), Positives = 27/101 (26%), Gaps = 5/101 (4%)
Query: 696 GPNGPMGPPSGPSGPMGPPGGPNGPM----GPPGGGPGPNFPPGSGGPGNFGPNGPRPNF 751
PMG P G + P G P G P G G PNG P
Sbjct: 382 MRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMN 441
Query: 752 SGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPN 792
+ N + P P NY S P P
Sbjct: 442 AVRAPSRNAQNAAQKPPMQPV-MYPPNYQSLPLSQDLPQPQ 481
Score = 34.0 bits (78), Expect = 0.36
Identities = 21/76 (27%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 714 PGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFG 773
P PMG P G P +G P+ F+G P G P GP
Sbjct: 380 PRMRQLPMGSP-------MGGAMGQPPYYGQG-PQQQFNGQPLGWPRMSMMPTPMGPGGP 431
Query: 774 PGPNNYGPPNNSGGPP 789
PN P N P
Sbjct: 432 LRPNGLAPMNAVRAPS 447
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 36.5 bits (84), Expect = 0.034
Identities = 30/117 (25%), Positives = 33/117 (28%), Gaps = 12/117 (10%)
Query: 627 RPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGM 686
PP P P PP PP+ G P + PPGG
Sbjct: 52 CPPTTP------HPSSQPPPCPPSPGHPPQTNDTHEKDLALQPPPGGKKKEKKKKETEKP 105
Query: 687 FPPGGPPNFGPNGP------MGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSG 737
G P+ GP P PPGG G P GPGP G
Sbjct: 106 AQGGEKPDQGPEAKGEGEGHEPEDPPPEDTPPPPGGEGEVEGGPSPGPGPGPLDQEG 162
Score = 32.6 bits (74), Expect = 0.61
Identities = 32/116 (27%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 665 GPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFG----PNGPMGPPSGPSGPMGPPGGPNGP 720
G P PP P P S PP PG PP + + PP P G
Sbjct: 48 GYPFCPPTTPHP--SSQPPPCPPSPGHPPQTNDTHEKDLALQPP--PGGKKKEKKKKETE 103
Query: 721 MGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGP 776
GG P G P P P + P G +G PGP GP
Sbjct: 104 KPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTPPPPGGEGEVEGGPSPGPGPGPLD 159
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 37.0 bits (86), Expect = 0.035
Identities = 20/54 (37%), Positives = 21/54 (38%)
Query: 821 GGDDNGWGDGGGQNYQNNERYNNDRNNWEEPRRGRGGGKMRGGKRGRGRGGRGK 874
GG G GG R R RGRG G GG+ G G GG GK
Sbjct: 3 GGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56
Score = 33.2 bits (76), Expect = 0.47
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 825 NGWGDGGGQNYQNNERYNNDRNNWEEPRRGRGGGKMRGGKRGRGRGGRGKRG 876
G GG GRGGG RG RG G GGRG G
Sbjct: 1 GMGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGG--RGRGRGGGGGGRGGGG 50
Score = 30.9 bits (70), Expect = 2.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 853 RGRGGGKMRGGKRGRGRGGRGKRGM 877
G G G RGG G GRGG G+ G
Sbjct: 6 FGGGRGGGRGGGGGGGRGGGGRGGG 30
Score = 30.5 bits (69), Expect = 3.3
Identities = 15/48 (31%), Positives = 15/48 (31%)
Query: 699 GPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNG 746
G G G G GG G G G G GG G GP
Sbjct: 9 GRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56
Score = 30.5 bits (69), Expect = 3.7
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 690 GGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNF 742
GG G G G G G G GG G GGG G G G
Sbjct: 7 GGGRGGGRGGGGGGGRGGGGRGGGRGGG-RGRGRGGGGGGRGGGGGGGPGKVI 58
Score = 29.7 bits (67), Expect = 6.3
Identities = 18/54 (33%), Positives = 18/54 (33%)
Query: 711 MGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKG 764
MG G G GGG G G GG G R GG G G G
Sbjct: 2 MGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPG 55
Score = 29.7 bits (67), Expect = 6.6
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 672 GGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPN 731
GG G G G GG G G G G GG G G GGGPG
Sbjct: 3 GGGFGGGRGGGRGG-GGGGGRGGGGRGGGRGGG----RGRGRGGGGGGRGGGGGGGPGKV 57
Query: 732 F 732
Sbjct: 58 I 58
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 35.2 bits (81), Expect = 0.038
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 704 PSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPG 740
+G G G G + P P G GPGPN PP PG
Sbjct: 1 STGGDGTGGVSSGSSAPAPPAGPGPGPNAPPAPAAPG 37
Score = 33.2 bits (76), Expect = 0.17
Identities = 16/54 (29%), Positives = 18/54 (33%)
Query: 696 GPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRP 749
G +G G SG S P P G GP PP G G +G
Sbjct: 3 GGDGTGGVSSGSSAPAPPAGPGPGPNAPPAPAAPGVDSSAGSSGGEAGSSGSNS 56
Score = 32.1 bits (73), Expect = 0.42
Identities = 15/59 (25%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 670 PPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGP 728
GG G +G G P P GP P G G G G G
Sbjct: 1 STGGDG---TGGVSSGSSAPAPPAGPGPGPNAPPAPAAPGVDSSAGSSGGEAGSSGSNS 56
>gnl|CDD|177553 PHA03185, PHA03185, UL14 tegument protein; Provisional.
Length = 214
Score = 36.2 bits (83), Expect = 0.047
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 708 SGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRG 767
S P PG +GP P GP PG G P P PRP + + G G
Sbjct: 156 SAPAVRPGDLSGPGSRPTSGPVAGGLPGGGAPAPPTP--PRPGPTDPASESDCGRDSRDG 213
Score = 30.8 bits (69), Expect = 2.2
Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 589 RIPELEDTVSYIDGEEEWTPQGSGDVDLRGGYPPAMGGRPPG-------FPGPGGPMFPP 641
R+ E ED ++ D EE+ + L G PA G P + P P
Sbjct: 105 RLDEAEDRLA--DQEEQLEEAAANACLLSGDGDPADGWMSPEDSDLLIMWQLGSAPAVRP 162
Query: 642 GGP--PNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSG 682
G P P GP G G P PP P GP S S
Sbjct: 163 GDLSGPGSRPTSGPVAGGLPGGGAPAPPTPPRPGPTDPASESD 205
Score = 30.8 bits (69), Expect = 2.5
Identities = 22/73 (30%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 686 MFPPGGPPNFGPNGPMGPPSGP-SGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGP 744
M+ G P P GP S P SGP+ G PGGG PP PG P
Sbjct: 151 MWQLGSAPAVRPGDLSGPGSRPTSGPV--------AGGLPGGGAPA--PPTPPRPGPTDP 200
Query: 745 NGPRPNFSGGPKG 757
G
Sbjct: 201 ASESDCGRDSRDG 213
>gnl|CDD|227538 COG5213, FIP1, Polyadenylation factor I complex, subunit FIP1 [RNA
processing and modification].
Length = 266
Score = 36.6 bits (84), Expect = 0.047
Identities = 25/76 (32%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 721 MGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYG 780
G G N +G GN G RPN GPK P+FG G G F P G
Sbjct: 195 DDDGDGPNGANGSNDNGNMGN--GMGGRPNGPAGPKEPSFGGLGMFGDFEPF-PYEEM-G 250
Query: 781 PPNNSGGPPGPNMRDN 796
P N G G
Sbjct: 251 PGMNQGPNDGGKQNSK 266
Score = 31.9 bits (72), Expect = 1.4
Identities = 27/90 (30%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 679 SGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPP--GGPNGPMGPPGGGPGPNFPPGS 736
G G +F GP+G G G MG GP P
Sbjct: 173 GLLQQQGELNSGNDRDFNEGKIDDDGDGPNGANGSNDNGNMGNGMGGRPNGPAGPKEPSF 232
Query: 737 GGPGNFGPNGPRPNFSGGP---KGPNFGPK 763
GG G FG P P GP +GPN G K
Sbjct: 233 GGLGMFGDFEPFPYEEMGPGMNQGPNDGGK 262
Score = 30.4 bits (68), Expect = 3.3
Identities = 15/53 (28%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 641 PGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPP 693
P G N G P GP P P G F G P + GP
Sbjct: 201 PNGANGSNDNGNMGNGMGGRPNGPAGPKEPSFGGLGMF-GDFEPFPYEEMGPG 252
Score = 30.4 bits (68), Expect = 3.6
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 747 PRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGG----PPGPNMRDNDDRRGG 802
SG + N G G GPN G N+ G N G P + G
Sbjct: 178 QGELNSGNDRDFNEGKIDDDGDGPNGANGSNDNGNMGNGMGGRPNGPAGPKEPSFGGLGM 237
Query: 803 GGNYNDNSYDNEDGNDWQGGDDNG 826
G++ Y+ QG +D G
Sbjct: 238 FGDFEPFPYEEMGPGMNQGPNDGG 261
Score = 30.0 bits (67), Expect = 5.3
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 625 GGRPPGFPGP---GGPMFPPGGPPNFP-----PNFGPGPPGPNFPGGPGPPMFPPGGPGP 676
G P G G G GG PN P P+FG +F P M P GP
Sbjct: 198 GDGPNGANGSNDNGNMGNGMGGRPNGPAGPKEPSFGGLGMFGDFEPFPYEEMGPGMNQGP 257
Query: 677 NFSGSGPP 684
N G
Sbjct: 258 NDGGKQNS 265
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 37.0 bits (85), Expect = 0.051
Identities = 37/154 (24%), Positives = 43/154 (27%), Gaps = 24/154 (15%)
Query: 661 PGGPGPPMFPPGGPGPNFSGSGPPG------MFPPGGPPNFGPNGPMGPPSGPSGPMGP- 713
P GP PP PG G GG P G +G GP+ P
Sbjct: 511 PEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPS 570
Query: 714 --------PGGPNGPMGP--PGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNF--G 761
P P P P P P P + P + P PK P
Sbjct: 571 KIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTR-PKSPKLPELLDIPKSPKRPES 629
Query: 762 PKGPRGPGPNFGPG----PNNYGPPNNSGGPPGP 791
PK P+ P P P P + P P
Sbjct: 630 PKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSP 663
Score = 30.8 bits (69), Expect = 4.0
Identities = 29/112 (25%), Positives = 33/112 (29%), Gaps = 19/112 (16%)
Query: 702 GPPSGPSGPMGPPGGP------NGPMGPPGGGPGP--NFPPGSGGPGNFGPN-GPR---- 748
PP GP PP P G P PG G G GP
Sbjct: 509 EPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHK 568
Query: 749 ----PNFSGGPKGPNFGPKGPRGP-GPNFGPGPNNYGPPNNSGGPPGPNMRD 795
P S P+ P PK P+ P P P + P P P + D
Sbjct: 569 PSKIPTLSKKPEFPK-DPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLD 619
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 36.4 bits (84), Expect = 0.076
Identities = 23/84 (27%), Positives = 24/84 (28%), Gaps = 1/84 (1%)
Query: 657 GPNFPGGP-GPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPG 715
G N PG PP G P S P PG P P P+ P PP
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA 238
Query: 716 GPNGPMGPPGGGPGPNFPPGSGGP 739
P PP P P
Sbjct: 239 SIPAPPIPPVIQYVAPPPVPPPQP 262
Score = 35.3 bits (81), Expect = 0.15
Identities = 37/147 (25%), Positives = 50/147 (34%), Gaps = 18/147 (12%)
Query: 730 PNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPP 789
P S G G G GPR + N G + + P N NN
Sbjct: 442 DQQRPVSRGRGR-GQRGPRSQPQNQRRQQNRGRQSSQPP-----RQQQNRSNQNNQRQSQ 495
Query: 790 GPNMRDNDDRRGGGGNYNDNSYDNEDGNDWQGGDDNGWGDGGGQNYQNNERYNNDRNNWE 849
GPN R GG N +Y + G G G N + R+ +
Sbjct: 496 GPN---QGPRGQGGYNLRPRTYQPQR---------YGGGQGRRWNPNPYRQSGQGRSQQQ 543
Query: 850 EPRRGRGGGKMRGGKRGRGRGGRGKRG 876
+P+ G + R GRG+GGRG +
Sbjct: 544 QPQPEARGNQSRTPGPGRGQGGRGNQN 570
Score = 34.1 bits (78), Expect = 0.31
Identities = 29/189 (15%), Positives = 43/189 (22%), Gaps = 40/189 (21%)
Query: 685 GMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGP 744
G+ G F P P G G + P G + P
Sbjct: 427 GLNARGQSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRR-------QQNRGRQSSQPP 479
Query: 745 NGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDNDDRRGGGG 804
+ + + + GP + P Y P GG N R+ G G
Sbjct: 480 RQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRRW-NPNPYRQSGQG 538
Query: 805 NYNDNSYDNEDGNDWQGGDDNGWGDGGGQNYQNNERYNNDRNNWEEPRRGRGGGKMRGGK 864
E + R G G+ +GG+
Sbjct: 539 RSQQQQPQPEARGNQS--------------------------------RTPGPGRGQGGR 566
Query: 865 RGRGRGGRG 873
+ R R
Sbjct: 567 GNQNRNQRS 575
Score = 30.3 bits (68), Expect = 6.1
Identities = 21/121 (17%), Positives = 25/121 (20%), Gaps = 11/121 (9%)
Query: 683 PPGMFPPGGPPNFGPNGPMGPP-SGPSGPMGPPGGPNGPMGPPGGGPGPNFPP------- 734
N G P GP P G G N P
Sbjct: 459 RSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQR 518
Query: 735 ---GSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGP 791
G G N P + P +G + P G G G N +
Sbjct: 519 YGGGQGRRWNPNPYRQSGQGRSQQQQPQPEARGNQSRTPGPGRGQGGRGNQNRNQRSGNN 578
Query: 792 N 792
Sbjct: 579 T 579
Score = 29.5 bits (66), Expect = 8.2
Identities = 29/109 (26%), Positives = 31/109 (28%), Gaps = 19/109 (17%)
Query: 625 GGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPP 684
GGR PG P PP P PP P + G P
Sbjct: 176 GGRGGNIPGAIQPP-PPSSLPGLPPGSSSLAPSASSTPG----------------NRLPR 218
Query: 685 GMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFP 733
F P P P P PP+ P PP PP P P P
Sbjct: 219 VSFNPFLPGP-SPAQPSAPPASIPAPPIPPVIQY-VAPPPVPPPQPIIP 265
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 36.1 bits (83), Expect = 0.087
