Query psy13973
Match_columns 230
No_of_seqs 142 out of 623
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 16:21:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xfa_A Actin depolymerization 100.0 1.5E-35 5E-40 241.1 6.6 129 6-154 3-138 (148)
2 1m4j_A A6 gene product, twinfi 100.0 2.3E-35 7.7E-40 238.8 4.3 126 7-153 1-131 (142)
3 3q2b_A Pfadf1, cofilin/actin-d 100.0 1.2E-33 4.1E-38 225.9 7.6 119 8-154 2-123 (124)
4 1f7s_A Actin depolymerizing fa 100.0 2E-33 7E-38 226.3 8.3 127 9-154 4-132 (139)
5 2lj8_A Cofilin/actin depolymer 100.0 2.5E-33 8.4E-38 228.4 8.5 124 7-153 9-133 (144)
6 1ak6_A Destrin; actin depolyme 100.0 1.6E-34 5.4E-39 242.5 1.3 134 1-153 2-154 (174)
7 2vac_A Twinfilin-2; transferas 100.0 1.2E-33 4E-38 226.8 5.0 123 10-153 1-128 (134)
8 2kvk_A Actin severing and dyna 100.0 6.9E-33 2.3E-37 225.5 7.3 124 7-153 1-126 (144)
9 1tvj_A Cofilin; ADF, actin bin 100.0 1.3E-32 4.3E-37 229.1 8.6 123 9-151 1-143 (166)
10 2i2q_A Cofilin; N-terminal ser 100.0 3.5E-32 1.2E-36 218.0 8.3 125 9-154 2-128 (137)
11 2kd5_A ADF H, actin severing a 100.0 5.9E-32 2E-36 219.5 9.5 124 7-153 1-126 (144)
12 1cfy_A Cofilin; actin-binding, 100.0 3.9E-32 1.3E-36 219.1 6.9 126 9-153 2-129 (143)
13 2l72_A Tgadf, actin depolymeri 100.0 2.2E-31 7.6E-36 217.0 6.6 119 6-153 19-137 (139)
14 1cnu_A Actophorin, ADF, cofili 100.0 3.9E-31 1.3E-35 211.6 6.6 123 11-153 1-125 (137)
15 1vkk_A GMF-gamma, GLIA maturat 100.0 5.3E-30 1.8E-34 211.4 8.8 124 9-153 16-143 (154)
16 2d8b_A Twinfilin-1; cell-free 99.9 3E-28 1E-32 203.0 6.9 136 3-156 15-155 (166)
17 1v6f_A MGMF-beta, GLIA maturat 99.9 3.8E-28 1.3E-32 198.9 7.4 121 12-153 13-137 (151)
18 1hqz_1 ABP1P, actin-binding pr 99.9 4.2E-28 1.4E-32 195.4 7.0 122 7-154 1-129 (141)
19 2w0i_A Twinfilin-2; cytoskelet 99.9 2.1E-28 7.2E-33 196.6 4.3 125 13-155 2-129 (135)
20 3daw_B Twinfilin-1, protein A6 99.9 4E-28 1.4E-32 202.6 4.0 130 10-156 17-150 (164)
21 1x67_A Drebrin-like protein; c 99.9 9.5E-27 3.3E-31 189.7 7.6 121 9-153 4-132 (146)
22 1t3y_A Coactosin-like protein; 99.9 6E-22 2E-26 160.8 8.4 114 16-153 6-121 (141)
23 1ncq_A Coat protein VP1; HRV, 21.0 77 0.0026 28.1 3.8 40 72-111 119-162 (289)
24 1aym_1 HRV16, human rhinovirus 20.9 75 0.0026 28.3 3.6 40 72-111 113-154 (285)
No 1
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.5e-35 Score=241.08 Aligned_cols=129 Identities=18% Similarity=0.204 Sum_probs=108.8
Q ss_pred ccccccCCccCHHHHHHHHHhhcCCCeEEEEEEEecCcEEEEe------eeCCCCCCHHHHHHHhhhCCCCCceEEEEee
Q psy13973 6 QWLHASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVE------YIGDRNATYDSFLEDLQKAGSGECRYGLFDF 79 (230)
Q Consensus 6 ~MSm~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIddekeIvVd------~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~ 79 (230)
+|||+|||.+++||+++|++|+.++++|||+|+|+++++|+|+ .+++++.+|++|++.||+ ++|||++||+
T Consensus 3 ~msm~sGi~v~~e~~~af~~~k~~k~~~~ii~~i~~~~~i~v~~~~~~~~~g~~~~~~~~~~~~L~~---~~prY~~y~~ 79 (148)
T 2xfa_A 3 LGSMVSGVNVSDECIYEFNRLKVKHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKN---TECRYIIADM 79 (148)
T ss_dssp ---CCCCCEECHHHHHHHHHHHTSCCCSEEEEEEETTTEEEEEEEECCTTCCCHHHHHHHHHHTCBT---TBCEEEEEEE
T ss_pred cccccCCCeeCHHHHHHHHHHHCCCceEEEEEEECCCCEEEEEecccccccCCCCCCHHHHHHhCCc---CCcEEEEEec
Confidence 5899999999999999999999988899999999545789998 656556789999999997 9999999999
Q ss_pred eeeccccCccccccCcceE-EEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchhh
Q psy13973 80 EYTHQCQGTTELYRCQGTT-EHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVRL 154 (230)
Q Consensus 80 dy~~~~qgs~~~~~~~kLf-I~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~~ 154 (230)
++++++ ++.+++++ |+||||+|+||+||+||||| +++++.+++-| .||++|+ +|++.-
T Consensus 80 ~~~~~~-----g~~~~k~vfI~w~Pd~a~vr~KMlYAssk------~~lk~~l~g~~-----~~i~atd-~el~~~ 138 (148)
T 2xfa_A 80 PIPTPE-----GVLRDRIYFIFWSPGLSKPKEKMLYAASK------ESLVRKINGIF-----KSLEITC-DINEFE 138 (148)
T ss_dssp EECCSS-----CCCEEEEEEEEECCTTSCHHHHHHHHHHH------HHHHTTCTTCS-----EEEEECS-CGGGHH
T ss_pred ccccCC-----CCcccCEEEEEECCCCCChHHHhHhHHHH------HHHHHHhcCCe-----EEEEEEc-ccCCHH
Confidence 997542 33445665 99999999999999999999 57788887776 2899999 999753
No 2
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=2.3e-35 Score=238.81 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=103.5
Q ss_pred cccccCCccCHHHHHHHHHhhcCCCeEEEEEEEecCcEEEEeeeCCCC----CCHHHHHHHh-hhCCCCCceEEEEeeee
Q psy13973 7 WLHASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRN----ATYDSFLEDL-QKAGSGECRYGLFDFEY 81 (230)
Q Consensus 7 MSm~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIddekeIvVd~~g~~d----~dyddfl~~L-p~~~~~ePRYiVYD~dy 81 (230)
|||+|||.+++||+++|+++|.++ +|||+|+|+++ +|+|++.++.. .+|++|++.| |+ ++|||+|||+++
T Consensus 1 Msm~SGi~v~~e~~~~f~~~k~~k-~~~ii~~i~~~-~ivv~~~~~~~~~~~~~~~e~~~~l~~~---~~~rY~~~~~~~ 75 (142)
T 1m4j_A 1 MSHQTGIQASEDVKEIFARARNGK-YRLLKISIENE-QLVVGSCSPPSDSWEQDYDSFVLPLLED---KQPCYVLFRLDS 75 (142)
T ss_dssp ------CCBCHHHHHHHHHHHTTT-CSEEEEEECSS-SEEEEEEECCCSCHHHHHHHHHGGGCCT---TCCEEEEEEEEE
T ss_pred CCCcCCCeECHHHHHHHHHHhcCC-eEEEEEEEcCC-EEEEEeecCCCccccccHHHHHHhhCCC---CCceEEEEEcCc
Confidence 899999999999999999999887 99999999875 89998887655 3478898888 55 899999999999
Q ss_pred eccccCccccccCcceEEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 82 THQCQGTTELYRCQGTTEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 82 ~~~~qgs~~~~~~~kLfI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
++.. +..++||+||||+|++|+||+||||| +++++++|+.| +++||++|+.+|++.
