BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13975
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43237|DC1L2_HUMAN Cytoplasmic dynein 1 light intermediate chain 2 OS=Homo sapiens
GN=DYNC1LI2 PE=1 SV=1
Length = 492
Score = 330 bits (845), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/416 (43%), Positives = 245/416 (58%), Gaps = 60/416 (14%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
NIL+ ++ SGKTTL+ KLQG + +KG LEY Y++V DE R+DHTR VWILDG+ H
Sbjct: 56 NILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYH 115
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGA-------- 132
LL+FA++ E+LP T+V+ V M+ PW +++ L WASVL++HID + I
Sbjct: 116 KGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELER 175
Query: 133 ------HDY-QAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVV 185
DY + C+ R L+ +V++ G+ +L NLG+ ++V
Sbjct: 176 KFVKDFQDYMEPEEGCQGSPQRR------GPLTSGSDEENVALPLGDNVLTHNLGIPVLV 229
Query: 186 VVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAH 245
V TK D +S LEK+ Y++EH DF+Q ++R+FCL++GA L YTS KE+KN DLLYKY+ H
Sbjct: 230 VCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVH 289
Query: 246 RLYGFPFRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPIVRKPI 305
+ YGF F T AL+VEKDAV IP+GWDN KKI IL+EN ++KP+D Y D I KP VRK +
Sbjct: 290 KTYGFHFTTPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRK-L 348
Query: 306 SREQDTLVEDEQSFLARQLALLQQNPAANPTTRQDNSLPQIRTPVGVQKTGDRRLSNSPA 365
+++ EDEQ FL +Q +LL + PA TP ++ R S SP
Sbjct: 349 VHDKELAAEDEQVFLMKQQSLLAKQPA---------------TPTRASESPARGPSGSPR 393
Query: 366 MQGGGANSPKKMIDPTKVGATTPG---------------GEGVLASFFNSLLLKKT 406
QG G P V +++PG EGVLASFFNSLL KKT
Sbjct: 394 TQGRGG--------PASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKT 441
>sp|Q5RE09|DC1L2_PONAB Cytoplasmic dynein 1 light intermediate chain 2 OS=Pongo abelii
GN=DYNC1LI2 PE=2 SV=1
Length = 492
Score = 329 bits (844), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 181/408 (44%), Positives = 243/408 (59%), Gaps = 44/408 (10%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
NIL+ ++ SGKTTL+ KLQG + +KG LEY Y++V DE R+DHTR VWILDG+ H
Sbjct: 56 NILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYH 115
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGA-------- 132
LL+FA++ E+LP T+V+ V M+ PW +++ L WASVL++HID + I
Sbjct: 116 KGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELER 175
Query: 133 ------HDY-QAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVV 185
DY + C+ R L+ +V++ G+ +L NLG+ ++V
Sbjct: 176 KFVKDFQDYMEPEEGCQGSPQRR------GPLTSGSDEENVALPLGDNVLTHNLGIPVLV 229
Query: 186 VVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAH 245
V TK D +S LEK+ Y++EH DF+Q ++R+FCL++GA L YTS KE+KN DLLYKY+ H
Sbjct: 230 VCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVH 289
Query: 246 RLYGFPFRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPIVRKPI 305
+ YGF F T AL+VEKDAV IP+GWDN KKI IL+EN ++KP+D Y D I KP VRK +
Sbjct: 290 KTYGFHFTTPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRK-L 348
Query: 306 SREQDTLVEDEQSFLARQLALLQQNPAANPTTRQDNSLPQIRTPVGVQKTGDRRLSNSPA 365
+++ EDEQ FL +Q +LL + PA TP ++ R S SP
Sbjct: 349 VHDKELAAEDEQVFLMKQQSLLAKQPA---------------TPTRASESPARGPSGSPR 393
Query: 366 MQG-GGANSPKKMIDPTKVGATTP------GGEGVLASFFNSLLLKKT 406
QG GG S T V P EGVLASFFNSLL KKT