Identities = 24/99 (24%), Positives = 27/99 (27%), Gaps = 5/99 (5%)
Query: 665 GPPMFPPGGPGPNFSGSGP--PGMFPPGGPPN-FGPNGPMGPPSGPSGP--MGPPGGPNG 719
G PP G G P P P GP + F P P P + P P
Sbjct: 170 GTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTS 229
Query: 720 PMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGP 758
P P G P P GG + P
Sbjct: 230 PPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAP 268
Score = 34.9 bits (80), Expect = 0.18
Identities = 20/103 (19%), Positives = 25/103 (24%)
Query: 689 PGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPR 748
P G F G + P G P P+ P GP F P + P P
Sbjct: 160 PLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPE 219
Query: 749 PNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGP 791
+ P P + PP P
Sbjct: 220 TTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTP 262
Score = 33.8 bits (77), Expect = 0.36
Identities = 28/106 (26%), Positives = 33/106 (31%), Gaps = 13/106 (12%)
Query: 639 FPPGGPPNFPPNFGPGPPGPNFPGGP------GPP-MFPPGGPGPNFSGSGPPGMFPPGG 691
FP G PP G P P GP +F P P P + P P
Sbjct: 166 FPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTP--- 222
Query: 692 PPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSG 737
P+ + P PS + P G G P P PG G
Sbjct: 223 TPSTTTSPPSTTIPAPSTTIAAPQA--GTTPEAEGTPAPP-TPGGG 265
Score = 33.0 bits (75), Expect = 0.74
Identities = 13/63 (20%), Positives = 15/63 (23%)
Query: 620 YPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFS 679
+ PA P P + P P P G G P P
Sbjct: 203 FVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTP 262
Query: 680 GSG 682
G G
Sbjct: 263 GGG 265
Score = 32.6 bits (74), Expect = 0.94
Identities = 29/130 (22%), Positives = 32/130 (24%), Gaps = 8/130 (6%)
Query: 662 GGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPS-GPM-----GPPG 715
G +FP G F G P G G P P S P GP P
Sbjct: 152 GATNASLFPLGLAA--FPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPR 209
Query: 716 GPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPG 775
P P P+ P+ G G P PG P
Sbjct: 210 PTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPP 269
Query: 776 PNNYGPPNNS 785
N P S
Sbjct: 270 ANATPAPEAS 279
Score = 30.3 bits (68), Expect = 4.3
Identities = 14/75 (18%), Positives = 17/75 (22%), Gaps = 4/75 (5%)
Query: 634 PGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPP 693
P P P P P P P P P + P PP
Sbjct: 205 PATPRPTPRTTA--SPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTP--APP 260
Query: 694 NFGPNGPMGPPSGPS 708
G + P+
Sbjct: 261 TPGGGEAPPANATPA 275
>gnl|CDD|218232 pfam04731, Caudal_act, Caudal like protein activation region. This
family consists of the amino termini of proteins
belonging to the caudal-related homeobox protein family.
This region is thought to mediate transcription
activation. The level of activation caused by mouse Cdx2
is affected by phosphorylation at serine 60 via the
mitogen-activated protein kinase pathway. Caudal family
proteins are involved in the transcriptional regulation
of multiple genes expressed in the intestinal
epithelium, and are important in differentiation and
maintenance of the intestinal epithelial lining. Caudal
proteins always have a homeobox DNA binding domain
(pfam00046).
Length = 135
Score = 34.0 bits (78), Expect = 0.12
Identities = 31/123 (25%), Positives = 41/123 (33%), Gaps = 15/123 (12%)
Query: 636 GPMFPPGGPPNFPPNFGPGPPGPNFPG---GPGPPMFPPGGPGPNFSGSGPP-----GMF 687
G + G NF P P++ G PG + P G P + P +
Sbjct: 4 GSVRHSGLNLG-AQNFVSAPQYPDYGGYHHVPGMNLDPHGQPSGAWGSPYGPPREDWSAY 62
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGP 747
PG P +G G M P+ PPG GPG P SG P+
Sbjct: 63 GPGPGP------SATAATGSPGQMAYSPPDYSPVHPPGPGPGLLQPADSGSVEQLSPSAQ 116
Query: 748 RPN 750
R +
Sbjct: 117 RRS 119
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 35.6 bits (82), Expect = 0.14
Identities = 32/179 (17%), Positives = 38/179 (21%), Gaps = 11/179 (6%)
Query: 609 QGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPM 668
Q G + P P P PP P
Sbjct: 367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR 426
Query: 669 FPPGGPGP---NFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPG 725
P S GP G P P P P + P+ P
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA 486
Query: 726 GGPGP---NFPPGSGGPGNF---GPNGPRPNFSGGPK--GPNFGPKGPRGPGPNFGPGP 776
P P + PP P F P P +G P+ P P P
Sbjct: 487 AAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAP 545
Score = 33.7 bits (77), Expect = 0.47
Identities = 28/171 (16%), Positives = 33/171 (19%), Gaps = 9/171 (5%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P GG P+ P P P P P P
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGG-----PNGPMGPPGGGPGPNFPPG 735
P GP G P+ P P GP
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484
Query: 736 SGGPGNFGPNGPRPNFSGGPKGPNFGP----KGPRGPGPNFGPGPNNYGPP 782
+ P P P+ + P P G P P P
Sbjct: 485 PAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPD 535
Score = 32.5 bits (74), Expect = 1.1
Identities = 20/105 (19%), Positives = 26/105 (24%), Gaps = 4/105 (3%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P A G RP P P + P PP P P P P +G
Sbjct: 464 PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP-PPWEELP--PEFASPAPAQPDAAPAG 520
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPG 725
+ P P+ + P P+ P
Sbjct: 521 WVAESIPDPATADPDDA-FETLAPAPAAAPAPRAAAATEPVVAPR 564
Score = 31.8 bits (72), Expect = 1.7
Identities = 34/163 (20%), Positives = 36/163 (22%), Gaps = 22/163 (13%)
Query: 627 RPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGM 686
RP G GP P P P P PP P P
Sbjct: 364 RPGQSGGGAGPA-TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAA------AAAA 416
Query: 687 FPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNG 746
P P + PGG P P P P G
Sbjct: 417 RAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP--------AAAG 468
Query: 747 PRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPP 789
PRP P P P P + PP PP
Sbjct: 469 PRPV-------AAAAAAAPARAAPAAAPAPADDDPPPWEELPP 504
Score = 31.8 bits (72), Expect = 1.8
Identities = 21/124 (16%), Positives = 27/124 (21%), Gaps = 12/124 (9%)
Query: 669 FPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGP 728
F PG G G+GP P P + P
Sbjct: 363 FRPGQSG---GGAGPA-------TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAA 412
Query: 729 GPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGP 788
+ P P + + GP G P P P P +G
Sbjct: 413 AAAARAVAAAPARRSP--APEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPR 470
Query: 789 PGPN 792
P
Sbjct: 471 PVAA 474
>gnl|CDD|226808 COG4371, COG4371, Predicted membrane protein [Function unknown].
Length = 334
Score = 35.3 bits (81), Expect = 0.14
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 699 GPMGPPSGPSG---PMGPPGGPNGPMGPPGGG-PGPNFPPGSGGPGNFG 743
G PSG S GP GG G GGG P PG GG G FG
Sbjct: 56 GSFRAPSGYSRGYSGGGPSGGGYSGGGYSGGGFGFPFIIPGGGGGGGFG 104
>gnl|CDD|222274 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat region. This
family includes a number of FG repeats that are found in
nucleoporin proteins. This family includes the yeast
nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Length = 106
Score = 32.8 bits (75), Expect = 0.14
Identities = 20/105 (19%), Positives = 25/105 (23%), Gaps = 9/105 (8%)
Query: 648 PPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMF--------PPGGPPNFGPNG 699
G F P G N + + G+F P G FG
Sbjct: 2 SSTTAGASSGGLFGSAPATGGGLFGQNAANTTPTSGGGLFGSSSSQATQPSGGGLFGSAA 61
Query: 700 PMGPPSGPSGPMGPPGGPNGPMGPPGG-GPGPNFPPGSGGPGNFG 743
+ G G G G P + G G FG
Sbjct: 62 QTSATTTGGGLFGSTTATTTTATGGGLFGNATAAQPATTGGGLFG 106
Score = 29.4 bits (66), Expect = 2.8
Identities = 23/104 (22%), Positives = 29/104 (27%), Gaps = 6/104 (5%)
Query: 676 PNFSGSGPPGMF---PPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGG-GPGPN 731
+G+ G+F P G FG N P+ G G G G
Sbjct: 3 STTAGASSGGLFGSAPATGGGLFGQNAANTTPTSGGGLFGSSSSQATQPSGGGLFGSAAQ 62
Query: 732 FPPGSGGPGNFG--PNGPRPNFSGGPKGPNFGPKGPRGPGPNFG 773
+ G G FG GG G + G FG
Sbjct: 63 TSATTTGGGLFGSTTATTTTATGGGLFGNATAAQPATTGGGLFG 106
Score = 28.6 bits (64), Expect = 4.7
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 2/91 (2%)
Query: 632 PGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGG 691
P GG +F P + G + G + + G+F G
Sbjct: 18 PATGGGLFGQNAANTTPTSGGGLFGSSSSQATQPSGGGLFGSAAQTSATTTGGGLF--GS 75
Query: 692 PPNFGPNGPMGPPSGPSGPMGPPGGPNGPMG 722
G G + P G G
Sbjct: 76 TTATTTTATGGGLFGNATAAQPATTGGGLFG 106
Score = 28.2 bits (63), Expect = 5.8
Identities = 23/106 (21%), Positives = 26/106 (24%), Gaps = 6/106 (5%)
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGG-GPGPNFPPGSGGPGNFG--P 744
G + G G P+ G G P G G + G G FG
Sbjct: 4 TTAGASSGGLFG--SAPATGGGLFGQNAANTTPTSGGGLFGSSSSQATQPSGGGLFGSAA 61
Query: 745 NGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPG 790
GG G G FG P GG G
Sbjct: 62 QTSATTTGGGLFGSTTATTTTATGGGLFG-NATAAQPATTGGGLFG 106
>gnl|CDD|185489 PTZ00160, PTZ00160, 60S ribosomal protein L27a; Provisional.
Length = 147
Score = 33.5 bits (77), Expect = 0.17
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 20 GGHHHHHHPRGYHGQQFHHRPNFNKNFHTPF------RPFHKNPNQIMDP 63
G H H RG G Q HHR NF+K +H + R FH N+ P
Sbjct: 23 GKHRKHPGGRGNAGGQHHHRINFDK-YHPGYFGKVGMRHFHLKKNKYYCP 71
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 35.1 bits (81), Expect = 0.17
Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 5/124 (4%)
Query: 685 GMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGG---GPGPNFPPGSGGPGN 741
++PP + G + P P GP + P P PGP P G G
Sbjct: 53 DLYPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGA 112
Query: 742 FGPNGPRPNFSGGP--KGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDNDDR 799
P + S + P G + + + +++
Sbjct: 113 SSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKV 172
Query: 800 RGGG 803
G
Sbjct: 173 YPKG 176
Score = 32.4 bits (74), Expect = 1.2
Identities = 25/126 (19%), Positives = 30/126 (23%), Gaps = 6/126 (4%)
Query: 644 PPNFPPNFGPGPPGPNFPGGPGPPMFPPGGP-GPNFSGSGPPGMFPPGG-PPNFGPNGPM 701
P G G P PP P P+ + PPG P G
Sbjct: 55 YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRE--LPPGPTPVPPGGFRGA 112
Query: 702 GPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFG 761
P G + P S + RP S K N G
Sbjct: 113 SSP--RLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGG 170
Query: 762 PKGPRG 767
P+G
Sbjct: 171 KVYPKG 176
Score = 32.4 bits (74), Expect = 1.3
Identities = 29/147 (19%), Positives = 35/147 (23%), Gaps = 14/147 (9%)
Query: 609 QGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFP--PGGPPNFPPNFGPGPPGPNFPGGPGP 666
+ D YPP G G P P GP P P PGP
Sbjct: 44 SEATSEDDDDLYPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELP--PGP 101
Query: 667 PMFPPGGPGPNFSGSG------PPGMFPPGGPPNFGPNGPMGPPSGPSG--PMG--PPGG 716
PPGG S P ++ P P G S PP
Sbjct: 102 TPVPPGGFRGASSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPS 161
Query: 717 PNGPMGPPGGGPGPNFPPGSGGPGNFG 743
+ + G F +
Sbjct: 162 ESLKVKNGGKVYPKGFSKHKTHKRSEF 188
Score = 32.0 bits (73), Expect = 1.7
Identities = 23/117 (19%), Positives = 27/117 (23%), Gaps = 3/117 (2%)
Query: 627 RPPGFPGPGG--PMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPP 684
RPP P P P PP P PPG P + + P
Sbjct: 76 RPPRGPEQTLDKPDSLPASRE-LPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFPV 134
Query: 685 GMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGN 741
+ P G + P NG P G S G
Sbjct: 135 ILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFSGL 191
>gnl|CDD|218108 pfam04487, CITED, CITED. CITED, CBP/p300-interacting
transactivator with ED-rich tail, are characterized by a
conserved 32-amino acid sequence at the C-terminus.
