RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13971
(153 letters)
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 74.6 bits (183), Expect = 1e-17
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 2 SSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKI 61
SS+ +DR IT+FSP+G L QVEYA +A+ +G +++ +
Sbjct: 4 SSAGFDRHITIFSPEGRLYQVEYAFKAINQGGL----------------------TSVAV 41
Query: 62 TLNNYLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAG 103
+ V+ + LL + + L + +++ G
Sbjct: 42 RGKDCAVIVTQ--KKVPDKLLDSSTVTHLFKITENIGCVMTG 81
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 72.8 bits (178), Expect = 5e-17
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 27/100 (27%)
Query: 4 SRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITL 63
+ YD FSP G L QVEYA EA+++GS V + + V
Sbjct: 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAV------------------ 44
Query: 64 NNYLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAG 103
+++LK + + K+ ++H+ ++ AG
Sbjct: 45 ---------LVALKRNADELSSYQKKIIKCDEHMGLSLAG 75
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 72.4 bits (177), Expect = 7e-17
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 3 SSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQ 39
S RYD T+FSP+G L QVEYA EA+ T +
Sbjct: 1 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGIL 37
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 250
Score = 72.4 bits (177), Expect = 8e-17
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 3 SSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVE--VYLVSSFRKT-GLRVQSTI 59
+ RY ++T FSP G L Q++YA AV++G T++ + V + + + + L + T+
Sbjct: 2 TDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETL 61
Query: 60 K 60
Sbjct: 62 S 62
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 244
Score = 71.7 bits (175), Expect = 2e-16
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 3 SSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVE--VYLVSSFRKT-GLRVQST 58
S RYD T+FSP+G L QVEYA E++ TA+ + L + + T L Q T
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDT 60
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 71.2 bits (174), Expect = 2e-16
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 25/100 (25%)
Query: 4 SRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITL 63
+ YD + + FSPDG + QVEYA +AV STA+ I
Sbjct: 5 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIG-----------------------IRC 41
Query: 64 NNYLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAG 103
+ +V E L +S L + N +L ++ HV MA AG
Sbjct: 42 KDGVVFGVE--KLVLSKLYEEGSNKRLFNVDRHVGMAVAG 79
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 70.4 bits (172), Expect = 4e-16
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 25/100 (25%)
Query: 4 SRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITL 63
+ YD + +VFSPDG QVEYA +AV G+T++ I
Sbjct: 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIG-----------------------IKC 38
Query: 64 NNYLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAG 103
N+ +V E L S LL +N K+ +++ H+ ++G
Sbjct: 39 NDGVVFAVE--KLITSKLLVPQKNVKIQVVDRHIGCVYSG 76
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 70.4 bits (172), Expect = 4e-16
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 27/99 (27%)
Query: 5 RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLN 64
+YD +TV+SP G + Q+EYA EAV++GS V + + + V
Sbjct: 2 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAV------------------- 42
Query: 65 NYLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAG 103
+++LK + A K+ +++H+ ++ AG
Sbjct: 43 --------LVALKRAQSELAAHQKKILHVDNHIGISIAG 73
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 69.7 bits (170), Expect = 7e-16
Identities = 43/98 (43%), Positives = 53/98 (54%), Gaps = 25/98 (25%)
Query: 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNN 65
YDRAITVFSPDGHL QVEYAQEAV+KGSTAV + +
Sbjct: 2 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVG-----------------------VRGRD 38
Query: 66 YLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAG 103
+V+ E S V+ L + K+ L+D+V MAFAG
Sbjct: 39 IVVLGVEKKS--VAKLQDERTVRKICALDDNVCMAFAG 74
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 68.9 bits (168), Expect = 1e-15