Sbjct: 394 TQGRGGPASVPSSFPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKT 441
>sp|Q6PDL0|DC1L2_MOUSE Cytoplasmic dynein 1 light intermediate chain 2 OS=Mus musculus
GN=Dync1li2 PE=1 SV=2
Length = 492
Score = 328 bits (841), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 182/410 (44%), Positives = 244/410 (59%), Gaps = 33/410 (8%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
NIL+ ++ SGKTTL+ KLQG + +KG LEY Y++V DE R+DHTR VWILDG+ H
Sbjct: 56 NILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYH 115
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
LL+FA++ E+L T+V+ V M+ PW I++ L WASVL++HID + I + +
Sbjct: 116 KGLLKFAVSAESLRETLVIFVADMSRPWTIMESLQKWASVLREHIDKMKIPPEEMRDLER 175
Query: 141 CKLLTF---------ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTD 191
+ F + L+ SV++ G+ +L NLG+ ++VV TK D
Sbjct: 176 KFMKEFQDYIEPEEGCQGSPQRRGPLTSGSDEDSVALPLGDNVLTHNLGIPVLVVCTKCD 235
Query: 192 YMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251
MS LEK+ Y++EH DF+Q ++R+FCL++GA L YTS KE+KN DLLYKY+ H+ YGF
Sbjct: 236 AMSVLEKEHDYRDEHLDFIQAHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFH 295
Query: 252 FRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPIVRKPISREQDT 311
F AL+VEKDAV IP+GWDN KKI IL+EN ++KP+D Y D I KP VRK + +++
Sbjct: 296 FTIPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRK-LVHDKEL 354
Query: 312 LVEDEQSFLARQLALLQQNPAANPTTRQDNSLPQIRTPVGVQKTGDRRLSNSPAMQGGGA 371
EDEQ FL +Q +LL + PA TP ++ R S SP QG G
Sbjct: 355 AAEDEQVFLMKQQSLLAKQPA---------------TPTRTSESPARGPSGSPRTQGRGG 399
Query: 372 NSPKKMIDP-TKVGATTP------GGEGVLASFFNSLLLKKTAQSPLSKS 414
+ P T V P EGVLASFFNSLL KKT SP S S
Sbjct: 400 PASVPSASPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTG-SPGSPS 448
>sp|Q4R5P6|DC1L2_MACFA Cytoplasmic dynein 1 light intermediate chain 2 OS=Macaca
fascicularis GN=DYNC1LI2 PE=2 SV=1
Length = 492
Score = 328 bits (841), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 179/416 (43%), Positives = 245/416 (58%), Gaps = 60/416 (14%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
+IL+ ++ SGKTTL+ KLQG + +KG LEY Y++V DE R+DHTR VWILDG+ H
Sbjct: 56 SILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYH 115
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGA-------- 132
LL+FA++ E+LP T+V+ V M+ PW +++ L WASVL++HID + I
Sbjct: 116 KGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELER 175
Query: 133 ------HDY-QAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVV 185
DY + C+ R L+ +V++ G+ +L NLG+ ++V
Sbjct: 176 KFVKDFQDYMEPEEGCQGSPQRR------GPLTSGSDEENVALPLGDNVLTHNLGIPVLV 229
Query: 186 VVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAH 245
V TK D +S LEK+ Y++EH DF+Q ++R+FCL++GA L YTS KE+KN DLLYKY+ H
Sbjct: 230 VCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVH 289
Query: 246 RLYGFPFRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPIVRKPI 305
+ YGF F T AL+VEKDAV IP+GWDN KKI IL+EN ++KP+D Y D I KP VRK +
Sbjct: 290 KTYGFHFTTPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRK-L 348
Query: 306 SREQDTLVEDEQSFLARQLALLQQNPAANPTTRQDNSLPQIRTPVGVQKTGDRRLSNSPA 365
+++ EDEQ FL +Q +LL + PA TP ++ R S SP
Sbjct: 349 VHDKELAAEDEQVFLMKQQSLLAKQPA---------------TPTRASESPARGPSGSPR 393
Query: 366 MQGGGANSPKKMIDPTKVGATTPG---------------GEGVLASFFNSLLLKKT 406