CITED proteins do not bind DNA directly and are thought
to function as transcriptional co-activators.
Length = 206
Score = 34.1 bits (78), Expect = 0.20
Identities = 29/102 (28%), Positives = 31/102 (30%), Gaps = 11/102 (10%)
Query: 625 GGRP-PGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMF------PPGGPGPN 677
GRP GP G P P F P F PGP +
Sbjct: 56 SGRPRSAMSGPMGGGHPHQSMPA-YMMFNPSSKPQPFMLVPGPQLMASMQLQKLNTQYQG 114
Query: 678 FSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNG 719
+G P G GGP F P G PP P P PN
Sbjct: 115 HAG-APAGHPGGGGPQQFRP-GAGQPPGMQHMP-APALPPNV 153
Score = 33.3 bits (76), Expect = 0.32
Identities = 29/145 (20%), Positives = 33/145 (22%), Gaps = 11/145 (7%)
Query: 658 PNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGP 717
G P GP + G +P GG P SGP G P
Sbjct: 19 KGARMGMNSLAAPNHGPHDLRALMGTLLHYPGGGMD--ASGRPRSAMSGPMGGGHPHQSM 76
Query: 718 NGPMGPPGGGPGPNFPPGSGGPGNFGP-----NGPRPNFSGGPKGPNFGPKGPRGPGPNF 772
M F G N +G P G P G
Sbjct: 77 PAYMMFNPSSKPQPFMLVPGPQLMASMQLQKLNTQYQGHAGAPAG---HPGGGGPQQFRP 133
Query: 773 GPGPNNYGPPNNSGGPPGPNMRDND 797
G G PN+ D D
Sbjct: 134 GAGQPPGMQH-MPAPALPPNVIDTD 157
Score = 31.0 bits (70), Expect = 1.7
Identities = 25/94 (26%), Positives = 25/94 (26%), Gaps = 19/94 (20%)
Query: 617 RGGYPPAMGGRPPGFPGPGGPMF-PPGGPPNFPPNFGP------------------GPPG 657
R MGG P P MF P P F GP
Sbjct: 60 RSAMSGPMGGGHPHQSMPAYMMFNPSSKPQPFMLVPGPQLMASMQLQKLNTQYQGHAGAP 119
Query: 658 PNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGG 691
PGG GP F PG P P PP
Sbjct: 120 AGHPGGGGPQQFRPGAGQPPGMQHMPAPALPPNV 153
Score = 29.9 bits (67), Expect = 4.3
Identities = 28/133 (21%), Positives = 33/133 (24%), Gaps = 12/133 (9%)
Query: 624 MGGRPPGFPGPGGPMFP-------PGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGP 676
MG P G + P GG P P
Sbjct: 23 MGMNSLAAPNHGPHDLRALMGTLLHYPGGGMDASGRPRSAMSGPMGGGHPHQSMP--AYM 80
Query: 677 NFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPS-GPMGPPGGPNGPMGPPGGGPGPNFPPG 735
F+ S P F P + + + G G P G G GP PG PPG
Sbjct: 81 MFNPSSKPQPFMLVPGPQLMASMQLQKLNTQYQGHAGAPAGHPGGGGPQQFRPGAGQPPG 140
Query: 736 --SGGPGNFGPNG 746
PN
Sbjct: 141 MQHMPAPALPPNV 153
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 34.7 bits (80), Expect = 0.24
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 6/72 (8%)
Query: 662 GGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMG----PPSGPSGPMGPPGGP 717
G P PP G P P + PP PP P P P P P PP
Sbjct: 380 GAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAA--PARPAAARPAPAPAPPAAAAPPARS 437
Query: 718 NGPMGPPGGGPG 729
P G
Sbjct: 438 ADPAAAASAGDR 449
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 34.8 bits (80), Expect = 0.25
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 652 GPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGP 683
G G PG PGG M GP + SGP
Sbjct: 617 GGGMPG-GMPGGMPGGMPGGAGPAGAGASSGP 647
Score = 34.4 bits (79), Expect = 0.30
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 706 GPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGP 739
G P G PGG G M P G GP S GP
Sbjct: 617 GGGMPGGMPGGMPGGM-PGGAGPAG--AGASSGP 647
Score = 30.9 bits (70), Expect = 3.3
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 672 GGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPS 708
G PG G PG P G P GP G SGP+
Sbjct: 619 GMPG------GMPGGMPGGMPGGAGP-AGAGASSGPT 648
Score = 30.1 bits (68), Expect = 6.2
Identities = 10/31 (32%), Positives = 10/31 (32%)
Query: 680 GSGPPGMFPPGGPPNFGPNGPMGPPSGPSGP 710
G G PG P G P SGP
Sbjct: 617 GGGMPGGMPGGMPGGMPGGAGPAGAGASSGP 647
Score = 29.8 bits (67), Expect = 9.1
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 620 YPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGP 655
Y A GG P G PG P G P GP
Sbjct: 613 YQAAGGGMPGGMPGGMPGGMPGGAGPA-GAGASSGP 647
Score = 29.4 bits (66), Expect = 9.4
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 623 AMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGP 658
A GG PG PGG P G P P GP
Sbjct: 615 AAGGGMPG-GMPGG--MPGGMPGGAGPAGAGASSGP 647
>gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4.
The C-terminal domain of the transcription elongation
factor protein Spt5 is necessary for binding to Spt4 to
form the functional complex that regulates early
transcription elongation by RNA polymerase II. The
complex may be involved in pre-mRNA processing through
its association with mRNA capping enzymes. This CTD
domain carries a regular nonapeptide repeat that can be
present in up to 18 copies, as in S. pombe. The repeat
has a characteristic TPA motif.
Length = 121
Score = 32.5 bits (74), Expect = 0.26
Identities = 32/130 (24%), Positives = 37/130 (28%), Gaps = 14/130 (10%)
Query: 625 GGRPPGFPGPGG--PMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSG 682
GGR P + G P + P G P G P G P + G+G
Sbjct: 1 GGRTPAWGASGSKTPAWGSRTPGT---AAGGAPTARGGSGSRTPAWGGAGSRTPAWGGAG 57
Query: 683 PPGMFPPGGPPNFGPN---GPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGP 739
P G P +G G S PGG G P G G G P
Sbjct: 58 PTG----SRTPAWGGASAWGNKSSEGSASSWAAGPGGAYGAPTP--GYGGTPSAYGPATP 111
Query: 740 GNFGPNGPRP 749
G G
Sbjct: 112 GGGAMAGSAS 121
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 34.1 bits (78), Expect = 0.27
Identities = 27/81 (33%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 703 PPSGPSGPMGPPGGPN-GPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFG 761
P P+ P P P P PPG G P PPG GP PR G P G F
Sbjct: 16 SPPRPTPPRSPDASPEETPPSPPGPGAEP--PPGRAA----GPAAPRRRPRGCPAGVTFS 69
Query: 762 PKGPRGPGPNFGPGPNNYGPP 782
P P P PP
Sbjct: 70 SSAPPRPPLGLDDAPAATPPP 90
Score = 31.0 bits (70), Expect = 2.7
Identities = 29/86 (33%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 653 PGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSG-PM 711
P PP P P PP P P + PPG P PP GP P P G P
Sbjct: 9 PSPPRRPSPPRPTPPRSPDA--SPEETPPSPPG--PGAEPPPGRAAGPAAPRRRPRGCPA 64
Query: 712 G-------PPGGPNGPMGPPGGGPGP 730
G PP P G P P P
Sbjct: 65 GVTFSSSAPPRPPLGLDDAPAATPPP 90
Score = 30.6 bits (69), Expect = 3.1
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 627 RPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSG-PPG 685
R P P P P P P PP PPG PG PP G P G P G
Sbjct: 13 RRPSPPRPTPPRSPDASPEETPP----SPPG---PGAEPPPGRAAGPAAPRRRPRGCPAG 65
Query: 686 MFPPGGPPNFGPNGPMGPPSGPSGPMGPPG 715
+ P P G P+ P+
Sbjct: 66 VTFSSSAPPRPPLGLDDAPAATPPPLDWTE 95
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 34.3 bits (78), Expect = 0.33
Identities = 20/75 (26%), Positives = 22/75 (29%), Gaps = 8/75 (10%)
Query: 681 SGPPGMFPPGGPPNFGP-----NGPMGPPS-GPSGPMGPPGGPNGPMGPPGGGPGPNFPP 734
S P P P GP N P P P+ P P P G G G PP
Sbjct: 615 SDPSSRSPGRKPAKLGPSLVITNVPSDPTKVTPTQPSNLPQVPTS--GQGNGTAGGEQPP 672
Query: 735 GSGGPGNFGPNGPRP 749
+ G G
Sbjct: 673 SAPNGTGNGEGGKDL 687
>gnl|CDD|197548 smart00157, PRP, Major prion protein. The prion protein is a major
component of scrapie-associated fibrils in
Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler
syndrome and bovine spongiform encephalopathy.
Length = 218
Score = 33.3 bits (76), Expect = 0.37
Identities = 28/77 (36%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 670 PPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPG 729
P G G N GS PG PGG G G P G P GG G P GGG G
Sbjct: 4 PKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGWGQPHGGGW-GQPHGGGWGQ--PHGGGWG 60
Query: 730 PNFPPGSGGPGNFGPNG 746
P G G G +
Sbjct: 61 Q--PHGGGWGQGGGTHN 75
Score = 30.2 bits (68), Expect = 3.5
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 764 GPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDNDDRRGGGGNYNDNSYDNEDGNDWQGGD 823
G R PG PG N Y P G P GG G + + G W
Sbjct: 14 GSRYPGQG-SPGGNRYPPQGGGWGQPH---------GGGWGQPHGGGWGQPHGGGWGQPH 63
Query: 824 DNGWGDGGGQNYQNNE 839
GWG GGG + Q N+
Sbjct: 64 GGGWGQGGGTHNQWNK 79
Score = 29.8 bits (67), Expect = 4.7
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPN 677
GG G R PG PGG +PP G P+ G G GG G P GG G
Sbjct: 7 GGGWNTGGSRYPGQGSPGGNRYPPQGGGWGQPHGGGW--GQPHGGGWGQP--HGGGWGQP 62
Query: 678 FSGSG 682
G
Sbjct: 63 HGGGW 67
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 33.7 bits (77), Expect = 0.50
Identities = 26/99 (26%), Positives = 27/99 (27%), Gaps = 18/99 (18%)
Query: 710 PMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNG----PRPNFSGGPKG----PNF- 760
P P G P PGG P G + P PN G NF
Sbjct: 365 PATPTRGVESPARSPGGSPRTTNRSGPRNVASVSPMTSVKKIDPNMKPGAASEGVLANFF 424
Query: 761 ---------GPKGPRGPGPNFGPGPNNYGPPNNSGGPPG 790
P P G G G G N G SG P
Sbjct: 425 NSLLSKKTGSPGSPGGGGSPAGTGTNTQGTAKKSGQKPV 463
Score = 31.0 bits (70), Expect = 2.8
Identities = 20/86 (23%), Positives = 20/86 (23%), Gaps = 22/86 (25%)
Query: 666 PPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPM-------------- 711
P G P S G P GP N PM M
Sbjct: 365 PATPTRGVESPARSPGGSPRTTNRSGPRNVASVSPMTSVKKIDPNMKPGAASEGVLANFF 424
Query: 712 --------GPPGGPNGPMGPPGGGPG 729
G PG P G P G G
Sbjct: 425 NSLLSKKTGSPGSPGGGGSPAGTGTN 450
Score = 29.8 bits (67), Expect = 6.3
Identities = 20/97 (20%), Positives = 21/97 (21%), Gaps = 12/97 (12%)
Query: 641 PGGPPNFPPNFGPGPPGPNFPGGPGP--PMFPPGGPGPNFSGSGPPGMFPPGGPPNF--- 695
P P P + P PM PN G NF
Sbjct: 371 GVESPARSPGGSPRTTNRSGPRNVASVSPMTSVKKIDPNMKPGAAS----EGVLANFFNS 426
Query: 696 ---GPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPG 729
G G P G P G G G P
Sbjct: 427 LLSKKTGSPGSPGGGGSPAGTGTNTQGTAKKSGQKPV 463
>gnl|CDD|223010 PHA03215, PHA03215, nuclear protein UL24; Provisional.
