RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13973
(230 letters)
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA;
1.72A {Schizosaccharomyces pombe}
Length = 137
Score = 76.5 bits (188), Expect = 5e-18
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 10 ASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGS 69
SGV VS C ++E+K K RYVVF + D K V + +D+FL DL +
Sbjct: 3 FSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK-- 60
Query: 70 GECRYGLFDFEYTHQCQGTTEL 91
+CRY ++DFE+ ++
Sbjct: 61 -DCRYAIYDFEFNLGEGVRNKI 81
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein
binding; 2.10A {Plasmodium berghei}
Length = 148
Score = 74.8 bits (183), Expect = 3e-17
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 10 ASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGD--RNATYDSFLEDLQKA 67
SGV VSD C + +K ++Y+++ I + ++I V+ + + D+ + ++
Sbjct: 7 VSGVNVSDECIYEFNRLKVKHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMRIKNN 66
Query: 68 -GSGECRYGLFDFEYTH 83
+ ECRY + D
Sbjct: 67 LKNTECRYIIADMPIPT 83
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein;
2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB:
1cof_A 1qpv_A
Length = 143
Score = 73.9 bits (181), Expect = 6e-17
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 10 ASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGS 69
SGV V+D T + ++K KK+++++F + D K V + +YD+FLE L
Sbjct: 3 RSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLP---E 59
Query: 70 GECRYGLFDFEYTHQCQGTT 89
+C Y ++DFEY
Sbjct: 60 NDCLYAIYDFEYEINGNEGK 79
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle;
2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB:
1ahq_A
Length = 137
Score = 73.1 bits (179), Expect = 8e-17
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 11 SGVTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGS 69
SG+ VSD C + E+K +HRYV F + ++ VE++G NATY+ F L
Sbjct: 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLP---E 57
Query: 70 GECRYGLFDFEYTHQCQGTTELY 92
+CRY +FD+E+ ++
Sbjct: 58 RDCRYAIFDYEFQVDGGQRNKIT 80
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin,
solution structure, hormone; NMR {Leishmania donovani}
PDB: 2kvk_A
Length = 144
Score = 73.1 bits (179), Expect = 1e-16
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 10 ASGVTVSDICKTTYEEIKKDKKHRYVVFFIR-DEKQIDVEYIGDRNATYDSFLEDLQKAG 68
SGVT+ + + ++++ KK RYV+ I D K+I+V +G+R+ Y E
Sbjct: 3 ISGVTLEESVRGAIDDLRM-KKSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFS--- 58
Query: 69 SGECRYGLFDFEYTHQCQGTTELY 92
+ + Y FDFEY +L
Sbjct: 59 TEKPCYVAFDFEYNDAGSKREKLI 82
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin
regulator, actin-binding protein; HET: TAR; 1.60A
{Plasmodium falciparum} PDB: 2xf1_A
Length = 124
Score = 72.4 bits (177), Expect = 1e-16
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 9 HASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAG 68
SG+ V+D C T + +K K +++F I +I + G T ++ + K
Sbjct: 3 MISGIRVNDNCVTEFNNMKIRKTCGWIIFVI-QNCEIIIHSKGAST-TLTELVQSIDKNN 60
Query: 69 SGECRYGLFDFEY 81
+C Y +FD
Sbjct: 61 EIQCAYVVFDAVS 73
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant
protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP:
d.109.1.2
Length = 139
Score = 72.3 bits (177), Expect = 2e-16
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 10 ASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAG 68
ASG+ V D CK + E+K + HR++V+ I ++ KQ+ VE +G TY+ F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 69 SGECRYGLFDFEYTH 83
+ ECRY ++DF++
Sbjct: 62 ADECRYAIYDFDFVT 76
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin
binding, protein binding; NMR {Toxoplasma gondii}
Length = 139
Score = 68.6 bits (167), Expect = 4e-15
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 10 ASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGS 69
ASG+ V + C + E+K K +++VF I + +I VE G N D F L
Sbjct: 23 ASGMGVDENCVARFNELKIRKTVKWIVFKI-ENTKIVVEKDGKGN--ADEFRGALPA--- 76
Query: 70 GECRYGLFDFEY 81
+CR+G++D
Sbjct: 77 NDCRFGVYDCGN 88