QG G P V +++PG EGVLASFFNSLL KKT
Sbjct: 394 TQGRGG--------PASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKT 441
>sp|Q9Y6G9|DC1L1_HUMAN Cytoplasmic dynein 1 light intermediate chain 1 OS=Homo sapiens
GN=DYNC1LI1 PE=1 SV=3
Length = 523
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 181/396 (45%), Positives = 252/396 (63%), Gaps = 18/396 (4%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
N+LL+ ++ +GKT+LI K+QGI+ +KG LEY Y+NV DE R+D TR VWILDG+ H
Sbjct: 69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYH 128
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
LL+F+L+ +L T+VMLVV M+ PW +D L WASV+++H+D L I + +
Sbjct: 129 KGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQ 188
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVS--------VIP-GEGILERNLGVDIVVVVTKTD 191
+ F + + ++ S V+P G L NLG+ ++VV TK D
Sbjct: 189 KLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVLPLGADTLTHNLGIPVLVVCTKCD 248
Query: 192 YMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251
+S LEK+ Y++EHFDF+Q +IRKFCL++GA L YTS KE+KN DL+YKY+ +LYGFP
Sbjct: 249 AISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFP 308
Query: 252 FRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPIVRKPISREQDT 311
++ A++VEKDAV IP+GWDN KKIGIL+EN Q++K +D + D+ITKP VRK E++
Sbjct: 309 YKIPAVVVEKDAVFIPAGWDNDKKIGILHENFQTLKAEDNFEDIITKPPVRK-FVHEKEI 367
Query: 312 LVEDEQSFLARQLALLQQNPAANPTTRQDNSLPQIRTPVGVQKTGDRRLSNSPAMQGGGA 371
+ ED+Q FL + +LL + P D S R P G +T +R +S++ A
Sbjct: 368 MAEDDQVFLMKLQSLLAKQPPTAAGRPVDAS---PRVPGGSPRTPNRSVSSNVASVSPIP 424
Query: 372 NSPKKMIDPT-KVGATTPGGEGVLASFFNSLLLKKT 406
KK IDP K GAT+ EGVLA+FFNSLL KKT
Sbjct: 425 AGSKK-IDPNMKAGATS---EGVLANFFNSLLSKKT 456
>sp|Q8R1Q8|DC1L1_MOUSE Cytoplasmic dynein 1 light intermediate chain 1 OS=Mus musculus
GN=Dync1li1 PE=1 SV=1
Length = 523
Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/407 (44%), Positives = 253/407 (62%), Gaps = 40/407 (9%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
N+LL+ ++ +GKT+LI ++QGI+ +KG LEY Y+NV DE R+D TR VWILDG+ H
Sbjct: 69 NVLLLGEDGAGKTSLIRRIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYH 128
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
LL+F+L+ +L T+VMLVV M+ PW +D L WASV+++H+D L I + +
Sbjct: 129 KGLLKFSLDALSLRDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMK---- 184
Query: 141 CKLLTFARLRAHLIELLSFYL-----FYSSVS--------------VIP-GEGILERNLG 180
+ LI Y+ F +S V+P G L NLG
Sbjct: 185 -------EMEQKLIRDFQEYVEPGEDFPASPQRRTTGAQEDRGDSVVLPLGADTLTHNLG 237
Query: 181 VDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLY 240
+ ++VV TK D +S LEK+ Y++EHFDF+Q +IRKFCL++GA L YTS KE+KN DL+Y
Sbjct: 238 LPVLVVCTKCDAISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVY 297
Query: 241 KYLAHRLYGFPFRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPI 300
KY+ +LYGFP++ A++VEKDAV IP+GWDN KKIGIL+EN Q++K +D + D+ITKP
Sbjct: 298 KYIVQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKIGILHENFQTLKVEDNFEDIITKPP 357
Query: 301 VRKPISREQDTLVEDEQSFLARQLALLQQNPAANPTTRQDNSLPQIRTPVGVQKTGDRRL 360
VRK E++ + ED+Q FL + +LL + P PT R P G +T +R +
Sbjct: 358 VRK-FVHEKEIMAEDDQVFLMKLQSLLAKQP---PTAAGRPVDASPRVPGGSPRTPNRSV 413
Query: 361 SNSPAMQGGGANSPKKMIDPT-KVGATTPGGEGVLASFFNSLLLKKT 406
S++ A KK IDP K GAT+ EGVLA+FFNSLL KKT
Sbjct: 414 SSNVASVSPIPAGSKK-IDPNMKAGATS---EGVLANFFNSLLSKKT 456