Length = 262
Score = 32.9 bits (75), Expect = 0.51
Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 8/49 (16%)
Query: 625 GGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGG 673
GR G P P GG GPP P P P P P
Sbjct: 198 RGRRRGARRPRSRRRPRGG--------AAGPPVPAEPAAPERPPADPTP 238
Score = 29.9 bits (67), Expect = 4.9
Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 617 RGGYPPAMGGRPPGFP--GPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPG 665
R G G R P GG PP P P P P G G
Sbjct: 197 RRGRR--RGARRPRSRRRPRGGAAGPPVPAEPAAPERPPADPTPTSARGGG 245
>gnl|CDD|146151 pfam03363, Herpes_LP, Herpesvirus leader protein.
Length = 177
Score = 32.6 bits (74), Expect = 0.56
Identities = 34/102 (33%), Positives = 38/102 (37%), Gaps = 28/102 (27%)
Query: 691 GPPNFGPNGPMG-------PPSGPSG-PMGP----------------PGGPNGPMGPPGG 726
GPP GP GP G PS G P GP G P+GP G P
Sbjct: 14 GPPGLGPEGPFGQLLRRRRSPSPTGGDPEGPRRVRRRVLLEEEEEVVSGPPSGPRGDPSE 73
Query: 727 GPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGP 768
PGP+ P GP GP GP + P+ P GP
Sbjct: 74 APGPSRP----GPPGLGPEGPFGQLLRRRRSPSPTGGDPEGP 111
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 33.1 bits (75), Expect = 0.57
Identities = 32/119 (26%), Positives = 34/119 (28%), Gaps = 22/119 (18%)
Query: 628 PPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMF 687
PPG G + PP P PN P P PG PG P +
Sbjct: 9 PPGLAGLVANV-PPAAAPTPQPNPVIQPQAPVQPGQPGAPQQ----------------LA 51
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNG 746
P P P M P P P P PP G P F PNG
Sbjct: 52 IPTQQPQPVPTSAMTPHVVQQAPAQP-----APAAPPAAGAALPEALEVPPPPAFTPNG 105
>gnl|CDD|240255 PTZ00070, PTZ00070, 40S ribosomal protein S2; Provisional.
Length = 257
Score = 32.7 bits (75), Expect = 0.59
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 849 EEPRRGRGGGKMRGGKRGRGRGGRGKRGM 877
GRG G+ G RGRGRG
Sbjct: 4 ARGGEGRGFGRRGRGGRGRGRGRGRGGEG 32
>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5). This
family consists of apoptosis inhibitory protein 5 (API5)
sequences from several organisms. Apoptosis or
programmed cell death is a physiological form of cell
death that occurs in embryonic development and organ
formation. It is characterized by biochemical and
morphological changes such as DNA fragmentation and cell
volume shrinkage. API5 is an anti apoptosis gene located
in human chromosome 11, whose expression prevents the
programmed cell death that occurs upon the deprivation
of growth factors.
Length = 543
Score = 33.5 bits (76), Expect = 0.60
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 822 GDDNGWGDGGGQNYQNNERYNNDR----NNWEEPRRGRGGGKMRGGKRGRGRGGRGKRG 876
G++ N Q +Y N + + GRG + RG G GRG RG
Sbjct: 485 GNNVPAKKSRPSNDQK--QYVNKSGEGISKVGQSYGGRGRTRGRGRGGGGGRGRGYNRG 541
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 33.4 bits (76), Expect = 0.60
Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 664 PGPPMFPPGGPGPNFSGSGPPGMFPPGGP-PNFGPNGPMGPPSGPSGPMGPPGGPNGPMG 722
P PGP + PG P P P P PP S P+ P + P
Sbjct: 396 EPDLPQPDRHPGP--AKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRN 453
Query: 723 PPGGGPGPNFPPGSGGPGNFGPNGPR 748
G PG + G NF NG R
Sbjct: 454 VASGKPGVDLGSWQGKFMNFTRNGSR 479
Score = 33.0 bits (75), Expect = 0.87
Identities = 34/115 (29%), Positives = 39/115 (33%), Gaps = 12/115 (10%)
Query: 601 DGEEEWTPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFP-PNFGPGPPGPN 659
DG +P GS DV + P +P PGP P P P P P P P
Sbjct: 377 DGGVAPSPAGSPDVKKKAPEPDL--PQPDRHPGPAKPEAPGARPAELPSPASAPTPEQ-- 432
Query: 660 FPGGPGPPMFPPGG---PGPNFSGSGPPGM---FPPGGPPNFGPNGPMGPPSGPS 708
P PP N + SG PG+ G NF NG P S
Sbjct: 433 QPPVARSAPLPPSPQASAPRNVA-SGKPGVDLGSWQGKFMNFTRNGSRKQPVQAS 486
Score = 31.5 bits (71), Expect = 2.2
Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 16/85 (18%)
Query: 670 PPGGPGPNFSGSGP--------PGMFPPGGPPNFGPNGPM-------GPPSGPSGPMGPP 714
GG P+ +GS P P P P P S P+ PP
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPP 435
Query: 715 GGPNGPMGP-PGGGPGPNFPPGSGG 738
+ P+ P P N G G
Sbjct: 436 VARSAPLPPSPQASAPRNVASGKPG 460
Score = 30.3 bits (68), Expect = 5.4
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 28/137 (20%)
Query: 100 DRRALQPDVMYYP-------------HMLPPPSF-------EDNATNAV----TTRFVK- 134
D R L+ +V Y P HML +F E+ +A+ TT K
Sbjct: 111 DIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170
Query: 135 AATNKMRCPIFSMTWTPEGR---RLAHDCAVRHMVWSHNGLWMVTSDHQGYIKYWQSNMN 191
AT RC F+ P +L C + + L ++ QG ++ QS ++
Sbjct: 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILD 230
Query: 192 NVKTFQGHKESIRGISF 208
V F E+ + I++
Sbjct: 231 QVIAFSVGSEAEKVIAY 247
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 33.4 bits (76), Expect = 0.62
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 624 MGGRPPGFPGPGGPMFPPGGPPNF-PPNFGPGPPGP 658
M PPG P P P PP F PP+ P PP P
Sbjct: 1 MASLPPGNPPPPPP------PPGFEPPSQPPPPPPP 30
Score = 33.4 bits (76), Expect = 0.64
Identities = 18/34 (52%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 639 FPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPG 672
PPG PP PP P PPG P P PP PPG
Sbjct: 4 LPPGNPP--PP---PPPPGFEPPSQPPPP-PPPG 31
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 33.5 bits (76), Expect = 0.64
Identities = 25/79 (31%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 666 PPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPG 725
PP P GP + PP M PP P GP GP GPP
Sbjct: 552 PPKVSPSDRGP--PKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPA 609
Query: 726 GGPGPNFPPGSGGPGNFGP 744
GP PP S P + P
Sbjct: 610 SGPHEKQPP-SSAPRDMAP 627
Score = 33.5 bits (76), Expect = 0.64
Identities = 20/77 (25%), Positives = 22/77 (28%)
Query: 648 PPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGP 707
PP P GP P G +GP M PP P GPP+
Sbjct: 552 PPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASG 611
Query: 708 SGPMGPPGGPNGPMGPP 724
PP M P
Sbjct: 612 PHEKQPPSSAPRDMAPS 628
Score = 32.7 bits (74), Expect = 1.2
Identities = 21/79 (26%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 656 PGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPG 715
P P GPP P P +GP M P P GP GPP
Sbjct: 552 PPKVSPSDRGPPKASPPVMAP--PSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPA 609
Query: 716 GPNGPMGPPGGGPGPNFPP 734
PP P P
Sbjct: 610 SGPHEKQPPSSAPRDMAPS 628
Score = 30.8 bits (69), Expect = 4.1
Identities = 24/87 (27%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 675 GPNFSGSGPPGMFPP-GGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFP 733
G + PP + P GPP P M PPS M P M PP GP
Sbjct: 544 GRRQKRATPPKVSPSDRGPPKASPP-VMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAK 602
Query: 734 ----PGSGGPGNFGPNGPRPNFSGGPK 756
P + GP P P
Sbjct: 603 CKDGPPASGPHEKQPPSSAPRDMAPSV 629
>gnl|CDD|220915 pfam10961, DUF2763, Protein of unknown function (DUF2763). This
eukaryotic family of proteins has no known function.
Length = 91
Score = 30.4 bits (69), Expect = 0.79
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 686 MFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNG--PMGPPGGGPGPNFPPGSGG 738
MF P + N G G PG P G MG GGG GP+ PP +GG
Sbjct: 39 MFSPDVTKRYRKNS--SSGKRWDGGRGGPGPPGGGRRMGRIGGGGGPSRPPMAGG 91
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 32.8 bits (75), Expect = 0.82
Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 5/97 (5%)
Query: 646 NFPPNFGPGPPGPNFPGG-PGPPMFPPGGPGPNFSGSGPPGM-FPPGGPPNFGPNGPMGP 703
FP + P P P P P PP +G P G P P
Sbjct: 46 EFPWD--PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFAL 103
Query: 704 PSGPSGP-MGPPGGPNGPMGPPGGGPGPNFPPGSGGP 739
P+GP+GP + G P+ P P
Sbjct: 104 PAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQP 140
Score = 31.3 bits (71), Expect = 2.6
Identities = 26/134 (19%), Positives = 29/134 (21%), Gaps = 10/134 (7%)
Query: 683 PPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNF--PPGSGGPG 740
P P P P P + + P G N P G P P F P G GP
Sbjct: 53 PQAPPPVAQLPQPLPQ-PPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPT 111
Query: 741 NFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNN----YGPPNNSGGPPGPNMRDN 796
G P P P YG P + P
Sbjct: 112 IQTEPGQLYPV-QVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQK 170
Query: 797 DDRRGGGGNYNDNS 810
N
Sbjct: 171 --NDESQLQQQPNG 182
Score = 29.3 bits (66), Expect = 9.0
Identities = 21/83 (25%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Query: 639 FPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGG-PGPNFSGSGPPGMFPPGGPPNFGP 697
FP P PP P P P G + + +G P PP P
Sbjct: 47 FPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFAL--P 104
Query: 698 NGPMGPP-SGPSGPMGPPGGPNG 719
GP GP G + P P
Sbjct: 105 AGPAGPTIQTEPGQLYPVQVPVM 127
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 32.9 bits (75), Expect = 0.85
Identities = 16/81 (19%), Positives = 18/81 (22%), Gaps = 2/81 (2%)
Query: 655 PPGPNFPGGPGPPMFPP--GGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMG 712
P P P P P P+ P P P P P P
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421
Query: 713 PPGGPNGPMGPPGGGPGPNFP 733
P + P P P
Sbjct: 422 PHTPESAPKLTRAAIPVDEKP 442
Score = 30.9 bits (70), Expect = 3.6
Identities = 18/86 (20%), Positives = 21/86 (24%), Gaps = 2/86 (2%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P P P P P P P P P P+ PP P +
Sbjct: 370 KPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAP 429
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSG 706
P P + P P P
Sbjct: 430 KLTRAAIPVDEKPKYTP--PAPPKEE 453
Score = 29.8 bits (67), Expect = 7.8
Identities = 19/97 (19%), Positives = 19/97 (19%), Gaps = 12/97 (12%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
P P P P P P PP PP PP
Sbjct: 365 APQPAKPTAAAPSPVRPTPAPSTRPKAAAA-ANIPPKEPVRETATPPPVPP--------- 414
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGP 717
P P P P P P P
Sbjct: 415 --RPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.
Length = 629
Score = 32.9 bits (75), Expect = 0.86
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 794 RDNDDRRGGGGNYNDNSYDNEDGNDWQGGDDNGWGDGGGQNYQNNERYNNDRNNWEEPRR 853
+RRGGG + + +G G+ G G G R++ +R PRR
Sbjct: 566 HTGGERRGGGRGFGG---ERREGGRNFSGERREGGRGDG------RRFSGERREGRAPRR 616
Query: 854 GRGGGKMR 861
G+ R
Sbjct: 617 DDSTGRRR 624
Score = 31.7 bits (72), Expect = 1.8
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 824 DNGWGDGGGQNYQNNERYNNDRNNWEEPRRGRGGGKMRGGKRGRGRGGRG 873
G GGG+ + R + E GRG G+ G+R GR R
Sbjct: 567 TGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRR 616
Score = 31.7 bits (72), Expect = 1.9
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 815 DGNDWQGGDDNGWGDG-GGQNYQNNERYNNDRNNWEEPRRGRGGGKMRGGKRGRGRGGRG 873
D GG+ G G G GG+ + ++ +R R G+ R G+ R G
Sbjct: 562 DAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTG 621
Query: 874 KR 875
+R
Sbjct: 622 RR 623
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein. The WWbp domain is
characterized by several short PY and PT-like motifs of
the PPPPY form. These appear to bind directly to the WW
domains of WWP1 and WWP2 and other such diverse proteins
as dystrophin and YAP (Yes-associated protein). This is
the WW-domain binding protein WWbp via PY and PY_like
motifs. The presence of a phosphotyrosine residue in the
pWBP-1 peptide abolishes WW domain binding which
suggests a potential regulatory role for tyrosine
phosphorylation in modulating WW domain-ligand
interactions. Given the likelihood that WWP1 and WWP2
function as E3 ubiquitin-protein ligases, it is possible
that initial substrate-specific recognition occurs via
WW domain-substrate protein interaction followed by
ubiquitin transfer and subsequent proteolysis. This
domain lies just downstream of the GRAM (pfam02893) in
many members.
