Query psy13971
Match_columns 153
No_of_seqs 102 out of 1042
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 16:17:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0863|consensus 100.0 7.6E-37 1.7E-41 254.4 6.6 124 1-151 1-133 (264)
2 KOG0183|consensus 100.0 5.8E-34 1.3E-38 235.4 4.4 122 4-150 2-132 (249)
3 KOG0178|consensus 100.0 3E-33 6.6E-38 230.8 5.8 124 3-151 2-135 (249)
4 KOG0184|consensus 100.0 1.7E-32 3.8E-37 227.4 7.5 125 3-152 5-136 (254)
5 KOG0176|consensus 100.0 6.2E-33 1.4E-37 227.5 4.7 124 3-151 5-142 (241)
6 cd03750 proteasome_alpha_type_ 100.0 1E-31 2.2E-36 218.0 9.6 120 6-150 1-129 (227)
7 cd03752 proteasome_alpha_type_ 100.0 1.6E-31 3.4E-36 214.8 9.7 123 4-151 1-133 (213)
8 cd03751 proteasome_alpha_type_ 100.0 1.5E-31 3.2E-36 216.3 9.4 122 4-150 2-132 (212)
9 PTZ00246 proteasome subunit al 100.0 2.3E-31 4.9E-36 219.3 9.9 124 1-150 1-134 (253)
10 cd03754 proteasome_alpha_type_ 100.0 2.6E-31 5.7E-36 214.7 9.6 121 5-150 1-131 (215)
11 cd03755 proteasome_alpha_type_ 100.0 4.9E-31 1.1E-35 211.1 9.5 120 6-150 1-129 (207)
12 cd03749 proteasome_alpha_type_ 100.0 7.4E-31 1.6E-35 211.2 9.3 118 6-150 1-127 (211)
13 PRK03996 proteasome subunit al 100.0 8E-30 1.7E-34 208.2 9.7 124 2-150 6-138 (241)
14 cd03756 proteasome_alpha_arche 100.0 2.7E-29 5.8E-34 201.3 9.4 121 5-150 1-130 (211)
15 KOG0182|consensus 100.0 1E-29 2.2E-34 209.9 6.7 125 2-151 5-139 (246)
16 TIGR03633 arc_protsome_A prote 100.0 3.5E-29 7.5E-34 202.2 9.6 122 4-150 1-131 (224)
17 cd03753 proteasome_alpha_type_ 100.0 8.8E-29 1.9E-33 198.5 9.1 120 6-150 1-134 (213)
18 cd01911 proteasome_alpha prote 99.9 8.2E-28 1.8E-32 192.1 8.5 120 6-150 1-129 (209)
19 KOG0181|consensus 99.9 1.8E-28 3.9E-33 200.8 3.7 126 1-151 1-135 (233)
20 COG0638 PRE1 20S proteasome, a 99.9 3.6E-27 7.8E-32 194.3 8.9 121 4-151 1-132 (236)
21 TIGR03691 20S_bact_alpha prote 99.7 3.5E-17 7.6E-22 134.7 8.7 95 22-151 17-123 (228)
22 cd03760 proteasome_beta_type_4 99.6 5.5E-15 1.2E-19 117.4 6.4 94 32-150 2-104 (197)
23 PF10584 Proteasome_A_N: Prote 99.6 1.6E-15 3.4E-20 85.8 2.1 23 6-28 1-23 (23)
24 PF00227 Proteasome: Proteasom 99.5 9E-15 2E-19 113.3 6.4 97 29-150 1-108 (190)
25 cd03759 proteasome_beta_type_3 99.5 2.6E-14 5.7E-19 113.5 6.2 66 31-121 2-68 (195)
26 cd03758 proteasome_beta_type_2 99.5 6.3E-14 1.4E-18 111.4 6.3 64 33-121 2-66 (193)
27 TIGR03690 20S_bact_beta protea 99.5 4.7E-14 1E-18 114.4 5.6 66 31-121 1-67 (219)
28 cd03757 proteasome_beta_type_1 99.4 1.7E-13 3.7E-18 110.5 6.0 68 29-121 5-73 (212)
29 cd03761 proteasome_beta_type_5 99.4 2.1E-13 4.6E-18 107.8 6.1 64 33-121 1-65 (188)
30 PTZ00488 Proteasome subunit be 99.4 2.7E-13 5.8E-18 112.9 6.1 94 28-150 35-136 (247)
31 TIGR03634 arc_protsome_B prote 99.4 1.1E-12 2.3E-17 102.7 7.1 65 32-121 1-66 (185)
32 cd01906 proteasome_protease_Hs 99.4 2E-12 4.3E-17 99.5 7.2 64 33-121 1-65 (182)
33 cd01912 proteasome_beta protea 99.3 2.4E-12 5.1E-17 100.5 6.2 64 33-121 1-65 (189)
34 cd03765 proteasome_beta_bacter 99.3 2.7E-12 5.8E-17 106.8 6.3 55 65-121 10-68 (236)
35 cd03762 proteasome_beta_type_6 99.3 3.8E-12 8.3E-17 99.9 6.0 64 33-121 1-65 (188)
36 cd03764 proteasome_beta_archea 99.3 6.5E-12 1.4E-16 98.7 7.0 64 33-121 1-65 (188)
37 cd03763 proteasome_beta_type_7 99.2 1.3E-11 2.9E-16 97.3 5.9 64 33-121 1-65 (189)
38 PRK05456 ATP-dependent proteas 98.9 3.7E-09 8.1E-14 84.3 7.3 67 32-122 1-68 (172)
39 cd01901 Ntn_hydrolase The Ntn 98.9 8.3E-09 1.8E-13 75.5 7.1 54 65-120 10-64 (164)
40 cd01913 protease_HslV Protease 98.8 1.6E-08 3.4E-13 81.2 6.9 66 33-122 1-67 (171)
41 TIGR03692 ATP_dep_HslV ATP-dep 98.8 2.4E-08 5.3E-13 80.0 7.0 66 33-122 1-67 (171)
42 KOG0179|consensus 98.4 6.2E-07 1.3E-11 74.9 5.8 68 30-121 27-94 (235)
43 KOG0180|consensus 97.9 2E-05 4.2E-10 64.6 5.1 62 31-117 7-69 (204)
44 KOG0185|consensus 97.6 0.00014 3E-09 61.7 5.7 83 9-117 12-102 (256)
45 KOG0177|consensus 97.5 0.00013 2.7E-09 60.2 4.0 86 65-151 11-103 (200)
46 KOG0173|consensus 97.2 0.00044 9.6E-09 59.2 4.3 62 28-113 33-94 (271)
47 KOG0174|consensus 97.0 0.0012 2.5E-08 55.1 5.0 65 28-117 15-80 (224)
48 KOG0175|consensus 96.9 0.0018 3.9E-08 55.7 5.2 65 30-119 69-134 (285)
49 COG5405 HslV ATP-dependent pro 90.9 0.25 5.4E-06 40.3 3.2 62 31-119 3-68 (178)
50 smart00481 POLIIIAc DNA polyme 53.8 17 0.00037 23.6 2.9 31 11-41 6-37 (67)
51 PF02811 PHP: PHP domain; Int 34.4 35 0.00075 25.1 2.3 30 12-41 8-38 (175)
52 PF07676 PD40: WD40-like Beta 30.4 26 0.00057 20.2 0.9 10 10-19 13-22 (39)
53 COG4831 Roadblock/LC7 domain [ 30.3 22 0.00048 26.9 0.6 27 90-116 81-107 (109)
54 PRK07328 histidinol-phosphatas 28.5 73 0.0016 26.4 3.5 40 1-41 1-40 (269)
55 COG1387 HIS2 Histidinol phosph 27.8 63 0.0014 26.7 3.0 30 11-41 9-38 (237)
56 COG4728 Uncharacterized protei 24.1 75 0.0016 24.4 2.5 33 88-120 8-40 (124)
57 PRK06361 hypothetical protein; 24.0 89 0.0019 24.6 3.1 30 11-41 3-32 (212)
58 COG1111 MPH1 ERCC4-like helica 23.7 18 0.00038 34.3 -1.1 81 16-109 15-100 (542)
59 PF08261 Carcinustatin: Carcin 22.1 41 0.00088 14.6 0.4 7 144-150 2-8 (8)
60 PRK00912 ribonuclease P protei 21.7 1E+02 0.0023 24.9 3.1 36 5-41 3-38 (237)
61 TIGR01856 hisJ_fam histidinol 20.5 1.1E+02 0.0023 25.2 3.0 35 7-42 4-38 (253)
62 PRK08123 histidinol-phosphatas 20.3 1.4E+02 0.0031 24.8 3.7 40 1-41 1-41 (270)
No 1
>KOG0863|consensus
Probab=100.00 E-value=7.6e-37 Score=254.39 Aligned_cols=124 Identities=27% Similarity=0.350 Sum_probs=116.7
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
||+++||.++|+|||+|||+||||||||+++|+++||++++ ++.||++.|| ..++
T Consensus 1 Mfrnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~-----------------------thaVLvAl~r--~~se 55 (264)
T KOG0863|consen 1 MFRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSR-----------------------THAVLVALKR--AQSE 55 (264)
T ss_pred CCcccccCceeEECCcceehHHHHHHHHHhcccceEeeccc-----------------------ceEEEeeecc--chhH
Confidence 99999999999999999999999999999999999999999 9999999999 7788
Q ss_pred cccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC---------ceeeeeeeccchhhhhhhhcCCCCccceee
Q psy13971 81 LLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK---------TISVIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 81 Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~---------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
|. .++.|||+||+|+++++||+++|++.|++|+|.||.. |+..+..-+.++.|..||+.|+|||||||.