>sp|Q9QXU8|DC1L1_RAT Cytoplasmic dynein 1 light intermediate chain 1 OS=Rattus
norvegicus GN=Dync1li1 PE=1 SV=1
Length = 523
Score = 323 bits (828), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 179/396 (45%), Positives = 252/396 (63%), Gaps = 18/396 (4%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
N+LL+ ++ +GKT+LI ++QGI+ +KG LEY Y+NV DE R+D TR VWILDG+ H
Sbjct: 69 NVLLLGEDGAGKTSLIRRIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYH 128
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
LL+F+L+ +L T+VMLVV M+ PW +D L WASV+++H+D L I + +
Sbjct: 129 KGLLKFSLDALSLRDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKEMEQ 188
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVS--------VIP-GEGILERNLGVDIVVVVTKTD 191
+ F + + ++ + V+P G L NLG+ ++VV TK D
Sbjct: 189 KLIRDFQEYVEPGEDFPASPQRRATAAQEDRDDSVVLPLGADTLTHNLGLPVLVVCTKCD 248
Query: 192 YMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251
+S LEK+ Y++EHFDF+Q +IRKFCL++GA L YTS KE+KN DL+YKY+ +LYGFP
Sbjct: 249 AISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFP 308
Query: 252 FRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPIVRKPISREQDT 311
++ A++VEKDAV IP+GWDN KKIGIL+EN Q++K +D + D+ITKP VRK E++
Sbjct: 309 YKIPAVVVEKDAVFIPAGWDNDKKIGILHENFQTLKIEDNFEDIITKPPVRK-FVHEKEI 367
Query: 312 LVEDEQSFLARQLALLQQNPAANPTTRQDNSLPQIRTPVGVQKTGDRRLSNSPAMQGGGA 371
+ ED+Q FL + +LL + P PT R P G +T +R +S++ A
Sbjct: 368 MAEDDQVFLMKLQSLLAKQP---PTAAGRPVDASPRVPGGSPRTPNRSVSSNVASVSPIP 424
Query: 372 NSPKKMIDPT-KVGATTPGGEGVLASFFNSLLLKKT 406
KK IDP K GAT+ EGVLA+FFNSLL KKT
Sbjct: 425 AGSKK-IDPNMKAGATS---EGVLANFFNSLLSKKT 456
>sp|Q90828|DC1L1_CHICK Cytoplasmic dynein 1 light intermediate chain 1 OS=Gallus gallus
GN=DYNC1LI1 PE=1 SV=1
Length = 515
Score = 320 bits (819), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 180/408 (44%), Positives = 250/408 (61%), Gaps = 42/408 (10%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++LL+ ++ +GKT+LI K+QGI+ +KG +EY Y+NV DE R+D TR V ILDG+ H
Sbjct: 59 SVLLLGEDGAGKTSLIGKIQGIEEYKKGRGMEYLYLNVHDEDRDDQTRCNVRILDGDLYH 118
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
LL+FA+ +L T++MLVV M+ PW +D L WASV+++HID L I + +
Sbjct: 119 KGLLKFAMEANSLKDTLIMLVVDMSRPWTAMDSLQKWASVVREHIDKLKIPPEEMK---- 174
Query: 141 CKLLTFARLRAHLIELLSFYL-----FYSSVS--------------VIP-GEGILERNLG 180
+ L+ Y+ F +S ++P G L NLG
Sbjct: 175 -------EMEQKLVRDFQEYVEPGEDFPASPQRRNTSLQEDKDDSVILPLGADTLTCNLG 227
Query: 181 VDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLY 240
+ +VVV TK D +S LEK+ Y++EHFDF+Q +IR+FCL++GA L YTS KE+KN DL+Y
Sbjct: 228 IPVVVVCTKCDAISVLEKEHDYRDEHFDFIQSHIRRFCLQYGAALIYTSVKENKNIDLVY 287
Query: 241 KYLAHRLYGFPFRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPI 300
KY+ +LYGFPF A++VEKDAV IP+GWDN KKIGIL+EN Q++K +D + D I KP
Sbjct: 288 KYIVQKLYGFPFNVPAVVVEKDAVFIPAGWDNDKKIGILHENFQTLKAEDSFEDSIRKPP 347
Query: 301 VRKPISREQDTLVEDEQSFLARQLALLQQNPAANPTTRQDNSLPQIRTPVGVQKTGDRRL 360
VRK + E++ + ED+Q FL +Q + L + P PT R P G +T +R +
Sbjct: 348 VRKFV-HEKEIVAEDDQVFLMKQQSQLAKQP---PTAAGRPVDASPRVPGGSPRTPNRSV 403
Query: 361 -SNSPAMQGGGANSPKKMIDPT-KVGATTPGGEGVLASFFNSLLLKKT 406
SN ++ A S K IDP K GAT+ EGVLA+FFNSLL KKT
Sbjct: 404 TSNVASVTPIPAGS--KKIDPNMKAGATS---EGVLANFFNSLLSKKT 446
>sp|Q62698|DC1L2_RAT Cytoplasmic dynein 1 light intermediate chain 2 OS=Rattus