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 25/98 (25%)
Query: 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNN 65
YDR + FSP+G L QVEY EA++ GSTA+ I +
Sbjct: 1 YDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIG-----------------------IQTSE 37
Query: 66 YLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAG 103
+ + E SPL+ + K+ ++ H+ A +G
Sbjct: 38 GVCLAVE--KRITSPLMEPSSIEKIVEIDAHIGCAMSG 73
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 69.0 bits (168), Expect = 2e-15
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 25/97 (25%)
Query: 7 DRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNNY 66
DR ++ FSP+G L QVEY+ EA++ GSTA+ I
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIG-----------------------IATKEG 37
Query: 67 LVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAG 103
+V+ E SPLL K+ ++ H+ A +G
Sbjct: 38 VVLGVE--KRATSPLLESDSIEKIVEIDRHIGCAMSG 72
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 68.6 bits (167), Expect = 2e-15
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 2 SSSRYDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQ 39
+ Y ++T FSP G L+Q+EYA AV G+ +V +
Sbjct: 1 AERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIK 38
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 68.6 bits (167), Expect = 2e-15
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 24/98 (24%)
Query: 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNN 65
YDR IT+FSP+G L QVEYA +A + + + + +
Sbjct: 3 YDRHITIFSPEGRLYQVEYAFKATNQTNINS----------------------LAVRGKD 40
Query: 66 YLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAG 103
V+ + LL S + ++ + M G
Sbjct: 41 CTVVISQ--KKVPDKLLDPTTVSYIFCISRTIGMVVNG 76
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 68.1 bits (166), Expect = 3e-15
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 25/98 (25%)
Query: 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNN 65
YDRAITVFSPDG L QVEYA+EAV++G+TA+ I
Sbjct: 5 YDRAITVFSPDGRLFQVEYAREAVKRGATAIG-----------------------IKCKE 41
Query: 66 YLVMTKEIISLKVSPLLSQAQNSKLSMLNDHVVMAFAG 103
+++ + S LL + K+ +++H+ A +G
Sbjct: 42 GVILIAD--KRVGSKLLEKDTIEKIYKIDEHICAATSG 77
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 67.0 bits (163), Expect = 7e-15
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 26/99 (26%)
Query: 6 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAVSFQVEVYLVSSFRKTGLRVQSTIKITLNN 65
YDRA+++FSPDGH+ QVEYA EAV++G+ AV + N
Sbjct: 2 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVG-----------------------VKGKN 38
Query: 66 YLVMTKEIISLKVSPLL-SQAQNSKLSMLNDHVVMAFAG 103
+V+ E L ++ SK+S ++ HVV++F+G
Sbjct: 39 CVVLGCE--RRSTLKLQDTRITPSKVSKIDSHVVLSFSG 75
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 57.4 bits (138), Expect = 2e-11
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 11 TVFSPDGHLLQVEYAQEAVRKGSTAVSFQVE--VYLVSSFRKTG--LRVQSTIKI 61
TVFSPDG L QVEYA+EAV+KGSTA+ + V L+S + + S KI
Sbjct: 1 TVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 55
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 32.7 bits (74), Expect = 0.009
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 21 QVEYAQEAVRKGSTAVSFQ 39
+ E A++ + +G + V
Sbjct: 8 RSELARKGIARGRSVVVLT 26
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 28.8 bits (63), Expect = 0.24
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 11 TVFSPDGHLLQVEYAQEAVRKGSTAVSF 38
TV S + +Y +A +KG +
Sbjct: 9 TVASTHAYSTLSDYIAQAKQKGIKLFAI 36
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 26.9 bits (58), Expect = 1.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 14 SPDGHLLQVEYAQEAVRKGSTAVSFQV 40
S G LL VE+ EA+++ A +
Sbjct: 56 SRSGGLLDVEHDMEALKRFDGAYWRDL 82
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa
subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 308
Score = 24.6 bits (52), Expect = 6.4
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 6 YDRAITVFSPDGHLLQVEYAQ 26
Y+RAI+ LL YA
Sbjct: 87 YERAISTLLKKNMLLYFAYAD 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.361
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 496,324
Number of extensions: 19468
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 21
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.4 bits)