T Consensus 76 ~~~~-------~~k~vfI~w~Pd~a~vr~KMlYAssk------~~lk~~l~g~~---~~~~i~atd~~el~~ 131 (142)
T 1m4j_A 76 QNAQ-------GYEWIFIAWSPDHSHVRQKMLYAATR------ATLKKEFGGGH---IKDEVFGTVKEDVSL 131 (142)
T ss_dssp EETT-------EEEEEEEEECCTTSCHHHHHHHHHHH------HHHHHHHCGGG---EEEEEEESSHHHHSH
T ss_pred CCCC-------CceEEEEEEcCCCCCHHHHHHHHHHH------HHHHHHcCCce---eEEEEEeCChHHCCH
Confidence 7531 12345599999999999999999999 57889999988 688999999999875
No 3
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=100.00 E-value=1.2e-33 Score=225.86 Aligned_cols=119 Identities=19% Similarity=0.294 Sum_probs=103.6
Q ss_pred ccccCCccCHHHHHHHHHhhcCCCeEEEEEEEecCcEEEEeeeCCCCCCHHHHHHHhhhCCCCC---ceEEEEeeeeecc
Q psy13973 8 LHASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGE---CRYGLFDFEYTHQ 84 (230)
Q Consensus 8 Sm~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIddekeIvVd~~g~~d~dyddfl~~Lp~~~~~e---PRYiVYD~dy~~~ 84 (230)
+|+|||++++||+++|++||.++++|||+|+|+++ +|+|++.++ +.+|++|++.||+ ++ |||+|||+..
T Consensus 2 ~m~SGi~vs~e~~~~f~~lk~~k~~~~ii~kI~~~-~ivv~~~~~-~~~~~~f~~~Lp~---~~~~~prY~vy~~~~--- 73 (124)
T 3q2b_A 2 SMISGIRVNDNCVTEFNNMKIRKTCGWIIFVIQNC-EIIIHSKGA-STTLTELVQSIDK---NNEIQCAYVVFDAVS--- 73 (124)
T ss_dssp --CCSCEECHHHHHHHHHHHHHTSSEEEEEEEETT-EEEEEEEEE-CSCHHHHHHHHHH---CTTCSEEEEEEECSS---
T ss_pred CCCCCCccCHHHHHHHHHHhcCCCcEEEEEEEcCC-EEEEeccCC-CCCHHHHHHHccc---cCCCCcEEEEEecCC---
Confidence 47899999999999999999988899999999984 899998764 5799999999998 66 9999999721
Q ss_pred ccCccccccCcceEEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchhh
Q psy13973 85 CQGTTELYRCQGTTEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVRL 154 (230)
Q Consensus 85 ~qgs~~~~~~~kLfI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~~ 154 (230)
.++||+|||++|+||+|||||||| +++++++|+-+ + .+|+.++.+||+.|
T Consensus 74 ----------k~vfI~w~Pd~a~vk~KMlYASsk------~~l~~~l~g~~---~-~~i~a~d~~dlt~~ 123 (124)
T 3q2b_A 74 ----------KIHFFMYARESSNSRDRMTYASSK------QAILKKIEGVN---V-LTSVIESAQDVADL 123 (124)
T ss_dssp ----------CEEEEEEECTTSCHHHHHHHHHHH------HHHHTTSTTSE---E-CCSCBCSHHHHTTC
T ss_pred ----------CEEEEEECCCCCChhHhhhhHHHH------HHHHHHhCCCc---e-EEEEecCHHHcccc
Confidence 355699999999999999999999 57778998887 2 69999999999875
No 4
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=100.00 E-value=2e-33 Score=226.31 Aligned_cols=127 Identities=25% Similarity=0.452 Sum_probs=108.0
Q ss_pred cccCCccCHHHHHHHHHhhcCCCeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccccC
Q psy13973 9 HASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQCQG 87 (230)
Q Consensus 9 m~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~qg 87 (230)
|+|||.+++||+++|++++.++++|||+|+|+++ ++|+|++.++...+|++|.+.||+ ++|||++||+++++.+
T Consensus 4 ~~sGi~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~---~~~rY~~~~~~~~~~~-- 78 (139)
T 1f7s_A 4 AASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPA---DECRYAIYDFDFVTAE-- 78 (139)
T ss_dssp -CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCT---TSCEEEEEEEEEECTT--
T ss_pred CccCcEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCC---CCceEEEEEeeeeccc--
Confidence 4899999999999999999877899999999875 689999988777799999999997 9999999999997532
Q ss_pred ccccccCcceE-EEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchhh
Q psy13973 88 TTELYRCQGTT-EHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVRL 154 (230)
Q Consensus 88 s~~~~~~~kLf-I~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~~ 154 (230)
++.+.+++ |+|||++|++|+||+|||+| +++++.|++.|+ ||++|+.+||+.-
T Consensus 79 ---~~~~~k~vfI~w~P~~a~v~~KmlyAssk------~~l~~~l~g~~v-----~i~a~d~~el~~~ 132 (139)
T 1f7s_A 79 ---NCQKSKIFFIAWCPDIAKVRSKMIYASSK------DRFKRELDGIQV-----ELQATDPTEMDLD 132 (139)
T ss_dssp ---SCEEEEEEEEEECCTTSCHHHHHHHHHHH------HHHHTTCTTCCE-----EEEECCTTC----
T ss_pred ---cCcccCEEEEEECCCCCChhHheehHHhH------HHHHHhcCCeEE-----EEEECChHHCCHH
Confidence 33445665 99999999999999999999 577788988872 8999999999754
No 5
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=100.00 E-value=2.5e-33 Score=228.43 Aligned_cols=124 Identities=30% Similarity=0.434 Sum_probs=105.9
Q ss_pred cccccCCccCHHHHHHHHHhhcCCCeEEEEEEEecCcEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeecccc
Q psy13973 7 WLHASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQCQ 86 (230)
Q Consensus 7 MSm~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIddekeIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~q 86 (230)
|| +|||+|++||+++|++||.+ ++|||+|+|+++++++|+..+..+.+|++|++.||+ ++|||++||+++++++
T Consensus 9 Ma-~SGi~vsde~~~af~~lk~~-k~~~ii~~i~d~~~~vv~~~~~~~~~~de~~~~L~~---~~prY~~y~~~~~~~~- 82 (144)
T 2lj8_A 9 MA-MSGVSVADECVTALNDLRHK-KSRYVIMHIVDQKSIAVKTIGERGANFDQFIEAIDK---NVPCYAAFDFEYTTND- 82 (144)
T ss_dssp CC-CSSCEECHHHHHHHHHHTTT-SSSEEEEEEETTTEEEEEEECSSCCCHHHHHHHCCS---SSCEEEEEEEEECSSS-
T ss_pred cc-cCCceeCHHHHHHHHHHhcC-CceEEEEEEECCcEEEEEecCCCCCCHHHHHHhCcc---cCCcceeeeeeeccCC-
Confidence 55 48999999999999999975 489999999987788888888888999999999998 9999999999997532
Q ss_pred CccccccCcce-EEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 87 GTTELYRCQGT-TEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 87 gs~~~~~~~kL-fI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
+.++++ ||+||||+|+||+||||||||+ ++++.+++.+ +|++|+.+|++.