norvegicus GN=Dync1li2 PE=1 SV=1
Length = 497
Score = 312 bits (799), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 177/410 (43%), Positives = 238/410 (58%), Gaps = 47/410 (11%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
NIL+ ++ SGKTTL+ KLQG + +KG LEY Y++V DE R+DHTR VWILDG+ H
Sbjct: 56 NILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYH 115
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
LL+FA++ E+L T+V+ V M+ PW I++ L WASVL++HID + I + +
Sbjct: 116 KGLLKFAVSAESLRETLVIFVADMSRPWTIMESLQKWASVLREHIDKMKIPPEEMRDLER 175
Query: 141 CKLLTF---------ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTD 191
+ F + L+ +V++ G+ +L NLG+ ++VV TK D
Sbjct: 176 KFMKDFQDYIEPEEGCQGSPQRRGPLTSGSDEDNVALPLGDNVLTHNLGIPVLVVCTKCD 235
Query: 192 YMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251
+S LEK+ Y++EH DF+Q ++R FCL++GA L YTS KE+KN DLLYKY+ H+ YGF
Sbjct: 236 AVSILEKEHDYRDEHLDFIQAHLRGFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFH 295
Query: 252 FRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPIVRKPISREQDT 311
F AL+VEKDAV IP+GWDN KKI IL+EN ++KP+D Y D I KP VRK + +++
Sbjct: 296 FTIPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRK-LVHDKEL 354
Query: 312 LVEDEQSFLARQLALLQQNPAANPTTRQDNSLPQIRTPVGVQKTGDRRLSNSPAMQGGGA 371
EDEQ FL +Q Q++PA P S SP QG G
Sbjct: 355 AAEDEQVFLMKQ----QESPARGP-------------------------SGSPRTQGRGG 385
Query: 372 NSPKKMIDP-TKVGATTP------GGEGVLASFFNSLLLKKTAQSPLSKS 414
+ P T V P EGVLASFFNSLL KKT SP S S
Sbjct: 386 PASVPSASPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTG-SPGSPS 434
>sp|Q54CI8|DC1L1_DICDI Cytoplasmic dynein 1 light intermediate chain 1 OS=Dictyostelium
discoideum GN=dync1li1 PE=3 SV=1
Length = 504
Score = 205 bits (522), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 134/455 (29%), Positives = 229/455 (50%), Gaps = 82/455 (18%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPE--KGLALEYAYINV-SDEYREDHT-RLGVWILDG 76
++ ++ D +SGK+ L++K + + E K +AL Y + ++ D+ ED R+ W L+G
Sbjct: 30 DVAILGDPTSGKSLLLSKFDTVSNVESLKSIALSYTFSDIYEDDTSEDPVGRINYWSLEG 89
Query: 77 EPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHI----------- 125
E + ++LL+F+LN+E + + MV++ + + PWN+++ L W +L++HI
Sbjct: 90 EASQNDLLKFSLNKENIKNCMVIITLDFSQPWNLVESLKKWLGILEEHIKSIFKDDKNGF 149
Query: 126 ----DSLNIGAHDYQAGRCCKLLTFARLRAHLIE--------------------LLSFYL 161
D L+I H+Y+ T ++ IE +
Sbjct: 150 KNLQDKLSIKWHEYEEPTTTAATTTTTTTSNNIENNTNKTSPTTDKIQTNNVQKKKKKKV 209
Query: 162 FYSSV---SVIP--GEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRK 216
SS SV+P E IL NLGV I+V K+D + LEKDF YK+E FD++QQY+R+
Sbjct: 210 NISSAEDASVLPPLSENILINNLGVPILVACCKSDSVVMLEKDFDYKDELFDYIQQYLRR 269
Query: 217 FCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPFRTSALIVEKDAVLIPSGWDNMKKI 276
CL++GAGL YTSA+++ NC + +Y+ + L+GF ++ ++EKD + +P+GWD + KI
Sbjct: 270 ICLQYGAGLIYTSARKEINCGVTLEYIENILFGFELKSKTQLIEKDQIFVPAGWDTLAKI 329
Query: 277 GILYENMQSIK-PDDYYTDVITKP--IVRKPISREQDTLVEDEQSFLAR---QLALLQQN 330
+ +EN + K D+ Y +++ KP I R+ ++ + +D+Q FL + QL Q+
Sbjct: 330 QVDFENQKVCKDTDEPYENIVKKPSIIKRREQTQTNSIICDDDQDFLGKIKSQLDNDDQS 389
Query: 331 PAANPTT----------------RQDNSLPQIRTPVGVQKTGDRRLSNSPAMQGGGANSP 374
+P+T + S P I TP+ + ++ P +N+P
Sbjct: 390 SINSPSTPSPLSQSSNNNNSNNNINNTSTPSINTPL--------QPTDKPLSDIKSSNNP 441