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN
JCSG, protein structure initiative, PSI, joint center
for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2
PDB: 1wfs_A 3l50_A
Length = 154
Score = 68.6 bits (167), Expect = 7e-15
Identities = 11/83 (13%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 10 ASGVTVSDICKTTYEEIK--KDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKA 67
V K T + + K+ + ++ + ++Q+ V +N + + +L +
Sbjct: 17 LVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPER 76
Query: 68 GSGECRYGLFDFEYTHQCQGTTE 90
+ R+ ++ ++Y H +
Sbjct: 77 ---QPRFVVYSYKYVHDDGRVSY 96
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation,
cofilin-like, cytoskeleton, actin-binding, protein
tyrosine kinase-9; 1.70A {Homo sapiens}
Length = 134
Score = 63.1 bits (153), Expect = 5e-13
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 10 ASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQI---DVEYIGDRNATYDSFLEDLQK 66
+ G+ ++ K + + + R + I DE+ + E +G + YD + L
Sbjct: 1 SMGIHATEELKEFFAKA-RAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLD 59
Query: 67 AGSGECRYGLFDFEYTHQC 85
A + Y L+ + +
Sbjct: 60 A--QQPCYLLYRLDSQNAQ 76
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of
alpha-helices, structural protein; 1.60A {Mus musculus}
SCOP: d.109.1.2
Length = 142
Score = 62.7 bits (152), Expect = 9e-13
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 9 HASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKA- 67
H +G+ S+ K + ++ K+R + I +E Q+ V + +++ +
Sbjct: 3 HQTGIQASEDVKEIFAR-ARNGKYRLLKISIENE-QLVVGSCSPPSDSWEQDYDSFVLPL 60
Query: 68 -GSGECRYGLFDFEYTHQC 85
+ Y LF + +
Sbjct: 61 LEDKQPCYVLFRLDSQNAQ 79
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor,
actin-binding protein; NMR {Gallus gallus}
Length = 166
Score = 59.9 bits (144), Expect = 2e-11
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 10 ASGVTVSDICKTTYEEIK---------KDKKHRYVVFFIRDEK-QIDVEY-----IGDRN 54
ASGVTV+D + ++K K+ + V+F + D+K QI VE +GD
Sbjct: 2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIG 61
Query: 55 ATYDSFLEDLQKAGS-GECRYGLFDFEYTHQCQGTTELYRCQ 95
T + K +CRY L+D Y + +L
Sbjct: 62 DTVEDPYTAFVKLLPLNDCRYALYDATYETKESKKEDLVFIF 103
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR
{Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A
3j0s_M
Length = 174
Score = 59.5 bits (143), Expect = 3e-11
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 10 ASGVTVSDICKTTYEEIK---------KDKKHRYVVFFIR-DEKQIDVEYI-----GDRN 54
ASGV V+D + ++K K+ + V+F + D+K I VE GD
Sbjct: 11 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVG 70
Query: 55 ATYDSFLEDL-QKAGSGECRYGLFDFEYTHQCQGTTELY 92
T + +CRY L+D + + EL
Sbjct: 71 VTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELM 109
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein,
cytoskeleton, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Length = 151
Score = 53.1 bits (127), Expect = 3e-09
Identities = 9/83 (10%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 10 ASGVTVSDICKTTYEEIK--KDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKA 67
V++ + + K+ + ++ I ++++ V + D ++L +
Sbjct: 11 LVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDELPER 70
Query: 68 GSGECRYGLFDFEYTHQCQGTTE 90
+ R+ ++ ++Y H +
Sbjct: 71 ---QPRFIVYSYKYQHDDGRVSY 90
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding
proteins, cytoskeleton, structural protein/contractIle
protein complex; HET: ATP; 2.55A {Mus musculus} PDB:
2hd7_A
Length = 164
Score = 50.3 bits (120), Expect = 4e-08
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 9 HASGVT--VSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQK 66
GV +S E++ K+ YV I D K + N + +
Sbjct: 16 TLQGVAFPISRDAFQALEKLS-KKQLNYVQLEI-DIKNETIILANTENTELRDLPKRIP- 72
Query: 67 AGSGECRYGLFDFEYTHQCQGTTELY 92
RY F ++++H+ +
Sbjct: 73 --KDSARYHFFLYKHSHEGDYLESVV 96
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding,
cofilin-like, phosphoprotein, phosphorylation,
transferase, protein tyros kinase-9; 1.8A {Homo
sapiens}
Length = 135
