Query psy13971
Match_columns 153
No_of_seqs 102 out of 1042
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 16:18:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yar_A Proteasome alpha subuni 100.0 4.2E-33 1.4E-37 224.0 8.9 125 1-150 3-136 (233)
2 1j2p_A Alpha-ring, proteasome 100.0 8E-33 2.7E-37 224.6 9.7 126 1-151 3-137 (246)
3 1ryp_A 20S proteasome; multica 100.0 8.6E-33 2.9E-37 223.7 8.6 123 4-151 1-133 (243)
4 1ryp_F 20S proteasome; multica 100.0 1E-32 3.5E-37 222.1 8.2 123 2-151 1-132 (233)
5 1iru_E 20S proteasome; cell cy 100.0 1.6E-32 5.4E-37 222.0 9.3 125 1-150 3-141 (241)
6 3h4p_A Proteasome subunit alph 100.0 7.4E-33 2.5E-37 229.0 7.4 125 1-150 7-140 (264)
7 1iru_F 20S proteasome; cell cy 100.0 2.3E-32 7.8E-37 225.1 10.0 124 1-151 1-133 (263)
8 1iru_B 20S proteasome; cell cy 100.0 3.1E-32 1.1E-36 219.0 9.3 124 3-151 2-134 (233)
9 1iru_A 20S proteasome; cell cy 100.0 5.6E-32 1.9E-36 219.3 9.7 123 4-151 7-139 (246)
10 1ryp_C 20S proteasome; multica 100.0 7E-32 2.4E-36 218.2 9.8 123 4-151 3-135 (244)
11 1iru_D 20S proteasome; cell cy 100.0 4.1E-32 1.4E-36 221.0 8.3 121 6-151 3-132 (248)
12 1iru_G 20S proteasome; cell cy 100.0 9E-32 3.1E-36 220.0 9.7 124 3-151 4-136 (254)
13 1iru_C 20S proteasome; cell cy 100.0 8.6E-32 3E-36 220.9 9.4 125 1-151 1-135 (261)
14 1ryp_D 20S proteasome; multica 100.0 9.4E-32 3.2E-36 217.4 9.2 122 5-151 1-132 (241)
15 1ryp_G 20S proteasome; multica 100.0 1.9E-31 6.4E-36 217.0 9.6 122 4-150 2-132 (244)
16 3nzj_F Proteasome component C1 100.0 1.8E-31 6.3E-36 224.2 9.5 123 3-150 5-136 (288)
17 1ryp_B 20S proteasome; multica 100.0 3.5E-31 1.2E-35 215.4 10.2 124 1-150 1-134 (250)
18 1ryp_E 20S proteasome; multica 100.0 1.2E-30 4.2E-35 210.7 8.2 119 7-150 1-134 (242)
19 1q5q_A Proteasome alpha-type s 99.8 4.2E-21 1.4E-25 157.9 6.4 106 12-151 6-123 (259)
20 3mi0_A Proteasome subunit alph 99.7 6.1E-18 2.1E-22 139.1 9.4 96 21-150 16-122 (248)
21 1iru_N 20S proteasome; cell cy 99.6 4.6E-16 1.6E-20 123.4 3.4 101 26-151 2-111 (219)
22 2jay_A Proteasome; hydrolase; 99.6 6.8E-16 2.3E-20 129.6 3.9 74 22-121 48-122 (291)
23 1yar_H Proteasome beta subunit 99.6 2.8E-15 9.6E-20 119.3 5.9 70 27-121 3-73 (217)
24 1q5r_H Proteasome beta-type su 99.6 1.1E-15 3.8E-20 128.6 3.4 100 25-150 58-167 (294)
25 2z3b_A ATP-dependent protease 99.5 6.3E-15 2.2E-19 114.7 5.5 96 30-150 3-101 (180)
26 1iru_M 20S proteasome; cell cy 99.5 8.2E-15 2.8E-19 115.6 6.0 95 29-150 6-108 (213)
27 1ryp_N 20S proteasome; multica 99.5 5.6E-15 1.9E-19 118.5 4.1 101 26-151 2-115 (233)
28 1g0u_M Proteasome component PR 99.5 5.2E-15 1.8E-19 121.7 3.2 105 22-151 31-148 (266)
29 1iru_J 20S proteasome; cell cy 99.5 2.2E-14 7.7E-19 112.4 5.1 94 30-150 6-107 (205)
30 3nzj_H Proteasome component PU 99.5 4.2E-14 1.4E-18 116.9 6.2 72 25-121 22-94 (261)
31 1ryp_H 20S proteasome; multica 99.5 3.6E-14 1.2E-18 111.4 5.4 71 26-121 3-74 (205)
32 1ryp_J 20S proteasome; multica 99.5 5E-14 1.7E-18 110.4 6.0 94 29-150 5-106 (204)
33 1m4y_A ATP-dependent protease 99.5 4.4E-14 1.5E-18 108.4 5.5 93 33-150 1-95 (171)
34 3nzj_K Proteasome component PR 99.5 3.9E-14 1.3E-18 118.8 5.5 73 24-121 67-140 (287)
35 1j2q_H Proteasome beta subunit 99.5 7E-14 2.4E-18 109.4 6.2 64 33-121 1-65 (202)
36 1g3k_A ATP-dependent protease 99.4 7E-14 2.4E-18 107.7 5.5 92 33-149 1-94 (174)
37 1ryp_K 20S proteasome; multica 99.4 1.5E-13 5.3E-18 106.9 6.2 64 33-121 2-66 (198)
38 1ryp_M 20S proteasome; multica 99.4 1.4E-13 4.6E-18 109.9 5.8 68 29-121 6-74 (222)
39 1iru_H 20S proteasome; cell cy 99.4 1E-13 3.6E-18 108.6 4.9 64 33-121 1-65 (205)
40 3h4p_a Proteasome subunit beta 99.4 1.1E-13 3.7E-18 110.5 4.7 65 32-121 1-66 (219)
41 1iru_K 20S proteasome; cell cy 99.4 2.3E-13 7.7E-18 106.4 5.7 64 33-121 2-66 (201)
42 1q5q_H Proteasome beta-type su 99.4 1.4E-13 4.9E-18 110.8 4.6 92 33-150 1-102 (235)
43 1ryp_L 20S proteasome; multica 99.4 4.6E-13 1.6E-17 105.6 5.5 64 33-121 1-65 (212)
44 3unf_N Proteasome subunit beta 99.4 5.4E-13 1.8E-17 103.9 5.1 64 33-121 1-65 (199)
45 1iru_L 20S proteasome; cell cy 99.3 9.7E-13 3.3E-17 103.0 5.5 64 33-121 1-65 (204)
46 1ryp_I 20S proteasome; multica 99.3 2.8E-12 9.6E-17 102.4 6.1 64 33-121 1-65 (222)
47 1iru_I 20S proteasome; cell cy 99.3 7.5E-12 2.6E-16 101.0 6.7 64 33-121 1-65 (234)
48 3unf_H Proteasome subunit beta 99.2 7E-12 2.4E-16 101.7 5.9 64 33-121 1-65 (234)
49 3jx9_A Putative phosphoheptose 53.4 11 0.00038 28.9 3.4 31 10-40 81-112 (170)
50 2yxo_A Histidinol phosphatase; 42.6 16 0.00054 28.0 2.8 31 12-42 9-39 (267)
51 3hvz_A Uncharacterized protein 24.5 17 0.00058 24.5 0.2 37 6-42 4-48 (78)
52 1m65_A Hypothetical protein YC 20.9 58 0.002 24.4 2.6 35 6-41 6-40 (245)
No 1
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.98 E-value=4.2e-33 Score=223.99 Aligned_cols=125 Identities=30% Similarity=0.373 Sum_probs=100.8
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
|++++||+++|+|||||||||||||+||+++|+|+|||+++ ||||||+++| .+++
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~~ 57 (233)
T 1yar_A 3 QGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFA-----------------------NGVLLISDKK--VRSR 57 (233)
T ss_dssp ----------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEET-----------------------TEEEEEECCC--CCCT
T ss_pred cccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEEC-----------------------CEEEEEEecc--CCcc
Confidence 67789999999999999999999999999999999999999 9999999999 7788
Q ss_pred cccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 81 LLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 81 Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
++.....+|||+|++||++++||..+|++.|++++|.++.. ++++ +...+++.+|..+|..+.||+++++
T Consensus 58 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~ 136 (233)
T 1yar_A 58 LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSL 136 (233)
T ss_dssp TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEE
T ss_pred cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEE
Confidence 88778899999999999999999999999999999998764 2222 3333556677778877888888875
No 2
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.98 E-value=8e-33 Score=224.64 Aligned_cols=126 Identities=29% Similarity=0.356 Sum_probs=109.3
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
|++++||+++|+|||||||||||||+||+++|+|+|||+++ ||||||+++| .+++
T Consensus 3 ~~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~~ 57 (246)
T 1j2p_A 3 LPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCK-----------------------EGVILIADKR--VGSK 57 (246)
T ss_dssp -CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEET-----------------------TEEEEEEECC--CSCT
T ss_pred ccccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEEC-----------------------CEEEEEEecc--CCcc
Confidence 55889999999999999999999999999999999999999 9999999999 7788
Q ss_pred cccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCccceee
Q psy13971 81 LLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 81 Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
++.....+|||.|++||++++||..+|++.|++++|.++.. ++++ +...+++..|..+|..+.||+++++.