Query: 375 KKMIDPTKVGATTPGGEGVLASFFNSLLLKKTAQS 409
V A+ LA+FF SL+ K S
Sbjct: 442 --------VAASPSAERAALANFFTSLISKDKTSS 468
>sp|Q6AY43|DC2L1_RAT Cytoplasmic dynein 2 light intermediate chain 1 OS=Rattus
norvegicus GN=Dync2li1 PE=1 SV=2
Length = 351
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 113/272 (41%), Gaps = 35/272 (12%)
Query: 14 NDGSVIG--NILLISDNSSGKTTLIAKLQGIDSPEK-GLALEYAYINVSDEYREDHTRLG 70
DG IG ++ I + GKTT+I + D P K LALEY Y + +
Sbjct: 24 GDGMEIGEKSVFFIGSKNGGKTTIILRCLDRDEPAKPTLALEYTYGRKTKGHNTPKDIAH 83
Query: 71 VWILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHID--SL 128
W L G + +L+ + +TL ++LV+ ++ P ++ + N + H+D ++
Sbjct: 84 FWELGGGTSLLDLISIPITVDTLRTFSIVLVLDLSKPNDLWPTMENLLQATKSHVDKVTM 143
Query: 129 NIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVT 188
+G + +A + +R + ++ P +++ + +V++ +
Sbjct: 144 KLGKANSKAS--------SEMRQRMWSVMQ--------KDHPDRELID-PFPIPLVIIGS 186
Query: 189 KTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKY---LAH 245
K D +DF E + + +R +GA L +TS E LL K +
Sbjct: 187 KYDIF----QDF--DPEKRKVICKTLRFVAHYYGASLMFTSKSE----ALLLKMRGVINQ 236
Query: 246 RLYGFPFRTSALIVEKDAVLIPSGWDNMKKIG 277
+G S + + + I +G D++ +IG
Sbjct: 237 LAFGIDKSKSMCVDQNKPLFITAGLDSLCQIG 268
>sp|Q8TCX1|DC2L1_HUMAN Cytoplasmic dynein 2 light intermediate chain 1 OS=Homo sapiens
GN=DYNC2LI1 PE=1 SV=1
Length = 351
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 31/269 (11%)
Query: 15 DGSVIGN--ILLISDNSSGKTTLIAKLQGIDSPEK-GLALEYAYINVSDEYREDHTRLGV 71
DG+ I + I + GKTT+I + D P K LALEY Y + +
Sbjct: 25 DGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTPKDIAHF 84
Query: 72 WILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIG 131
W L G + +L+ + +TL ++LV+ ++ P ++ + N + H+D +
Sbjct: 85 WELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKV--- 141
Query: 132 AHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTD 191
++ + A + + ++ + P +++ V +V++ +K D
Sbjct: 142 -----------IMKLGKTNAKAVSEMRQKIWNNMPKDHPDHELID-PFPVPLVIIGSKYD 189
Query: 192 YMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYK---YLAHRLY 248
E E + + +R +GA L +TS E LL K + +
Sbjct: 190 VFQDFE------SEKRKVICKTLRFVAHYYGASLMFTSKSE----ALLLKIRGVINQLAF 239
Query: 249 GFPFRTSALIVEKDAVLIPSGWDNMKKIG 277
G S + + + I +G D+ +IG
Sbjct: 240 GIDKSKSICVDQNKPLFITAGLDSFGQIG 268
>sp|Q32KV4|DC2L1_BOVIN Cytoplasmic dynein 2 light intermediate chain 1 OS=Bos taurus
GN=DYNC2LI1 PE=2 SV=1
Length = 351
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 35/271 (12%)
Query: 15 DGSVIG--NILLISDNSSGKTTLIAKLQGIDSPEK-GLALEYAYINVSDEYREDHTRLGV 71
DG+ IG ++ I + GKTT+I + D P K LALEY Y + +
Sbjct: 25 DGAEIGEKSVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRTKGHNIPKDIAHF 84
Query: 72 WILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LN 129
W L G + +L+ + +TL ++LV+ ++ P ++ + N + +ID +
Sbjct: 85 WELGGGTSLLDLISIPITSDTLRTFSIVLVLDLSKPNDLWPTMENLLQATKLNIDKVIMK 144
Query: 130 IGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTK 189
+G + +A + ++ ++ P +L+ + +V++ +K
Sbjct: 145 LGKKNSKAASEMRQKMWSNMQKDH----------------PDRELLD-PFPIPLVIIGSK 187
Query: 190 TDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYK---YLAHR 246
D +DF E + + +R +GA L +TS E LL K +
Sbjct: 188 YDIF----QDF--DSEKRKVICKTLRFVAHYYGASLMFTSKSE----ALLLKIRGVINQL 237
Query: 247 LYGFPFRTSALIVEKDAVLIPSGWDNMKKIG 277