T Consensus 83 -----~~~~k~vfI~w~Pd~a~vk~KMlYASsk~------~l~~~l~~~~------~i~a~d~~el~~ 133 (144)
T 2lj8_A 83 -----GPRDKLILISWNPDSGAPRTKMLYSSSRD------ALVPLTQGFQ------GIQANDASGLDF 133 (144)
T ss_dssp -----SSEEEEEEEEECCTTSCHHHHHHHHHHHH------HHHHHTTTSE------EEECCGGGTSCH
T ss_pred -----CCcccEEEEEEcCCCCCHHHHHHHHHHHH------HHHHHhCCee------EEEeCChHHCCH
Confidence 223455 5999999999999999999995 6666776543 799999999874
No 6
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M
Probab=99.98 E-value=1.6e-34 Score=242.50 Aligned_cols=134 Identities=21% Similarity=0.303 Sum_probs=112.5
Q ss_pred CCcccccccccCCccCHHHHHHHHHhhcCC---------CeEEEEEEEecC-cEEEEeee--------CC-CCCCHHHHH
Q psy13973 1 MFIPTQWLHASGVTVSDICKTTYEEIKKDK---------KHRYVVFFIRDE-KQIDVEYI--------GD-RNATYDSFL 61 (230)
Q Consensus 1 ~~~~~~MSm~SGI~VSdE~k~aF~kLK~~K---------~~RyIIfKIdde-keIvVd~~--------g~-~d~dyddfl 61 (230)
|.-|+.|+|+|||.|++||+++|++||.++ ++|||||+|+++ ++|+|++. ++ ++.+|++|+
T Consensus 2 ~~~~~~m~m~SGi~vs~e~~~~f~~~k~~ks~~~~~~~~~~~~iifki~~~~~~Iivee~~~~~~~~~g~~~~~~~~ef~ 81 (174)
T 1ak6_A 2 MITPSSGNSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFV 81 (174)
T ss_dssp CCCCCCSTTTTCCCCCSHHHHHHHHTSSSCCSSHHHHGGGCCCEECCCSTTSCSCCCCSSCCCCSSSTTTTCCSSSHHHH
T ss_pred CcCcCcccccCCCccCHHHHHHHHHHHcCCcccccccccceeEEEEEECCCCcEEEEeccccccccccCcccCCCHHHHH
Confidence 667999999999999999999999999884 689999999875 67888763 22 377999999
Q ss_pred HHhhhCCCCCceEEEEeeeeeccccCccccccCcceEEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhh
Q psy13973 62 EDLQKAGSGECRYGLFDFEYTHQCQGTTELYRCQGTTEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQ 141 (230)
Q Consensus 62 ~~Lp~~~~~ePRYiVYD~dy~~~~qgs~~~~~~~kLfI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ 141 (230)
+.||+ ++|||+|||++|++.+ +....++||+||||+|++|+||+||||| +++++.+|+ +..
T Consensus 82 ~~L~~---~~prY~ly~~~~~~~~-----~~~~klvfI~W~Pd~a~vk~KMlYAssk------~~lk~~l~g-----i~~ 142 (174)
T 1ak6_A 82 GMLPE---KDCRYALYDASFETKE-----SRKEELMFFLWAPELAPLKSKMIYASSK------DAIKKKFQG-----IKH 142 (174)
T ss_dssp HTSCS---SCCCCEECCCCCCCSS-----CSCCCCCEEEECCSSSCHHHHHSHHHHH------HHHHHHCTT-----CSC
T ss_pred HhCCC---CCcEEEEEeCcccCCC-----CccccEEEEEECCCCCCHHHhhHHHHHH------HHHHHHhcC-----CeE
Confidence 99997 9999999999987532 2222445699999999999999999999 467778876 367
Q ss_pred hhhccCcccchh
Q psy13973 142 AIMGTNAQDIVR 153 (230)
Q Consensus 142 ei~gt~~~d~~~ 153 (230)
||++|+.+|+..
T Consensus 143 ~i~atd~~El~~ 154 (174)
T 1ak6_A 143 ECQANGPEDLNR 154 (174)
T ss_dssp CEEESSTTTTCH
T ss_pred EEEECChhhcCH
Confidence 999999999865
No 7
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=99.98 E-value=1.2e-33 Score=226.76 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=106.3
Q ss_pred ccCCccCHHHHHHHHHhhcCCCeEEEEEEEecCcEEEEeeeCCCC----CCHHHHHHHh-hhCCCCCceEEEEeeeeecc
Q psy13973 10 ASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRN----ATYDSFLEDL-QKAGSGECRYGLFDFEYTHQ 84 (230)
Q Consensus 10 ~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIddekeIvVd~~g~~d----~dyddfl~~L-p~~~~~ePRYiVYD~dy~~~ 84 (230)
||||.|++||+++|++||.++ +|||+|+|+++ +|+|++.++.. .+|++|++.| |+ ++|||+|||+++++.
T Consensus 1 ~SGi~v~~e~~~~f~~~k~~k-~r~ii~~i~~~-~ivv~~~~~~~~~~~~~~~~~~~~l~~~---~~prY~v~~~~~~~~ 75 (134)
T 2vac_A 1 SMGIHATEELKEFFAKARAGS-VRLIKVVIEDE-QLVLGASQEPVGRWDQDYDRAVLPLLDA---QQPCYLLYRLDSQNA 75 (134)
T ss_dssp CCSCEECHHHHHHHHHHHHSS-CSEEEEEEETT-EEEEEEEECCCSCHHHHHHHHHGGGCCT---TCCEEEEEEEEEEET
T ss_pred CCCcEeCHHHHHHHHHHhcCC-eEEEEEEecCC-EEEEEeecCcCcccccCHHHHHHhcCCC---CCCEEEEEECCcCCC
Confidence 589999999999999999987 99999999875 89999887655 3578899998 45 899999999999753
Q ss_pred ccCccccccCcceEEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 85 CQGTTELYRCQGTTEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 85 ~qgs~~~~~~~kLfI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
. +..++||+||||+|+||+||+||||| +++++++|+.+ +++||++|+.+|++.
T Consensus 76 ~-------~~k~vfI~w~Pd~a~vr~KMlYAssk------~~lk~~l~g~~---~~~~i~atd~~el~~ 128 (134)
T 2vac_A 76 Q-------GFEWLFLAWSPDNSPVRLKMLYAATR------ATVKKEFGGGH---IKDELFGTVKDDLSF 128 (134)
T ss_dssp T-------EEEEEEEEECCTTSCHHHHHHHHHHH------HHHHHHHCGGG---EEEEEEESSHHHHSH
T ss_pred C-------CceEEEEEEcCCCCCHHHHhHHHHHH------HHHHHHcCCCe---eeEEEEeCChHHcCH
Confidence 1 12345599999999999999999999 57889999988 688999999999875
No 8
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=99.97 E-value=6.9e-33 Score=225.53 Aligned_cols=124 Identities=22% Similarity=0.357 Sum_probs=106.4
Q ss_pred cccccCCccCHHHHHHHHHhhcCCCeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccc
Q psy13973 7 WLHASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQC 85 (230)
Q Consensus 7 MSm~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~ 85 (230)
|+ +|||+|++||+++|++||.+ ++|||+|+|+++ ++|+|+..++.+.+|++|++.||+ ++|||++||++|+++
T Consensus 1 Ma-~SGv~v~de~~~af~~lk~~-k~~~vi~~I~~~~~~i~v~~~~~~~~~~~e~~~~L~~---~~prY~~y~~~~~~~- 74 (144)
T 2kvk_A 1 MA-ISGVTLEESVRGAIDDLRMK-KSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFST---EKPCYVAFDFEYNDA- 74 (144)
T ss_dssp CC-CCCCEECHHHHHHHHHHHTT-SSSEEEEEECTTSCEEEEEEEECTTCCHHHHHHTCCT---TSCCEEEEEEEEEET-
T ss_pred CC-cCCcccCHHHHHHHHHHhcC-CceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhCCc---cCceEEEEEeeeccC-
Confidence 56 58999999999999999985 489999999874 689999988888999999999998 899999999999753
Q ss_pred cCccccccCcce-EEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 86 QGTTELYRCQGT-TEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 86 qgs~~~~~~~kL-fI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
++.++++ ||+|||++|++|+||+|||||+ ++++.+++ + .+|++|+.+||+.