T Consensus 56 Ls--s~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGll 133 (264)
T KOG0863|consen 56 LS--SHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLL 133 (264)
T ss_pred HH--HhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEE
Confidence 86 6889999999999999999999999999999999975 344567779999999999999999999986
No 2
>KOG0183|consensus
Probab=100.00 E-value=5.8e-34 Score=235.35 Aligned_cols=122 Identities=46% Similarity=0.533 Sum_probs=108.5
Q ss_pred CCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc
Q psy13971 4 SRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS 83 (153)
Q Consensus 4 ~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~ 83 (153)
++||+.+|+|||||||+|||||+|||++|+|+||++++ |+|||.+||| ...+|.+
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~-----------------------~~vvlgvEkk--Sv~~Lq~ 56 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGN-----------------------NCVVLGVEKK--SVPKLQD 56 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccC-----------------------ceEEEEEeec--chhhhhh
Confidence 58999999999999999999999999999999999999 9999999999 7889999
Q ss_pred ccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceeeeee--eccchhhhhhhhcCCCCcccee
Q psy13971 84 QAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISVIYY--GGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 84 ~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v~~~--~~~~~~q~~t~~~~~rp~~~gi 150 (153)
.+...||.++|||++|+|||+.+|+|.|++++|-||+. |+.+-+. .++.-+|..||..++||||++.
T Consensus 57 ~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~ 132 (249)
T KOG0183|consen 57 ERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVST 132 (249)
T ss_pred hhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceE
Confidence 99999999999999999999999999999999999986 3333333 2566677778888877776653
No 3
>KOG0178|consensus
Probab=99.98 E-value=3e-33 Score=230.81 Aligned_cols=124 Identities=27% Similarity=0.270 Sum_probs=116.2
Q ss_pred CCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcc
Q psy13971 3 SSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLL 82 (153)
Q Consensus 3 ~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll 82 (153)
+++||.+.|+|||||||+||||||||+.+.+|+||+.++ |||||++|+| .+++|+
T Consensus 2 sr~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~-----------------------DGvvLa~e~k--~t~kll 56 (249)
T KOG0178|consen 2 SRRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILAS-----------------------DGVVLAGENK--VTSKLL 56 (249)
T ss_pred CcCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEec-----------------------CceEEEeecc--cchhhh
Confidence 469999999999999999999999999999999999999 9999999999 899999
Q ss_pred ccc-ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC---------ceeeeeeeccchhhhhhhhcCCCCccceee
Q psy13971 83 SQA-QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK---------TISVIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 83 ~~~-~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~---------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
++. ..+||++|||||.|+++|+++|++.|++++|-.++. |++-++..+++.+|-.||..+.||+||+..
T Consensus 57 ~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfL 135 (249)
T KOG0178|consen 57 DTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFL 135 (249)
T ss_pred hccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeee
Confidence 884 789999999999999999999999999999998875 555678889999999999999999999864
No 4
>KOG0184|consensus
Probab=99.97 E-value=1.7e-32 Score=227.39 Aligned_cols=125 Identities=26% Similarity=0.336 Sum_probs=111.8
Q ss_pred CCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcc
Q psy13971 3 SSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLL 82 (153)
Q Consensus 3 ~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll 82 (153)
.++||...++||||||+||||||+|||++++|+|||+|+ |||||++||- .+|||+
T Consensus 5 GtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~k-----------------------dGVVl~vEKl--i~SkLy 59 (254)
T KOG0184|consen 5 GTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCK-----------------------DGVVLAVEKL--ITSKLY 59 (254)
T ss_pred cccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecC-----------------------CeEEEEEeee--eccccc
Confidence 378999999999999999999999999999999999999 9999999998 899999
Q ss_pred cccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceeeeeeeccchhhhhhhhcCCCCccceeec
Q psy13971 83 SQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISVIYYGGKNSSALATELFLRPPRDLGIRA 152 (153)
Q Consensus 83 ~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi~~ 152 (153)
.++.++|||.|++||+|+++|+.+|++.|++++|.|+.+ |+|..........+++..+.|..-||||..+
T Consensus 60 ~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~ 136 (254)
T KOG0184|consen 60 EPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGAST 136 (254)
T ss_pred ccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceE
Confidence 999999999999999999999999999999999999974 5666566666677777777776666666544
No 5
>KOG0176|consensus
Probab=99.97 E-value=6.2e-33 Score=227.52 Aligned_cols=124 Identities=29% Similarity=0.397 Sum_probs=107.6
Q ss_pred CCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcc
Q psy13971 3 SSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLL 82 (153)
Q Consensus 3 ~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll 82 (153)
++.||+.+++|||||||||||||+||++.|+|+|||+.+ +||||++||| .+|||+
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~Tk-----------------------EgVvL~vEKr--itSpLm 59 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTK-----------------------EGVVLAVEKR--ITSPLM 59 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHhcCCceeeeecc-----------------------ceEEEEEecc--ccCccc
Confidence 678999999999999999999999999999999999999 9999999999 999999
Q ss_pred cccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcCce----------eeeeeeccchhhhh----hhhcCCCCccc
Q psy13971 83 SQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDKTI----------SVIYYGGKNSSALA----TELFLRPPRDL 148 (153)
Q Consensus 83 ~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~~~----------~v~~~~~~~~~q~~----t~~~~~rp~~~ 148 (153)
++...+||+.||+||+|+++|+.+|++.|++++|-||+++. ++.+.......||. ...+-+||+||
T Consensus 60 ~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGV 139 (241)
T KOG0176|consen 60 EPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGV 139 (241)
T ss_pred CchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcce
Confidence 99999999999999999999999999999999999999732 22222222233333 34667899999
Q ss_pred eee
Q psy13971 149 GIR 151 (153)
Q Consensus 149 gi~ 151 (153)
.|.
T Consensus 140 all 142 (241)
T KOG0176|consen 140 ALL 142 (241)
T ss_pred EEE
Confidence 874
No 6
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1e-31 Score=217.97 Aligned_cols=120 Identities=25% Similarity=0.324 Sum_probs=107.1
Q ss_pred CCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccccc
Q psy13971 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQA 85 (153)
Q Consensus 6 Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~ 85 (153)
||+++|+|||||||+|||||++|+++|+|+|||+++ |||||+++++ .++++..++
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~-----------------------dgVvlaad~~--~~~~l~~~~ 55 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAA-----------------------NGVVLATEKK--VPSPLIDES 55 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeC-----------------------CEEEEEEeec--CCccccCCC
Confidence 899999999999999999999999999999999999 9999999999 668888878
Q ss_pred ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------c--eeeeeeeccchhhhhhhhcCCCCcccee
Q psy13971 86 QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------T--ISVIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 86 ~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~--~~v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
..+|||+||+|++++++|+.+|++.|++++|.+++. + +..+...+++.+|..+++.+.||+++++
T Consensus 56 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~ 129 (227)
T cd03750 56 SVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSL 129 (227)
T ss_pred CcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEE
Confidence 899999999999999999999999999999998874 2 2334445666678888888889998875
No 7
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.6e-31 Score=214.75 Aligned_cols=123 Identities=28% Similarity=0.304 Sum_probs=105.3
Q ss_pred CCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc
Q psy13971 4 SRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS 83 (153)
Q Consensus 4 ~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~ 83 (153)
++||+++|+|||||||+|||||+||+++|+|+||++++ +|||||++++ .+++++.
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~-----------------------dgVvla~d~r--~~~~~~~ 55 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAK-----------------------DGIVLAAEKK--VTSKLLD 55 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeC-----------------------CEEEEEEEec--cCCcccC
Confidence 48999999999999999999999999999999999999 9999999999 7778776
Q ss_pred cc-ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceeeeeee--ccchhhhhhhhcCCCCccceee
Q psy13971 84 QA-QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISVIYYG--GKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 84 ~~-~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v~~~~--~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
.. ..+|||+|++||+++++|+.+|++.+++++|.++.. ++++.... +...+|..||..+.||+++++.
T Consensus 56 ~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~l 133 (213)
T cd03752 56 QSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFL 133 (213)
T ss_pred CCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEE
Confidence 54 889999999999999999999999999999998864 33333222 3344667777778888887763
No 8
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.5e-31 Score=216.27 Aligned_cols=122 Identities=26% Similarity=0.304 Sum_probs=107.1
Q ss_pred CCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc
Q psy13971 4 SRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS 83 (153)
Q Consensus 4 ~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~ 83 (153)
++||+++|+|||||||+|||||+||+++|+|+|||+++ ||||||++++ .+++++.