Score = 46.8 bits (111), Expect = 4e-07
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 15 VSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGECRY 74
+ + +++K K Y+ + E++ +E + + RY
Sbjct: 4 LQPEAQRALQQLK-QKMVNYIQMKLDLERET-IELVHTEPTDVAQLPSRVP---RDAARY 58
Query: 75 GLFDFEYTHQ 84
F +++TH+
Sbjct: 59 HFFLYKHTHE 68
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein,
developmental regulation, cellular remodeling,
cytoskeleton, morphology; NMR {Mus musculus}
Length = 166
Score = 46.2 bits (109), Expect = 1e-06
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 6 QWLHASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQ 65
Q L +S E++ K+ YV I D K + N + +
Sbjct: 20 QTLQGVAFPISRDAFQALEKLS-KKQLNYVQLEI-DIKNETIILANTENTELRDLPKRIP 77
Query: 66 KAGSGECRYGLFDFEYTHQCQGTTELY 92
RY F ++++H+ +
Sbjct: 78 ---KDSARYHFFLYKHSHEGDYLESVV 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.021
Identities = 37/211 (17%), Positives = 60/211 (28%), Gaps = 68/211 (32%)
Query: 32 HRYVVFFIRDEKQIDVE-------YIGDRNAT-------YDSFLEDLQKAGSGECR-YGL 76
H +++ V+ YI R +S L + G G + +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--FRAVGEGNAQLVAI 159
Query: 77 F--DFEYTHQCQGTTELYRCQGTTEHR------RPAVDRRNKTMLSRQCRRFSRCRSTAG 128
F QG T+ Y E R V K + R A
Sbjct: 160 FGG--------QGNTDDY----FEELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLDAE 206
Query: 129 R--PVG-------RRENTSDAQAIMGTNAQDIVRLRL-GATQLSHPEHHEYTIKTPGLAK 178
+ G + + + + + + L G QL+H Y + AK
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIP---ISCPLIGVIQLAH-----YVV----TAK 254
Query: 179 VLDDFVCIVGLVRSQRVKTKRGTETGHSKKL 209
+L G + +G TGHS+ L
Sbjct: 255 LL-------GFTPGELRSYLKGA-TGHSQGL 277
Score = 33.5 bits (76), Expect = 0.066
Identities = 46/253 (18%), Positives = 80/253 (31%), Gaps = 65/253 (25%)
Query: 3 IPTQ-WLHASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQID-VEYIGDRNATYDSF 60
+PT + AS + + E + F D++ E + + +
Sbjct: 22 VPTASFFIAS--QLQEQFNKILPEPTEG--------FAADDEPTTPAELV----GKFLGY 67
Query: 61 LEDL---QKAGS-GEC-RYGLFDFEYTHQCQGTTELYRCQGTTEHRRPA-VDRRNKTMLS 114
+ L K G + L +FE + L +G H A + + N T L
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCY-------L---EGNDIHALAAKLLQENDTTLV 117
Query: 115 RQ---CRRFSRCRSTAGRPVGRREN--------TSDAQ--AIMGTNAQDIVRLRLGATQL 161
+ + + R A RP ++ N +AQ AI G Q G T
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQ-------GNTDD 168
Query: 162 SHPEHHE-YTIKTPGLAKVLDDFVCIVGLVRSQRVKTKRGTETGHSKKLA-----RDSDC 215
E + Y ++ D + S+ ++T E ++ L +
Sbjct: 169 YFEELRDLYQTYHV----LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 216 VKLVKYLL-VPSS 227
YLL +P S
Sbjct: 225 TPDKDYLLSIPIS 237
Score = 33.1 bits (75), Expect = 0.074
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 36/92 (39%)
Query: 22 TYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDR---NAT-----------YDSFLEDLQK- 66
+E I K +F +E + ++ +AT + EDL+
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK-AAFEDLKSK 1750
Query: 67 ---------AG-S-GECRY-------GLFDFE 80
AG S GE Y + E
Sbjct: 1751 GLIPADATFAGHSLGE--YAALASLADVMSIE 1780
Score = 28.9 bits (64), Expect = 2.0
Identities = 36/206 (17%), Positives = 59/206 (28%), Gaps = 71/206 (34%)
Query: 56 TYDSFLEDLQKAGSGECRYGLFDFEYTHQCQGTTELYRCQGTTEHR--RP-----AVDRR 108
+++SF ++KA LF F G RC + P +++
Sbjct: 288 SWESFFVSVRKA----ITV-LF-F------IG----VRCYEAYPNTSLPPSILEDSLENN 331
Query: 109 NKT---MLS-RQCRR---FSRCRSTAGR-PVGRR-----ENTSDAQAIMGTNAQDIVRLR 155
MLS + T P G++ N + + G Q + L
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-PPQSLYGLN 390
Query: 156 LGATQLSHPEHHEYTIKTPGLAKVLDDFVCIVGLVRSQRVKTKRGTE----TG--HSKKL 209
L + P + + + P F S+R K K HS L
Sbjct: 391 LTLRKAKAPSGLDQS-RIP--------F--------SER-KLKFSNRFLPVASPFHSHLL 432
Query: 210 ARDSDCVKL----------VKYLLVP 225
SD + K + +P
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIP 458
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken
structural genomics/proteomics initiative, RSGI RNA
binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB:
2rs7_A
Length = 113