T Consensus 75 -----~~~~~k~vfI~w~Pd~a~vk~KMlyassk~------~lk~~l~~-~-----~~i~a~d~~el~~ 126 (144)
T 2kvk_A 75 -----GSKREKLILIQWIPDTARPREKMMYSASRD------ALSSVSEG-Y-----LPIQANDESGLDA 126 (144)
T ss_dssp -----TEEEEEEEEEEECCTTSCHHHHHHHHHHHH------HHHHHCTT-E-----EEEEESSGGGGCH
T ss_pred -----CCCcccEEEEEECCCCCCHHHHHHHHHHHH------HHHHhcCC-E-----EEEEECChHHCCH
Confidence 2234566 5999999999999999999995 66677765 3 3799999999974
No 9
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus}
Probab=99.97 E-value=1.3e-32 Score=229.15 Aligned_cols=123 Identities=27% Similarity=0.409 Sum_probs=105.2
Q ss_pred cccCCccCHHHHHHHHHhhcCC---------CeEEEEEEEecC-cEEEEee--------eCC-CCCCHHHHHHHhhhCCC
Q psy13973 9 HASGVTVSDICKTTYEEIKKDK---------KHRYVVFFIRDE-KQIDVEY--------IGD-RNATYDSFLEDLQKAGS 69 (230)
Q Consensus 9 m~SGI~VSdE~k~aF~kLK~~K---------~~RyIIfKIdde-keIvVd~--------~g~-~d~dyddfl~~Lp~~~~ 69 (230)
|+|||.|++||+++|++||.++ ++|||||+|+++ ++|++++ .++ ++.+|++|++.||+
T Consensus 1 m~SGi~vs~e~~~~f~~~k~~k~~~~~~~~~~~~~iifki~~~~~~iivee~~~~~~~~~~~~~~~~~~ef~~~L~~--- 77 (166)
T 1tvj_A 1 MASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPL--- 77 (166)
T ss_dssp CCCCCEECHHHHHHHHHHHSCCCSCHHHHTTCEEEEEEEECTTSSEEEEEEEEEEETTTBTTTBSCHHHHHHHHCCT---
T ss_pred CCCCCeeCHHHHHHHHHHhcCCCccccccccceeEEEEEECCCCcEEEEeccccccccccCccccCCHHHHHHhCCC---
Confidence 6899999999999999999886 599999999875 6888886 343 27899999999997
Q ss_pred CCceEEEEeeeeeccccCccccccCcce-EEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCc
Q psy13973 70 GECRYGLFDFEYTHQCQGTTELYRCQGT-TEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNA 148 (230)
Q Consensus 70 ~ePRYiVYD~dy~~~~qgs~~~~~~~kL-fI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~ 148 (230)
++|||+|||++|++.+ + .+++| ||+||||+|++|+||+||||| +++++.+|+- ..||++|+.
T Consensus 78 ~~prY~vy~~~~~~~~-----~-~~~klvfI~W~Pd~a~vr~KMlYAssk------~~lk~~l~gi-----~~~i~atd~ 140 (166)
T 1tvj_A 78 NDCRYALYDATYETKE-----S-KKEDLVFIFWAPESAPLKSKMIYASSK------DAIKKKFTGI-----KHEWQVNGL 140 (166)
T ss_dssp TSCEEEEEEEEEEESS-----C-EEEEEEEEEECCTTSCHHHHHHHHHHH------HHHHHTTTTC-----CCEEEESSG
T ss_pred CCcEEEEEeccccCCC-----C-CccCEEEEEECCCCCCHHHhhHHHHhH------HHHHHHhcCC-----eEEEEECCh
Confidence 9999999999998543 1 33455 599999999999999999999 5777888764 459999999
Q ss_pred ccc
Q psy13973 149 QDI 151 (230)
Q Consensus 149 ~d~ 151 (230)
+|+
T Consensus 141 ~el 143 (166)
T 1tvj_A 141 DDI 143 (166)
T ss_dssp GGT
T ss_pred HHc
Confidence 999
No 10
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.5e-32 Score=217.98 Aligned_cols=125 Identities=29% Similarity=0.446 Sum_probs=103.7
Q ss_pred cccCCccCHHHHHHHHHhhcCCCeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccccC
Q psy13973 9 HASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQCQG 87 (230)
Q Consensus 9 m~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~qg 87 (230)
|+|||.+++||+++|++|+.+++++||+|+|+++ ++|+|++ ++++.+|++|.+.||+ ++|||++||++++++++
T Consensus 2 ~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~-~~~~~~~~el~~~L~~---~~~rY~~~~~~~~~~~~- 76 (137)
T 2i2q_A 2 SFSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPE---KDCRYAIYDFEFNLGEG- 76 (137)
T ss_dssp CCSCCEECHHHHHHHHHHHHTCCCSEEEEEECTTSSEEEEEE-EECCCCHHHHHHTSCS---SSCEEEEEEEEECSSSS-
T ss_pred CCCCcccCHHHHHHHHHHHCCCCceEEEEEECCCCcEEEEec-CCCCCCHHHHHHhCCC---cCceEEEEEeeeecCCC-
Confidence 4799999999999999999987899999999873 6898987 5667899999999997 99999999999976431
Q ss_pred ccccccCcce-EEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchhh
Q psy13973 88 TTELYRCQGT-TEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVRL 154 (230)
Q Consensus 88 s~~~~~~~kL-fI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~~ 154 (230)
.++++ ||+|||++|+||+||+||||| +++++.+++-| .+|++|+.+||+.-
T Consensus 77 -----~~~k~vfI~w~Pd~a~vk~KMlyassk------~~l~~~l~g~~-----~~i~a~d~~el~~~ 128 (137)
T 2i2q_A 77 -----VRNKIIFISWSPDVAPIKSKMVYSSSK------DTLRRAFTGIG-----TDIQATDFSEVAYE 128 (137)
T ss_dssp -----CEEEEEEEEECCTTSCHHHHHHHHHHH------HHHHTTCCCCC-----EEEEECCCC-----
T ss_pred -----CccCEEEEEECCCCCChhHhhhhHHHH------HHHHHHhcCce-----EEEEECChHHcCHH
Confidence 33455 599999999999999999999 56777886554 48999999999653
No 11
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=99.97 E-value=5.9e-32 Score=219.49 Aligned_cols=124 Identities=22% Similarity=0.362 Sum_probs=107.9
Q ss_pred cccccCCccCHHHHHHHHHhhcCCCeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccc
Q psy13973 7 WLHASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQC 85 (230)
Q Consensus 7 MSm~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~ 85 (230)
||| |||.+++||+++|++++.++ ++||+|+|+++ ++|+|+.++.++.+|++|++.||+ ++|||++||+++++++
T Consensus 1 Ms~-SGi~vs~e~~~a~~~~~~~~-~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~---~~~rY~~~~~~~~~~~ 75 (144)
T 2kd5_A 1 MAI-SGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFST---EKPCYVAFDFEYNDAG 75 (144)
T ss_dssp CCC-CSCBCCHHHHHHHHHHTTTS-SSEEEEEECSSSCBEEEEEECCSCCCHHHHTTTTSC---SSCEEEEEEEEEESSS
T ss_pred CCc-cCCCcCHHHHHHHHHHHcCC-eeEEEEEECCCCCEEEEEeccCCCCCHHHHHHhCCc---cCcEEEEEEEEecCCC
Confidence 666 99999999999999999887 99999999874 689999888778899999999997 9999999999998542
Q ss_pred cCccccccCcce-EEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 86 QGTTELYRCQGT-TEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 86 qgs~~~~~~~kL-fI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
+.+.++ ||+|||++|++|+||+|||+| +++++.+++ + .+|++|+.+||+.