Length = 111
Score = 30.8 bits (70), Expect = 0.88
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 620 YPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGP 664
P G PP + ++P PPN P P P +PG P
Sbjct: 66 AAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPPPPYPGPP 110
Score = 30.1 bits (68), Expect = 1.8
Identities = 25/95 (26%), Positives = 28/95 (29%), Gaps = 30/95 (31%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPN 677
G YPP P G PP +GP PP
Sbjct: 45 GYYPPPGAYVHLEPL-------PAYGQYAAPPPYGP----------------PPPYYPA- 80
Query: 678 FSGSGPPGMFPPGGPPNFGPN-GPMGPPSGPSGPM 711
PPG++P PPN G P PP GP
Sbjct: 81 -----PPGVYPTPPPPNSGYMADPQEPPPPYPGPP 110
Score = 29.3 bits (66), Expect = 2.9
Identities = 17/76 (22%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Query: 646 NFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPS 705
P + G P P+ P G GPP + P P + P
Sbjct: 37 AQPVSRESGYYPPPGAYVHLEPL-PAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGY 95
Query: 706 GPSGPMGPPGGPNGPM 721
+ P PP GP
Sbjct: 96 -MADPQEPPPPYPGPP 110
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 32.6 bits (74), Expect = 1.1
Identities = 11/82 (13%), Positives = 13/82 (15%), Gaps = 12/82 (14%)
Query: 649 PNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGM-FPPGGPPNFGPNGPMGPPSGP 707
P+ P P P P+ P P P
Sbjct: 340 PDTPLLPDAPEGSSDPVVPVAA-----------ATPVDASLPDVRTGTAPTSLANVSHAD 388
Query: 708 SGPMGPPGGPNGPMGPPGGGPG 729
P P G
Sbjct: 389 PAVAQPTQAATLAGAAPKGATH 410
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 32.4 bits (74), Expect = 1.1
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 25/110 (22%)
Query: 475 PGLDIDSTELQKIIPVKKVPFSKPIPKHFQEAWMNKIIVYDTKV-LPVAEND-------- 525
G ID TEL + I V K +PK + A KI + D + + E D
Sbjct: 201 TGGSIDDTELVEGIVVDKEVVHPGMPKRVENA---KIALLDAPLEVEKTEIDAEIRITDP 257
Query: 526 --MKALNEAAIKVLMEKVPGTKKIADLNPDAIFVHGKVIKVQKG-SELAQ 572
++ + +L E V KIAD + + QKG ++AQ
Sbjct: 258 DQIQKFLDQEEAMLKEMV---DKIADAGANVVI-------CQKGIDDVAQ 297
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 32.1 bits (72), Expect = 1.2
Identities = 28/118 (23%), Positives = 34/118 (28%), Gaps = 2/118 (1%)
Query: 638 MFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGP 697
M P G P+ P P P P P P + + PP P PP P
Sbjct: 73 MQRPSGQSPLAPSPACAAPAPACPA-CAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCP 131
Query: 698 NGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGP 755
P+ P P P P P P F P ++ P P P
Sbjct: 132 APARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDY-PAASCPTIETAP 188
>gnl|CDD|222425 pfam13865, FoP_duplication, C-terminal duplication domain of Friend
of PRMT1. Fop, or Friend of Prmt1, proteins are
conserved from fungi and plants to vertebrates. There is
little that is actually conserved except for this
C-terminal LDXXLDAYM region where X is any amino acid).
The Fop proteins themselves are nuclear proteins
localised to regions with low levels of DAPI, with a
punctate/speckle-like distribution. Fop is a
chromatin-associated protein and it colocalises with
facultative heterochromatin. It is is critical for
oestrogen-dependent gene activation.
Length = 76
Score = 29.4 bits (66), Expect = 1.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 852 RRGRGGGKMRGGKRGRGRGGRGKRGM 877
R+G GGK R RG RG R RG
Sbjct: 4 RKGSRGGKFRPRGRGARRGRRRGRGG 29
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 32.1 bits (73), Expect = 1.4
Identities = 20/74 (27%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 656 PGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSG--PSGPMGP 713
P G P P PGP G PG P PP P PP+ P + P
Sbjct: 125 ANPVTATGEPVPQMPASPPGPE--GEPQPGNTPVSFPPQGSVAVP--PPTAFYPGNGVTP 180
Query: 714 PGGPNGPMGPPGGG 727
P P
Sbjct: 181 PPQVTYQSVPVPNR 194
Score = 32.1 bits (73), Expect = 1.5
Identities = 22/76 (28%), Positives = 23/76 (30%), Gaps = 11/76 (14%)
Query: 641 PGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGP 700
G P P PPGP G P P P P PP F PG NG
Sbjct: 130 ATGEPV--PQMPASPPGPE--GEPQPGNTPVSFPPQGSVAVPPPTAFYPG-------NGV 178
Query: 701 MGPPSGPSGPMGPPGG 716
PP + P
Sbjct: 179 TPPPQVTYQSVPVPNR 194
Score = 31.3 bits (71), Expect = 2.3
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 618 GGYPPAMGGRP-PGFP----GPGGPMFPPGGPPNFPPNFGPGPPGPN--FPGG---PGPP 667
G P G P P P GP G P P +FPP P P +PG P P
Sbjct: 124 GANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPPQ 183
Query: 668 MFPPGGPGPN 677
+ P PN
Sbjct: 184 VTYQSVPVPN 193
Score = 30.6 bits (69), Expect = 4.1
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 702 GPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGP 755
P+ P GP G P N P+ P G PP + PGN P P +
Sbjct: 137 QMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGN--GVTPPPQVTYQS 188
Score = 30.2 bits (68), Expect = 6.0
Identities = 17/73 (23%), Positives = 19/73 (26%), Gaps = 3/73 (4%)
Query: 699 GPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGP 758
G + P P GP G P G P P G P + G P
Sbjct: 124 GANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSV---AVPPPTAFYPGNGVTP 180
Query: 759 NFGPKGPRGPGPN 771
P PN
Sbjct: 181 PPQVTYQSVPVPN 193
Score = 29.4 bits (66), Expect = 9.1
Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 664 PGP-PMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGP----PGGPN 718
G P+ G P P + PPG P G P G PP G P PG
Sbjct: 123 LGANPVTATGEPVPQM-PASPPG---PEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGV 178
Query: 719 GPMGPPGGGPGPNFPPG 735
P PP P
Sbjct: 179 TP--PPQVTYQSVPVPN 193
Score = 29.4 bits (66), Expect = 10.0
Identities = 22/78 (28%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Query: 716 GPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPG 775
G N G P P P GP P S P+G P P F PG
Sbjct: 124 GANPVT--ATGEPVPQMPASPPGP-EGEPQPGNTPVSFPPQGSVAVP-----PPTAFYPG 175
Query: 776 PNNYGPPNNSGGP-PGPN 792
PP + P PN
Sbjct: 176 NGVTPPPQVTYQSVPVPN 193
>gnl|CDD|112739 pfam03940, MSSP, Male specific sperm protein. This family of
drosophila proteins are typified by the repetitive motif
C-G-P.
Length = 48
Score = 28.5 bits (64), Expect = 1.5
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 691 GPPNFGPNGPMGPPSGPS---GPMGPPGGPNGPMGPPGGGPGP 730
G P GP G GP G GP GP GP GP GP G
Sbjct: 2 GGPCCGPCGGCGPCGGCGPCCGPCGPCCGPCGPCGPCCGTMEK 44
>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2). DAZ
associated protein 2 has a highly conserved sequence
throughout evolution including a conserved polyproline
region and several SH2/SH3 binding sites. It occurs as a
single copy gene with a four-exon organisation and is
located on chromosome 12. It encodes a ubiquitously
expressed protein and binds to DAZ and DAZL1 through DAZ
repeats.
Length = 136
Score = 30.6 bits (69), Expect = 1.5
Identities = 23/86 (26%), Positives = 28/86 (32%)
Query: 619 GYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNF 678
PP P PG M+ P PP +P G PP++PPG
Sbjct: 17 VVPPQAQMPQASAPYPGPSMYLPMAQVMAVGPQSSHPPMAYYPIGAPPPVYPPGSTVLVQ 76
Query: 679 SGSGPPGMFPPGGPPNFGPNGPMGPP 704
G F PG + P P P
Sbjct: 77 GGFDAGARFGPGTGSSIPPPPPGCAP 102
Score = 30.2 bits (68), Expect = 2.0
Identities = 25/101 (24%), Positives = 29/101 (28%), Gaps = 9/101 (8%)
Query: 637 PMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPP------G 690
P PP + P++ P P P GP PP G
Sbjct: 2 PDAPPAYSELYQPSYVVPPQAQMPQASAPYPGPSMYLPMAQVMAVGPQSSHPPMAYYPIG 61
Query: 691 GPPNFGPNGPMGPPSG---PSGPMGPPGGPNGPMGPPGGGP 728
PP P G G GP G + P PPG P
Sbjct: 62 APPPVYPPGSTVLVQGGFDAGARFGPGTGSSIPPPPPGCAP 102
Score = 28.7 bits (64), Expect = 6.7
Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 5/105 (4%)
Query: 687 FPPGGPP--NFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGP 744
+P P + PP P P M P P S P + P
Sbjct: 1 YPDAPPAYSELYQPSYVVPPQAQMPQASAPY-PGPSMYLPMAQVMAVGPQSSHPPMAYYP 59
Query: 745 NGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPP 789
G P P G +G G FGPG + PP G P
Sbjct: 60 IGAPP--PVYPPGSTVLVQGGFDAGARFGPGTGSSIPPPPPGCAP 102
>gnl|CDD|214832 smart00817, Amelin, Ameloblastin precursor (Amelin). This family
consists of several mammalian Ameloblastin precursor
(Amelin) proteins. Matrix proteins of tooth enamel
consist mainly of amelogenin but also of non-amelogenin
proteins, which, although their volumetric percentage is
low, have an important role in enamel mineralisation.
One of the non-amelogenin proteins is ameloblastin, also
known as amelin and sheathlin. Ameloblastin (AMBN) is
one of the enamel sheath proteins which is though to
have a role in determining the prismatic structure of
growing enamel crystals.
Length = 411
Score = 31.8 bits (72), Expect = 1.6
Identities = 48/227 (21%), Positives = 58/227 (25%), Gaps = 50/227 (22%)
Query: 607 TPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGP 666
P G PP G+PP + P P + PP P +F P
Sbjct: 122 LPTNQATPQKNGPQPPMHLGQPPLQQAELPMIPPQVAPSDKPPQ--TELPLYDFADPQNP 179
Query: 667 PMF------PPGGPGPNFSGSGPPGMF------PPGGPPNFGPNGPMGPPSGPSGPMGPP 714
+F G N PG+F G P G M G P
Sbjct: 180 LLFQIAHLMSRGPMPQNKQQHLYPGLFYMSYGANQLGAP--ARLGAMSSEEMTGGRGAPH 237
Query: 715 GGPNGPMGPPGGGPGPNF-------------------------PPGSGGPGNFGPNGPRP 749
G + P GG P P G G G P
Sbjct: 238 A--YGALFPGLGGMRPGLRGMPQNPAMQGDFTLEDDSPVAATKGPEKGEGGAQGSPIPEA 295
Query: 750 NFSGGPKGPNFGPKGPRGPGPNFGPGPNN------YGPPNNSGGPPG 790
P+ P +G G PN+ P S GPPG
Sbjct: 296 Q-GVDPENPALLSEGAPGGHGGLLAFPNDNIPNLARNPQGQSKGPPG 341
>gnl|CDD|233507 TIGR01648, hnRNP-R-Q, heterogeneous nuclear ribonucleoprotein R, Q
family. Sequences in this subfamily include the human
heterogeneous nuclear ribonucleoproteins (hnRNP) R , Q
and APOBEC-1 complementation factor (aka APOBEC-1
stimulating protein). These proteins contain three RNA
recognition domains (rrm: pfam00076) and a somewhat
variable C-terminal domain.