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~k-----------------------dgVvla~d~r--~~~~~~~ 56 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCK-----------------------DGVVLAVEKL--VTSKLYE 56 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeC-----------------------CEEEEEEEcc--ccccccC
Confidence 68999999999999999999999999999999999999 9999999999 6778887
Q ss_pred ccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------cee--eeeeeccchhhhhhhhcCCCCcccee
Q psy13971 84 QAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TIS--VIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 84 ~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~--v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
.+..+|||+||+|++++++|+.+|++.|++++|.++.. +++ .+...+++.+|..++..+.||+++.+
T Consensus 57 ~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~ 132 (212)
T cd03751 57 PGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSV 132 (212)
T ss_pred cchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEE
Confidence 77889999999999999999999999999999988854 222 23334566778888888888887765
No 9
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.97 E-value=2.3e-31 Score=219.31 Aligned_cols=124 Identities=27% Similarity=0.297 Sum_probs=106.3
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
|++ +||+++|+|||||||+|||||+||+++|+|+|||+++ ||||||++++ ..++
T Consensus 1 ~~~-~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~-----------------------dgVvlaad~r--~s~~ 54 (253)
T PTZ00246 1 MSR-RYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCK-----------------------EGVILGADKP--ISSK 54 (253)
T ss_pred CCC-ccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEEC-----------------------CEEEEEEecC--CCCc
Confidence 544 8999999999999999999999999999999999999 9999999999 7778
Q ss_pred ccccc-ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 81 LLSQA-QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 81 Ll~~~-~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
++... ..+|||+|++||+++++|+.+|.+.|++++|.++.. ++++ +...+...+|..+|..+.||+++++
T Consensus 55 ~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~ 134 (253)
T PTZ00246 55 LLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSF 134 (253)
T ss_pred CccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEE
Confidence 77665 579999999999999999999999999999987763 2333 3333455677778888888888775
No 10
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.6e-31 Score=214.65 Aligned_cols=121 Identities=24% Similarity=0.302 Sum_probs=105.3
Q ss_pred CCCCcceeeCCCCcchhhHHHHHHHhc-CCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc
Q psy13971 5 RYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS 83 (153)
Q Consensus 5 ~Yd~~~t~FsP~Grl~QvEYA~eAv~~-G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~ 83 (153)
+||+++++|||||||+|||||+||+++ |+|+||++++ ||||||+++| ..++++.
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~-----------------------d~Vvlaad~r--~~~~~i~ 55 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGK-----------------------DCAVVVTQKK--VPDKLID 55 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeC-----------------------CEEEEEEecc--ccccccC
Confidence 699999999999999999999999986 7799999999 9999999999 6777776
Q ss_pred ccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 84 QAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 84 ~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
.+..+|||+||+||+++++|+.+|++.|++++|.++.. ++++ +..-+++.+|..|++.+.||+++++
T Consensus 56 ~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ 131 (215)
T cd03754 56 PSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSM 131 (215)
T ss_pred CcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEE
Confidence 66889999999999999999999999999999998864 2333 3333455678889998889988875
No 11
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=4.9e-31 Score=211.12 Aligned_cols=120 Identities=40% Similarity=0.450 Sum_probs=105.6
Q ss_pred CCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccccc
Q psy13971 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQA 85 (153)
Q Consensus 6 Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~ 85 (153)
||+++|+|||||||+|||||+||+++|+|+||++++ ||||||++++ ..+++.+.+
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~-----------------------dgVvlaad~~--~~~~~~~~~ 55 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGK-----------------------DCVVLGVEKK--SVAKLQDPR 55 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeC-----------------------CEEEEEEecC--CCCcccCCC
Confidence 899999999999999999999999999999999999 9999999998 677787777
Q ss_pred ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ce--eeeeeeccchhhhhhhhcCCCCcccee
Q psy13971 86 QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TI--SVIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 86 ~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~--~v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
..+|||+|++|++++++|+.+|.+.|++++|.++.. ++ ..+...+++..|..+++.+.||+++++
T Consensus 56 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ 129 (207)
T cd03755 56 TVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGIST 129 (207)
T ss_pred ccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEE
Confidence 899999999999999999999999999999998863 22 223344566677788888899998875
No 12
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=7.4e-31 Score=211.20 Aligned_cols=118 Identities=29% Similarity=0.397 Sum_probs=103.0
Q ss_pred CCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccccc
Q psy13971 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQA 85 (153)
Q Consensus 6 Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~ 85 (153)
||+++|+|||||||+|||||+||+++|+|+|||+++ ||||||++++ ..+++. .
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~-----------------------dgVvlaad~r--~~~~l~--~ 53 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSK-----------------------THAVLVALKR--ATSELS--S 53 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeC-----------------------CEEEEEEecc--CccccC--C
Confidence 899999999999999999999999999999999999 9999999999 677754 4
Q ss_pred ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------cee--eeeeeccchhhhhhhhcCCCCcccee
Q psy13971 86 QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TIS--VIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 86 ~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~--v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
..+|||+|++||+++++|+.+|.+.|++++|.++.. +++ .+...+.+..|..||..+.||+++++
T Consensus 54 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ 127 (211)
T cd03749 54 YQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGL 127 (211)
T ss_pred ccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 569999999999999999999999999999998863 223 23344556678888988999998875
No 13
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.96 E-value=8e-30 Score=208.22 Aligned_cols=124 Identities=32% Similarity=0.381 Sum_probs=107.5
Q ss_pred CCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCc
Q psy13971 2 SSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPL 81 (153)
Q Consensus 2 ~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~L 81 (153)
+.++||.++++|||||||+|||||+||+++|+|+|||+++ ||||||++++ .++++
T Consensus 6 ~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~-----------------------dgVvlaad~r--~~~~~ 60 (241)
T PRK03996 6 QQMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTK-----------------------DGVVLAVDKR--ITSPL 60 (241)
T ss_pred cccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeC-----------------------CEEEEEEecc--CCCcc
Confidence 3689999999999999999999999999999999999999 9999999999 67888
Q ss_pred ccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 82 LSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 82 l~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
...+..+|||.|++|++++++|+.+|.+.+++++|.++.. ++++ +...+++..|..+|+.+.||+++++
T Consensus 61 ~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ 138 (241)
T PRK03996 61 IEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVAL 138 (241)
T ss_pred cCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEE
Confidence 8778899999999999999999999999999999988863 2333 3333455566677887888888765
No 14
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=2.7e-29 Score=201.28 Aligned_cols=121 Identities=32% Similarity=0.359 Sum_probs=103.2
Q ss_pred CCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccc
Q psy13971 5 RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQ 84 (153)
Q Consensus 5 ~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~ 84 (153)
+||.++|+|||||||+|+|||+||+++|+|+||++++ +|||||++++ .++++...
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~-----------------------dgvvla~d~~--~~~~~~~~ 55 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCK-----------------------EGVVLAVDKR--ITSKLVEP 55 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEEC-----------------------CEEEEEEecc--CCCcccCC
Confidence 6999999999999999999999999999999999999 9999999999 66787777
Q ss_pred cccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 85 AQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 85 ~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
+..+|||.|++|++++++|+.+|.+.+++++|.++.. .+++ +...+++..|..++..+.||+++.+
T Consensus 56 ~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ 130 (211)
T cd03756 56 ESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVAL 130 (211)
T ss_pred CccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEE
Confidence 7889999999999999999999999999999987753 2232 3333444556667777788887764
No 15
>KOG0182|consensus
Probab=99.96 E-value=1e-29 Score=209.93 Aligned_cols=125 Identities=24% Similarity=0.282 Sum_probs=119.1
Q ss_pred CCCCCCCcceeeCCCCcchhhHHHHHHHhc-CCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 2 SSSRYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 2 ~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~-G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
++.+||+++|+|||||||||||||+||+|+ |-|+|+++++ |++|+++.|+ .+.+
T Consensus 5 s~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgk-----------------------DcavvvsqKk--vpDK 59 (246)
T KOG0182|consen 5 SSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGK-----------------------DCAVVVTQKK--VPDK 59 (246)
T ss_pred CcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCC-----------------------ceEEEEeccc--Cccc
Confidence 478999999999999999999999999999 8899999999 9999999999 9999
Q ss_pred cccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC---------ceeeeeeeccchhhhhhhhcCCCCccceee
Q psy13971 81 LLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK---------TISVIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 81 Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~---------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
|+++++.+.+|+|+.+|+|+++|+.+|++..+.++|.||-+ |+.+++...++..|+.||....||.||...
T Consensus 60 Lld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~ 139 (246)
T KOG0182|consen 60 LLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAAT 139 (246)
T ss_pred ccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEE
Confidence 99999999999999999999999999999999999999975 788999999999999999999999998754
No 16
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.96 E-value=3.5e-29 Score=202.23 Aligned_cols=122 Identities=32% Similarity=0.355 Sum_probs=104.0
Q ss_pred CCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc
Q psy13971 4 SRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS 83 (153)
Q Consensus 4 ~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~ 83 (153)
.+||.++++|||||||+|||||+||+++|+|+||++++ +|||||++++ .++++..
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~-----------------------dgvvlaad~r--~~~~~~~ 55 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTK-----------------------DGVVLAVDKR--ITSKLVE 55 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEEC-----------------------CEEEEEEecc--CCccccC
Confidence 37999999999999999999999999999999999999 9999999999 6678877
Q ss_pred ccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 84 QAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 84 ~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
.+..+|||.|++|++++++|..+|.+.|++++|.++.. .+++ +..-+.+..|..+|..+.||+++++
T Consensus 56 ~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ 131 (224)
T TIGR03633 56 PSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVAL 131 (224)
T ss_pred CCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEE
Confidence 78889999999999999999999999999999887752 2222 2222445556677777888888765
No 17
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=8.8e-29 Score=198.53 Aligned_cols=120 Identities=28% Similarity=0.390 Sum_probs=100.8
Q ss_pred CCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccccc
Q psy13971 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQA 85 (153)
Q Consensus 6 Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~ 85 (153)
||+++|+|||||||+|||||++|+++|+|+||++++ ||||||++++ .+++++...