T Consensus 76 ------~~~~k~vfI~w~Pd~a~vk~KMlyAssk------~~l~~~l~g-----~-~~i~a~d~~el~~ 126 (144)
T 2kd5_A 76 ------SKREKLILIQWIPDTARPREKMMYSASR------DALSSVSEG-----Y-LPIQANDESGLDA 126 (144)
T ss_dssp ------CEEEEEEEEEECCCCSCSHHHHHHHHHG------GGGTTTTCC-----S-EEEEESSSSSSSH
T ss_pred ------CCccCEEEEEECCCCCCHHHHhhhHHHH------HHHHHHhCC-----e-EEEEECChHHCCH
Confidence 223455 599999999999999999999 567777764 4 7999999999975
No 12
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=99.97 E-value=3.9e-32 Score=219.15 Aligned_cols=126 Identities=24% Similarity=0.437 Sum_probs=104.9
Q ss_pred cccCCccCHHHHHHHHHhhcCCCeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccccC
Q psy13973 9 HASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQCQG 87 (230)
Q Consensus 9 m~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~qg 87 (230)
|+|||.+++||+++|++++.+++++||+|+|+++ ++|+|+..++ +.+|++|++.||+ ++|||++||+++++++.
T Consensus 2 ~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~-~~~~~el~~~L~~---~~~rY~~~~~~~~~~~~- 76 (143)
T 1cfy_A 2 SRSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETST-DPSYDAFLEKLPE---NDCLYAIYDFEYEINGN- 76 (143)
T ss_dssp ----CEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEEEC-CCCHHHHHTTSCT---TCCEEEEEEEEEECSSS-
T ss_pred CcCCcEeCHHHHHHHHHHHCCCCeeEEEEEEcCCCCEEEEEecCC-CCCHHHHHHhCCC---CCcEEEEEEeeeecCCC-
Confidence 4799999999999999999987899999999873 6899998875 6799999999997 99999999999975421
Q ss_pred ccccccCcceE-EEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 88 TTELYRCQGTT-EHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 88 s~~~~~~~kLf-I~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
.+.+.+++ |+|||++|++|+||+|||+| +++++.|++-| .+|++|+.+||+.
T Consensus 77 ---~~~~~k~vfI~w~Pd~a~v~~KmlyAssk------~~l~~~l~g~~-----~~i~a~d~~el~~ 129 (143)
T 1cfy_A 77 ---EGKRSKIVFFTWSPDTAPVRSKMVYASSK------DALRRALNGVS-----TDVQGTDFSEVSY 129 (143)
T ss_dssp ---CCEEEEEEEEEECCTTSCHHHHHHHHHHH------HHHHHHCTTCC-----EEEEESSGGGGSH
T ss_pred ---cccccCEEEEEECCCCCChhheeehHhhH------HHHHHhcCCce-----EEEEeCChHHCCH
Confidence 03445665 99999999999999999999 56677787766 3899999999875
No 13
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=99.97 E-value=2.2e-31 Score=217.00 Aligned_cols=119 Identities=23% Similarity=0.347 Sum_probs=101.9
Q ss_pred ccccccCCccCHHHHHHHHHhhcCCCeEEEEEEEecCcEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccc
Q psy13973 6 QWLHASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQC 85 (230)
Q Consensus 6 ~MSm~SGI~VSdE~k~aF~kLK~~K~~RyIIfKIddekeIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~ 85 (230)
.|+|+|||++++||+++|++|+.++++|||+|+|++ ++|+|++.++ + +|++|++.||+ ++|||++|| +
T Consensus 19 ~~~m~sGi~vs~e~~~af~~lk~~k~~~~ii~~I~~-~eivv~~~g~-~-~~~el~~~Lp~---~~prY~~y~-d----- 86 (139)
T 2l72_A 19 GRHMASGMGVDENCVARFNELKIRKTVKWIVFKIEN-TKIVVEKDGK-G-NADEFRGALPA---NDCRFGVYD-C----- 86 (139)
T ss_dssp ---CCTTCEECHHHHHHHHHHTTTTCCCEEEEEEET-TEEEEEEEES-S-HHHHHHHHCCC---CSCCEEEEE-C-----
T ss_pred cccccCCCCcCHHHHHHHHHHhCCCCeeEEEEEEcC-CEEEEeecCC-C-CHHHHHHhCCC---CCcEEEEEc-C-----
Confidence 468999999999999999999988789999999998 7899998876 5 99999999997 999999999 1
Q ss_pred cCccccccCcceEEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 86 QGTTELYRCQGTTEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 86 qgs~~~~~~~kLfI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
| ..++||+|||++|+||+|||||||| +++++++++.++ . .|..++.+||+.
T Consensus 87 -g------~k~vFI~w~Pd~a~vk~KMlYASsk------~~lk~~l~g~~v---~-~iea~~~~DLte 137 (139)
T 2l72_A 87 -G------NKIQFVLWCPDNAPVKPRMTYASSK------DALLKKLDGATA---V-ALEAHEMGDLAP 137 (139)
T ss_dssp -S------SCEEEEEECCTTSCHHHHHHHHHHH------HHHHHHHCSCCS---C-EEEESSTTTTSC
T ss_pred -C------CcEEEEEECCCCCChhHeeehHhhH------HHHHHHhCCceE---E-EEEeCCHHHCcc
Confidence 1 2456699999999999999999999 577788888774 2 388999999875
No 14
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=99.97 E-value=3.9e-31 Score=211.60 Aligned_cols=123 Identities=27% Similarity=0.495 Sum_probs=105.9
Q ss_pred cCCccCHHHHHHHHHhhcCCCeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccccCcc
Q psy13973 11 SGVTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQCQGTT 89 (230)
Q Consensus 11 SGI~VSdE~k~aF~kLK~~K~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~qgs~ 89 (230)
|||.+++||+++|++|+.+++++||+|+|+++ ++|+++..++++.+|++|.+.||+ ++|||++||++++++++
T Consensus 1 SGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~---~~~rY~~~~~~~~~~~~--- 74 (137)
T 1cnu_A 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPE---RDCRYAIFDYEFQVDGG--- 74 (137)
T ss_dssp -CCEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCT---TSCEEEEEEEEEEETTE---
T ss_pred CCCccCHHHHHHHHHHHcCCCccEEEEEEcCCCCEEEEEeccCCCCCHHHHHHhCCC---CCceEEEEEeeeecCCC---
Confidence 79999999999999999887899999999874 689999988778899999999997 99999999999986431
Q ss_pred ccccCcce-EEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 90 ELYRCQGT-TEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 90 ~~~~~~kL-fI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
.++++ ||+|||++|++|+||+|||||+ ++++.+++-| .+|++|+.+||+.