+G S + + + I +G D++ +IG
Sbjct: 238 AFGINKSKSICVDQNKPLFITAGLDSLSQIG 268
>sp|Q8K0T2|DC2L1_MOUSE Cytoplasmic dynein 2 light intermediate chain 1 OS=Mus musculus
GN=Dync2li1 PE=1 SV=1
Length = 351
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 112/272 (41%), Gaps = 35/272 (12%)
Query: 14 NDGSVIG--NILLISDNSSGKTTLIAK-LQGIDSPEKGLALEYAYINVSDEYREDHTRLG 70
DG+ IG ++ I + GKTT+I + L +S + LALEY Y + +
Sbjct: 24 GDGAEIGEKSVFFIGSKNGGKTTIILRCLDRDESAKPTLALEYTYGRKTKGHNTPKDIAH 83
Query: 71 VWILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--L 128
W L G + +L+ + +TL ++LV+ ++ P ++ + N + H+D +
Sbjct: 84 FWELGGGTSLLDLISIPITVDTLRTFSIVLVLDLSKPNDLWSTMENLLQATKSHVDKVIM 143
Query: 129 NIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVT 188
+G +A A +R + +S V + L + +V++ +
Sbjct: 144 KLGKTSSKAS--------AEMRQRM---------WSVVQKDHPDRELIDPFPIPLVIIGS 186
Query: 189 KTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYK---YLAH 245
K D +DF E + + +R +GA L +TS E LL K +
Sbjct: 187 KYDIF----QDF--DPEKRKVICKTLRFVAHYYGASLMFTSKSE----ALLLKIRGVINQ 236
Query: 246 RLYGFPFRTSALIVEKDAVLIPSGWDNMKKIG 277
+G S + + + I +G D++ +IG
Sbjct: 237 LAFGIDKSKSICVDQNKPLFITAGLDSLCQIG 268
>sp|Q751N0|DYN3_ASHGO Cytoplasmic dynein intermediate light chain DYN3 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=DYN3 PE=3 SV=1
Length = 371
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 184 VVVVTKTDYMSTLEKD-FYYKEEHFDFVQQYIRKFCLKFGAGLFY---TSAKEDKNCDLL 239
VVVV +++ LE++ + D V Q +R CL G+ L +A+ED
Sbjct: 143 VVVVLNPSHVTQLERNTMVWNSRRLDLVHQTLRAACLNTGSALVTLDPNTARED------ 196
Query: 240 YKYLAHRLYGFPFRTSALIVEKDAVLIPSGWDNMKKIGIL 279
++ L G P ++ ++ IP G D++ KI +
Sbjct: 197 VMHICALLAGLPTSRPVAMLSLQSLFIPHGADSIGKICTI 236
>sp|Q196Y6|VF268_IIV3 Uncharacterized protein 074L OS=Invertebrate iridescent virus 3
GN=IIV3-074L PE=3 SV=1
Length = 834
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 291 YYTDVITKPIVRKPISREQDTLVEDEQSFLARQLALLQQN--PAANPTTRQDNSLPQIRT 348
+ T +KP+VRK + + T + + R+L+L++ N A NPT Q +T
Sbjct: 694 FLTRYASKPLVRKIENLTKTTATSRLEELIERELSLIENNLIEAENPTFIQKYKTTITQT 753
Query: 349 P----VGVQKTGDRRLSNSPAMQGGGANSPKKMIDP--TKVGATT--------PGGEGVL 394
P + VQ G RR+S GGA ++ P + G T P +G++
Sbjct: 754 PSDDYLPVQ--GKRRISRVTPSPPGGATKVRENFHPPGSAAGNTCMECRTPIEPSSDGIM 811
Query: 395 ASFFNSLL 402
+ F N ++
Sbjct: 812 SVFRNKMV 819
>sp|Q2PBM0|LSRA_PHOLU Autoinducer 2 import ATP-binding protein LsrA OS=Photorhabdus
luminescens GN=lsrA PE=3 SV=1
Length = 511
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 1 MTNPYYDVFVLRFNDGSVI-GNI-LLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINV 58
++ + V VL+ D +++ G I L+ N +GK+TL+ + GI+ P+KG+ L+ + +V
Sbjct: 17 ISKQFSGVMVLKHIDFTLLPGQIHALLGGNGAGKSTLMKIIAGIEQPDKGI-LKISGHHV 75
Query: 59 SDEYREDHTRLGVWILDGEP 78
S +LG++++ EP
Sbjct: 76 SHLNPTKAHQLGIYLIPQEP 95
>sp|Q987E7|RBSA2_RHILO Ribose import ATP-binding protein RbsA 2 OS=Rhizobium loti
(strain MAFF303099) GN=rbsA2 PE=3 SV=1
Length = 507
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVW 72
F G V+ L+ +N +GK+T++ L+G+ P+ G + V E R+ H R G+
Sbjct: 29 FRPGEVLA---LVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSH-RAGIR 84
Query: 73 ILDGEP 78
++ EP
Sbjct: 85 VIHQEP 90
>sp|Q04949|DYN3_YEAST Cytoplasmic dynein intermediate light chain DYN3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DYN3 PE=1