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~-----------------------dgVvlaad~r--~~~~~~~~~ 55 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTK-----------------------EGVVLAVEKR--ITSPLMEPS 55 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeC-----------------------CEEEEEEecc--cCCcCcCCC
Confidence 899999999999999999999999999999999999 9999999999 667777767
Q ss_pred ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------cee--eeeeeccchhhhhhhhc-----CCCCcccee
Q psy13971 86 QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TIS--VIYYGGKNSSALATELF-----LRPPRDLGI 150 (153)
Q Consensus 86 ~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~--v~~~~~~~~~q~~t~~~-----~~rp~~~gi 150 (153)
..+|||.|++|++++++|..+|.+.+++++|.|++. .++ .+...+++.+|.+++.. ..||+++++
T Consensus 56 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ 134 (213)
T cd03753 56 SVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVAL 134 (213)
T ss_pred ccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEE
Confidence 889999999999999999999999999999998863 222 23333566666666654 246766654
No 18
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.95 E-value=8.2e-28 Score=192.15 Aligned_cols=120 Identities=34% Similarity=0.400 Sum_probs=100.6
Q ss_pred CCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccccc
Q psy13971 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQA 85 (153)
Q Consensus 6 Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~ 85 (153)
||.++|+|||||||+|||||+||+++|+|+||++++ ||||||++++ .+..++..+
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~-----------------------dgVvlaaD~~--~~~~~~~~~ 55 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGK-----------------------DGVVLAVEKK--VTSKLLDPS 55 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEEC-----------------------CEEEEEEEec--CCccccCCc
Confidence 899999999999999999999999999999999999 9999999999 666666567
Q ss_pred ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 86 QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 86 ~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
..+|||+|++|++++++|..+|.+.+.++++.++.. .+++ +...+.+..|..+++.+.||+++.+
T Consensus 56 ~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ 129 (209)
T cd01911 56 SVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSL 129 (209)
T ss_pred ccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheE
Confidence 889999999999999999999999999999987753 2222 2222444456667777888887754
No 19
>KOG0181|consensus
Probab=99.94 E-value=1.8e-28 Score=200.78 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=114.0
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
|...+|..++|+|||+|+|-|+|||+.||.+|.+.||+++. ||||||.||| ..|+
T Consensus 1 m~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~-----------------------nGvVlatekk--~~s~ 55 (233)
T KOG0181|consen 1 MGDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAA-----------------------NGVVLATEKK--DVSP 55 (233)
T ss_pred CCCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeec-----------------------CceEEEeccC--CCCc
Confidence 66679999999999999999999999999999999999999 9999999999 8999
Q ss_pred cccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCccceee
Q psy13971 81 LLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 81 Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
|.+.+..+||++|.+||+|.++|+.+|.|.|++..|..|+. ++++ ++...+--||..||..+-||+|+.+.
T Consensus 56 L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvsll 135 (233)
T KOG0181|consen 56 LVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLL 135 (233)
T ss_pred cchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEE
Confidence 99999999999999999999999999999999999887753 4444 45557778899999999999998764
No 20
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.6e-27 Score=194.28 Aligned_cols=121 Identities=34% Similarity=0.413 Sum_probs=103.1
Q ss_pred CCCCCcceeeCCCCcchhhHHHHHHHhcC-CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcc
Q psy13971 4 SRYDRAITVFSPDGHLLQVEYAQEAVRKG-STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLL 82 (153)
Q Consensus 4 ~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G-~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll 82 (153)
.+||+.+++|||+|+++|+|||++|+++| .|+||++++ ||||||++|| .+++++
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~-----------------------dgVVlaadkr--~t~~~~ 55 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGK-----------------------DGVVLAADKR--ATSGLL 55 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEec-----------------------CEEEEEEecc--CCCCce
Confidence 47999999999999999999999999986 999999999 9999999999 888876
Q ss_pred ccc-ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------cee--eeeeeccchhhhhhhhcCCCCccceee
Q psy13971 83 SQA-QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TIS--VIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 83 ~~~-~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~--v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
... ..+|||+|+|||+|++||+.+|++.|++++|.|+.. +++ .+..-+++.+|..+|. .|||+|++.
T Consensus 56 ~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~i 132 (236)
T COG0638 56 IASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLL 132 (236)
T ss_pred ecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEE
Confidence 665 599999999999999999999999999999987753 333 3444455556655555 899998863
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.71 E-value=3.5e-17 Score=134.69 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=76.9
Q ss_pred hHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccccccCceEEecCcEEEEE
Q psy13971 22 VEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAF 101 (153)
Q Consensus 22 vEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~~~~KIf~I~~~i~~~~ 101 (153)
=|||+||+++|.|+|||+++ |||||+++|+ . ...+|||.|||||+|++
T Consensus 17 ~EYA~kav~~g~T~VGIk~k-----------------------dgVVLaaek~--~-------~~~~KI~~I~d~ig~~~ 64 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYA-----------------------DGILFVAENP--S-------RSLHKISELYDRIGFAA 64 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeC-----------------------CeEEEEEecC--C-------CCcCcEEEecCCEEEEE
Confidence 49999999999999999999 9999999997 2 35789999999999999
Q ss_pred eccHHHHHHHHHHHHhhhcCc------eeeeeeeccchhhhhhhhcC------CCCccceee
Q psy13971 102 AGKSLCLIALVALWYNEKDKT------ISVIYYGGKNSSALATELFL------RPPRDLGIR 151 (153)
Q Consensus 102 aG~~~D~~~Lv~~~r~ea~~~------~~v~~~~~~~~~q~~t~~~~------~rp~~~gi~ 151 (153)
+|+.+|++.|++++|.++... .++.. ...++..+|..+ .||+++++.
T Consensus 65 sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v---~~la~~~tq~~~~~~~~~~RP~gvs~L 123 (228)
T TIGR03691 65 VGKYNEFENLRRAGIRYADMRGYSYDRRDVTG---RGLANAYAQTLGTIFTEQQKPYEVEIC 123 (228)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCCccH---HHHHHHHHhhcccccccccCcceEEEE
Confidence 999999999999999988652 12222 223356677664 577777653
No 22
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.56 E-value=5.5e-15 Score=117.41 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=77.7
Q ss_pred CCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCC-CCcccccccCceEEecCcEEEEEeccHHHHHH
Q psy13971 32 GSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKV-SPLLSQAQNSKLSMLNDHVVMAFAGKSLCLIA 110 (153)
Q Consensus 32 G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~-s~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~ 110 (153)
|+|+|||+++ ||||||++++ .. ++++.++..+|||.||+|++++++|+.+|++.
T Consensus 2 G~T~igi~~k-----------------------dgVvlaad~r--~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 56 (197)
T cd03760 2 GTSVIAIKYK-----------------------DGVIIAADTL--GSYGSLARFKNVERIFKVGDNTLLGASGDYADFQY 56 (197)
T ss_pred CceEEEEEeC-----------------------CcEEEEEcCc--ccccceeecCCCCcEEEecCcEEEEeCcchHHHHH
Confidence 7899999999 9999999999 55 68888888999999999999999999999999
Q ss_pred HHHHHHhhhc-C-------ceeeeeeeccchhhhhhhhcCCCCcccee
Q psy13971 111 LVALWYNEKD-K-------TISVIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 111 Lv~~~r~ea~-~-------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
|++++|.++. . ++++..+....+....+|+.+.||+++++
T Consensus 57 l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~y~~~~~~rP~~v~~ 104 (197)
T cd03760 57 LKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTL 104 (197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 9999998764 1 34444444444445678888888888876
No 23
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.56 E-value=1.6e-15 Score=85.80 Aligned_cols=23 Identities=74% Similarity=1.187 Sum_probs=22.5
Q ss_pred CCCcceeeCCCCcchhhHHHHHH
Q psy13971 6 YDRAITVFSPDGHLLQVEYAQEA 28 (153)
Q Consensus 6 Yd~~~t~FsP~Grl~QvEYA~eA 28 (153)
||+++++|||||||+|||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999997
No 24
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.55 E-value=9e-15 Score=113.25 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=78.8
Q ss_pred HhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCC--CCcccccccCceEEecCcEEEEEeccHH
Q psy13971 29 VRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKV--SPLLSQAQNSKLSMLNDHVVMAFAGKSL 106 (153)
Q Consensus 29 v~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~--s~Ll~~~~~~KIf~I~~~i~~~~aG~~~ 106 (153)
|++|+|+||++++ ||||||++++ .+ +.+..+...+|||+|++||+++++|..+
T Consensus 1 v~~G~t~vgi~~~-----------------------dgvvla~d~~--~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~ 55 (190)
T PF00227_consen 1 VNNGTTVVGIKGK-----------------------DGVVLAADKR--ISYGSKLRSPNTVDKIFKINDNIIIGFSGLTA 55 (190)
T ss_dssp HHTSBEEEEEEES-----------------------SEEEEEEEEE--EEETTEEEESSTSSSEEEEETTEEEEEEESHH
T ss_pred CCCCeEEEEEEEC-----------------------CEEEEEEccc--cccccccccccccceeeeccCcceeecccccc
Confidence 6899999999999 9999999998 55 5666666679999999999999999999
Q ss_pred HHHHHHHHHHhhhcC-------cee--eeeeeccchhhhhhhhcCCCCcccee
Q psy13971 107 CLIALVALWYNEKDK-------TIS--VIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 107 D~~~Lv~~~r~ea~~-------~~~--v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
|.+.++++++.++.. +++ .+........+..++..+.||+++.+
T Consensus 56 D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~ 108 (190)
T PF00227_consen 56 DFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSL 108 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEE
T ss_pred chHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccc
Confidence 999999999988864 122 23334556666777777788887764
No 25
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.51 E-value=2.6e-14 Score=113.55 Aligned_cols=66 Identities=11% Similarity=0.129 Sum_probs=60.5
Q ss_pred cCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccccc-ccCceEEecCcEEEEEeccHHHHH
Q psy13971 31 KGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQA-QNSKLSMLNDHVVMAFAGKSLCLI 109 (153)
Q Consensus 31 ~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~-~~~KIf~I~~~i~~~~aG~~~D~~ 109 (153)
+|+|+|||+++ ||||||++++ .+++++... ..+|||+||+|++++++|..+|++
T Consensus 2 ~G~t~igik~~-----------------------dgVvlaad~~--~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 56 (195)
T cd03759 2 NGGAVVAMAGK-----------------------DCVAIASDLR--LGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQ 56 (195)
T ss_pred CCceEEEEEcC-----------------------CEEEEEEccc--cccCCEeEecCCCeEEEeCCCEEEEccchHHHHH
Confidence 58999999999 9999999999 788887644 679999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q psy13971 110 ALVALWYNEKDK 121 (153)
Q Consensus 110 ~Lv~~~r~ea~~ 121 (153)
.|++++|.++..