T Consensus 58 l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~l 137 (246)
T 1j2p_A 58 LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLL 137 (246)
T ss_dssp TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEE
T ss_pred ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEE
Confidence 88778899999999999999999999999999999988764 2232 33335566677788878888888763
No 3
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.97 E-value=8.6e-33 Score=223.75 Aligned_cols=123 Identities=23% Similarity=0.243 Sum_probs=109.7
Q ss_pred CCCCCcceeeCCCCcchhhHHHHHHHhc-CCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcc
Q psy13971 4 SRYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLL 82 (153)
Q Consensus 4 ~~Yd~~~t~FsP~Grl~QvEYA~eAv~~-G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll 82 (153)
++||+++|+|||||||||||||+||+++ |+|+|||+++ ||||||+++| .+++++
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~-----------------------dgVvlaad~r--~~~~l~ 55 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGK-----------------------DCTVVISQKK--VPDKLL 55 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECS-----------------------SEEEEEEECC--CCCTTB
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeC-----------------------CEEEEEEEec--CCcccc
Confidence 4899999999999999999999999999 9999999999 9999999999 678998
Q ss_pred cccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------cee--eeeeeccchhhhhhhhcCCCCccceee
Q psy13971 83 SQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TIS--VIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 83 ~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~--v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
..+..+|||.|++||++++||+.+|++.|++++|.+++. +++ .+...+++.+|..+|+.+.||+++++.
T Consensus 56 ~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~l 133 (243)
T 1ryp_A 56 DPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILT 133 (243)
T ss_dssp CGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEE
T ss_pred CCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEE
Confidence 888999999999999999999999999999999998864 223 344446677777888888999988763
No 4
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.97 E-value=1e-32 Score=222.11 Aligned_cols=123 Identities=22% Similarity=0.273 Sum_probs=108.1
Q ss_pred CCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCc
Q psy13971 2 SSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPL 81 (153)
Q Consensus 2 ~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~L 81 (153)
|+++||+++|+|||||||+|||||+||+++|+|+|||+++ +|||||+++| .++++
T Consensus 1 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~~l 55 (233)
T 1ryp_F 1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSN-----------------------THAVLVALKR--NADEL 55 (233)
T ss_dssp CHHHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECS-----------------------SEEEEEEECC--CSSTT
T ss_pred CCCcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcC-----------------------CEEEEEEEec--ccccc
Confidence 4578999999999999999999999999999999999999 9999999999 77887
Q ss_pred ccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ce--eeeeeeccchhhhhhhhcCCCCccceee
Q psy13971 82 LSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TI--SVIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 82 l~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~--~v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
. +..+|||+|++||++++||..+|++.|++++|.+++. ++ ..+...+++.+|..||..+.||+++++.
T Consensus 56 ~--~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~l 132 (233)
T 1ryp_F 56 S--SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLL 132 (233)
T ss_dssp B--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEE
T ss_pred c--cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEE
Confidence 6 4779999999999999999999999999999998864 22 2344456777788888888999888763
No 5
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.97 E-value=1.6e-32 Score=221.97 Aligned_cols=125 Identities=28% Similarity=0.380 Sum_probs=104.3
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
|++++||+++|+|||||||+|||||+||+++|+|+|||+++ ||||||+++| .+++
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g 57 (241)
T 1iru_E 3 LTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTS-----------------------EGVCLAVEKR--ITSP 57 (241)
T ss_dssp -----CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEET-----------------------TEEEEEEECC--CCCT
T ss_pred CccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcC-----------------------CEEEEEEecc--cCCc
Confidence 56789999999999999999999999999999999999999 9999999999 8888
Q ss_pred cccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcC-----CCCc
Q psy13971 81 LLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFL-----RPPR 146 (153)
Q Consensus 81 Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~-----~rp~ 146 (153)
++.....+|||+|++||++++||..+|++.|++++|.++.. ++++ +...+++..|..++..+ .||+
T Consensus 58 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~ 137 (241)
T 1iru_E 58 LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPF 137 (241)
T ss_dssp TBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCC
T ss_pred CcCccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccc
Confidence 87777899999999999999999999999999999988764 2222 33334555666777776 7888
Q ss_pred ccee
Q psy13971 147 DLGI 150 (153)
Q Consensus 147 ~~gi 150 (153)
++++
T Consensus 138 ~v~~ 141 (241)
T 1iru_E 138 GVAL 141 (241)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 8765
No 6
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=7.4e-33 Score=229.03 Aligned_cols=125 Identities=32% Similarity=0.363 Sum_probs=102.4
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
|+.++||+++|+|||||||||||||+|||++|+|+|||+++ +|||||+++| .+++
T Consensus 7 ~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~-----------------------dgVVlaaD~r--~~~~ 61 (264)
T 3h4p_A 7 VPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACK-----------------------DGVVLAVDRR--ITSK 61 (264)
T ss_dssp ---------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCS-----------------------SEEEEEEECC--CCST
T ss_pred CCccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEEC-----------------------CEEEEEEecC--ccCC
Confidence 35689999999999999999999999999999999999999 9999999999 7788
Q ss_pred cccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 81 LLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 81 Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
++.....+|||.|++||++++||+.+|++.|++++|.+++. ++++ +...+++.+|..+|..+.||+++++
T Consensus 62 li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~ 140 (264)
T 3h4p_A 62 LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSL 140 (264)
T ss_dssp TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEE
T ss_pred ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEE
Confidence 88888999999999999999999999999999999988753 2333 3444666677778877888988876
No 7
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.97 E-value=2.3e-32 Score=225.14 Aligned_cols=124 Identities=26% Similarity=0.370 Sum_probs=107.3
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
|++++||+++|+|||||||||||||+||+++|+|+|||+++ +||||++++| .+++
T Consensus 1 m~~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~-----------------------dgVVlaaD~r--~~~g 55 (263)
T 1iru_F 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSK-----------------------THAVLVALKR--AQSE 55 (263)
T ss_dssp ---CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECS-----------------------SEEEEEEECC--CSST
T ss_pred CCcCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeC-----------------------CEEEEEEecc--cccc
Confidence 89999999999999999999999999999999999999999 9999999999 7778
Q ss_pred cccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------cee--eeeeeccchhhhhhhhcCCCCccceee
Q psy13971 81 LLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TIS--VIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 81 Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~--v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
+. +..+|||+|++||++++||..+|++.|++++|.+++. +++ .+...+++.+|..||..+.||+++++.
T Consensus 56 l~--~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~l 133 (263)
T 1iru_F 56 LA--AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLL 133 (263)
T ss_dssp TB--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEE
T ss_pred cc--cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEE
Confidence 75 4779999999999999999999999999999998864 222 344456777788888888899888763
No 8
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.97 E-value=3.1e-32 Score=218.95 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=108.4
Q ss_pred CCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcc
Q psy13971 3 SSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLL 82 (153)
Q Consensus 3 ~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll 82 (153)
+++||+++|+|||||||||||||+||+++|+|+|||+++ ||||||+++| .+++++
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~~l~ 56 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAA-----------------------NGVVLATEKK--QKSILY 56 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECS-----------------------SCEEEEEECC--CCCSSB
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeC-----------------------CEEEEEEEec--CCcccc
Confidence 579999999999999999999999999999999999999 9999999999 678888
Q ss_pred cccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCccceee
Q psy13971 83 SQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 83 ~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
.....+|||+|++||++++||..+|++.|++++|.++.. ++++ +...+++.+|..+|..+.||+++++.
T Consensus 57 ~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~l 134 (233)
T 1iru_B 57 DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLL 134 (233)
T ss_dssp CSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEE
T ss_pred ccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEE
Confidence 888899999999999999999999999999999988763 2232 33445666666777777888888753
No 9
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.97 E-value=5.6e-32 Score=219.34 Aligned_cols=123 Identities=24% Similarity=0.286 Sum_probs=108.8
Q ss_pred CCCCCcceeeCCCCcchhhHHHHHHHhc-CCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcc
Q psy13971 4 SRYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLL 82 (153)
Q Consensus 4 ~~Yd~~~t~FsP~Grl~QvEYA~eAv~~-G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll 82 (153)
++||+++|+|||||||+|||||+||+++ |+|+|||+++ ||||||+++| .+++++
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~~l~ 61 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGK-----------------------DCAVIVTQKK--VPDKLL 61 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECS-----------------------SEEEEEEECC--CCCSSB
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeC-----------------------CEEEEEEeec--CCCccc
Confidence 6899999999999999999999999999 9999999999 9999999999 678888
Q ss_pred cccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCccceee
Q psy13971 83 SQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 83 ~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
.....+|||+|++||++++||..+|++.|++++|.++.. ++++ +...+++.+|..+|+.+.||+++++.