Score = 30.4 bits (68), Expect = 0.17
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 164 PEHHEYTIKTPGLAKVLDDFVCIVGLVRSQRVKTKRGTETGHSKKLARDSDCVKLVKYLL 223
++YT P + F+ + + Q + E G +KKLA S + LV+ L
Sbjct: 42 QGEYKYTQVGPDHNRS---FIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLY 98
>1lwb_A Putative secreted protein; phospholipase A2, atomic resolution,
internal motion, hydrolase; 1.05A {Streptomyces
violaceoruber} SCOP: a.133.1.3 PDB: 1it4_A 1it5_A 1kp4_A
1faz_A
Length = 122
Score = 28.9 bits (64), Expect = 0.58
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 92 YRCQGTTEHRRPAVDRRNKTMLSRQCRRFSR-----CRSTA 127
Y+ G+ + + +D + R C ++ C STA
Sbjct: 71 YKAAGSFDANKSRIDSAFYEDMKRVCTGYTGEKNTACNSTA 111
>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase,
bimetal binding site, enzyme FUNC initiative, EFI; HET:
SO4; 1.60A {Mycobacterium avium subsp}
Length = 423
Score = 28.4 bits (63), Expect = 2.3
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 139 DAQAIMGTNAQDIVRLRLGATQLSHP----EHHEYTIKTPGLAK 178
D + IM NA D++ +++G+ + HH + P K
Sbjct: 380 DIRKIMRDNALDLLGVQVGSAAAENLYFQSHHHHHHWSHPQFEK 423
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 3.2
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 113 LSRQCRRFSRCRSTAGRPVGRRENTSDAQAIMGTNA----QDIVRLRLGATQLSHPEHHE 168
+ + R+ S + V E + + + G +A + QL PE
Sbjct: 740 FTAKLRKELVETSEVRKAVSI-ETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKP 798
Query: 169 YTIKTPGLAKV------LDDFVCIVG 188
Y L+ + + G
Sbjct: 799 YKQVKQIAPAELEGLLDLERVIVVTG 824
>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA
recognition motif, protein-protein complex, hydrolase;
HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
Length = 120
Score = 26.6 bits (59), Expect = 3.6
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 31 KHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFEYTHQ 84
K+RY+ F I + + + + + S LE L + G+ + L F+ +
Sbjct: 15 KNRYIAFEIISDGDFTKDEV--KELIWKSSLEVLGETGTAIVKPWLIKFDPNTK 66
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.50.1.1
Length = 97
Score = 26.3 bits (58), Expect = 3.6
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 194 RVKTKRGTETGHSKKLARDSDCVKLVKYLLVPSSSS 229
V +G SKK A+ VK+++ + P+
Sbjct: 53 DVDGTTYEASGPSKKTAKLHVAVKVLQAMGYPTGFD 88
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 27.1 bits (59), Expect = 4.8
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 140 AQAIMGTNAQDIVRLRLGATQLSHPEHHEYTIKTPGLAKVLDDFVCIVGL 189
Q + G + + + + + +P E + L LD F+ I +
Sbjct: 58 LQIVYGIRLEHFYMMPV-NSGVMYPHLMEGFLPFSNLVTHLDSFLPICRV 106
>2yij_A Phospholipase A1-iigamma; hydrolase; 2.00A {Arabidopsis thaliana}
Length = 419
Score = 27.0 bits (59), Expect = 6.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 55 ATYDSFLEDLQKAGSGECRYGLFDF 79
A YD+F + + +G Y DF
Sbjct: 56 AGYDTFNINTESQFAGASIYSRKDF 80
>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus
furiosus} SCOP: d.58.59.1
Length = 120
Score = 25.9 bits (57), Expect = 6.9
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 31 KHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGECRYGLFDFE 80
K RY+ F + E Q + + I + A +++ L L + G+ + + L F+
Sbjct: 15 KKRYIAFKVISENQFNKDEI--KEAIWNACLRTLGELGTAKAKPWLIKFD 62
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB
family, PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 1.90A {Pyrococcus horikoshii} PDB:
3ih0_A* 3gbu_A*
Length = 313
Score = 26.4 bits (59), Expect = 9.7
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 7 WLHASGV--TVSDICKTTYEEIKKDKKHRYVVF 37
++ V + +T + IKK K + F
Sbjct: 127 IVNFGSVILARNPSRETVMKVIKKIKGSSLIAF 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.404
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,515,516
Number of extensions: 201783
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 37
Length of query: 230
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,188,903
Effective search space: 586446420
Effective search space used: 586446420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)