T Consensus 75 ---~~~k~vfI~w~Pd~a~v~~Kmlyassk~------~l~~~l~g~~-----~~i~a~~~~el~~ 125 (137)
T 1cnu_A 75 ---QRNKITFILWAPDSAPIKSKMMYTSTKD------SIKKKLVGIQ-----VEVQATDAAEISE 125 (137)
T ss_dssp ---EEEEEEEEEECCTTSCHHHHHHHHHHHH------HHHHHSTTCC-----EEEEECSTTTTSH
T ss_pred ---CccCEEEEEECCCCCChHHheehHHhHH------HHHHHhcCce-----EEEEECChHHCCH
Confidence 23455 5999999999999999999994 6667776554 4899999999965
No 15
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=99.96 E-value=5.3e-30 Score=211.44 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=104.3
Q ss_pred cccCCccCHHHHHHHHHhhcCC--CeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccc
Q psy13973 9 HASGVTVSDICKTTYEEIKKDK--KHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQC 85 (230)
Q Consensus 9 m~SGI~VSdE~k~aF~kLK~~K--~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~ 85 (230)
|.||+.+++||+++|++||.++ +++||+|+|+++ ++|+|++.++ +.+|++|.+.||+ ++|||++||+++++++
T Consensus 16 ~~~~~~v~~e~~~a~~~lk~~k~~~~~~iifkId~~~~~I~v~~~~~-~~~~~e~~~~Lp~---~~pRY~vy~~~~~~~~ 91 (154)
T 1vkk_A 16 SLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPE---RQPRFVVYSYKYVHDD 91 (154)
T ss_dssp --CCCEECHHHHHHHHHHHTCCCCSCEEEEEEEETTTTEEEEEEEEE-SCCHHHHHHHSCS---SSCEEEEEECCEECTT
T ss_pred cccceeeCHHHHHHHHHHHhcccCCccEEEEEEcCCCCEEEEEEcCC-CCCHHHHHHhCCC---CCcEEEEEEeeeccCC
Confidence 4689999999999999999875 699999999874 6899987653 6789999999998 9999999999998643
Q ss_pred cCccccccCcceE-EEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 86 QGTTELYRCQGTT-EHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 86 qgs~~~~~~~kLf-I~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
++.+++++ |+|||++|++|+||+|||+|+.++ +.+| +..+|+.++.+||+.
T Consensus 92 -----g~~~~klvFI~w~P~~a~vk~KMlYAssk~~l~------~~lg------i~~~iea~d~~El~~ 143 (154)
T 1vkk_A 92 -----GRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLV------QTAE------LTKVFEIRTTDDLTE 143 (154)
T ss_dssp -----SCEECCEEEEEECCTTSCHHHHHHHHHHHHHHH------HHTT------CCCEEEESSGGGCCH
T ss_pred -----CcccccEEEEEECCCCCChhhhhhhHhhHHHHH------HhhC------ceEEEEECChHhCCH
Confidence 33456776 999999999999999999996554 4442 467899999999976
No 16
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=99.95 E-value=3e-28 Score=202.97 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=110.7
Q ss_pred cccccccccCCc--cCHHHHHHHHHhhcCCCeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEee
Q psy13973 3 IPTQWLHASGVT--VSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDF 79 (230)
Q Consensus 3 ~~~~MSm~SGI~--VSdE~k~aF~kLK~~K~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~ 79 (230)
|-+.-.++|||. |++||+++|++|+.+ +++||+|+|+++ ++|+|++.+ +.+|++|.+.||+ ++|||++|||
T Consensus 15 ~~~~~~~~sgv~~~v~~e~~~a~~~lk~~-~~~~vifkId~~~~~I~v~~~~--~~~~~el~~~Lp~---~~pRY~~y~~ 88 (166)
T 2d8b_A 15 VDTKHQTLQGVAFPISRDAFQALEKLSKK-QLNYVQLEIDIKNETIILANTE--NTELRDLPKRIPK---DSARYHFFLY 88 (166)
T ss_dssp CCCCCSCSCCCCCCBCHHHHHHHHHHHTT-CCSCCEEEEETTTTEEEEEECC--CCCSTTHHHHSCS---SCCEEEEEEE
T ss_pred cccCccccCCcccCcCHHHHHHHHHHHcC-CCcEEEEEEeCCCCEEEEEecC--CCCHHHHHHhCCC---CCceEEEEec
Confidence 334444568999 999999999999987 799999999874 689998875 6789999999998 9999999999
Q ss_pred eeeccccCccccccCcceE-EEEcCC-CCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchhhhc
Q psy13973 80 EYTHQCQGTTELYRCQGTT-EHRRPA-VDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVRLRL 156 (230)
Q Consensus 80 dy~~~~qgs~~~~~~~kLf-I~W~PD-~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~~~~ 156 (230)
+++++++ .+++++ |+|||+ +|++|+||+|||+|+.++ ..+...+|-. +..+|+.++.+||+.-.+
T Consensus 89 ~~~~~~~------~~~k~vFI~w~P~~~~~ik~KMlYAssk~~l~--~~l~~~~Gi~----v~~~iea~d~~El~~~~i 155 (166)
T 2d8b_A 89 KHSHEGD------YLESVVFIYSMPGYTCSIRERMLYSSCKSPLL--EIVERQLQMD----VIRKIEIDNGDELTADFL 155 (166)
T ss_dssp EEEETTE------EEEEEEEEEECCCSSSCHHHHHHHHHTTHHHH--HHHTTSSCCC----CSEEEEESSSTTCCHHHH
T ss_pred cccCCCC------ccccEEEEEECCCCCCCHHHeeehhhhHHHHH--HHHhhccCCc----eeEEEEeCChHHCCHHHH
Confidence 9986432 246775 999999 999999999999997666 4444444421 367899999999976543
No 17
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=99.95 E-value=3.8e-28 Score=198.90 Aligned_cols=121 Identities=10% Similarity=0.133 Sum_probs=102.1
Q ss_pred CCccCHHHHHHHHHhhcCC--CeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccccCc
Q psy13973 12 GVTVSDICKTTYEEIKKDK--KHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQCQGT 88 (230)
Q Consensus 12 GI~VSdE~k~aF~kLK~~K--~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~qgs 88 (230)
.+.|++||+++|++||.++ +++||+|+|+++ ++|+|++.++ +.+|++|.+.||+ ++|||++||++|++++
T Consensus 13 ~~~v~~e~~~a~~~lr~~k~~~~~~iifki~~~~~~I~v~~~~~-~~~~~el~~~Lp~---~~prY~~~~~~~~~~~--- 85 (151)
T 1v6f_A 13 VCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELE-GVSPDELKDELPE---RQPRFIVYSYKYQHDD--- 85 (151)
T ss_dssp CCEECHHHHHHHHHHHTCCCSSCEEEEEEECSSSCEEEEEEEEE-SCCHHHHGGGSCS---SSCEEEEEECCEECTT---
T ss_pred EEEECHHHHHHHHHHHhccCCCccEEEEEEcCCCcEEEEEecCC-CCCHHHHHhhCCC---CCceEEEEecccccCC---
Confidence 4889999999999999876 599999999875 6899988664 5689999999998 9999999999998643
Q ss_pred cccccCcceE-EEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 89 TELYRCQGTT-EHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 89 ~~~~~~~kLf-I~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
++.+++++ |+|||++|+||+||+|||+|+.+ ++.+| +..+|+.++.+||+.
T Consensus 86 --~~~~~k~vfI~w~P~~a~vk~KMlYAssk~~l------~~~lg------i~~~iea~d~~El~~ 137 (151)
T 1v6f_A 86 --GRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKL------VQTAE------LTKVFEIRNTEDLTE 137 (151)
T ss_dssp --SCEECCEEEEEECCTTSCHHHHHHHHHHHHHH------HHHTT------CSEEEEESSGGGCCH
T ss_pred --CcccccEEEEEECCCCCChHHheehHHHHHHH------HHHhC------CeEEEEECChHHCCH
Confidence 23346665 99999999999999999999644 45553 467899999999976
No 18
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=99.94 E-value=4.2e-28 Score=195.37 Aligned_cols=122 Identities=10% Similarity=0.110 Sum_probs=100.7
Q ss_pred cccccCCccC---HHHHHHHHHhhcCC--CeEEEEEEEecCcEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeee
Q psy13973 7 WLHASGVTVS---DICKTTYEEIKKDK--KHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEY 81 (230)
Q Consensus 7 MSm~SGI~VS---dE~k~aF~kLK~~K--~~RyIIfKIddekeIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy 81 (230)
|+ |+||.++ +||+++|++++.++ +++||+|+|+++++|+|+.+|+ +|++|++.||+ ++|||++||++.