T Consensus 62 ~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~l 139 (246)
T 1iru_A 62 DSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMI 139 (246)
T ss_dssp CGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEE
T ss_pred CCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEE
Confidence 888999999999999999999999999999999998864 2232 33345566778888888899888763
No 10
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.97 E-value=7e-32 Score=218.18 Aligned_cols=123 Identities=28% Similarity=0.324 Sum_probs=108.4
Q ss_pred CCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc
Q psy13971 4 SRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS 83 (153)
Q Consensus 4 ~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~ 83 (153)
++||+++|+|||||||||||||+||+++|+|+|||+++ ||||||+++| .+++++.
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~ 57 (244)
T 1ryp_C 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMAS-----------------------DGIVLAAERK--VTSTLLE 57 (244)
T ss_dssp GGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEET-----------------------TEEEEEEECS--SCCSSBC
T ss_pred CccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeC-----------------------CEEEEEEeec--cCCcCcc
Confidence 48999999999999999999999999999999999999 9999999999 8888887
Q ss_pred -ccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------cee--eeeeeccchhhhhhhhcCCCCccceee
Q psy13971 84 -QAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TIS--VIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 84 -~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~--v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
....+|||+|++||++++||..+|++.|++++|.++.. +++ .+...+++.+|..+|..+.||+++++.
T Consensus 58 ~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~l 135 (244)
T 1ryp_C 58 QDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFI 135 (244)
T ss_dssp STTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEE
T ss_pred CCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEE
Confidence 77899999999999999999999999999999988764 222 234446667777888888889888763
No 11
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.97 E-value=4.1e-32 Score=221.01 Aligned_cols=121 Identities=40% Similarity=0.450 Sum_probs=106.6
Q ss_pred CCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccccc
Q psy13971 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQA 85 (153)
Q Consensus 6 Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~ 85 (153)
||+++|+|||||||||||||+||+++|+|+|||+++ +|||||+++| .+++++...
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~~l~~~~ 57 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGR-----------------------DIVVLGVEKK--SVAKLQDER 57 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCS-----------------------SEEEEEECCC--CCCSSSCGG
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeC-----------------------CEEEEEEeec--ccccCccCC
Confidence 999999999999999999999999999999999999 9999999999 788888778
Q ss_pred ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCccceee
Q psy13971 86 QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 86 ~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
..+|||.|++||++++||..+|++.|++++|.++.. ++++ +...+++.+|..+|..+.||+++++.
T Consensus 58 ~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~l 132 (248)
T 1iru_D 58 TVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISAL 132 (248)
T ss_dssp GGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEE
T ss_pred CCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEE
Confidence 899999999999999999999999999999998864 2222 33346666777888878888888763
No 12
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.97 E-value=9e-32 Score=220.01 Aligned_cols=124 Identities=27% Similarity=0.310 Sum_probs=108.4
Q ss_pred CCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcc
Q psy13971 3 SSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLL 82 (153)
Q Consensus 3 ~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll 82 (153)
.++||+++|+|||||||||||||+||+++|.|+|||+++ +|||||+++| .+++++
T Consensus 4 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~ 58 (254)
T 1iru_G 4 GTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCK-----------------------DGVVFGVEKL--VLSKLY 58 (254)
T ss_dssp CSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECS-----------------------SBEEEEEEEE--CSCTTB
T ss_pred ccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEEC-----------------------CEEEEEEecc--cCCCCc
Confidence 468999999999999999999999999999999999999 9999999999 888888
Q ss_pred cccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCccceee
Q psy13971 83 SQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 83 ~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
.....+|||+|++||++++||..+|++.|++++|.++.. ++++ +...+++.+|..+|+.+.||+++++.
T Consensus 59 ~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~l 136 (254)
T 1iru_G 59 EEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFM 136 (254)
T ss_dssp CTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEE
T ss_pred CcCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEE
Confidence 777889999999999999999999999999999998864 2222 44446666677777777888888763
No 13
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.97 E-value=8.6e-32 Score=220.86 Aligned_cols=125 Identities=25% Similarity=0.314 Sum_probs=108.1
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
|++ +||+++|+|||||||||||||+||+++|+|+|||+++ +|||||+++| .+++
T Consensus 1 m~~-~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~-----------------------dgVVlaaD~r--~~~g 54 (261)
T 1iru_C 1 MSR-RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILAN-----------------------DGVLLAAERR--NIHK 54 (261)
T ss_dssp -CT-TTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCS-----------------------SEEEEEECCC--CCCT
T ss_pred CCC-ccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeC-----------------------CEEEEEEecc--cCCc
Confidence 444 9999999999999999999999999999999999999 9999999999 8888
Q ss_pred cccccc-cCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ce--eeeeeeccchhhhhhhhcCCCCcccee
Q psy13971 81 LLSQAQ-NSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TI--SVIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 81 Ll~~~~-~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~--~v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
++.... .+|||.|++||++++||..+|++.|++++|.++.. ++ ..+...+++.+|..+|..+.||+++++
T Consensus 55 ~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~ 134 (261)
T 1iru_C 55 LLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSL 134 (261)
T ss_dssp TBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEE
T ss_pred ccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEE
Confidence 877665 89999999999999999999999999999988764 22 224444666777778888888988876
Q ss_pred e
Q psy13971 151 R 151 (153)
Q Consensus 151 ~ 151 (153)
.
T Consensus 135 l 135 (261)
T 1iru_C 135 L 135 (261)
T ss_dssp E
T ss_pred E
Confidence 3
No 14
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.97 E-value=9.4e-32 Score=217.42 Aligned_cols=122 Identities=31% Similarity=0.383 Sum_probs=106.2
Q ss_pred CCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccc
Q psy13971 5 RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQ 84 (153)
Q Consensus 5 ~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~ 84 (153)
+||+++|+|||||||||||||+||+++|+|+|||+++ ||||||+++| .+++++..
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~ 55 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGK-----------------------NCVVLGCERR--STLKLQDT 55 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECS-----------------------SCEEEEEECC--CSSCCBCT
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeC-----------------------CEEEEEEeec--cCccCccc
Confidence 6999999999999999999999999999999999999 9999999999 88888776
Q ss_pred c-ccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCccceee
Q psy13971 85 A-QNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 85 ~-~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
. ..+|||+|++||++++||..+|++.|++++|.++.. ++++ +...+++.+|..+|..+.||+++++.
T Consensus 56 ~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~l 132 (241)
T 1ryp_D 56 RITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTL 132 (241)
T ss_dssp TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEE
T ss_pred cCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeE
Confidence 5 889999999999999999999999999999998864 2222 33445666777777777888888753
No 15
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.97 E-value=1.9e-31 Score=217.00 Aligned_cols=122 Identities=26% Similarity=0.305 Sum_probs=105.4
Q ss_pred CCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc
Q psy13971 4 SRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS 83 (153)
Q Consensus 4 ~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~ 83 (153)
++||+++|+|||||||||||||+||+++|+|+|||+++ ||||||+++| .+++++.