T Consensus 57 ~l~~~~r~~~~~ 68 (195)
T cd03759 57 TLAQKLRFRVNL 68 (195)
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 26
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.48 E-value=6.3e-14 Score=111.40 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=57.5
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCC-CCcccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKV-SPLLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~-s~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+||++++ ||||||+++| .+ +.++.++..+|||.||+|++++++|+.+|++.|
T Consensus 2 ~t~igi~~~-----------------------dgVvlaad~r--~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l 56 (193)
T cd03758 2 ETLIGIKGK-----------------------DFVILAADTS--AARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQF 56 (193)
T ss_pred ceEEEEEeC-----------------------CEEEEEEcCc--cccCcEEEecCcccEEEeCCCeEEEEccchHHHHHH
Confidence 478888888 9999999999 55 456777899999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.|+..
T Consensus 57 ~~~~~~~~~~ 66 (193)
T cd03758 57 AEYIQKNIQL 66 (193)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 27
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.47 E-value=4.7e-14 Score=114.41 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=60.8
Q ss_pred cCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEeccHHHHH
Q psy13971 31 KGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGKSLCLI 109 (153)
Q Consensus 31 ~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~ 109 (153)
+|+|+|||+++ ||||||++++ .++ +++.++..+|||.||+|++++++|+.+|++
T Consensus 1 ~G~T~igi~~k-----------------------dgVvlaad~r--~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~ 55 (219)
T TIGR03690 1 HGTTIVALTYP-----------------------GGVLMAGDRR--ATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAI 55 (219)
T ss_pred CCcEEEEEEEC-----------------------CEEEEEECCc--cccCcEEEcCCcceEEEcCCcEEEEecccHHHHH
Confidence 58999999999 9999999999 665 788778899999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q psy13971 110 ALVALWYNEKDK 121 (153)
Q Consensus 110 ~Lv~~~r~ea~~ 121 (153)
.|++++|++++.
T Consensus 56 ~l~~~~r~~~~~ 67 (219)
T TIGR03690 56 ELVRLFQVELEH 67 (219)
T ss_pred HHHHHHHHHHHH
Confidence 999999988864
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.43 E-value=1.7e-13 Score=110.48 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=61.9
Q ss_pred HhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc-ccccCceEEecCcEEEEEeccHHH
Q psy13971 29 VRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS-QAQNSKLSMLNDHVVMAFAGKSLC 107 (153)
Q Consensus 29 v~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~-~~~~~KIf~I~~~i~~~~aG~~~D 107 (153)
+++|+|+|||+++ ||||||++++ .+++++. .+..+|||+|++|++++++|..+|
T Consensus 5 ~~~G~Tvigik~~-----------------------dgVvlaaD~r--~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD 59 (212)
T cd03757 5 TDNGGTVLAIAGN-----------------------DFAVIAGDTR--LSEGYSILSRDSPKIFKLTDKCVLGSSGFQAD 59 (212)
T ss_pred cCCCccEEEEEcC-----------------------CEEEEEECCc--cccCCEeEeCCCCeEEEcCCCEEEEccchHHH
Confidence 4689999999999 9999999999 7777755 468899999999999999999999
Q ss_pred HHHHHHHHHhhhcC
Q psy13971 108 LIALVALWYNEKDK 121 (153)
Q Consensus 108 ~~~Lv~~~r~ea~~ 121 (153)
++.|++++|.++..
T Consensus 60 ~~~l~~~~r~~~~~ 73 (212)
T cd03757 60 ILALTKRLKARIKM 73 (212)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 29
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.43 E-value=2.1e-13 Score=107.81 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=57.7
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ ||||||++++ .++ .+..++..+|||+||+|++++++|+.+|++.|
T Consensus 1 tT~igi~~k-----------------------dgVvla~d~r--~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l 55 (188)
T cd03761 1 TTTLAFIFQ-----------------------GGVIVAVDSR--ATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYW 55 (188)
T ss_pred CcEEEEEEC-----------------------CEEEEEEcCC--ccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHH
Confidence 478999999 9999999999 666 56666789999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.|++.
T Consensus 56 ~~~~r~~~~~ 65 (188)
T cd03761 56 ERVLGRECRL 65 (188)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 30
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.41 E-value=2.7e-13 Score=112.88 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=73.9
Q ss_pred HHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCC-CCcccccccCceEEecCcEEEEEeccHH
Q psy13971 28 AVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKV-SPLLSQAQNSKLSMLNDHVVMAFAGKSL 106 (153)
Q Consensus 28 Av~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~-s~Ll~~~~~~KIf~I~~~i~~~~aG~~~ 106 (153)
-+++|+|+|||+++ ||||||+++| .. +++...+..+|||+|++|++++++|+.+
T Consensus 35 ~~~~G~T~IgIk~k-----------------------dgVvlAaD~r--~~~g~li~~~~~~KI~~I~~~i~~~~sG~~a 89 (247)
T PTZ00488 35 EFAHGTTTLAFKYG-----------------------GGIIIAVDSK--ATAGPYIASQSVKKVIEINPTLLGTMAGGAA 89 (247)
T ss_pred ccCCCceEEEEEeC-----------------------CEEEEEEecC--cccCCEEEcCCcCceEEcCCCEEEEeCcCHH
Confidence 45789999999999 9999999998 45 5788788999999999999999999999
Q ss_pred HHHHHHHHHHhhhcC-------ceeeeeeeccchhhhhhhhcCCCCcccee
Q psy13971 107 CLIALVALWYNEKDK-------TISVIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 107 D~~~Lv~~~r~ea~~-------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
|++.|++++|.++.. ++++-.. ...+.+.....||+|+.+
T Consensus 90 D~~~l~~~lr~~~~~y~~~~g~~isv~~l----a~~ls~~l~~~R~~~~~v 136 (247)
T PTZ00488 90 DCSFWERELAMQCRLYELRNGELISVAAA----SKILANIVWNYKGMGLSM 136 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHhcCCCCeeE
Confidence 999999999998853 2222222 123334444458887763
No 31
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.38 E-value=1.1e-12 Score=102.67 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=58.9
Q ss_pred CCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCC-CCcccccccCceEEecCcEEEEEeccHHHHHH
Q psy13971 32 GSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKV-SPLLSQAQNSKLSMLNDHVVMAFAGKSLCLIA 110 (153)
Q Consensus 32 G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~-s~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~ 110 (153)
|.|+|||+++ ||||||++++ .+ ++++..+..+|||.|++|++++++|..+|.+.
T Consensus 1 G~t~igi~~~-----------------------dgVvla~d~~--~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 55 (185)
T TIGR03634 1 GTTTVGIKCK-----------------------DGVVLAADKR--ASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQS 55 (185)
T ss_pred CCcEEEEEeC-----------------------CEEEEEEcCc--ccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHH
Confidence 7899999999 9999999998 55 56777778999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q psy13971 111 LVALWYNEKDK 121 (153)
Q Consensus 111 Lv~~~r~ea~~ 121 (153)
|.+++|.+++.
T Consensus 56 l~~~~~~~~~~ 66 (185)
T TIGR03634 56 LVRILKAEAKL 66 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999987753
No 32
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.35 E-value=2e-12 Score=99.53 Aligned_cols=64 Identities=25% Similarity=0.260 Sum_probs=57.2
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc-ccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS-QAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~-~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+||++++ |||||+++++ .++.+.. .+..+|||.|+++++++++|+.+|.+.|
T Consensus 1 tt~igi~~~-----------------------dgvvla~d~~--~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 55 (182)
T cd01906 1 TTIVGIKGK-----------------------DGVVLAADKR--VTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTL 55 (182)
T ss_pred CcEEEEEeC-----------------------CEEEEEEecc--cCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHH
Confidence 478999999 9999999999 6766655 5789999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++++++..
T Consensus 56 ~~~~~~~~~~ 65 (182)
T cd01906 56 VERLRKEAQL 65 (182)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 33
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.33 E-value=2.4e-12 Score=100.47 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=57.9
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc-ccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS-QAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~-~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+||++++ ||||||++++ .+++++. ....+|||+|+++++++++|..+|++.|
T Consensus 1 tt~i~i~~~-----------------------dgVvla~d~~--~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 55 (189)
T cd01912 1 TTIVGIKGK-----------------------DGVVLAADTR--ASAGSLVASRNFDKIFKISDNILLGTAGSAADTQAL 55 (189)
T ss_pred CcEEEEEeC-----------------------CEEEEEEcCC--cccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHH
Confidence 478999999 9999999999 7777765 6789999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.++..
