RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13973
(230 letters)
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]}
Length = 124
Score = 78.8 bits (194), Expect = 2e-19
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 10 ASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAG 68
ASG+ V D CK + E+K + HR++V+ I ++ KQ+ VE +G TY+ F L
Sbjct: 1 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 57
Query: 69 SGECRYGLFDFEYTH 83
+ ECRY ++DF++
Sbjct: 58 ADECRYAIYDFDFVT 72
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Acanthamoeba castellanii, actophorin [TaxId: 5755]}
Length = 134
Score = 76.5 bits (188), Expect = 2e-18
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 12 GVTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKAGSG 70
G+ VSD C + E+K +HRYV F + ++ VE++G NATY+ F L
Sbjct: 1 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLP---ER 57
Query: 71 ECRYGLFDFEYTHQCQGTTEL 91
+CRY +FD+E+ ++
Sbjct: 58 DCRYAIFDYEFQVDGGQRNKI 78
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 133
Score = 73.8 bits (181), Expect = 1e-17
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 VTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGEC 72
V V+D T + ++K KK+++++F + D K V + +YD+FLE L +C
Sbjct: 1 VAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLP---ENDC 57
Query: 73 RYGLFDFEYTHQCQGT 88
Y ++DFEY
Sbjct: 58 LYAIYDFEYEINGNEG 73
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and
(Sus scrofa) [TaxId: 9606]}
Length = 174
Score = 68.9 bits (168), Expect = 3e-15
Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 20/130 (15%)
Query: 9 HASGVTVSDICKTTYEEIK---------KDKKHRYVVFFI-RDEKQIDVEY-----IGDR 53
ASGV V+D + ++K K+ + V+F + D+K I VE +GD
Sbjct: 10 SASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 69
Query: 54 NATYDSFLEDLQKA-GSGECRYGLFDFEYTHQCQGTTELYRCQGTTEHRRPAVDRRNKTM 112
T + +CRY L+D + + EL E ++K +
Sbjct: 70 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPL----KSKMI 125
Query: 113 LSRQCRRFSR 122
+ +
Sbjct: 126 YASSKDAIKK 135
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Human (Homo sapiens), non-muscle isoform [TaxId: 9606]}
Length = 166
Score = 59.7 bits (144), Expect = 5e-12
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 10 ASGVTVSDICKTTYEEIK---------KDKKHRYVVFFI-RDEKQIDVEY-----IGDRN 54
ASGV VSD + ++K K+ + V+F + D+K I +E +GD
Sbjct: 2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVG 61
Query: 55 ATYDSFLEDLQKA-GSGECRYGLFDFEYTHQCQGTTELYRCQ 95
T D K +CRY L+D Y + +L
Sbjct: 62 QTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIF 103
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 137
Score = 58.3 bits (141), Expect = 1e-11
Identities = 11/79 (13%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 14 TVSDICKTTYEEIK--KDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGE 71
V K T + + K+ + ++ + ++Q+ V +N + + +L + +
Sbjct: 4 EVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPE---RQ 60
Query: 72 CRYGLFDFEYTHQCQGTTE 90
R+ ++ ++Y H +
Sbjct: 61 PRFVVYSYKYVHDDGRVSY 79
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding
protein abp1p {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 139
Score = 53.7 bits (129), Expect = 5e-10
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 14 TVSDICKTTYEEIKKDKK--HRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGE 71
T S Y +I + +++ +K+ + E G ++ FL+ +
Sbjct: 8 THSREIDAEYLKIVRGSDPDTTWLIISPNAKKEYEPESTGS---SFHDFLQLFD---ETK 61
Query: 72 CRYGLFDFEYTH 83
+YGL
Sbjct: 62 VQYGLARVSPPG 73
Score = 26.3 bits (58), Expect = 2.2
Identities = 9/53 (16%), Positives = 15/53 (28%)
Query: 1 MFIPTQWLHASGVTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDR 53