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~ 56 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCN-----------------------DGVVFAVEKL--ITSKLLV 56 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEET-----------------------TEEEEEEEEE--CCCTTBC
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEEC-----------------------CEEEEEEecc--cCCCCcc
Confidence 68999999999999999999999999999999999999 9999999999 8888887
Q ss_pred ccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 84 QAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 84 ~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
....+|||.|++||++++||..+|++.|++++|.+++. ++++ +...+++.+|..||..+.||+++++
T Consensus 57 ~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~ 132 (244)
T 1ryp_G 57 PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVST 132 (244)
T ss_dssp TTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEE
T ss_pred ccccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEE
Confidence 77779999999999999999999999999999988864 2333 3333555666667766668887765
No 16
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.97 E-value=1.8e-31 Score=224.23 Aligned_cols=123 Identities=26% Similarity=0.304 Sum_probs=107.9
Q ss_pred CCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcc
Q psy13971 3 SSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLL 82 (153)
Q Consensus 3 ~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll 82 (153)
.++||+++|+|||+|||||||||+|||++|+|+|||+++ +|||||+++| .+++++
T Consensus 5 ~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~k-----------------------dGVVlAaD~r--~t~gl~ 59 (288)
T 3nzj_F 5 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCN-----------------------DGVVFAVEKL--ITSKLL 59 (288)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEET-----------------------TEEEEEEEEE--ECCTTB
T ss_pred cCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEEC-----------------------CEEEEEEcCC--cccCCc
Confidence 578999999999999999999999999999999999999 9999999999 888888
Q ss_pred cccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 83 SQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 83 ~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
.....+|||.|++||+++++|+.+|++.|++++|.+++. ++++ +...+++.+|..||..+.||+++++
T Consensus 60 ~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~ 136 (288)
T 3nzj_F 60 VPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVST 136 (288)
T ss_dssp CTTCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEE
T ss_pred cccccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 777889999999999999999999999999999998863 2333 3444566667677777788888775
No 17
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.97 E-value=3.5e-31 Score=215.43 Aligned_cols=124 Identities=26% Similarity=0.293 Sum_probs=104.6
Q ss_pred CCCCCCCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC
Q psy13971 1 MSSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP 80 (153)
Q Consensus 1 m~~~~Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~ 80 (153)
|+ ++||+++|+|||||||||||||+||+++|.|+|||+++ +|||||+++| .+++
T Consensus 1 ~~-~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~~ 54 (250)
T 1ryp_B 1 MT-DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKAT-----------------------NGVVIATEKK--SSSP 54 (250)
T ss_dssp CC-CCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEET-----------------------TEEEEEEECC--CSCS
T ss_pred CC-CcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEEC-----------------------CEEEEEEecc--CCCc
Confidence 44 49999999999999999999999999999999999999 9999999999 6788
Q ss_pred cccccccCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-c-------eee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 81 LLSQAQNSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-T-------ISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 81 Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-~-------~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
++.....+|||.|++||++++||..+|++.|++++|.+++. . +++ +....++..|..+|..+.||+++++
T Consensus 55 l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~ 134 (250)
T 1ryp_B 55 LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSL 134 (250)
T ss_dssp SBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEE
T ss_pred cccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEE
Confidence 88888999999999999999999999999999999987754 2 221 2222455555566665667877765
No 18
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.96 E-value=1.2e-30 Score=210.68 Aligned_cols=119 Identities=26% Similarity=0.342 Sum_probs=103.8
Q ss_pred CCcceeeCCCCcchhhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccccc
Q psy13971 7 DRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQAQ 86 (153)
Q Consensus 7 d~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~~ 86 (153)
|+++|+|||||||||||||+||+++|+|+|||+++ ||||||+++| .+++++....
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~ 55 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATK-----------------------EGVVLGVEKR--ATSPLLESDS 55 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECS-----------------------SCEEEEEECC--CSSTTBCGGG
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEEC-----------------------CEEEEEEeec--CCCcCccCcc
Confidence 78999999999999999999999999999999999 9999999999 8888887778
Q ss_pred cCceEEecCcEEEEEeccHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcC------CCCcccee
Q psy13971 87 NSKLSMLNDHVVMAFAGKSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFL------RPPRDLGI 150 (153)
Q Consensus 87 ~~KIf~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~------~rp~~~gi 150 (153)
.+|||.|++||++++||..+|++.|++++|.++.. ++++ +...+++.+|..+|..+ .||+++++
T Consensus 56 ~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~ 134 (242)
T 1ryp_E 56 IEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVAL 134 (242)
T ss_dssp CCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEE
T ss_pred CCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEE
Confidence 99999999999999999999999999999988764 2222 33345566677777777 88888765
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.83 E-value=4.2e-21 Score=157.85 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=82.9
Q ss_pred eeCCCCcch-hhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccccccCce
Q psy13971 12 VFSPDGHLL-QVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQAQNSKL 90 (153)
Q Consensus 12 ~FsP~Grl~-QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~~~~KI 90 (153)
.|||+|++. |||||+||+++|+|+|||+++ +|||||+++| . ...+||
T Consensus 6 ~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~-----------------------dgVVlaaD~r--s-------~~~~KI 53 (259)
T 1q5q_A 6 YASAEQIMRDRSELARKGIARGRSVVVLTFR-----------------------DGVLFVAENP--S-------TALHKV 53 (259)
T ss_dssp ---CHHHHHHHHHHHHHHHHTSCCEEEEECS-----------------------SEEEEEECCS--C-------SSSCSE
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcEEEEEeC-----------------------CEEEEEEecC--C-------CCcCcE
Confidence 589999995 999999999999999999999 9999999998 1 467999
Q ss_pred EEecCcEEEEEeccHHHHHHHHHHHHhhhcC--------ceee--eeeeccc-hhhhhhhhcCCCCccceee
Q psy13971 91 SMLNDHVVMAFAGKSLCLIALVALWYNEKDK--------TISV--IYYGGKN-SSALATELFLRPPRDLGIR 151 (153)
Q Consensus 91 f~I~~~i~~~~aG~~~D~~~Lv~~~r~ea~~--------~~~v--~~~~~~~-~~q~~t~~~~~rp~~~gi~ 151 (153)
|.|++||++++||+.+|++.|++++|.+++. ++++ +...+++ .+|..+ ...||+++++.
T Consensus 54 ~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~l 123 (259)
T 1q5q_A 54 SELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEIC 123 (259)
T ss_dssp EEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEE
T ss_pred EEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEE
Confidence 9999999999999999999999998887753 2333 2222333 333444 35678887753
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.74 E-value=6.1e-18 Score=139.05 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=77.5
Q ss_pred hhHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccccccCceEEecCcEEEE
Q psy13971 21 QVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMA 100 (153)
Q Consensus 21 QvEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~~~~KIf~I~~~i~~~ 100 (153)
++|||+||+++|+|+|||+++ ||||||++|| . ...+|||+|++||+|+
T Consensus 16 r~EYA~~av~~GtT~vgi~~k-----------------------dgVVlaadkr--~-------~~~~KI~~I~d~i~~~ 63 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYA-----------------------GGVLFVAENP--S-------RSLQKISELYDRVGFA 63 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEET-----------------------TEEEEEEECC--C-------SSSCSEEEEETTEEEE
T ss_pred chHHHHHHHhCCCcEEEEEeC-----------------------CEEEEEEeCC--C-------CCCCCeEEECCCEEEE
Confidence 689999999999999999999 9999999998 2 4679999999999999
Q ss_pred EeccHHHHHHHHHHHHhhhc--------Cceee--eeeecc-chhhhhhhhcCCCCcccee
Q psy13971 101 FAGKSLCLIALVALWYNEKD--------KTISV--IYYGGK-NSSALATELFLRPPRDLGI 150 (153)
Q Consensus 101 ~aG~~~D~~~Lv~~~r~ea~--------~~~~v--~~~~~~-~~~q~~t~~~~~rp~~~gi 150 (153)
++|+.+|++.|.++++++++ .++++ +...++ +.+|..|| +.||+++++
T Consensus 64 ~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~ 122 (248)
T 3mi0_A 64 AAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVEL 122 (248)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEE
T ss_pred EccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEE
Confidence 99999999999998877632 22332 222233 44566666 778888876
No 21
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.58 E-value=4.6e-16 Score=123.43 Aligned_cols=101 Identities=12% Similarity=0.055 Sum_probs=80.8
Q ss_pred HHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEecc
Q psy13971 26 QEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGK 104 (153)
Q Consensus 26 ~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~ 104 (153)
+||+++|+|+|||+++ ||||||+++| .++ +++.....+|||+|++||++++||.
T Consensus 2 ~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~ 56 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFE-----------------------GGVVIAADML--GSYGSLARFRNISRIMRVNNSTMLGASGD 56 (219)
T ss_dssp CSCCSEECCCEEEEET-----------------------TEEEEEEECC--EEETTEEEECSCCCEEEETTTEEEEEEEE
T ss_pred CCCccCCceEEEEEeC-----------------------CEEEEEECCc--cccCcEEecCCCCceEEeCCCEEEEeccC
Confidence 3688999999999999 9999999999 564 6777788999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC--------ceeeeeeeccchhhhhhhhcCCCCccceee
Q psy13971 105 SLCLIALVALWYNEKDK--------TISVIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 105 ~~D~~~Lv~~~r~ea~~--------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
.+|++.|++++|.+++. ++++.......+....+++.+.||+++++.
T Consensus 57 ~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~l 111 (219)
T 1iru_N 57 YADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMV 111 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEE
Confidence 99999999999987653 223333333333344567777889888763
No 22
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.57 E-value=6.8e-16 Score=129.56 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=54.5
Q ss_pred hHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC-cccccccCceEEecCcEEEE
Q psy13971 22 VEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP-LLSQAQNSKLSMLNDHVVMA 100 (153)
Q Consensus 22 vEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~-Ll~~~~~~KIf~I~~~i~~~ 100 (153)
+|||++ +++|.|+|||+++ +|||||+++| .++. ++..+..+|||+|++||+++
T Consensus 48 ~~ya~~-v~~GtTiVgi~~k-----------------------dGVVlAaD~r--~t~g~li~~~~~~KI~~i~d~i~~~ 101 (291)
T 2jay_A 48 AGGDAQ-LPHGTTIVALKYP-----------------------GGVVMAGDRR--STQGNMISGRDVRKVYITDDYTATG 101 (291)
T ss_dssp -----------CCEEEEEET-----------------------TEEEEEECCC----------CCCCCCEEEEETTEEEE
T ss_pred cccccc-ccCCcEEEEEEEC-----------------------CEEEEEECCC--ccCCCeeecCCcccEEEeCCcEEEE
Confidence 799999 9999999999999 9999999999 6665 66667899999999999999
Q ss_pred EeccHHHHHHHHHHHHhhhcC
Q psy13971 101 FAGKSLCLIALVALWYNEKDK 121 (153)
Q Consensus 101 ~aG~~~D~~~Lv~~~r~ea~~ 121 (153)
+||..+|++.|++++|.+++.