Length = 578
Score = 31.9 bits (72), Expect = 1.6
Identities = 35/160 (21%), Positives = 40/160 (25%), Gaps = 15/160 (9%)
Query: 598 SYIDGEEEWTPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFP----PGGPPNFPPNFGP 653
G E + G D RG Y G PG PM P PGG P
Sbjct: 386 YPPYGYEAYYGDYYGYHDYRGKYEDKYYGYDPGMELT--PMNPVRGKPGGRGGRP---AI 440
Query: 654 GPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGP 713
PP G P P + G + + P G P GP P G GP
Sbjct: 441 PPPRGRKNGAPPPAIGQDGRQLFLYKITIPAGYSQRPAPHPLGP--PRGSAFVRGARGGP 498
Query: 714 PGGPNGPMGPPGGGPGPNFPP----GSGGPGNFGPNGPRP 749
G G P+
Sbjct: 499 AQYQQRGRGSRTSRGNGRGGTAGGKRKAFDGYAQPDATAR 538
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 32.1 bits (73), Expect = 1.7
Identities = 24/152 (15%), Positives = 34/152 (22%), Gaps = 27/152 (17%)
Query: 651 FGPGPPGPNFPGGPGPPMFPPGGPGP------NFSGSGPPGMFPPGGPPNFGPNGPMGPP 704
F P G PGG P P P S P + G
Sbjct: 358 FEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA 417
Query: 705 SGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGP-------KG 757
+ + PP P PP + G+ +G P + +
Sbjct: 418 AAATRAEAPPAAPA--------------PPATADRGDDAADGDAPVPAKANARASADSRC 463
Query: 758 PNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPP 789
+ P G P + P
Sbjct: 464 DERDAQPPADSGSASAPASDAPPDAAFEPAPR 495
Score = 31.4 bits (71), Expect = 2.7
Identities = 28/194 (14%), Positives = 39/194 (20%), Gaps = 13/194 (6%)
Query: 620 YPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFS 679
+ PA+ G G PG G P G P P P +
Sbjct: 358 FEPAVTG--GGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAA 415
Query: 680 GSGPPGMF--PPGGPPNFGP----NGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFP 733
+ PP P + + + P +
Sbjct: 416 AAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSG 475
Query: 734 PGSGGPGNFGPNGPR-PNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGP---PNNSGGPP 789
S + P+ P P P + P PP
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP 535
Query: 790 GPNMRDNDDRRGGG 803
P R GG
Sbjct: 536 TP-AAAAPAARAGG 548
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 32.0 bits (72), Expect = 1.7
Identities = 24/103 (23%), Positives = 27/103 (26%), Gaps = 7/103 (6%)
Query: 633 GPGGPMFPPGGPPNFPPNFGPGP-PGPNFPGGPGPPMFP------PGGPGPNFSGSGPPG 685
GP P+F P P P P P P P P P P + P
Sbjct: 739 GPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 798
Query: 686 MFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGP 728
P P P P P+ P P P P
Sbjct: 799 APQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQP 841
>gnl|CDD|217341 pfam03057, DUF236, Protein of unknown function. This family
represents the C-terminal region of a number of C.
elegans proteins of unknown function.
Length = 139
Score = 30.4 bits (68), Expect = 1.8
Identities = 26/114 (22%), Positives = 32/114 (28%), Gaps = 11/114 (9%)
Query: 615 DLRGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGP---------GPPGPNFPGGPG 665
+ P A G GP P+ P PN+ G G G G
Sbjct: 4 GKKNEDPKAGDADVKGEDGPKAPVDKPAMAGTHDPNYQTLAGLNNDVFGKKGGAPAAGGG 63
Query: 666 PPMFPPGGPGPNFSGSGPPGMFPPGGPPN--FGPNGPMGPPSGPSGPMGPPGGP 717
P P G P + + P G N F P +G GP P
Sbjct: 64 GPKAPAAGGKPGMAATHDPNYQTLAGLNNNVFKKKDGAAPAAGGGGPKAPADKN 117
>gnl|CDD|218994 pfam06333, Med13_C, Mediator complex subunit 13 C-terminal.
Mediator is a large complex of up to 33 proteins that is
conserved from plants through fungi to humans - the
number and representation of individual subunits varying
with species. It is arranged into four different
sections, a core, a head, a tail and a kinase-activity
part, and the number of subunits within each of these is
what varies with species. Overall, Mediator regulates
the transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med13 is part of the
ancillary kinase module, together with Med12, CDK8 and
CycC, which in yeast is implicated in transcriptional
repression, though most of this activity is likely
attributable to the CDK8 kinase. The large Med12 and
Med13 proteins are required for specific developmental
processes in Drosophila, zebrafish, and Caenorhabditis
elegans but their biochemical functions are not
understood.
Length = 406
Score = 31.5 bits (72), Expect = 2.0
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 770 PNFGPGPNNYGPPNNSGGPPGPNMRDNDDRRGGGGNYNDNSYDNEDGNDWQGGDDNGWG 828
P P ++ P+ G P P + +N + + +++ + DD WG
Sbjct: 253 PQSTPCTLSFPSPDQFGNAPTPPLGENGNDNAPPVTPPGSPSESDPDSILVDIDDETWG 311
>gnl|CDD|221827 pfam12881, NUT_N, NUT protein N terminus. This family includes the
NUT protein. The gene encoding for NUT protein (Nuclear
Testis protein) is found fused to BRD3 or BRD4 genes, in
some aggressive types of carcinoma, due to chromosomal
translocations. Proteins of the BRD family contain two
bromodomains that bind transcriptionally active
chromatin through associations with acetylated histones
H3 and H4. Such proteins are crucial for the regulation
of cell cycle progression. On the other hand, little is
known about NUT protein. NUT is known to have a Nuclear
Export Sequence (NES) as well as a Nuclear Localization
Signal (NLS), both located towards the C-terminal end of
the protein. A fused NUT-GFP protein showed either
cytoplasmic or nuclear localization, suggesting that it
is subject to nuclear/cytoplasmic shuttling. Consistent
with this possibility, treatment with leptomycin B an
inhibitor of CRM1-dependent nuclear export resulted in
re-distribution of NUT-GFP to the nucleus. Inspection of
NUT revealed a C-terminal sequence similar to known
nuclear export sequences (NES) which are often regulated
by phosphorylation.
Length = 328
Score = 31.5 bits (71), Expect = 2.0
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 664 PGPPM-FPPGGPGPNFSG--SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGP 720
GP M PG F+ PP PP P P + P P+ P+ P
Sbjct: 3 LGPDMTMNPGASLSPFAALPFLPPAPQPPDQPFWEPPPPLVTAGFSPGNPLVLSALPSMP 62
Query: 721 MGPPGGGPGPNFPPGSGGPGN 741
+ GGGPG + G GN
Sbjct: 63 LVTEGGGPGLS----GAGAGN 79
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.
Length = 456
Score = 31.7 bits (72), Expect = 2.0
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 815 DGNDWQGGDDNGWGDGGGQNYQNNERYNN-----DRNNWEEPRRGRGGGKMRGGKRGRGR 869
+G +GG G G G GQ R E+P R G K G ++ R R
Sbjct: 389 NGRQQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRR 448
Score = 30.5 bits (69), Expect = 3.8
Identities = 12/59 (20%), Positives = 13/59 (22%)
Query: 712 GPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGP 770
G G G G G P R P G + PR P
Sbjct: 396 GGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRKPAA 454
>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and
metabolism].
Length = 164
Score = 30.4 bits (69), Expect = 2.1
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 385 GHILATGSNDHASKFWTRNRLGDPMRDRYNQKGLAHCITGVYNEE 429
G I+ATG N S G HC ++ E+
Sbjct: 38 GRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQ 82
>gnl|CDD|216044 pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.
Length = 124
Score = 29.8 bits (67), Expect = 2.1
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 16/99 (16%)
Query: 216 ATCSDDGTVRVWDFYRCTEEKVLRGHGADVKC--VDWHPYKSLIV----SGSKDNQQPVK 269
C G W + +R +G C V S +V +G NQ+
Sbjct: 30 YPCHGGGNQL-WTLTG---DGTIRSNGNSNLCLDVSGGGNGSKVVLWPCNGGSGNQR--- 82
Query: 270 LWDPKAGQALATLHAHKSTVMDLAWNQNGNWLVTASRDH 308
WD + + +D+ NG ++ + D
Sbjct: 83 -WDYDGDGTIR--NRKSGKCLDVKGASNGTKVILWTCDG 118
>gnl|CDD|221518 pfam12301, CD99L2, CD99 antigen like protein 2. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 165 and 237 amino acids in length.
CD99L2 and CD99 are involved in trans-endothelial
migration of neutrophils in vitro and in the recruitment
of neutrophils into inflamed peritoneum.
Length = 154
Score = 30.1 bits (68), Expect = 2.5
Identities = 22/91 (24%), Positives = 23/91 (25%), Gaps = 5/91 (5%)
Query: 744 PNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGPPNNSGGPPGPNMRDNDDRRGGG 803
G P P P P G P GG G + D D G G
Sbjct: 26 SKGDDDFDLEDALDGGNDGGAGPKPKPRPQPDP---GNPGGDGG--GFSDSDLADVAGDG 80
Query: 804 GNYNDNSYDNEDGNDWQGGDDNGWGDGGGQN 834
G D G GG D G G
Sbjct: 81 GYKPDKGKGGGGGGGGGGGTDGGPEGGAETG 111
>gnl|CDD|237695 PRK14376, PRK14376, hypothetical protein; Provisional.
Length = 176
Score = 30.3 bits (68), Expect = 2.5
Identities = 21/66 (31%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 618 GGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPN 677
GGY P G P GPG P G GP G G P P GG G
Sbjct: 103 GGYDPVPGEAPGTSVGPGTVRKPRGRTRT-----AGGPVGAVDAGTPHRSRRPTGGHGTA 157
Query: 678 FSGSGP 683
G
Sbjct: 158 SLHRGT 163
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 31.1 bits (71), Expect = 2.6
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 22/107 (20%)
Query: 479 IDSTELQKII----PVKKVPFSKPI-PKHFQEAWMNKIIVYDTKVLPVAEN----DMKAL 529
ID L+KI+ +++ ++ P + ++A + ++ + LP + D + L
Sbjct: 43 IDKEALEKILEKPGEGEEILIARGKPPVNGKDARIEFLVDTARERLPPQDEDGRVDFREL 102
Query: 530 NEAAIK------VLMEKVPGTKKIADLNPDAIFVHGKVIKVQKGSEL 570
I VL K+P T V G+VI + G +L
Sbjct: 103 GS--IISVKPGDVLARKIPPTPGEPGRT-----VFGEVIPPKPGKDL 142
>gnl|CDD|214454 MTH00198, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 607
Score = 31.4 bits (71), Expect = 2.8
Identities = 18/95 (18%), Positives = 20/95 (21%), Gaps = 23/95 (24%)
Query: 695 FGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNF-PPGSGGPGNFGPNGPRPNFS- 752
F G G G P+G P P F P + P
Sbjct: 55 FTIQGSFGYSGGS--PLGSPSTLKDLWENDVKSLSPAFENSEPMTPFPWILMDPTLGRGE 112
Query: 753 ----------GGPKGPNFGPKGPRGPGPNFGPGPN 777
G FG F GPN
Sbjct: 113 PVPLNLFDILSNYFGGAFGA---------FAMGPN 138
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 31.1 bits (70), Expect = 3.1
Identities = 41/212 (19%), Positives = 50/212 (23%), Gaps = 23/212 (10%)
Query: 666 PPMFPPGGPGPNFSGS-GPPGMFPPGGPPNFGPNGPMGPPSGPSG-PMGPPGGPNGPMGP 723
+F G P ++ S P G P P PP P P P
Sbjct: 406 TELFRTGVPSEHYEASLRLLSSRQPPGAP--APRRDNDPPPPPRARPGSTPACARRARAQ 463
Query: 724 PGGGPGPNFPPGSGGPGNF-GPNGPRPNFSGGPKG-----------PNFGPKGPRGPGPN 771
GP + G P P + P P P+
Sbjct: 464 RARDAGPEYVDPLGALRRLPAGAAPPPEPAAAPSPATYYTRMGGGPPRLPPRNRATETLR 523
Query: 772 FGPGPNNYGPPNNSGGPPGPNMRDNDDRRGGGGNYNDNSYDNEDGNDWQGGDDN---GWG 828
GP PP P D DRR G + D DD G
Sbjct: 524 PDWGPPAAAPPEQMEDPYLEPDDDRFDRRDGAAAAATSHPREAPAPD----DDPIYEGVS 579
Query: 829 DGGGQNYQNNERYNNDRNNWEEPRRGRGGGKM 860
D Y+ +N P G G
Sbjct: 580 DSEEPVYEEIPTPRVYQNPLPRPMEGAGEPPD 611
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 31.1 bits (70), Expect = 3.1
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 623 AMGGRPPGFPGPGGPMFP-PG------GPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPG 675
A + PG M P PG P+ P P+ GP FP G
Sbjct: 408 AAHTQDLSSVIPGWTMLPIPGTRRISQSTSTTNPSATPTTGDPSNSTYGGPQTFPNSGNN 467
Query: 676 PNFSGSGPPGMFPP 689
PNF G G+ PP
Sbjct: 468 PNF-NRGIAGIVPP 480
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 31.1 bits (70), Expect = 3.1
Identities = 14/72 (19%), Positives = 18/72 (25%), Gaps = 11/72 (15%)
Query: 712 GPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPR--------PNFSGGPKGPNFGPK 763
G GP G G G G + P R + G + P
Sbjct: 434 GGRSGPGGGSRSGSVGGGGR---RDGAGADGKPRPRRKPRVEGEADAAAAGAETPVVAAA 490
Query: 764 GPRGPGPNFGPG 775
+ PG G
Sbjct: 491 AAQAPGVVAADG 502
Score = 30.3 bits (68), Expect = 5.0
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 822 GDDNGWGDGGGQNYQNNERYNNDRNNWEEPRRGRGGGKMRGGKRGRGRGGRGKRG 876
D+ GD G + R ++ EE RRG G R G G R G G
Sbjct: 405 EADDEAGDSVGTIF----REAREQRAAEEQRRGGG----RSGPGGGSRSGSVGGG 451
>gnl|CDD|220403 pfam09788, Tmemb_55A, Transmembrane protein 55A. Members of this
family catalyze the hydrolysis of the 4-position
phosphate of phosphatidylinositol 4,5-bisphosphate, in
the reaction: 1-phosphatidyl-myo-inositol
4,5-bisphosphate + H(2)O =
1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Length = 258
Score = 30.6 bits (69), Expect = 3.1
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 633 GPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGP 683
P GPP+ PP P P PP P P SGS P
Sbjct: 19 TGVSPGDEGAGPPSKPPYDQNFAPFPVLLSELPPPYSPAQSPD---SGSAP 66
>gnl|CDD|235799 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed.