T Consensus 56 ~~~~~~~~~~ 65 (189)
T cd01912 56 TRLLKRNLRL 65 (189)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 34
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.32 E-value=2.7e-12 Score=106.79 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=51.0
Q ss_pred cEEEEEEEecccCCCCcccccccCceEEec----CcEEEEEeccHHHHHHHHHHHHhhhcC
Q psy13971 65 NYLVMTKEIISLKVSPLLSQAQNSKLSMLN----DHVVMAFAGKSLCLIALVALWYNEKDK 121 (153)
Q Consensus 65 ~gvVla~ekk~~~~s~Ll~~~~~~KIf~I~----~~i~~~~aG~~~D~~~Lv~~~r~ea~~ 121 (153)
|||||++++| .+++++.....+|||+|+ +||+++.||+.+|++.|++++|.+++.
T Consensus 10 dGVVLaadkr--~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~ 68 (236)
T cd03765 10 AGLVFASDSR--TNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLED 68 (236)
T ss_pred CeEEEEEccC--ccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999 788887767789999998 999999999999999999999998864
No 35
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.30 E-value=3.8e-12 Score=99.95 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=57.0
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|++||+++ ||||||++++ .++ ++...+..+|||.||+|++++++|..+|++.|
T Consensus 1 ~t~igi~~~-----------------------dgVvla~D~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 55 (188)
T cd03762 1 TTIIAVEYD-----------------------GGVVLGADSR--TSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAI 55 (188)
T ss_pred CeEEEEEEC-----------------------CeEEEEEccc--ccCCceEEcCCcccEEEccCCEEEEecccHHHHHHH
Confidence 478899999 9999999999 555 56666788999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 56 ~~~l~~~~~~ 65 (188)
T cd03762 56 ADYVRYYLDM 65 (188)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 36
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.29 E-value=6.5e-12 Score=98.65 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=57.3
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+||++++ ||||||++++ .++ +++..+..+|||.|++|++++++|..+|.+.|
T Consensus 1 tt~iai~~~-----------------------dgvvia~d~r--~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l 55 (188)
T cd03764 1 TTTVGIVCK-----------------------DGVVLAADKR--ASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSL 55 (188)
T ss_pred CcEEEEEeC-----------------------CEEEEEEccc--cccCCEEecCCcccEEEccCCEEEEcCccHHHHHHH
Confidence 478999999 9999999999 665 67766789999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
.+++|.++..
T Consensus 56 ~~~~~~~~~~ 65 (188)
T cd03764 56 VRILKAEARL 65 (188)
T ss_pred HHHHHHHHHH
Confidence 9999987753
No 37
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.24 E-value=1.3e-11 Score=97.32 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=56.5
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC-cccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP-LLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~-Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ ||||||+++| .++. +...+..+|||.||+|++++++|..+|++.|
T Consensus 1 tt~igi~~~-----------------------dgvvlaad~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 55 (189)
T cd03763 1 TTIVGVVFK-----------------------DGVVLGADTR--ATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAV 55 (189)
T ss_pred CeEEEEEEC-----------------------CeEEEEEcCC--cccCceEEcCCccceEEecCCEEEEcCccHHHHHHH
Confidence 478999999 9999999999 6664 5555688999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.++..
T Consensus 56 ~~~~~~~~~~ 65 (189)
T cd03763 56 TNMISSNLEL 65 (189)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 38
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=98.91 E-value=3.7e-09 Score=84.31 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=58.8
Q ss_pred CCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccccccCceEEe-cCcEEEEEeccHHHHHH
Q psy13971 32 GSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQAQNSKLSML-NDHVVMAFAGKSLCLIA 110 (153)
Q Consensus 32 G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~~~~KIf~I-~~~i~~~~aG~~~D~~~ 110 (153)
|.|++||+.+ ++|||++++|. ..+.+...+..+||++| +||++|++||..+|.+.
T Consensus 1 gtTivgi~~~-----------------------dgVvlaaD~r~-s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~ 56 (172)
T PRK05456 1 GTTILAVRRN-----------------------GKVAIAGDGQV-TLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFT 56 (172)
T ss_pred CcEEEEEEEC-----------------------CEEEEEECCce-EeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHH
Confidence 5789999999 99999999993 33556666789999999 99999999999999999
Q ss_pred HHHHHHhhhcCc
Q psy13971 111 LVALWYNEKDKT 122 (153)
Q Consensus 111 Lv~~~r~ea~~~ 122 (153)
|.++++.+.+..
T Consensus 57 l~~~l~~~~~~y 68 (172)
T PRK05456 57 LFERFEAKLEEH 68 (172)
T ss_pred HHHHHHHHHHHc
Confidence 999999887653
No 39
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=98.86 E-value=8.3e-09 Score=75.46 Aligned_cols=54 Identities=17% Similarity=0.068 Sum_probs=49.0
Q ss_pred cEEEEEEEecccCCCCccc-ccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhc
Q psy13971 65 NYLVMTKEIISLKVSPLLS-QAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKD 120 (153)
Q Consensus 65 ~gvVla~ekk~~~~s~Ll~-~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~ 120 (153)
+++|||++++ .+.++.. .....||+.++++++++++|..+|.+.+.++++.++.
T Consensus 10 ~gvila~d~~--~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~ 64 (164)
T cd01901 10 GGVVLAADKR--LSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQ 64 (164)
T ss_pred CEEEEEEecc--cCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHH
Confidence 9999999998 6666665 5688999999999999999999999999999999884
No 40
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=98.79 E-value=1.6e-08 Score=81.17 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=57.5
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccccccCceEEecC-cEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQAQNSKLSMLND-HVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~~~~KIf~I~~-~i~~~~aG~~~D~~~L 111 (153)
.|++||+.+ +||||++++|. ..+.+...+..+||++|+| |++|++||..+|.+.|
T Consensus 1 tTivgi~~~-----------------------dgVvlaaD~r~-t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l 56 (171)
T cd01913 1 TTILAVRKN-----------------------GKVVIAGDGQV-TLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTL 56 (171)
T ss_pred CeEEEEEEC-----------------------CEEEEEECCce-EeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHH
Confidence 378888888 99999999993 3355677788999999999 9999999999999999
Q ss_pred HHHHHhhhcCc
Q psy13971 112 VALWYNEKDKT 122 (153)
Q Consensus 112 v~~~r~ea~~~ 122 (153)
.++++.+.+..
T Consensus 57 ~~~~~~~~~~y 67 (171)
T cd01913 57 FERFEAKLEQY 67 (171)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 41
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=98.75 E-value=2.4e-08 Score=80.03 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=57.3
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccccccCceEEe-cCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQAQNSKLSML-NDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~~~~KIf~I-~~~i~~~~aG~~~D~~~L 111 (153)
.|++|++.+ +||||++++|. ..+.+...+..+||++| +||++|++||..+|.+.|
T Consensus 1 tTivgi~~~-----------------------dgVvlaaD~r~-s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l 56 (171)
T TIGR03692 1 TTILAVRRN-----------------------GKVVIAGDGQV-TLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTL 56 (171)
T ss_pred CeEEEEEEC-----------------------CEEEEEECCce-EeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHH
Confidence 378888888 99999999993 33556667889999999 599999999999999999
Q ss_pred HHHHHhhhcCc
Q psy13971 112 VALWYNEKDKT 122 (153)
Q Consensus 112 v~~~r~ea~~~ 122 (153)
.++++.+....
T Consensus 57 ~~~~~~~~~~y 67 (171)
T TIGR03692 57 FERFEAKLEEY 67 (171)
T ss_pred HHHHHHHHHHc
Confidence 99999988753
No 42
>KOG0179|consensus
Probab=98.38 E-value=6.2e-07 Score=74.86 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=59.1
Q ss_pred hcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccccccCceEEecCcEEEEEeccHHHHH
Q psy13971 30 RKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAGKSLCLI 109 (153)
Q Consensus 30 ~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~ 109 (153)
.+|+|+|+|.++ |.+|+|++.|. .++--+..+..+|||+++|+++++.+|+.+|..
T Consensus 27 ~NGGT~vaIaG~-----------------------dFavvA~DTR~-s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l 82 (235)
T KOG0179|consen 27 DNGGTTVAIAGE-----------------------DFAVVAGDTRM-SSGYNINSRDQSKIFKLGDNIVLGSSGFYADTL 82 (235)
T ss_pred cCCceEEEEcCC-----------------------ceEEEeccccc-ccceeeeccccchheeccCceEEecccchhhHH
Confidence 689999999999 99999999992 333445668999999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q psy13971 110 ALVALWYNEKDK 121 (153)
Q Consensus 110 ~Lv~~~r~ea~~ 121 (153)
.|+..+.++-..
T Consensus 83 ~L~k~i~~r~~~ 94 (235)
T KOG0179|consen 83 ALVKVIKSRIKQ 94 (235)
T ss_pred HHHHHHHHHHHH
Confidence 999988876543
No 43
>KOG0180|consensus
Probab=97.89 E-value=2e-05 Score=64.56 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=52.9
Q ss_pred cCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC-cccccccCceEEecCcEEEEEeccHHHHH
Q psy13971 31 KGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP-LLSQAQNSKLSMLNDHVVMAFAGKSLCLI 109 (153)
Q Consensus 31 ~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~-Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~ 109 (153)
+|+++|+..++ ++|.+|+++| .... .......+|||+|.|+++++.+|+..|.+
T Consensus 7 nGg~vvAM~gk-----------------------~cvaIa~D~R--lG~q~~tistdf~ki~~igdr~y~GL~glatDvq 61 (204)
T KOG0180|consen 7 NGGSVVAMAGK-----------------------NCVAIASDLR--LGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQ 61 (204)
T ss_pred cCceEEEEeCC-----------------------ceEEEEeccc--cceeeeeeeccchhheecCCeeEEeccccchhHH
Confidence 69999999999 9999999998 3322 22335789999999999999999999999
Q ss_pred HHHHHHHh
Q psy13971 110 ALVALWYN 117 (153)
Q Consensus 110 ~Lv~~~r~ 117 (153)
.|.+++|.