T Consensus 102 ~aG~~aD~~~l~~~lr~~~~~ 122 (291)
T 2jay_A 102 IAGTAAVAVEFARLYAVELEH 122 (291)
T ss_dssp EESCHHHHHHHHHHHHHHHHH
T ss_pred EcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863
No 23
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.56 E-value=2.8e-15 Score=119.35 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=59.7
Q ss_pred HHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEeccH
Q psy13971 27 EAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGKS 105 (153)
Q Consensus 27 eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~~ 105 (153)
.++++|+|+|||+++ ||||||+++| .++ +++..+..+|||+|++||++++||..
T Consensus 3 ~~~~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~ 57 (217)
T 1yar_H 3 QTLETGTTTVGITLK-----------------------DAVIMATERR--VTMENFIMHKNGKKLFQIDTYTGMTIAGLV 57 (217)
T ss_dssp ------CCEEEEEET-----------------------TEEEEEECCC--EEETTEEEESCCCCEEEEETTEEEEEEECH
T ss_pred CCCCCCccEEEEEeC-----------------------CEEEEEEcCC--CCCCCEEecCccCCeEEeCCCEEEEeCcCH
Confidence 467899999999999 9999999999 665 68877899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q psy13971 106 LCLIALVALWYNEKDK 121 (153)
Q Consensus 106 ~D~~~Lv~~~r~ea~~ 121 (153)
+|++.|++++|.+++.
T Consensus 58 aD~~~l~~~~~~~~~~ 73 (217)
T 1yar_H 58 GDAQVLVRYMKAELEL 73 (217)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 24
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.55 E-value=1.1e-15 Score=128.57 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=80.1
Q ss_pred HHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEec
Q psy13971 25 AQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAG 103 (153)
Q Consensus 25 A~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG 103 (153)
|+||+++|.|+|||+++ +|||||+++| .++ +++..+..+|||+|++||++++||
T Consensus 58 a~~Av~~GtTiVgIk~k-----------------------dGVVlAaD~r--~t~G~li~~~~~~KI~~I~~~i~~~~aG 112 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYK-----------------------GGVLLAGDRR--ATQGNLIASRDVEAVYVTDEYSAAGIAG 112 (294)
T ss_dssp --CCSCBCCCEEEEECS-----------------------SCEEEEECCC--EEETTEEEESCCCCEEEEETTEEEEEEE
T ss_pred HHHHHhcCceEEEEEEC-----------------------CEEEEEEcCc--cccCceeecCCcceEEEECCcEEEEEee
Confidence 89999999999999999 9999999999 664 788788999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhcC-------ceee--eeeeccchhhhhhhhcCCCCcccee
Q psy13971 104 KSLCLIALVALWYNEKDK-------TISV--IYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 104 ~~~D~~~Lv~~~r~ea~~-------~~~v--~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
..+|++.|+++++.+++. ++++ +...+++.+|..++.. .||+++++
T Consensus 113 ~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~-~rp~~v~l 167 (294)
T 1q5r_H 113 TAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVVP 167 (294)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH-TTTTCEEE
T ss_pred cHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhh-cCCcceEE
Confidence 999999999999998864 2222 3333455566655543 67777654
No 25
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.53 E-value=6.3e-15 Score=114.67 Aligned_cols=96 Identities=11% Similarity=0.018 Sum_probs=78.4
Q ss_pred hcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-Cc-ccccccCceEEe-cCcEEEEEeccHH
Q psy13971 30 RKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PL-LSQAQNSKLSML-NDHVVMAFAGKSL 106 (153)
Q Consensus 30 ~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~L-l~~~~~~KIf~I-~~~i~~~~aG~~~ 106 (153)
.+|.|+|||+++ ||||||+++| .++ .+ +.++..+|||+| ++|+++++||..+
T Consensus 3 ~~GtTivgi~~~-----------------------dgVvlaaD~r--~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~a 57 (180)
T 2z3b_A 3 FHATTIFAVQHK-----------------------GRSAMSGDGQ--VTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVA 57 (180)
T ss_dssp BCCCCEEEEEET-----------------------TEEEEEECCC--EEETTTEEEESCCCCEEEETTTTEEEEECSCHH
T ss_pred CCCeEEEEEEEC-----------------------CEEEEEECCC--ccCCCceEecCCCCcEEEECCCCEEEEeCchHH
Confidence 579999999999 9999999999 665 57 778899999999 9999999999999
Q ss_pred HHHHHHHHHHhhhcCceeeeeeeccchhhhhhhhcCCCCcccee
Q psy13971 107 CLIALVALWYNEKDKTISVIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 107 D~~~Lv~~~r~ea~~~~~v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
|++.|++++|.+++.....+.....+-+|..+|..+.||+++++
T Consensus 58 D~~~l~~~~~~~~~~y~g~~~~~~~~l~~~~~~~~~~rp~~~~~ 101 (180)
T 2z3b_A 58 DAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAML 101 (180)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTGGGCCCCE
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhCcCcceEEE
Confidence 99999999999987654211112234466677777788887765
No 26
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.53 E-value=8.2e-15 Score=115.56 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=74.1
Q ss_pred HhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccc-cccCceEEecCcEEEEEeccHHH
Q psy13971 29 VRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQ-AQNSKLSMLNDHVVMAFAGKSLC 107 (153)
Q Consensus 29 v~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~-~~~~KIf~I~~~i~~~~aG~~~D 107 (153)
+++|+|+|||+++ +|||||+++| .+++++.. +..+|||+|++||++++||..+|
T Consensus 6 v~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 60 (213)
T 1iru_M 6 VFNGGTILAIAGE-----------------------DFAIVASDTR--LSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGD 60 (213)
T ss_dssp CCCCCEEEEEEET-----------------------TEEEEEEECC--EEETTEEEESCCCCEEEEETTEEEEEEECHHH
T ss_pred cCCCCcEEEEEeC-----------------------CEEEEEECCC--cccCCEEecCCCCcEEEcCCCEEEEccccHHH
Confidence 4789999999999 9999999999 77776554 58899999999999999999999
Q ss_pred HHHHHHHHHhhhcC-------ceeeeeeeccchhhhhhhhcCCCCcccee
Q psy13971 108 LIALVALWYNEKDK-------TISVIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 108 ~~~Lv~~~r~ea~~-------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
++.|++++|.+++. ++++-......+....+++ .||+++++
T Consensus 61 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r--~~P~~v~~ 108 (213)
T 1iru_M 61 CLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRR--FFPYYVYN 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTT--TSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhC--CCCceEEE
Confidence 99999999998864 2333333222233334544 57777765
No 27
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.51 E-value=5.6e-15 Score=118.52 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=79.6
Q ss_pred HHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEecc
Q psy13971 26 QEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGK 104 (153)
Q Consensus 26 ~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~ 104 (153)
+||+++|+|+|||+++ ||||||+++| .++ .++..+..+|||+|++||++++||.
T Consensus 2 ~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~KI~~i~~~i~~~~aG~ 56 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYD-----------------------NGVIIAADNL--GSYGSLLRFNGVERLIPVGDNTVVGISGD 56 (233)
T ss_dssp CCCCEEECCEEEEEET-----------------------TEEEEEEECC--EEETTEEEESCCCCEEEETTTEEEEEEEE
T ss_pred cccccCCceEEEEEEC-----------------------CEEEEEEcCc--cccCCeeecCCcCceEEeCCCEEEEcccc
Confidence 3678999999999999 9999999999 554 5777778999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC------------ceeeeeeeccchhhhhhhhcCCCCccceee
Q psy13971 105 SLCLIALVALWYNEKDK------------TISVIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 105 ~~D~~~Lv~~~r~ea~~------------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
.+|++.|++++|.++.. ++++-......+....+++.+.||+++++.
T Consensus 57 ~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~l 115 (233)
T 1ryp_N 57 ISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAII 115 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999886642 223333333333334567777788888763
No 28
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.50 E-value=5.2e-15 Score=121.73 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=81.8
Q ss_pred hHHHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEE
Q psy13971 22 VEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMA 100 (153)
Q Consensus 22 vEYA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~ 100 (153)
.+.+++|+++|.|+|||+++ ||||||+++| .++ .++..+..+|||.|++||+++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~-----------------------dgVVlAaD~r--~t~g~~i~~~~~~KI~~i~d~i~~~ 85 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYD-----------------------NGVIIAADNL--GSYGSLLRFNGVERLIPVGDNTVVG 85 (266)
T ss_dssp ---CCCCCEEECCEEEEEET-----------------------TEEEEEEECC--EEETTEEEECCCCCEEECTTSEEEE
T ss_pred hhhhccCcccCceEEEEEEC-----------------------CEEEEEEcCC--cccCceeecCCcCcEEEcCCCEEEE
Confidence 57788999999999999999 9999999999 554 577777899999999999999
Q ss_pred EeccHHHHHHHHHHHHhhhcC------------ceeeeeeeccchhhhhhhhcCCCCccceee
Q psy13971 101 FAGKSLCLIALVALWYNEKDK------------TISVIYYGGKNSSALATELFLRPPRDLGIR 151 (153)
Q Consensus 101 ~aG~~~D~~~Lv~~~r~ea~~------------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi~ 151 (153)
+||..+|++.|++++|.+++. ++++..+....+....+++.+.||+++++.