T Consensus 1 ~~-m~~i~l~~~~~e~~~a~~~~~~~~~~~~~~ii~~i~~~~~i~v~~~g~---~~~el~~~l~~---~~~rY~~~~~~~ 73 (141)
T 1hqz_1 1 MA-LEPIDYTTHSREIDAEYLKIVRGSDPDTTWLIISPNAKKEYEPESTGS---SFHDFLQLFDE---TKVQYGLARVSP 73 (141)
T ss_dssp ---CCCCCCSTTHHHHHHHHHHHHHTCCTTCCEEEEEECTTSCEEEEEEES---CHHHHHTCCCT---TSCEEEEEEECC
T ss_pred Cc-ccccccCCCCHHHHHHHHHHHhCCCCCceEEEEEEcCCCEEEEEeecC---CHHHHHhhCCC---CceEEEEEEEec
Confidence 66 4578885 99999999999875 7999999998756899998875 89999999997 999999999884
Q ss_pred eccccCccccccCcce-EEEEcCCCCCcccceehhhhccccccccccCC-cccCccccchhhhhhccCcccchhh
Q psy13973 82 THQCQGTTELYRCQGT-TEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGR-PVGRRENTSDAQAIMGTNAQDIVRL 154 (230)
Q Consensus 82 ~~~~qgs~~~~~~~kL-fI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~-~~g~~~~~~~~~ei~gt~~~d~~~~ 154 (230)
+ ++.+.++ ||+|||++|++|+||+|||+|+ ++++ .|++-| .||++|+.+||+.-
T Consensus 74 ~--------~~~~~k~vfI~w~Pd~~~vk~Kmlyas~k~------~l~~~~l~g~~-----~~i~a~~~~el~~e 129 (141)
T 1hqz_1 74 P--------GSDVEKIIIIGWCPDSAPLKTRASFAANFA------AVANNLFKGYH-----VQVTARDEDDLDEN 129 (141)
T ss_dssp T--------TCSCCEEEEEEECCTTSCHHHHHHHHHHHH------HHHHHTSCSCS-----EEEEESSGGGGCHH
T ss_pred C--------CCceeeEEEEEECCCCCChhheEEEeccHH------HHHHHhCCceE-----EEEEECChHHCCHH
Confidence 2 1234555 4999999999999999999994 6665 776665 38999999999753
No 19
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=99.94 E-value=2.1e-28 Score=196.63 Aligned_cols=125 Identities=13% Similarity=0.166 Sum_probs=102.9
Q ss_pred CccCHHHHHHHHHhhcCCCeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccccCcccc
Q psy13973 13 VTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQCQGTTEL 91 (230)
Q Consensus 13 I~VSdE~k~aF~kLK~~K~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~qgs~~~ 91 (230)
++|++||+++|++|+.++ ++||+|+|+++ ++|+|++.+ +.+|++|.+.||+ ++|||++||+++++++
T Consensus 2 ~~v~~e~~~a~~~lk~~~-~~~ii~~id~~~~~I~v~~~~--~~~~~el~~~Lp~---~~~rY~~y~~~~~~~~------ 69 (135)
T 2w0i_A 2 MPLQPEAQRALQQLKQKM-VNYIQMKLDLERETIELVHTE--PTDVAQLPSRVPR---DAARYHFFLYKHTHEG------ 69 (135)
T ss_dssp CCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEECC--CCCGGGGGGGSCS---SSCEEEEEEEEEEETT------
T ss_pred cccCHHHHHHHHHHHcCC-CcEEEEEEeCCCCEEEEEecC--CCCHHHHHhhCCC---CCcEEEEEecccccCC------
Confidence 679999999999999876 99999999874 689998765 6789999999998 9999999999997542
Q ss_pred ccCcceE-EEEcCC-CCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchhhh
Q psy13973 92 YRCQGTT-EHRRPA-VDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVRLR 155 (230)
Q Consensus 92 ~~~~kLf-I~W~PD-~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~~~ 155 (230)
+.+++++ |+|||+ +|++|+||+|||+|+.++ ..+...+| -+ +..+|+.++.+|++.-.
T Consensus 70 ~~~~k~vfI~w~P~~~~~vk~kMlYassk~~l~--~~l~~~~G-i~---v~~~iea~d~~el~~~~ 129 (135)
T 2w0i_A 70 DPLESVVFIYSMPGYKCSIKERMLYSSCKSRLL--DSVEQDFH-LE---IAKKIEIGDGAELTAEF 129 (135)
T ss_dssp EEEEEEEEEEECCGGGSCHHHHHHHHHHHHHHH--HHHHHTTC-CC---EEEEEEESCGGGCCHHH
T ss_pred CCCccEEEEEECCCCCCCHHHHhHhHHhHHHHH--HHHhhccC-Cc---eeEEEEcCChhhcCHHH
Confidence 2456776 999999 999999999999996555 33332333 33 56899999999997643
No 20
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=99.94 E-value=4e-28 Score=202.60 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=105.7
Q ss_pred ccCC--ccCHHHHHHHHHhhcCCCeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeecccc
Q psy13973 10 ASGV--TVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQCQ 86 (230)
Q Consensus 10 ~SGI--~VSdE~k~aF~kLK~~K~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~q 86 (230)
++|| +|++||+++|++||.+ +++||+|+|+++ ++|+|++. .+.+|++|.+.||+ ++|||+||||+++++.
T Consensus 17 ~~gv~~~v~~e~~~a~~~lk~~-~~~~iifkId~~~e~I~v~~~--~~~~~~df~~~Lp~---~~pRY~vyd~~~~~~g- 89 (164)
T 3daw_B 17 LQGVAFPISRDAFQALEKLSKK-QLNYVQLEIDIKNETIILANT--ENTELRDLPKRIPK---DSARYHFFLYKHSHEG- 89 (164)
T ss_dssp -CCCCCCBCHHHHHHHHHHHTT-SCSEEEEEEETTTTEEEEEEC--CCCCGGGSGGGSCS---SSCEEEEEEEEEEETT-
T ss_pred cCcceEEECHHHHHHHHHHHcC-CceEEEEEEeCCCCEEEEEeC--CCCCHHHHHHhCCc---cCceEEEEecccccCC-
Confidence 4788 7999999999999987 599999999974 68999876 45899999999998 9999999999997541
Q ss_pred CccccccCcceEEEEcCC-CCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchhhhc
Q psy13973 87 GTTELYRCQGTTEHRRPA-VDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVRLRL 156 (230)
Q Consensus 87 gs~~~~~~~kLfI~W~PD-~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~~~~ 156 (230)
...+.++||+|||+ +|+||+||||||||+.++ ..+.+++|- + +..+|..++.+||+.-.+
T Consensus 90 ----~~~~~~ifi~~~P~~~a~ik~kMlYASsK~~l~--~~l~~~~Gi-~---i~k~iea~d~~Elt~e~l 150 (164)
T 3daw_B 90 ----DYLESVVFIYSMPGYTCSIRERMLYSSCKSPLL--EIVERQLQM-D---VIRKIEIDNGDELTADFL 150 (164)
T ss_dssp ----EEEEEEEEEEECCSTTSCHHHHHHHHHTHHHHH--HHHHHHHCC-C---EEEEEEESSSSSCCHHHH
T ss_pred ----CccccEEEEEEcCCCCCCHHHHHHHHHhHHHHH--HHHhhccCC-c---eeEEEEeCChHHcCHHHH
Confidence 12235667999999 999999999999997766 444333342 2 478999999999976543
No 21
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens}
Probab=99.93 E-value=9.5e-27 Score=189.65 Aligned_cols=121 Identities=13% Similarity=0.153 Sum_probs=102.8
Q ss_pred cccCCccC-----HHHHHHHHHhhcCC-CeEEEEEEEecC-cEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeee
Q psy13973 9 HASGVTVS-----DICKTTYEEIKKDK-KHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEY 81 (230)
Q Consensus 9 m~SGI~VS-----dE~k~aF~kLK~~K-~~RyIIfKIdde-keIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy 81 (230)
.+||+.++ +||+++|++++.++ .+|||+|+|+++ ++|+|+..|+ .+|++|++.||+ ++|||++||+++
T Consensus 4 ~~~~m~~~l~~~~~e~~~a~~~v~~~~~~~~wi~~~i~~~~~~l~v~~~G~--~~~~e~~~~L~~---~~~~Y~~~r~~~ 78 (146)
T 1x67_A 4 GSSGMAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGE--GGLEEMVEELNS---GKVMYAFCRVKD 78 (146)
T ss_dssp SSSSSCCCCCTTHHHHHHHHHHHHCSSSSCSEEEEEESSSSSCEEEEEEES--SCHHHHHHHCCT---TSEEEEEEEEEC
T ss_pred cccceEEEcCCCCHHHHHHHHHHHcCCCCccEEEEEEeCCCcEEEEEeccC--CCHHHHHhhCCC---CceEEEEEEEEc
Confidence 35676666 99999999999886 499999999874 5899998874 589999999997 999999999986
Q ss_pred eccccCccccccCcce-EEEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 82 THQCQGTTELYRCQGT-TEHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 82 ~~~~qgs~~~~~~~kL-fI~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
+ .+.+.++ ||+||||++++|+||+|||+| +++++.|++-|+ ||++|+.+||+.