T Consensus 62 tl~~~~~f 69 (204)
T KOG0180|consen 62 TLLERLRF 69 (204)
T ss_pred HHHHHHHH
Confidence 99988764
No 44
>KOG0185|consensus
Probab=97.58 E-value=0.00014 Score=61.71 Aligned_cols=83 Identities=13% Similarity=0.257 Sum_probs=63.3
Q ss_pred cceeeCCCCcchhhHHHHH--------HHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 9 AITVFSPDGHLLQVEYAQE--------AVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 9 ~~t~FsP~Grl~QvEYA~e--------Av~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
.-++|.|.|. |+|-|-. ..--|.++++++-+ +|||+|++... +-..
T Consensus 12 a~~~f~~~~~--~m~~a~~~~~qrt~~p~vTGTSVla~ky~-----------------------~GVviaaD~lg-SYGs 65 (256)
T KOG0185|consen 12 APGTFYPSGS--LMENAGDYPIQRTLNPIVTGTSVLALKYK-----------------------DGVVIAADTLG-SYGS 65 (256)
T ss_pred CCCcCcCccc--hhhhccCCCcccccCceeccceEEEEEec-----------------------CceEEEecccc-cchh
Confidence 3467888854 4555533 22358889999999 99999999972 1223
Q ss_pred cccccccCceEEecCcEEEEEeccHHHHHHHHHHHHh
Q psy13971 81 LLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYN 117 (153)
Q Consensus 81 Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ 117 (153)
|.--...++||+++||+.++++|=.+|.+.|.+.+..
T Consensus 66 laR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~ 102 (256)
T KOG0185|consen 66 LARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQ 102 (256)
T ss_pred hhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHH
Confidence 4433688999999999999999999999999987754
No 45
>KOG0177|consensus
Probab=97.47 E-value=0.00013 Score=60.21 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=62.4
Q ss_pred cEEEEEEEecccCCCCcccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhc-----C--ceeeeeeeccchhhhh
Q psy13971 65 NYLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKD-----K--TISVIYYGGKNSSALA 137 (153)
Q Consensus 65 ~gvVla~ekk~~~~s~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~-----~--~~~v~~~~~~~~~q~~ 137 (153)
|.|++|+++.. ..+-++-++..+|++.+++|+.|+++|=.+|.-...+|...-.+ + ..+.-..+.-....++
T Consensus 11 dfvilAsDt~~-~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La 89 (200)
T KOG0177|consen 11 DFVILASDTSA-ARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELA 89 (200)
T ss_pred CEEEEeecchh-hcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHH
Confidence 99999999972 44566777899999999999999999999999998887643222 1 1122223344455566
Q ss_pred hhhcCCCCccceee
Q psy13971 138 TELFLRPPRDLGIR 151 (153)
Q Consensus 138 t~~~~~rp~~~gi~ 151 (153)
+..-.++||.|.+.
T Consensus 90 ~~LRsr~~yqV~~L 103 (200)
T KOG0177|consen 90 ESLRSRTPYQVNIL 103 (200)
T ss_pred HHHhcCCCceEEEE
Confidence 66667888888764
No 46
>KOG0173|consensus
Probab=97.19 E-value=0.00044 Score=59.17 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=53.4
Q ss_pred HHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccccccCceEEecCcEEEEEeccHHH
Q psy13971 28 AVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAGKSLC 107 (153)
Q Consensus 28 Av~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~~~~KIf~I~~~i~~~~aG~~~D 107 (153)
+.+-|.|++|+.-+ +||||+++.|+ ...+.+.+.+.+||+.|.++|+++-+|-.+|
T Consensus 33 ~tkTGTtIvgv~~k-----------------------~gvIlgADtRa-T~G~IvaDKnC~KIH~ia~~IyccGAGtAAD 88 (271)
T KOG0173|consen 33 ATKTGTTIVGVIFK-----------------------DGVILGADTRA-TEGPIVADKNCEKIHFIAPNIYCCGAGTAAD 88 (271)
T ss_pred ccccCcEEEEEEeC-----------------------CeEEEeecccc-cCCCeeecchhHHHhhcccceEEccCCchhh
Confidence 45568899999999 99999999993 4467888889999999999999999999999
Q ss_pred HHHHHH
Q psy13971 108 LIALVA 113 (153)
Q Consensus 108 ~~~Lv~ 113 (153)
....-+
T Consensus 89 te~vt~ 94 (271)
T KOG0173|consen 89 TEMVTR 94 (271)
T ss_pred HHHHHH
Confidence 876544
No 47
>KOG0174|consensus
Probab=97.01 E-value=0.0012 Score=55.07 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=56.7
Q ss_pred HHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC-cccccccCceEEecCcEEEEEeccHH
Q psy13971 28 AVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP-LLSQAQNSKLSMLNDHVVMAFAGKSL 106 (153)
Q Consensus 28 Av~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~-Ll~~~~~~KIf~I~~~i~~~~aG~~~ 106 (153)
.+.-|.|++++.-+ +||||.++.| .+.. .+..+-..|+-+|.|+|+|.-+|-.+
T Consensus 15 evstGTTImAv~y~-----------------------gGVvlGaDSR--Ts~GayvanRvtDKlT~itD~i~cCRSGSAA 69 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYD-----------------------GGVVLGADSR--TSTGAYVANRVTDKLTPITDNIYCCRSGSAA 69 (224)
T ss_pred ccccCceEEEEEEc-----------------------CcEEEeccCC--ccchHHHHhhhcccceeccccEEEecCCchh
Confidence 46789999999999 9999999998 5543 45456788999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy13971 107 CLIALVALWYN 117 (153)
Q Consensus 107 D~~~Lv~~~r~ 117 (153)
|.+.+.++++.
T Consensus 70 DtQaiaD~~~Y 80 (224)
T KOG0174|consen 70 DTQAIADIVRY 80 (224)
T ss_pred hHHHHHHHHHH
Confidence 99999998875
No 48
>KOG0175|consensus
Probab=96.88 E-value=0.0018 Score=55.74 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=54.8
Q ss_pred hcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCC-CCcccccccCceEEecCcEEEEEeccHHHH
Q psy13971 30 RKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKV-SPLLSQAQNSKLSMLNDHVVMAFAGKSLCL 108 (153)
Q Consensus 30 ~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~-s~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~ 108 (153)
.+|.|.++++-+ .||++|++.| .+ ..++......||..||+++.-++||-.+|.
T Consensus 69 ~hGTTTLAF~f~-----------------------~GvivAvDSR--As~G~YIasqtv~KVIeIn~ylLGTmAGgAADC 123 (285)
T KOG0175|consen 69 AHGTTTLAFKFK-----------------------GGVIVAVDSR--ASAGSYIASQTVKKVIEINPYLLGTMAGGAADC 123 (285)
T ss_pred cCCceEEEEEec-----------------------CcEEEEEecc--ccccceeechhhceeeeechhhhhcccCcchhh
Confidence 589999999999 9999999999 45 446666789999999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy13971 109 IALVALWYNEK 119 (153)
Q Consensus 109 ~~Lv~~~r~ea 119 (153)
..--+.+-.||
T Consensus 124 qfWer~L~kec 134 (285)
T KOG0175|consen 124 QFWERVLAKEC 134 (285)
T ss_pred HHHHHHHHHHH
Confidence 87665554444
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=0.25 Score=40.31 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=42.9
Q ss_pred cCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCC-CCcccc---cccCceEEecCcEEEEEeccHH
Q psy13971 31 KGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKV-SPLLSQ---AQNSKLSMLNDHVVMAFAGKSL 106 (153)
Q Consensus 31 ~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~-s~Ll~~---~~~~KIf~I~~~i~~~~aG~~~ 106 (153)
++.|+++++-+ +-+|++.+-. .+ ..-.-+ +...||| ++.+..+|+|-++
T Consensus 3 h~TTiv~vr~~-----------------------gkv~iagDGQ--VtlG~tvmK~narKvRkl~--~gkvlaGFAGstA 55 (178)
T COG5405 3 HMTTIVAVRKN-----------------------GKVVIAGDGQ--VTLGNTVMKGNARKVRRLY--NGKVLAGFAGSTA 55 (178)
T ss_pred eeEEEEEEeeC-----------------------CeEEEecCce--EeecceeeeccHHHHHHHc--CCcEEEEecccch
Confidence 46788888877 6677776654 22 122222 2455666 6799999999999
Q ss_pred HHHHHHHHHHhhh
Q psy13971 107 CLIALVALWYNEK 119 (153)
Q Consensus 107 D~~~Lv~~~r~ea 119 (153)
|+..|.+.+-.++
T Consensus 56 DaftLfe~fe~kl 68 (178)
T COG5405 56 DAFTLFERFEAKL 68 (178)
T ss_pred hHHHHHHHHHHHH
Confidence 9999998765544
No 50
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=53.83 E-value=17 Score=23.60 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=28.0
Q ss_pred eeeCC-CCcchhhHHHHHHHhcCCceEEeeee
Q psy13971 11 TVFSP-DGHLLQVEYAQEAVRKGSTAVSFQVE 41 (153)
Q Consensus 11 t~FsP-~Grl~QvEYA~eAv~~G~t~Vgi~~~ 41 (153)
|.||+ +|.+.--||..+|.++|-.++++.-.