+ I A T + K +V RDE +D + +
Sbjct: 80 IIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTARDEDDLDENELLMK 132
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 47.5 bits (113), Expect = 8e-08
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 16 SDICKTTYEEIKKDK-KHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKAGSGECRY 74
+ C+ Y ++ D +V F D I G++ A Y F++ +
Sbjct: 6 KEACRAAYNLVRDDGSAVIWVTFKY-DGSTIVP---GEQGAEYQHFIQQCT---DDVRLF 58
Query: 75 GLFDFEYTH 83
F
Sbjct: 59 AFVRFTTGD 67
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 133
Score = 43.8 bits (103), Expect = 2e-06
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 13 VTVSDICKTTYEEIKKDKKHRYVVFFIRDE-KQIDVEYIGDRNATYDSFLEDLQKA--GS 69
+ S+ K + + + +Y + I E +Q+ V + +++ +
Sbjct: 1 IQASEDVKEIF---ARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLED 57
Query: 70 GECRYGLFDFEYTH 83
+ Y LF + +
Sbjct: 58 KQPCYVLFRLDSQN 71
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein,
LtrC {Listeria monocytogenes [TaxId: 1639]}
Length = 159
Score = 28.5 bits (64), Expect = 0.43
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 6 QWLHASGVTVSDICKTTYE 24
WL GV + DI +
Sbjct: 11 SWLIERGVEIDDIAELVLF 29
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 27.7 bits (61), Expect = 0.63
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 162 SHPEHHEYTIKTPGLAKVLDDFVCIVGLVRSQRVKTKRGTETGHSKKLARDSDCVKLVKY 221
EY G F+ + + Q + E G +KKLA S + LV+
Sbjct: 38 KEKIQGEYKYTQVGPDHN-RSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQ 96
Query: 222 L----LVPSSSS 229
L ++ + SS
Sbjct: 97 LYHLGVIEAYSS 108
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 164
Score = 27.8 bits (62), Expect = 0.84
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 6 QWLHASGVTVSDICKTTYE 24
+WL GVTV I + Y
Sbjct: 18 RWLEERGVTVEKIAELVYY 36
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
Length = 524
Score = 28.4 bits (62), Expect = 0.88
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 13 VTVSDICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLEDLQKA 67
+ S K + E I+ K + +++D+ ID + + + + + +L +A
Sbjct: 439 LATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQA 493
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus
subtilis [TaxId: 1423]}
Length = 161
Score = 27.0 bits (60), Expect = 1.2
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 6 QWLHASGVTVSDICKTTYE 24
L+ GV + DI + +
Sbjct: 12 DMLNKRGVMIEDIARIVQK 30
>d2ox7a1 b.172.1.1 (A:3-145) Hypothetical protein EF1440
{Enterococcus faecalis [TaxId: 1351]}
Length = 143
Score = 25.9 bits (56), Expect = 2.9
Identities = 4/47 (8%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 17 DICKTTYEEIKKDKKHRYVVFFIRDEKQIDVEYIGDRNATYDSFLED 63
DI + ++ + + + + + E++ + D
Sbjct: 83 DILVYDAPKKYAHRRSMHEIAY--ADGRFFWEFLDLVFCQSNILYRD 127
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 24.1 bits (52), Expect = 7.8
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 194 RVKTKRGTETGHSKKLARDSDCVKLVKYLLVPSSSS 229
V +G SKK A+ VK+++ + P+
Sbjct: 46 DVDGTTYEASGPSKKTAKLHVAVKVLQAMGYPTGFD 81
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 25.0 bits (54), Expect = 9.8
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 40 RDEKQIDVEYIGDRNATYDSFLED---LQKAGSGECRYGLFD 78
R +++D+ + Y LQ GS +G
Sbjct: 177 RPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLS 218
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.404
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 854,671
Number of extensions: 38547
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 24
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)