T Consensus 79 ~--------~~~~~K~vfI~W~pd~a~v~~Km~yas~k------~~lk~~l~g~~~-----ei~at~~~el~~ 132 (146)
T 1x67_A 79 P--------NSGLPKFVLINWTGEGVNDVRKGACASHV------STMASFLKGAHV-----TINARAEEDVEP 132 (146)
T ss_dssp S--------SSCSEEEEEEEEECTTSCHHHHHHHHHHH------HHHHHHTTTEEE-----EECCCSGGGGCH
T ss_pred C--------CCCeeeEEEEEECCCCCChhheeeehhhH------HHHHHhcCCcEE-----EEEeCChHHCCH
Confidence 4 1223455 599999999999999999999 578889998872 899999999975
No 22
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=99.86 E-value=6e-22 Score=160.83 Aligned_cols=114 Identities=11% Similarity=0.152 Sum_probs=96.1
Q ss_pred CHHHHHHHHHhhcCC-CeEEEEEEEecCcEEEEeeeCCCCCCHHHHHHHhhhCCCCCceEEEEeeeeeccccCccccccC
Q psy13973 16 SDICKTTYEEIKKDK-KHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQCQGTTELYRC 94 (230)
Q Consensus 16 SdE~k~aF~kLK~~K-~~RyIIfKIddekeIvVd~~g~~d~dyddfl~~Lp~~~~~ePRYiVYD~dy~~~~qgs~~~~~~ 94 (230)
+++|.++|++++.++ .++||+|+++++ +|+|+..|+ .|+||++.||+ ++|||++||+. .. .+++.+
T Consensus 6 ~~~~~~a~~~v~~~~~~~~wilf~~~~~-~i~v~~~G~---g~~e~~~~L~~---~~~~Ya~~r~~-~~-----~~~~~~ 72 (141)
T 1t3y_A 6 KEACRAAYNLVRDDGSAVIWVTFKYDGS-TIVPGEQGA---EYQHFIQQCTD---DVRLFAFVRFT-TG-----DAMSKR 72 (141)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEEEEETT-EEEEEEEES---SHHHHHHHCCT---TCEEEEEEEEE-EC-----SGGGCE
T ss_pred hHHHHHHHHHHHcCCCCceEEEEEEcCC-EEEEEecCC---CHHHHHhhCCC---CceEEEEEEEE-ec-----CCCCce
Confidence 689999999999876 599999999874 699998886 49999999998 99999999996 32 123445
Q ss_pred cceE-EEEcCCCCCcccceehhhhccccccccccCCcccCccccchhhhhhccCcccchh
Q psy13973 95 QGTT-EHRRPAVDRRNKTMLSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNAQDIVR 153 (230)
Q Consensus 95 ~kLf-I~W~PD~A~VK~KMLYASTK~~~r~rs~~~~~~g~~~~~~~~~ei~gt~~~d~~~ 153 (230)
.|++ |.||||+++++.||+||++++ .+++.|.+-| .||+.|+.+||+.
T Consensus 73 ~K~vfI~W~pd~~~~~~K~~~as~k~------~vk~~l~g~~-----~~i~a~d~~el~~ 121 (141)
T 1t3y_A 73 SKFALITWIGENVSGLQRAKTGTDKT------LVKEVVQNFA-----KEFVISDRKELEE 121 (141)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHH------HHTTTSCCCS-----EEEEECSGGGGSH
T ss_pred eeEEEEEECCCCCCHHHhhhHHHHHH------HHHHHhcccE-----EEEEeCChHHCCH
Confidence 7776 999999999999999999995 5666666655 4899999999975
No 23
>1ncq_A Coat protein VP1; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_1* 1hrv_1* 1hri_1* 1na1_A* 1k5m_A* 1r08_1* 1r09_1* 1rvf_1 1vrh_1* 2hwb_1* 2hwc_1* 2r04_1* 2r06_1* 2r07_1* 2rm2_1* 2rr1_1* 2rs1_1* 2rs3_1* 2rs5_1* 4rhv_1 ...
Probab=21.04 E-value=77 Score=28.12 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=23.6
Q ss_pred ceEEEEeeeeeccc---cCccccccCcceE-EEEcCCCCCcccc
Q psy13973 72 CRYGLFDFEYTHQC---QGTTELYRCQGTT-EHRRPAVDRRNKT 111 (230)
Q Consensus 72 PRYiVYD~dy~~~~---qgs~~~~~~~kLf-I~W~PD~A~VK~K 111 (230)
.=|.-+|++++... +.........-.+ |+|+|.+|++..+
T Consensus 119 FTY~RfDlEvT~V~t~~~~~~~~~~~~~~~qvmyvPpGaP~p~~ 162 (289)
T 1ncq_A 119 FTYVRFDSEYTILATASQPDSANYSSNLVVQAMYVPPGAPNPKE 162 (289)
T ss_dssp EEEEEEEEEEEEEEEEECCSCCSSCCCCEEEEEEECTTSCCCCS
T ss_pred ceEEcccEEEEEEEcCCccCCcccCCceEEEEEEeCCCCCCCcc
Confidence 46999999987321 1000000112234 9999999998653
No 24
>1aym_1 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_1* 1c8m_1* 1ncr_A* 1nd2_A* 1nd3_A* 1qju_1* 1qjx_1* 1qjy_1* 1d3e_1 1fpn_1* 1v9u_1* 3dpr_A* 3tn9_1 1r1a_1* 2hwd_1* 2hwe_1* 2hwf_1*
Probab=20.87 E-value=75 Score=28.26 Aligned_cols=40 Identities=18% Similarity=-0.029 Sum_probs=23.4
Q ss_pred ceEEEEeeeeeccccCccccccCcc-eE-EEEcCCCCCcccc
Q psy13973 72 CRYGLFDFEYTHQCQGTTELYRCQG-TT-EHRRPAVDRRNKT 111 (230)
Q Consensus 72 PRYiVYD~dy~~~~qgs~~~~~~~k-Lf-I~W~PD~A~VK~K 111 (230)
-=|.-||++++.............. .. |+|+|.+|++-.+
T Consensus 113 FTY~RfDlEvT~V~t~~~~~~~~~~~~~qvmyvPPGap~p~~ 154 (285)
T 1aym_1 113 FTYARFDSEITMVPSVAAKDGHIGHIVMQYMYVPPGAPIPTT 154 (285)
T ss_dssp EEEEEEEEEEEEEEEEEESSSCCCCCEEEEEEECTTSCCCSS
T ss_pred eeEEecCEEEEEEEecCcCCCCCCceEEEEEEcCCCCCCCCc
Confidence 3599999998742110000001122 24 9999999998654
Done!