Length = 148
Score = 29.8 bits (68), Expect = 3.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 852 RRGRGGGKMRGG--KRGRGRGGRGKRGM 877
R+ RG GG K RG G RG RGM
Sbjct: 9 RKLRGSRTHGGGTHKNHRGAGSRGGRGM 36
>gnl|CDD|221055 pfam11276, DUF3078, Protein of unknown function (DUF3078). This
bacterial family of proteins has no known function.
Length = 92
Score = 28.8 bits (65), Expect = 3.3
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 817 NDWQGGDDNGWGDGGGQNYQNNERYNNDRNNWE 849
++W G +N G N N Y ++ +W+
Sbjct: 7 SNWYAGGENNVSGNLGLNGFAN--YKKEKISWD 37
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 30.8 bits (70), Expect = 3.4
Identities = 17/115 (14%), Positives = 21/115 (18%)
Query: 621 PPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSG 680
PA P P P P P P P P
Sbjct: 380 TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439
Query: 681 SGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPG 735
+ P + PP + P + P P G
Sbjct: 440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494
>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517). This
family consists of several hypothetical glycine rich
plant and bacterial proteins of around 300 residues in
length. The function of this family is unknown.
Length = 280
Score = 30.4 bits (69), Expect = 3.4
Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 690 GGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFG 743
GG P+ P S G G G GG P P G G G
Sbjct: 9 GGGSFRAPSRSSSSPRSSSPGGGGYYGSPG-----GGFGFPFLIPFFGFGGGGG 57
Score = 29.2 bits (66), Expect = 7.9
Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 15/72 (20%)
Query: 617 RGGYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGP 676
GG +GG P P G G + GG G FP P
Sbjct: 4 SGG---RIGGGSFRAPSRSSSSPRSSSP-------GGGGYYGSPGGGFG---FPFLIPFF 50
Query: 677 NFSGSGPPGMFP 688
F G G G+F
Sbjct: 51 GFGGGG--GLFG 60
>gnl|CDD|217062 pfam02485, Branch, Core-2/I-Branching enzyme. This is a family of
two different beta-1,6-N-acetylglucosaminyltransferase
enzymes, I-branching enzyme and core-2 branching enzyme
. I-branching enzyme is responsible for the production
of the blood group I-antigen during embryonic
development. Core-2 branching enzyme forms crucial
side-chain branches in O-glycans.
Length = 242
Score = 30.3 bits (69), Expect = 3.9
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 9/99 (9%)
Query: 37 HHRPNFNKNFHTPFRPFHKNPNQIMDPDFDGKKLRKSSMRKTVDYNAAVINALEARVWQR 96
++ P K + + K RK S + A + +
Sbjct: 127 DPGWKGRGRYNPRMLPEIKLSDLPL-------KWRKGSQWFVLSRAFAEYVVSDNLYYPL 179
Query: 97 DYRDRRALQPDVMYYPHMLP-PPSFEDNATNAVTTRFVK 134
PD Y+P +L P F + N T +V
Sbjct: 180 FKYYCNTCYPDEHYFPTLLGMPGHFPNTCVNR-TLTYVD 217
>gnl|CDD|180801 PRK07033, PRK07033, hypothetical protein; Provisional.
Length = 427
Score = 30.4 bits (69), Expect = 4.3
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 697 PNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGG 738
+ P SG G + P G P P G PG G
Sbjct: 3 SSDPFSAGSG--GFVPPNPGDRTPAAAPAAGAPFQPRPGRGA 42
Score = 30.0 bits (68), Expect = 5.6
Identities = 11/47 (23%), Positives = 13/47 (27%)
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPP 734
P + G G + P G P P PG G P
Sbjct: 2 TSSDPFSAGSGGFVPPNPGDRTPAAAPAAGAPFQPRPGRGAASGLNP 48
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein involved
in transcription activation, gene silencing and
initiation of DNA replication. ABF1 is known to remodel
chromatin, and it is proposed that it mediates its
effects on transcription and gene expression by
modifying local chromatin architecture. These functions
require a conserved stretch of 20 amino acids in the
C-terminal region of ABF1 (amino acids 639 to 662 S.
cerevisiae). The N-terminal two thirds of the protein
are necessary for DNA binding, and the N-terminus (amino
acids 9 to 91 in S. cerevisiae) is thought to contain a
novel zinc-finger motif which may stabilise the protein
structure.
Length = 508
Score = 30.5 bits (68), Expect = 4.4
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 5 NPGSNFSMPPPSMSGGGHHHHHHPRGYHGQQFHHRPNFNKNFH 47
N G N P SG HHH H HH N + N H
Sbjct: 82 NSGQNEDGSPGGGSGDEGGHHHG-HNMHAHHHHHHHNGHTNGH 123
>gnl|CDD|213995 cd12111, PHP_HisPPase_Thermotoga_like, Polymerase and Histidinol
Phosphatase domain of Thermotoga like. The PHP (also
called histidinol phosphatase-2/HIS2) domain is
associated with several types of DNA polymerases, such
as PolIIIA and family X DNA polymerases, stand alone
histidinol phosphate phosphatases (HisPPases), and a
number of uncharacterized protein families. Thermotoga
PHP is an uncharacterized protein. HisPPase catalyzes
the eighth step of histidine biosynthesis, in which
L-histidinol phosphate undergoes dephosphorylation to
give histidinol. The HisPPase can be classified into two
types: the bifunctional HisPPase found in proteobacteria
that belongs to the DDDD superfamily and the
monofunctional Bacillus subtilis type that is a member
of the PHP family. The PHP domain has four conserved
sequence motifs and contains an invariant histidine that
is involved in metal ion coordination. The PHP domain of
HisPPase is structurally homologous to other members of
the PHP family that have a distorted (beta/alpha)7
barrel fold with a trinuclear metal site on the
C-terminal side of the barrel.
Length = 226
Score = 30.1 bits (68), Expect = 4.4
Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 20/129 (15%)
Query: 241 HGADVKCVDWHPYKSLIVSGSKDNQQPVKLWDPKAGQALATLHAHKSTVMDLAWNQNGNW 300
HG DV + H + G + + + L AW +
Sbjct: 29 HGFDVIAITDHVVDRASLIGKFPQGTHPGVTEANFEDYMEALKVEAKR----AWEKYEMI 84
Query: 301 L-----VTASRD--HLLKVFDIRN-----LSSEVQTFRGHKKEASAVAWHPQHEGLFSSG 348
+ +T + D H+L + D++ LS E HK+ AVA HP +
Sbjct: 85 VIPGVELTNNTDSYHILGI-DVKEYIDPCLSVEEIIAEIHKQGGIAVAAHPHR---KNLD 140
Query: 349 GADGSIMFW 357
G S+ W
Sbjct: 141 GEHNSLYLW 149
>gnl|CDD|145501 pfam02389, Cornifin, Cornifin (SPRR) family. SPRR genes (formerly
SPR) encode a novel class of polypeptides (small proline
rich proteins) that are strongly induced during
differentiation of human epidermal keratinocytes in
vitro and in vivo. The most characteristic feature of
the SPRR gene family resides in the structure of the
central segments of the encoded polypeptides that are
built up from tandemly repeated units of either eight
(SPRR1 and SPRR3) or nine (SPRR2) amino acids with the
general consensus XKXPEPXX where X is any amino acid.
Length = 153
Score = 29.6 bits (66), Expect = 4.5
Identities = 24/94 (25%), Positives = 25/94 (26%), Gaps = 2/94 (2%)
Query: 629 PGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPG-PNFSGSGPPGMF 687
P PG P G P P P P P PG +
Sbjct: 27 TKVPQPGNTKIPEPGNTKVPEPGCTKVPEPGCTKVPEPCSTKVPEPGRTKVPEPCCTKVP 86
Query: 688 PPGGPPNFGPNGPMGPPSGPSGPMGP-PGGPNGP 720
PG P P P GP P P PG P
Sbjct: 87 EPGYPKVPEPGSTKVPEPGPCHPKVPEPGHTKVP 120
>gnl|CDD|163580 TIGR03868, F420-O_ABCperi, proposed F420-0 ABC transporter,
periplasmic F420-0 binding protein. This small clade of
ABC-type transporter periplasmic binding protein
components is found as a three gene cassette along with
a permease (TIGR03869) and an ATPase (TIGR03873). The
organisms containing this cassette are all
Actinobacteria and all contain numerous genes requiring
the coenzyme F420. This model was defined based on five
such organisms, four of which are lacking all F420
biosynthetic capability save the final side-chain
polyglutamate attachment step (via the gene cofE:
TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this periplasmic binding protein is a
component of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 287
Score = 30.2 bits (68), Expect = 4.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 520 PVAENDMKALNEAAIKVLMEKVPGTKKIADLNPDAIF 556
PV A + AA+ L E+VP + + + PD ++
Sbjct: 49 PVPAE--WATDAAAVPPLSERVPSPEAVLETEPDLVY 83
>gnl|CDD|206488 pfam14320, Paramyxo_PCT, Phosphoprotein P region PCT disordered.
The N-terminal half of the phosphoprotein P of the
Paramyxovirinae viruses. The very first 60 residues have
been built as the family Soyouz-module, pfam14313. The
remaining part of the region, here, is disordered, and
is liable to induced folding under the right
physiological conditions. The region undergoes an
unstructured-to-structured transition upon binding to
Measles virus tail, C, unstructured region.
Length = 313
Score = 30.3 bits (68), Expect = 4.6
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 426 YNEEMELNDSAVIPGMGLEDEDSVFPSSEPLNEVGKSTSGPNT--------NDPSNIPGL 477
+ +E + S VI G+ EDE+ +P VG G + N + PG
Sbjct: 180 FEDEFAGSSSEVIVGISPEDEEPSSVGQKPNESVGDPIEGQSLRDPLQLKFNKKEDTPGA 239
Query: 478 DIDSTELQKIIPVKKVP 494
+ +++ P K++P
Sbjct: 240 GPKDSAVKESCPQKRLP 256
>gnl|CDD|147458 pfam05268, GP38, Phage tail fibre adhesin Gp38. This family
contains several Gp38 proteins from T-even-like phages.
Gp38, together with a second phage protein, gp57,
catalyzes the organisation of gp37 but is absent from
the phage particle. Gp37 is responsible for receptor
recognition.
Length = 261
Score = 30.2 bits (68), Expect = 4.6
Identities = 29/105 (27%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 680 GSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGP--PGGPNGPMGPPGGGPGPNFPPGSG 737
G G N G G P G G G GG N + PGGG G G G
Sbjct: 156 GGGGGASLKNSWRGNGVCGGGGGRPFGAGGKSGSHMSGG-NASLTAPGGGSGTGSAYGGG 214
Query: 738 GPGNFGPNGPRPNFSGGPKGPNFGP-KGPRGPGPNFGPGPNNYGP 781
GN G G R G + G P + YG
Sbjct: 215 NGGNVGAAGGRAWGGNGYEYGGGAAGYAVIGSAPTWQNVGTIYGS 259
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 30.2 bits (68), Expect = 4.9
Identities = 14/70 (20%), Positives = 16/70 (22%), Gaps = 9/70 (12%)
Query: 722 GPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGP 781
P G P + N P P P+F P P
Sbjct: 345 APSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRP----- 399
Query: 782 PNNSGGPPGP 791
GPP P
Sbjct: 400 ----RGPPAP 405
>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation
factor (transactivator). This family includes EBV BRLF1
and similar ORF 50 proteins from other herpesviruses.
Length = 500
Score = 30.5 bits (69), Expect = 4.9
Identities = 18/88 (20%), Positives = 20/88 (22%), Gaps = 5/88 (5%)
Query: 625 GGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGP--GPPMFPPGGPGPNFSGSG 682
RP FP P P PPN G + G + G
Sbjct: 304 DSRPSCFPAPSTTQ-PTFLPPNTNKKAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRG 362
Query: 683 PPGMFPPGGPPNFGPNGPMGPPSGPSGP 710
P G P PSG
Sbjct: 363 RP--SGSGQSPPSNSPLLSSLADTPSGA 388
>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding. This region
tends to appear at the N-terminus of proteins also
containing DNA-binding HMG (high mobility group) boxes
(pfam00505) and appears to bind the armadillo repeat of
CTNNB1 (beta-catenin), forming a stable complex.
Signaling by Wnt through TCF/LCF is involved in
developmental patterning, induction of neural tissues,
cell fate decisions and stem cell differentiation.
Isoforms of HMG T-cell factors lacking the N-terminal
CTNNB1-binding domain cannot fulfill their role as
transcriptional activators in T-cell differentiation.
Length = 200
Score = 29.9 bits (67), Expect = 5.0
Identities = 31/162 (19%), Positives = 41/162 (25%), Gaps = 12/162 (7%)
Query: 586 NSGRIPELEDTVSYIDGEEEWTPQGSGDVDLRGGYPPAMGGRPPGFPG---------PGG 636
N G +L D S + E E + S + R +PP
Sbjct: 34 NVGAERDLADVKSSLVNESESSESSSSEAISRRDHPPRYESYRDKSREKLEDVSHKHQDM 93
Query: 637 PMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFG 696
+ +P P P PN G P + P +
Sbjct: 94 GYYKGPPYSGYPFLMLPNPYLPN--GSLSPLPPSSNKVPVVQPPHHVHPL-TPLITYSNE 150
Query: 697 PNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGG 738
P PP + P G P PP P PG G
Sbjct: 151 HFSPGTPPPHLPYDVDPKTGIPRPPHPPDISPFYPLSPGGVG 192
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent membrane
protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
of EBV is a 62-65 kDa plasma membrane protein possessing
six membrane spanning regions, a short cytoplasmic
N-terminus and a long cytoplasmic carboxy tail of 200
amino acids. EBV latent membrane protein 1 (LMP1) is
essential for EBV-mediated transformation and has been
associated with several cases of malignancies. EBV-like
viruses in Cynomolgus monkeys (Macaca fascicularis) have
been associated with high lymphoma rates in
immunosuppressed monkeys.