T Consensus 86 ~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~l 148 (266)
T 1g0u_M 86 ISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAII 148 (266)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred eccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEE
Confidence 999999999999999886542 223333333333344667777889888763
No 29
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.48 E-value=2.2e-14 Score=112.45 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=72.7
Q ss_pred hcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccccc-ccCceEEecCcEEEEEeccHHHH
Q psy13971 30 RKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQA-QNSKLSMLNDHVVMAFAGKSLCL 108 (153)
Q Consensus 30 ~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~-~~~KIf~I~~~i~~~~aG~~~D~ 108 (153)
.+|+|+|||+++ ||||||+++| .+++++... ..+|||+|++||++++||..+|+
T Consensus 6 ~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 60 (205)
T 1iru_J 6 YNGGAVMAMKGK-----------------------NCVAIAADRR--FGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDV 60 (205)
T ss_dssp SSCCEEEEEECS-----------------------SEEEEEEECC--EEETTEEEESCCCCEEECSTTEEEECCSCHHHH
T ss_pred CCCCeEEEEEeC-----------------------CEEEEEECCc--cccCCeEeecCCccEEEeCCCEEEEccccHHHH
Confidence 689999999999 9999999999 777877654 88999999999999999999999
Q ss_pred HHHHHHHHhhhcC-------ceeeeeeeccchhhhhhhhcCCCCcccee
Q psy13971 109 IALVALWYNEKDK-------TISVIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 109 ~~Lv~~~r~ea~~-------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
+.|++++|.+++. ++++.......+....+|+ ..|+++++
T Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r--~~P~~v~~ 107 (205)
T 1iru_J 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKR--FGPYYTEP 107 (205)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTT--TSCCSCCC
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc--CCCceEEE
Confidence 9999999998764 2333333222233334554 23776654
No 30
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.47 E-value=4.2e-14 Score=116.92 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=58.7
Q ss_pred HHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEec
Q psy13971 25 AQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAG 103 (153)
Q Consensus 25 A~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG 103 (153)
.+||+++|+|+|||+++ ||||||+++| .++ .+......+|||.|+|||++++||
T Consensus 22 ~~kav~~GtTivgi~~k-----------------------dGVVlAaD~r--~t~g~li~~~~~~KI~~I~d~i~~~~aG 76 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFN-----------------------NGVVIAADTR--STQGPIVADKNCAKLHRISPKIWCAGAG 76 (261)
T ss_dssp --------CCEEEEEET-----------------------TEEEEEEECC--EEETTEEEETTCCCEEEEETTEEEEEEE
T ss_pred CCcccccCceEEEEEEC-----------------------CEEEEEEcCC--cccCCeeccCCcceEEEEcCCEEEEecc
Confidence 48999999999999999 9999999999 665 566667899999999999999999
Q ss_pred cHHHHHHHHHHHHhhhcC
Q psy13971 104 KSLCLIALVALWYNEKDK 121 (153)
Q Consensus 104 ~~~D~~~Lv~~~r~ea~~ 121 (153)
..+|++.|++++|.+++.
T Consensus 77 ~~aD~~~l~~~lr~~~~~ 94 (261)
T 3nzj_H 77 TAADTEAVTQLIGSNIEL 94 (261)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999988864
No 31
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.47 E-value=3.6e-14 Score=111.45 Aligned_cols=71 Identities=10% Similarity=0.167 Sum_probs=65.3
Q ss_pred HHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC-cccccccCceEEecCcEEEEEecc
Q psy13971 26 QEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP-LLSQAQNSKLSMLNDHVVMAFAGK 104 (153)
Q Consensus 26 ~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~-Ll~~~~~~KIf~I~~~i~~~~aG~ 104 (153)
+||+++|+|+|||+++ ||||||+++| .+++ +...+..+|||+|++||++++||.
T Consensus 3 ~~av~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~ 57 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFK-----------------------DGVILGADSR--TTTGAYIANRVTDKLTRVHDKIWCCRSGS 57 (205)
T ss_dssp TTCCBCCCCEEEEEET-----------------------TEEEEEECCC--EEETTEEEESSCCCEEEEETTEEEEEEEB
T ss_pred CCCCcCCceEEEEEeC-----------------------CEEEEEEcCC--cccCcEEEcCCcCceEEcCCCEEEEccCC
Confidence 6889999999999999 9999999999 6766 666678899999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC
Q psy13971 105 SLCLIALVALWYNEKDK 121 (153)
Q Consensus 105 ~~D~~~Lv~~~r~ea~~ 121 (153)
.+|++.|++++|.+++.
T Consensus 58 ~aD~~~l~~~~~~~~~~ 74 (205)
T 1ryp_H 58 AADTQAIADIVQYHLEL 74 (205)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 32
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.46 E-value=5e-14 Score=110.38 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=73.1
Q ss_pred HhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccccc-ccCceEEecCcEEEEEeccHHH
Q psy13971 29 VRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQA-QNSKLSMLNDHVVMAFAGKSLC 107 (153)
Q Consensus 29 v~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~~-~~~KIf~I~~~i~~~~aG~~~D 107 (153)
+.+|+|+|||+++ ||||||+++| .+++++... ..+|||+|+ ||++++||..+|
T Consensus 5 ~~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD 58 (204)
T 1ryp_J 5 SINGGIVVAMTGK-----------------------DCVAIACDLR--LGSQSLGVSNKFEKIFHYG-HVFLGITGLATD 58 (204)
T ss_dssp GSSCCEEEEEECS-----------------------SEEEEEEECC--EEETTEEEESCCCCEEEET-TEEEEEEECHHH
T ss_pred CCCCCeEEEEEeC-----------------------CEEEEEEcCC--cccCCEEeeCCcceEEEeC-CEEEEeeEcHHH
Confidence 4689999999999 9999999999 788877664 889999999 999999999999
Q ss_pred HHHHHHHHHhhhcC-------ceeeeeeeccchhhhhhhhcCCCCcccee
Q psy13971 108 LIALVALWYNEKDK-------TISVIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 108 ~~~Lv~~~r~ea~~-------~~~v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
++.|++++|.+++. ++++-.+....+....+|+.+ |+++++
T Consensus 59 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~~~~--P~~v~~ 106 (204)
T 1ryp_J 59 VTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFG--PYFVGP 106 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTS--CCCEEE
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCC--CceEEE
Confidence 99999999998764 233333333333333555533 777665
No 33
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.46 E-value=4.4e-14 Score=108.35 Aligned_cols=93 Identities=11% Similarity=-0.007 Sum_probs=71.9
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEe-cCcEEEEEeccHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSML-NDHVVMAFAGKSLCLIA 110 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I-~~~i~~~~aG~~~D~~~ 110 (153)
.|+||++++ ||||||+++| .++ +++.++..+|||+| ++|+++++||..+|++.
T Consensus 1 tt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~ 55 (171)
T 1m4y_A 1 TTILVVRRN-----------------------GQTVMGGDGQ--VTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMT 55 (171)
T ss_dssp CCEEEEEET-----------------------TEEEEEECCC--EEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHH
T ss_pred CeEEEEEEC-----------------------CEEEEEECCC--cccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHH
Confidence 478899999 9999999999 664 67777889999999 99999999999999999
Q ss_pred HHHHHHhhhcCceeeeeeeccchhhhhhhhcCCCCcccee
Q psy13971 111 LVALWYNEKDKTISVIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 111 Lv~~~r~ea~~~~~v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
|++++|.|++.....+....++-.+..+|..+.||+++++
T Consensus 56 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 95 (171)
T 1m4y_A 56 LFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALL 95 (171)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTGGGCCCEE
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9999999998643222222333344445544456777655
No 34
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.46 E-value=3.9e-14 Score=118.79 Aligned_cols=73 Identities=10% Similarity=0.107 Sum_probs=59.1
Q ss_pred HHHHHHhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEe
Q psy13971 24 YAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFA 102 (153)
Q Consensus 24 YA~eAv~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~a 102 (153)
++..++++|.|+|||+++ +|||||+++| .++ .++..+..+|||.|++||++++|
T Consensus 67 ~~~~~v~~GtT~vgik~~-----------------------dGVVlAaD~r--~t~G~li~~~~~~KI~~I~d~i~~~~a 121 (287)
T 3nzj_K 67 DCKIKIAHGTTTLAFRFQ-----------------------GGIIVAVDSR--ATAGNWVASQTVKKVIEINPFLLGTMA 121 (287)
T ss_dssp ---------CCEEEEEET-----------------------TEEEEEECCC--EEETTEEEESCCCCEEEEETTEEEECE
T ss_pred chhhheccCceEEEEEEC-----------------------CEEEEEEccc--cccCceeecCCcceEEEEcCcEEEEec
Confidence 788999999999999999 9999999999 564 67777899999999999999999
Q ss_pred ccHHHHHHHHHHHHhhhcC
Q psy13971 103 GKSLCLIALVALWYNEKDK 121 (153)
Q Consensus 103 G~~~D~~~Lv~~~r~ea~~ 121 (153)
|..+|++.|++++|.+++.