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh 37 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDH 37 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeC
Confidence 46888 99999999999999999999999877
No 51
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=34.38 E-value=35 Score=25.08 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=27.5
Q ss_pred eeC-CCCcchhhHHHHHHHhcCCceEEeeee
Q psy13971 12 VFS-PDGHLLQVEYAQEAVRKGSTAVSFQVE 41 (153)
Q Consensus 12 ~Fs-P~Grl~QvEYA~eAv~~G~t~Vgi~~~ 41 (153)
.|| +||...--||...|.++|-+.+++.-.
T Consensus 8 ~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 8 KYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred cCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 577 899999999999999999999999887
No 52
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=30.44 E-value=26 Score=20.23 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=6.8
Q ss_pred ceeeCCCCcc
Q psy13971 10 ITVFSPDGHL 19 (153)
Q Consensus 10 ~t~FsP~Grl 19 (153)
.-.|||||+-
T Consensus 13 ~p~~SpDGk~ 22 (39)
T PF07676_consen 13 SPAWSPDGKY 22 (39)
T ss_dssp EEEE-TTSSE
T ss_pred CEEEecCCCE
Confidence 4579999974
No 53
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=30.28 E-value=22 Score=26.92 Aligned_cols=27 Identities=4% Similarity=-0.150 Sum_probs=15.9
Q ss_pred eEEecCcEEEEEeccHHHHHHHHHHHH
Q psy13971 90 LSMLNDHVVMAFAGKSLCLIALVALWY 116 (153)
Q Consensus 90 If~I~~~i~~~~aG~~~D~~~Lv~~~r 116 (153)
+..|-.+.++-+-=--+|.+.+.+-+|
T Consensus 81 avci~Gn~GVFVe~~kadf~kIfk~L~ 107 (109)
T COG4831 81 AVCIMGNVGVFVELDKADFNKIFKTLR 107 (109)
T ss_pred EEEEecceeEEEEcchhhHHHHHHHHh
Confidence 345556666665555666666665554
No 54
>PRK07328 histidinol-phosphatase; Provisional
Probab=28.51 E-value=73 Score=26.37 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=31.6
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeee
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVE 41 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~ 41 (153)
|+...|+.++ .||++|.-.==||+.+|+++|-..+|+.-.
T Consensus 1 ~m~~D~H~HT-~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH 40 (269)
T PRK07328 1 KMLVDYHMHT-PLCGHAVGTPEEYVQAARRAGLKEIGFTDH 40 (269)
T ss_pred CCceeeccCC-CCCCCCCCCHHHHHHHHHHCCCCEEEEecC
Confidence 3433455554 699999877779999999999999999977
No 55
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=27.77 E-value=63 Score=26.71 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=27.8
Q ss_pred eeeCCCCcchhhHHHHHHHhcCCceEEeeee
Q psy13971 11 TVFSPDGHLLQVEYAQEAVRKGSTAVSFQVE 41 (153)
Q Consensus 11 t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~ 41 (153)
|.|| +|...-.|++.+|..+|...+++.-.
T Consensus 9 T~~s-dg~~~~~e~~~~A~~~g~~~~~iTdH 38 (237)
T COG1387 9 TVFS-DGEATPEEMVEAAIELGLEYIAITDH 38 (237)
T ss_pred cccc-cCCCCHHHHHHHHHHcCCeEEEEecc
Confidence 5799 99999999999999999999999877
No 56
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.06 E-value=75 Score=24.44 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=28.5
Q ss_pred CceEEecCcEEEEEeccHHHHHHHHHHHHhhhc
Q psy13971 88 SKLSMLNDHVVMAFAGKSLCLIALVALWYNEKD 120 (153)
Q Consensus 88 ~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~ 120 (153)
--+|.|-+..++.+-|..+|....++..++.-.
T Consensus 8 ~~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~~ 40 (124)
T COG4728 8 LIIFKIKDKLGLTFVSKSADMSIQVEKAERLIK 40 (124)
T ss_pred eEEEEEhhhcCcEEEEecchhHHHHHHHHHhhc
Confidence 357899999999999999999999998887543
No 57
>PRK06361 hypothetical protein; Provisional
Probab=23.98 E-value=89 Score=24.62 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=27.5
Q ss_pred eeeCCCCcchhhHHHHHHHhcCCceEEeeee
Q psy13971 11 TVFSPDGHLLQVEYAQEAVRKGSTAVSFQVE 41 (153)
Q Consensus 11 t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~ 41 (153)
|.|| ||+..--|++.+|.+.|-..++|.-.
T Consensus 3 t~~s-dg~~~~~e~v~~A~~~Gl~~i~iTDH 32 (212)
T PRK06361 3 TIFS-DGELIPSELVRRARVLGYRAIAITDH 32 (212)
T ss_pred cccc-CCCCCHHHHHHHHHHcCCCEEEEecC
Confidence 4688 89999999999999999999999977
No 58
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=23.71 E-value=18 Score=34.33 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=51.9
Q ss_pred CCcchhhHHHHHHHhcCCceEEeeeeeeeeecc-cccccccce-eeccccCc-EEEEEEEecccCCCCcccc--cccCce
Q psy13971 16 DGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSF-RKTGLRVQS-TIKITLNN-YLVMTKEIISLKVSPLLSQ--AQNSKL 90 (153)
Q Consensus 16 ~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~-~~~~~~~~~-~~~~~~~~-gvVla~ekk~~~~s~Ll~~--~~~~KI 90 (153)
+-|.||+.-|.+|..+ +|.|.+ ||| =||...++- +--++-.. -+++.+..| ||+.+ +...++
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvl-------PTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTK-----PLV~Qh~~~~~~v 81 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVL-------PTGLGKTFIAAMVIANRLRWFGGKVLFLAPTK-----PLVLQHAEFCRKV 81 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEe-------cCCccHHHHHHHHHHHHHHhcCCeEEEecCCc-----hHHHHHHHHHHHH
Confidence 6799999999999887 443332 222 122222331 11122223 488887777 88877 477899
Q ss_pred EEecCcEEEEEeccHHHHH
Q psy13971 91 SMLNDHVVMAFAGKSLCLI 109 (153)
Q Consensus 91 f~I~~~i~~~~aG~~~D~~ 109 (153)
..|++.=.++++|-..=-.
T Consensus 82 ~~ip~~~i~~ltGev~p~~ 100 (542)
T COG1111 82 TGIPEDEIAALTGEVRPEE 100 (542)
T ss_pred hCCChhheeeecCCCChHH
Confidence 9998888899999865443
No 59
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=22.13 E-value=41 Score=14.56 Aligned_cols=7 Identities=29% Similarity=0.766 Sum_probs=5.3
Q ss_pred CCcccee
Q psy13971 144 PPRDLGI 150 (153)
Q Consensus 144 rp~~~gi 150 (153)
+||.||+
T Consensus 2 gpy~fgl 8 (8)
T PF08261_consen 2 GPYSFGL 8 (8)
T ss_pred CcccccC
Confidence 6888875
No 60
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=21.65 E-value=1e+02 Score=24.94 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=31.0
Q ss_pred CCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeee
Q psy13971 5 RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVE 41 (153)
Q Consensus 5 ~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~ 41 (153)
-||.++-+ +|+|.-.=-||+.+|++.|-..|++...
T Consensus 3 ~~DlHvHt-~~d~~~~~~e~i~~A~~~Gl~~i~itdH 38 (237)
T PRK00912 3 FYDLNVHA-VPDGYDTVLRLISEASHLGYSGIALSNH 38 (237)
T ss_pred ceEeccCC-CCCCcchHHHHHHHHHHCCCCEEEEecC
Confidence 36777777 5889988899999999999999999755
No 61
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=20.50 E-value=1.1e+02 Score=25.20 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=29.4
Q ss_pred CCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeee
Q psy13971 7 DRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEV 42 (153)
Q Consensus 7 d~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~ 42 (153)
+.++ .||++|+=.=-||+..|+++|-+.+|+.-..
T Consensus 4 H~Ht-~~s~d~~~~~ee~v~~A~~~Gl~~i~~TdH~ 38 (253)
T TIGR01856 4 HSHS-PFCAHGTDTLEEVVQEAIQLGFEEICFTEHA 38 (253)
T ss_pred ccCc-CCCCCCCCCHHHHHHHHHHcCCCEEEecCCC
Confidence 3444 6899998877899999999999999998773
No 62
>PRK08123 histidinol-phosphatase; Reviewed
Probab=20.31 E-value=1.4e+02 Score=24.77 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCCCCCCCcceeeCCCCcc-hhhHHHHHHHhcCCceEEeeee
Q psy13971 1 MSSSRYDRAITVFSPDGHL-LQVEYAQEAVRKGSTAVSFQVE 41 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl-~QvEYA~eAv~~G~t~Vgi~~~ 41 (153)
|....|+.++ .||++|.- .=-||+.+|+++|-..+|+.-.
T Consensus 1 ~m~~D~H~HT-~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~tdH 41 (270)
T PRK08123 1 MMKRDGHTHT-PFCPHGSKDDLEAYIERAIELGFTEITFTEH 41 (270)
T ss_pred CCccccccCC-CCCCCCCCCCHHHHHHHHHHcCCcEEEEecc
Confidence 3333455554 78988743 2378999999999999999977
Done!