Length = 382
Score = 30.4 bits (68), Expect = 5.0
Identities = 34/100 (34%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 725 GGGPGP-----NFPPGSGGPGNFGPNGPRPNFSGGPKGP-NFGPKGPRGPGPNFGPGPNN 778
G G GP N GGP N GP P GP+ P N GP+ P GP +
Sbjct: 230 GAGDGPPLCSQNLGAPGGGPDN-GPQDPDNTDDNGPQDPDNTDDNGPQDPDNTDDNGPQD 288
Query: 779 YGPPNNSGGPPGPNMRDNDDRRGGGGNYNDNSYDNEDGND 818
P+N+ GP DN D G N D+ GND
Sbjct: 289 ---PDNT-ADNGPQDPDNTDDNGPHDPLPHNPSDSA-GND 323
Score = 30.4 bits (68), Expect = 5.2
Identities = 38/148 (25%), Positives = 46/148 (31%), Gaps = 13/148 (8%)
Query: 600 IDGEEEWTPQGSGDVDLRGGYPPAMGGRPPGFPGPGGPMFP-------PGGPPNFPPNFG 652
+ G + P S ++ GG P G + P GP P P P N N
Sbjct: 228 VSGAGDGPPLCSQNLGAPGG-GPDNGPQDPDNTDDNGPQDPDNTDDNGPQDPDNTDDNGP 286
Query: 653 PGPPGPNFPGGPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNF-----GPNGPMGPPSGP 707
P G P GP + GGPP G GPPS
Sbjct: 287 QDPDNTADNGPQDPDNTDDNGPHDPLPHNPSDSAGNDGGPPKLTEEVENKGGDRGPPSMT 346
Query: 708 SGPMGPPGGPNGPMGPPGGGPGPNFPPG 735
G G P P +G G G + P G
Sbjct: 347 DGGGGDPHLPTLLLGTSGSGGDDDDPHG 374
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein. This family of proteins
is greatly expanded in Trichomonas vaginalis. The
proteins are composed of several glycine rich motifs
interspersed through the sequence. Although many
proteins have been annotated by similarity in the family
these annotations given the biased composition of the
sequences these are unlikely to be functionally
relevant.
Length = 248
Score = 29.9 bits (68), Expect = 5.4
Identities = 35/129 (27%), Positives = 40/129 (31%), Gaps = 14/129 (10%)
Query: 714 PGGPNGPMGPPGGGPGPNFPPGSGGPG---NFGPNGP--RPNFSGGPKGPNFGPKGPRGP 768
GG NG G G N GSGG N R +GG G G G
Sbjct: 69 KGGYNGG-GDGGNDNSSNDGSGSGGGATDIRLNENSLKSRIIVAGGGGGSGNYNGGSGGF 127
Query: 769 GPNFGPGPNNYGPPNNSGGPPGPNMRDNDDRRGGGGNYNDNSYDNEDGNDWQGGDDNGWG 828
G G NNS G G G + N G+ GG G+
Sbjct: 128 GGGLV-GGGGTSNGNNSTG-------GTQTSGGEGASSGGNGGFGYGGSGNGGGGGGGYF 179
Query: 829 DGGGQNYQN 837
GGG +Y
Sbjct: 180 GGGGGHYAG 188
>gnl|CDD|218566 pfam05349, GATA-N, GATA-type transcription activator, N-terminal.
GATA transcription factors mediate cell differentiation
in a diverse range of tissues. Mutation are often
associated with certain congenital human disorders. The
six classical vertebrate GATA proteins, GATA-1 to
GATA-6, are highly homologous and have two tandem zinc
fingers. The classical GATA transcription factors
function transcription activators. In lower metazoans
GATA proteins carry a single canonical zinc finger. This
family represents the N-terminal domain of the family of
GATA transcription activators.
Length = 177
Score = 29.4 bits (66), Expect = 6.0
Identities = 19/121 (15%), Positives = 25/121 (20%), Gaps = 15/121 (12%)
Query: 623 AMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNFSGSG 682
A G+ GG + P + P P+ P
Sbjct: 9 ANHGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSL------PYLQGCEASQQAH--- 59
Query: 683 PPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNF 742
P + P P PP G + PP G GP
Sbjct: 60 -----ALAAHPGWSQAAAESSAFNPGSPH-PPVGFSYSHSPPMSNGGGRDAGAYQGPLLL 113
Query: 743 G 743
Sbjct: 114 S 114
Score = 28.6 bits (64), Expect = 9.9
Identities = 18/91 (19%), Positives = 22/91 (24%), Gaps = 2/91 (2%)
Query: 664 PGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGP 723
G + G S + P P P+ P+ P S P
Sbjct: 11 HGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLPYLQGCEASQQAHALAAH--PGWS 68
Query: 724 PGGGPGPNFPPGSGGPGNFGPNGPRPNFSGG 754
F PGS P P S G
Sbjct: 69 QAAAESSAFNPGSPHPPVGFSYSHSPPMSNG 99
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 29.4 bits (66), Expect = 6.0
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 821 GGDDNGWGDGGGQNYQNNERYNNDRNNWEEPRRGRGGGKMRGGKRGRGRGGRGKR 875
GGD+ G+G GGG R GGG G G G GG R
Sbjct: 120 GGDEGGYGGGGGGGGGGYGG----------ESRSGGGGGRASGGGGGGAGGGASR 164
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 30.3 bits (68), Expect = 6.1
Identities = 18/90 (20%), Positives = 23/90 (25%), Gaps = 6/90 (6%)
Query: 704 PSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFG-- 761
+ MG G P P G F G + +G P G F
Sbjct: 620 ELPSTPSMGTQDGSPAPSAAPAGYDIFEFAGDGTGAPHPVASGSNGAQHADPLGDLFSGL 679
Query: 762 PKGPRGPGPNFGPGPNNYGPPNNSGGPPGP 791
P P F + P + PP
Sbjct: 680 PSTVGASSPAFQAASGSQAPAS----PPTA 705
>gnl|CDD|183757 PRK12800, fliF, flagellar MS-ring protein; Reviewed.
Length = 574
Score = 30.0 bits (67), Expect = 6.2
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 635 GGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPG 672
GP PPG N P PP P G PG P G
Sbjct: 312 TGPQGPPGATSNSPGQ----PPAPAAAGAPGTPAAANG 345
>gnl|CDD|136106 PRK06904, PRK06904, replicative DNA helicase; Validated.
Length = 472
Score = 30.0 bits (67), Expect = 6.4
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 95 QRDYRDRRALQPDVMYYPHMLPPPSFEDNAT--NAVTTRFVKAATNKMRCPIFSMT 148
+R YR+ L ++ Y ++ P FEDN T A +R +KA +++ P+ +++
Sbjct: 326 RRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVALS 381
>gnl|CDD|239164 cd02763, MopB_2, The MopB_2 CD includes a group of related
uncharacterized bacterial molybdopterin-binding
oxidoreductase-like domains with a putative N-terminal
iron-sulfur [4Fe-4S] cluster binding site and
molybdopterin cofactor binding site. These members
belong to the molybdopterin_binding (MopB) superfamily
of proteins.
Length = 679
Score = 30.2 bits (68), Expect = 6.4
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 671 PGG--PGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGP 728
PGG P + PP PP P + P P GP P+G P P+ + G P
Sbjct: 334 PGGFRHKPPYPRHIPPLPKPPKIPS---ADKPFTPLYGP--PLGWPASPDDLLVDEDGNP 388
>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function
(DUF1750). This is a fungal domain of unknown function.
Length = 669
Score = 30.0 bits (67), Expect = 6.6
Identities = 12/46 (26%), Positives = 13/46 (28%)
Query: 683 PPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGP 728
M+ P GP G P GPP G P G
Sbjct: 210 GQSMYQPPGPYPNAMVGRQPFYPQPGAVAGPPKRRGGHKAPRGHRA 255
Score = 30.0 bits (67), Expect = 7.4
Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 619 GYPPAMGGRPPGFPGPGGPMFPPGGPPNFPPNFGPGPPGPNFPGGPGPPMFPPGGPGPNF 678
PP M G+ P GP +P P PG P G P G
Sbjct: 203 PLPPQMAGQ--SMYQPPGP-YPNAMVGRQPFYPQPGAVAGP-PKRRGGHKAPRGHRASQA 258
Query: 679 SGS 681
+G
Sbjct: 259 AGQ 261
>gnl|CDD|237810 PRK14764, PRK14764, lipoprotein signal peptidase; Provisional.
Length = 209
Score = 29.2 bits (66), Expect = 6.9
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 699 GPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGPNFPPG 735
P G P P+G P G G G PPG
Sbjct: 1 RPDGMPDEPTGSATPVTGAEEAGGAGGAAAPR--PPG 35
>gnl|CDD|234737 PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Reviewed.
Length = 360
Score = 29.7 bits (68), Expect = 7.9
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 542 PGTKKIADL-----NPDA-IFVHGKVIKVQKGSELAQVIMRGQKELTRYI 585
PG K AD+ NP +FV G+ IK + + + + E+ Y
Sbjct: 311 PGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEEL---EAEIEAYA 357
>gnl|CDD|221759 pfam12764, Gly-rich_Ago1, Glycine-rich region of argonaut. This
domain is often found at the very N-terminal of
argonaut-like proteins.
Length = 102
Score = 28.0 bits (62), Expect = 8.1
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 690 GGPPNFGPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGP 730
GGPP + G GPP G G G G P P
Sbjct: 1 GGPPEYQGRGRGGPPQQGGRGGGGGGRGGGSTGGPPRPSVP 41
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 29.7 bits (68), Expect = 8.9
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 9/35 (25%)
Query: 694 NF---GPNGPMGPPS------GPSGPMGPPGGPNG 719
NF G GP GP S G GPPG P
Sbjct: 155 NFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEE 189
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 29.6 bits (66), Expect = 9.3
Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 717 PNGPMGPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGP 776
P+G P P N S N NG + G G G + P P
Sbjct: 492 PSGGESPNPELPANNNNSNSNNNNN---NGADRKEAAATTGNATTTSN--GSGTSV-PLP 545
Query: 777 NNYGPPNNSGGP 788
+ PP + GP
Sbjct: 546 VSSEPPQHKEGP 557
>gnl|CDD|165528 PHA03270, PHA03270, envelope glycoprotein C; Provisional.
Length = 466
Score = 29.5 bits (66), Expect = 9.3
Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 673 GPGPNFSGSGPPGMFPPGGPPNF--GPNGPMGPPSGPSGPMGPPGGPNGPMGPPGGGPGP 730
G G P G P GP P G P GP P GPP P P
Sbjct: 22 GAGAPRGAVSNASEAPTSGSPGSAEGPRTTPTPTRGKGTPTGPASPP--KSGPPKSPPAP 79
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 29.8 bits (66), Expect = 9.5
Identities = 25/130 (19%), Positives = 30/130 (23%), Gaps = 7/130 (5%)
Query: 663 GPGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPPGG-PNGPM 721
PGP PG SG G G + P + PS P G P
Sbjct: 647 SPGPG---PGTTS-QVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTS 702
Query: 722 GPPGGGPGPNFPPGSGGPGNFGPNGPRPNFSGGPKGPNFGPKGPRGPGPNFGPGPNNYGP 781
GS + P+ F P P P P
Sbjct: 703 TGGKANSTTKETSGSTLMASTSPHTNEGAFRTTPYNATTYL--PPSTSSKLRPRWTFTSP 760
Query: 782 PNNSGGPPGP 791
P + P
Sbjct: 761 PVTTKQATVP 770
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator. Shisa is a
transcription factor-type molecule that physically
interacts with immature forms of the Wnt receptor
Frizzled and the FGF receptor within the endoplasmic
reticulum to inhibit their post-translational maturation
and trafficking to the cell surface.
Length = 177
Score = 28.6 bits (64), Expect = 9.5
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 664 PGPPMFPPGGPGPNFSGSGPPGMFPPGGPPNFGPNGPMGPPSGPSGPMGPP 714
P PP P PGP + G P PP P PP G P GPP
Sbjct: 128 PQPPSTAPSYPGPQYQGYHPM---PPQPGMPAPPYSLQYPPPGLLQPQGPP 175
>gnl|CDD|215809 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.
Length = 454
Score = 29.2 bits (66), Expect = 9.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 216 ATCSDDGTVRVWDFYRCTEEKVLRGHGADVKCVDWHPYKS 255
A D +WD + T KV GH DV C +H YK
Sbjct: 23 AWNEDGKGPSIWDTFCHTPGKVFGGHNGDVACDSYHRYKE 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.139 0.458
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 47,540,571
Number of extensions: 4845049
Number of successful extensions: 8716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5477
Number of HSP's successfully gapped: 706
Length of query: 877
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 772
Effective length of database: 6,280,432
Effective search space: 4848493504
Effective search space used: 4848493504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.3 bits)