T Consensus 122 G~~AD~~~l~~~lr~~~~~ 140 (287)
T 3nzj_K 122 GGAADCQFWETWLGSQCRL 140 (287)
T ss_dssp ECHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988864
No 35
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.45 E-value=7e-14 Score=109.40 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=58.3
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ ||||||+++| .++ ++...+..+|||+|++||++++||..+|++.|
T Consensus 1 tt~vgi~~~-----------------------dgVvlaad~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 55 (202)
T 1j2q_H 1 TTTVGLVCK-----------------------DGVVMATEKR--ATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFL 55 (202)
T ss_dssp CCEEEEEET-----------------------TEEEEEEECC--EEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHH
T ss_pred CcEEEEEeC-----------------------CEEEEEECCC--cCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHH
Confidence 478999999 9999999999 665 67777899999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 56 ~~~~~~~~~~ 65 (202)
T 1j2q_H 56 ARIIKIEANL 65 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 36
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.45 E-value=7e-14 Score=107.67 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=72.1
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC-cccccccCceEEe-cCcEEEEEeccHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP-LLSQAQNSKLSML-NDHVVMAFAGKSLCLIA 110 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~-Ll~~~~~~KIf~I-~~~i~~~~aG~~~D~~~ 110 (153)
.|+|||+++ ||||||+++| .++. ++.++..+|||+| ++|+++++||..+|++.
T Consensus 1 tT~vgi~~~-----------------------dgVvlaaD~r--~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~ 55 (174)
T 1g3k_A 1 TTIVSVRRN-----------------------GQVVVGGDGQ--VSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFT 55 (174)
T ss_dssp CCEEEEEET-----------------------TEEEEEECCC--EEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHH
T ss_pred CeEEEEEEC-----------------------CEEEEEECCC--CccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHH
Confidence 478999999 9999999999 6654 6777889999999 99999999999999999
Q ss_pred HHHHHHhhhcCceeeeeeeccchhhhhhhhcCCCCccce
Q psy13971 111 LVALWYNEKDKTISVIYYGGKNSSALATELFLRPPRDLG 149 (153)
Q Consensus 111 Lv~~~r~ea~~~~~v~~~~~~~~~q~~t~~~~~rp~~~g 149 (153)
|++++|.|++...-.+....++-+|..+|..+.||.+..
T Consensus 56 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~ 94 (174)
T 1g3k_A 56 LFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAM 94 (174)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTGGGCCCE
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhccCcCcceEE
Confidence 999999998765322222234556666776566665443
No 37
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.42 E-value=1.5e-13 Score=106.93 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=56.7
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc-ccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS-QAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~-~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ ||||||+++| .+++++. .+..+|||+|++||++++||..+|++.|
T Consensus 2 tt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 56 (198)
T 1ryp_K 2 DIILGIRVQ-----------------------DSVILASSKA--VTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQF 56 (198)
T ss_dssp CCEEEEECS-----------------------SCEEEEEECC--EEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHH
T ss_pred ceEEEEEEC-----------------------CEEEEEECCC--cccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHH
Confidence 478888888 9999999999 6766655 4688999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 57 ~~~~~~~~~~ 66 (198)
T 1ryp_K 57 AEYIQANIQL 66 (198)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 38
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.42 E-value=1.4e-13 Score=109.94 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=61.7
Q ss_pred HhcCCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcc-cccccCceEEecCcEEEEEeccHHH
Q psy13971 29 VRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLL-SQAQNSKLSMLNDHVVMAFAGKSLC 107 (153)
Q Consensus 29 v~~G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll-~~~~~~KIf~I~~~i~~~~aG~~~D 107 (153)
+++|+|+|||+++ ||||||+++| .+++++ ..+..+|||+|++||++++||..+|
T Consensus 6 v~~Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD 60 (222)
T 1ryp_M 6 GDNGGTILGIAGE-----------------------DFAVLAGDTR--NITDYSINSRYEPKVFDCGDNIVMSANGFAAD 60 (222)
T ss_dssp CCCCCEEEEEECS-----------------------SCEEEEEECC--EEETTEEEESCCCCCEEEETTEEEEEEESHHH
T ss_pred ccCCccEEEEEeC-----------------------CEEEEEEecc--cccCCEecCCCcCcEEEeCCCEEEEccccHHH
Confidence 5789999999999 9999999999 777765 4578999999999999999999999
Q ss_pred HHHHHHHHHhhhcC
Q psy13971 108 LIALVALWYNEKDK 121 (153)
Q Consensus 108 ~~~Lv~~~r~ea~~ 121 (153)
++.|++++|.+++.
T Consensus 61 ~~~l~~~~~~~~~~ 74 (222)
T 1ryp_M 61 GDALVKRFKNSVKW 74 (222)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 39
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.42 E-value=1e-13 Score=108.62 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=58.2
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC-cccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP-LLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~-Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ ||||||+++| .+++ +...+..+|||+|++||++++||..+|++.|
T Consensus 1 tt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 55 (205)
T 1iru_H 1 TTIMAVQFD-----------------------GGVVLGADSR--TTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 55 (205)
T ss_dssp CCEEEEEET-----------------------TEEEEEECCC--EEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHH
T ss_pred CcEEEEEeC-----------------------CEEEEEEcCC--cccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHH
Confidence 478999999 9999999999 7776 7777788999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 56 ~~~~~~~~~~ 65 (205)
T 1iru_H 56 ADAVTYQLGF 65 (205)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 40
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.41 E-value=1.1e-13 Score=110.48 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=58.5
Q ss_pred CCceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC-cccccccCceEEecCcEEEEEeccHHHHHH
Q psy13971 32 GSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP-LLSQAQNSKLSMLNDHVVMAFAGKSLCLIA 110 (153)
Q Consensus 32 G~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~-Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~ 110 (153)
|+|+|||+++ +|||||+++| .++. +......+|||.|++||++++||+.+|++.
T Consensus 1 Gtt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 55 (219)
T 3h4p_a 1 MTTTVGLICD-----------------------DAVILATDKR--ASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQA 55 (219)
T ss_dssp -CCEEEEEET-----------------------TEEEEECCCC--EEETTEEEETTCCCEEEEETTEEEECCSCHHHHHH
T ss_pred CccEEEEEEC-----------------------CEEEEEEcCC--cccCCEeeccccceeEEecCCEEEEeeEcHHHHHH
Confidence 7899999999 9999999999 6654 566789999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q psy13971 111 LVALWYNEKDK 121 (153)
Q Consensus 111 Lv~~~r~ea~~ 121 (153)
|++++|.+++.
T Consensus 56 l~~~~~~~~~~ 66 (219)
T 3h4p_a 56 IVRLLIAEAKL 66 (219)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 41
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.40 E-value=2.3e-13 Score=106.42 Aligned_cols=64 Identities=8% Similarity=0.193 Sum_probs=58.0
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ ||||||+++| .++ +++.....+|||+|++||++++||..+|++.|
T Consensus 2 tt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 56 (201)
T 1iru_K 2 EYLIGIQGP-----------------------DYVLVASDRV--AASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQF 56 (201)
T ss_dssp CCEEEEECS-----------------------SEEEEEEECC--EEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHH
T ss_pred ceEEEEEeC-----------------------CEEEEEEcCc--cccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHH
Confidence 478888888 9999999999 665 67777899999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 57 ~~~~~~~~~~ 66 (201)
T 1iru_K 57 AEYIQKNVQL 66 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 42
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.40 E-value=1.4e-13 Score=110.79 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=72.9
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ ||||||+++| .++ +++.....+|||+|++||++++||..+|++.|
T Consensus 1 tT~vgi~~~-----------------------dgVVlaaD~r--~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l 55 (235)
T 1q5q_H 1 TTIVALTYK-----------------------GGVLLAGDRR--ATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIEL 55 (235)
T ss_dssp CCEEEEECS-----------------------SCEEEEECCC--EEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHH
T ss_pred CeEEEEEEC-----------------------CEEEEEECCC--CCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHH
Confidence 478999999 9999999999 664 78888899999999999999999999999999
Q ss_pred HHHHHhhhcC-------cee--eeeeeccchhhhhhhhcCCCCcccee
Q psy13971 112 VALWYNEKDK-------TIS--VIYYGGKNSSALATELFLRPPRDLGI 150 (153)
Q Consensus 112 v~~~r~ea~~-------~~~--v~~~~~~~~~q~~t~~~~~rp~~~gi 150 (153)
++++|.+++. +++ .+...+++.+|..++.. .||+++++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~-~rp~~v~~ 102 (235)
T 1q5q_H 56 VRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVVP 102 (235)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHH-TTTCCEEE
T ss_pred HHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhh-hcccceEE
Confidence 9999998864 222 23333555566655553 67777654
No 43
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.37 E-value=4.6e-13 Score=105.63 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=58.4
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ +|||||+++| .++ +++..+..+|||+|++||++++||..+|++.|
T Consensus 1 tt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 55 (212)
T 1ryp_L 1 TTTLAFRFQ-----------------------GGIIVAVDSR--ATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFW 55 (212)
T ss_dssp CCEEEEEET-----------------------TEEEEEECCC--EEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHH
T ss_pred CcEEEEEeC-----------------------CEEEEEEcCC--cccCCeEecCcccceeeeCCcEEEEccccHHHHHHH
Confidence 478999999 9999999999 665 78877899999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 56 ~~~~~~~~~~ 65 (212)
T 1ryp_L 56 ETWLGSQCRL 65 (212)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 44
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.35 E-value=5.4e-13 Score=103.92 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=57.7
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCC-cccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSP-LLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~-Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ +|||||+++| .+++ ++.....+|||+|++||++++||..+|++.|
T Consensus 1 TT~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 55 (199)
T 3unf_N 1 TTIMAVEFD-----------------------GGVVVGSDSR--VSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAI 55 (199)
T ss_dssp CEEEEEECS-----------------------SCEEEEECCC--EEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHH
T ss_pred CeEEEEEeC-----------------------CeEEEEECCc--ccCCceeEccccCceEEcCCCEEEEecccHHHHHHH
Confidence 478899998 9999999999 6655 7677899999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 56 ~~~~~~~~~~ 65 (199)
T 3unf_N 56 ADMAAYQLEL 65 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988864
No 45
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.33 E-value=9.7e-13 Score=103.01 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=58.0
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCC-CcccccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVS-PLLSQAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s-~Ll~~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+||++++ ||||||+++| .++ ++......+|||+|++||++++||..+|++.|
T Consensus 1 tt~vgi~~~-----------------------dgVvlaaD~r--~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 55 (204)
T 1iru_L 1 TTTLAFKFR-----------------------HGVIVAADSR--ATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 55 (204)
T ss_dssp CCEEEEEET-----------------------TEEEEEECCC--EEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHH
T ss_pred CeEEEEEeC-----------------------CEEEEEEcCC--cccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHH
Confidence 478899999 9999999999 665 67777889999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 56 ~~~~~~~~~~ 65 (204)
T 1iru_L 56 ERLLARQCRI 65 (204)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 46
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.29 E-value=2.8e-12 Score=102.44 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=56.9
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc-ccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS-QAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~-~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ ||||||+++| .+++++. .+..+|||+|+|||++++||..+|++.|
T Consensus 1 TT~vgi~~~-----------------------dgVvlaaD~r--~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l 55 (222)
T 1ryp_I 1 TTIVGVKFN-----------------------NGVVIAADTR--STQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 55 (222)
T ss_dssp CCEEEEEET-----------------------TEEEEEECCC--EEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHH
T ss_pred CeEEEEEEC-----------------------CEEEEEEcCC--cccCCeeecCCcccEEEecCCEEEEecccHHHHHHH
Confidence 478999999 9999999999 7776644 3578999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 56 ~~~~~~~~~~ 65 (222)
T 1ryp_I 56 TQLIGSNIEL 65 (222)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 47
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.25 E-value=7.5e-12 Score=101.00 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=57.0
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCcccc-cccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLSQ-AQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~~-~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ ||||||+++| .+++++.. ...+|||.|++||++++||..+|++.|
T Consensus 1 TTivgi~~~-----------------------dgVVlaaD~r--~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l 55 (234)
T 1iru_I 1 TTIAGVVYK-----------------------DGIVLGADTR--ATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMT 55 (234)
T ss_dssp CCEEEEEET-----------------------TEEEEEECCC--EESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHH
T ss_pred CeEEEEEeC-----------------------CEEEEEEcCC--cccCceeccCcccceEEecCCEEEEecCcHHHHHHH
Confidence 478999999 9999999999 77776544 577999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 56 ~~~~~~~~~~ 65 (234)
T 1iru_I 56 TQLISSNLEL 65 (234)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 48
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.24 E-value=7e-12 Score=101.75 Aligned_cols=64 Identities=6% Similarity=0.046 Sum_probs=56.9
Q ss_pred CceEEeeeeeeeeecccccccccceeeccccCcEEEEEEEecccCCCCccc-ccccCceEEecCcEEEEEeccHHHHHHH
Q psy13971 33 STAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNYLVMTKEIISLKVSPLLS-QAQNSKLSMLNDHVVMAFAGKSLCLIAL 111 (153)
Q Consensus 33 ~t~Vgi~~~~~~~~~~~~~~~~~~~~~~~~~~~gvVla~ekk~~~~s~Ll~-~~~~~KIf~I~~~i~~~~aG~~~D~~~L 111 (153)
.|+|||+++ ||||||+++| .+++++. ....+|||.|++||++++||..+|++.|
T Consensus 1 TT~vgi~~k-----------------------dgVVlaaD~r--~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l 55 (234)
T 3unf_H 1 TTIAGLVFR-----------------------DGVILGADTR--ATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMT 55 (234)
T ss_dssp CEEEEEECS-----------------------SEEEEEECCC--EEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHH
T ss_pred CeEEEEEeC-----------------------CEEEEEECCC--cccCCEeccCccccEEEecCCEEEEecccHHHHHHH
Confidence 378889988 9999999999 7777654 3688999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy13971 112 VALWYNEKDK 121 (153)
Q Consensus 112 v~~~r~ea~~ 121 (153)
++++|.+++.
T Consensus 56 ~~~~~~~~~~ 65 (234)
T 3unf_H 56 TRMAASKMEL 65 (234)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 49
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=53.41 E-value=11 Score=28.92 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=29.1
Q ss_pred ceeeCCCCcch-hhHHHHHHHhcCCceEEeee
Q psy13971 10 ITVFSPDGHLL-QVEYAQEAVRKGSTAVSFQV 40 (153)
Q Consensus 10 ~t~FsP~Grl~-QvEYA~eAv~~G~t~Vgi~~ 40 (153)
+-+||+.|+-- -||-|++|-++|-++|+|.+
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 56899999987 89999999999999999999
No 50
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=42.61 E-value=16 Score=27.98 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=28.0
Q ss_pred eeCCCCcchhhHHHHHHHhcCCceEEeeeee
Q psy13971 12 VFSPDGHLLQVEYAQEAVRKGSTAVSFQVEV 42 (153)
Q Consensus 12 ~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~~ 42 (153)
.||+||...--|++.+|.++|-..|++.-..
T Consensus 9 ~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 9 PLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp GGGSSCCSCHHHHHHHHHHTTCSEEEEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 6899999988899999999999999998873
No 51
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=24.53 E-value=17 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=22.0
Q ss_pred CCCcceeeCCCCcchhhHH-------HHHHH-hcCCceEEeeeee
Q psy13971 6 YDRAITVFSPDGHLLQVEY-------AQEAV-RKGSTAVSFQVEV 42 (153)
Q Consensus 6 Yd~~~t~FsP~Grl~QvEY-------A~eAv-~~G~t~Vgi~~~~ 42 (153)
|...+.+|.|+|.++.++- |.+-- .-|..+++.+.++
T Consensus 4 ~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG 48 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDG 48 (78)
T ss_dssp --CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETT
T ss_pred cCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECC
Confidence 4567899999999987543 32211 1245666666653
No 52
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=20.92 E-value=58 Score=24.42 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=27.2
Q ss_pred CCCcceeeCCCCcchhhHHHHHHHhcCCceEEeeee
Q psy13971 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVE 41 (153)
Q Consensus 6 Yd~~~t~FsP~Grl~QvEYA~eAv~~G~t~Vgi~~~ 41 (153)
++.++ .||++|..---|++.+|.++|-..+++.-.
T Consensus 6 lH~Ht-~~Sd~g~~~~~e~v~~A~~~Gl~~iaiTDH 40 (245)
T 1m65_A 6 LHMHT-VASTHAYSTLSDYIAQAKQKGIKLFAITDH 40 (245)
T ss_dssp CCBCC-TTSTTCCCCHHHHHHHHHHHTCCEEEEEEE
T ss_pred eCcCC-CCCCCCCCcHHHHHHHHHHCCCCEEEECCC
Confidence 33433 588777755559999999999999999876
Done!