SV=2
Length = 312
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 202 YKEEHFDFVQQYIRKFCLKFGAGLFY-----TSAKEDKNCDLLYK-YLAHRLYGFPFRTS 255
++ H DF+ Q +R FC + LFY T K ++ L Y+ L H +
Sbjct: 159 WQSVHIDFILQTLRSFCYFNDSSLFYICEDHTEEKREEAQRLKYQELLKHFCEDRDMKDH 218
Query: 256 ALIVEKDAVLIPSGWDNMKKIGILYENMQ 284
+V++ +LIP G D++ I + E +
Sbjct: 219 IEMVKRSEILIPKGCDSIGLIKTVDERFE 247
>sp|Q2PBM3|LSRA_PHOTE Autoinducer 2 import ATP-binding protein LsrA OS=Photorhabdus
temperata GN=lsrA PE=3 SV=1
Length = 520
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 1 MTNPYYDVFVLRFNDGSVI-GNI-LLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINV 58
++ + V VL+ D +++ G I L+ N +GK+TL+ + GI+ P+KG +++ NV
Sbjct: 17 ISKQFSGVMVLKHIDFTLLPGQIHALLGGNGAGKSTLMKIIAGIEQPDKG-SIKIDGNNV 75
Query: 59 SDEYREDHTRLGVWILDGEP 78
S +LG++++ EP
Sbjct: 76 SHLNPTKAHQLGIYLIPQEP 95
>sp|Q92730|RND1_HUMAN Rho-related GTP-binding protein Rho6 OS=Homo sapiens GN=RND1 PE=1
SV=1
Length = 232
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++L+ D GKT ++ L PE + + E E L +W G P +
Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNI 130
N+ + V+L ++ P + L W + + D+ S +
Sbjct: 75 DNVRPLCYSD----SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV 120
>sp|Q8BLR7|RND1_MOUSE Rho-related GTP-binding protein Rho6 OS=Mus musculus GN=Rnd1 PE=2
SV=1
Length = 232
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 18 VIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGE 77
V ++L+ D GKT ++ L PE + + E E L +W G
Sbjct: 12 VRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGS 71
Query: 78 PAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNI 130
P + N+ + V+L ++ P + L W + + D+ S +
Sbjct: 72 PYYDNVRPLCYSD----SDAVLLCFDISRPETMDSALKKWRTEILDYCPSTRV 120
>sp|Q2HJ68|RND1_BOVIN Rho-related GTP-binding protein Rho6 OS=Bos taurus GN=RND1 PE=2
SV=1
Length = 232
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++L+ D GKT ++ L PE + + E E L +W G P +
Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNI 130
N+ + V+L ++ P + L W + + D+ S +
Sbjct: 75 DNVRPLCYSD----SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV 120
>sp|Q8BWS5|GRIN3_MOUSE G protein-regulated inducer of neurite outgrowth 3 OS=Mus musculus
GN=Gprin3 PE=1 SV=1
Length = 763
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 27/125 (21%)
Query: 286 IKPDDYYTDVITKPIVRKPISREQDTLVEDEQSFLARQLALLQQNPAANPTTRQDNSLPQ 345
KP + + + P++ ++ Q+T E++ A + A +Q NP ++ N++ Q
Sbjct: 402 CKPANQPAEGLKSPLIH--VTSSQNTETEEDLRLSASKEATSRQPEGTNPDFQKANAIGQ 459
Query: 346 IRTPVGVQKTGDRRLSNS----------------------PAMQGGGANS--PKKMIDPT 381
I P G Q ++ L NS P+ GGGAN P + +DPT
Sbjct: 460 ISLPAGSQAEINQGLWNSGPREPEIVVKTAKDHKAESSCKPSNSGGGANKDYPPESLDPT 519
Query: 382 -KVGA 385
K GA
Sbjct: 520 DKKGA 524
>sp|Q8TYV9|Y182_METKA Putative ABC transporter ATP-binding protein MK0182
OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=MK0182 PE=3 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 1 MTNPYYDV------FVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYA 54
MT+ Y D LR +G +++++ N SGKTTL+ + G+ +P KG
Sbjct: 1 MTHEYPDGTCAVCGLSLRVKEGE---SVVVLGPNGSGKTTLLHHILGLLTPTKGHIRVLG 57
Query: 55 YINVSDEYREDHTRLGVWILD 75
+ ++ D RE R+GV D
Sbjct: 58 H-DLPDGVREVRKRIGVVFQD 77
>sp|Q88J90|RBSA_PSEPK Ribose import ATP-binding protein RbsA OS=Pseudomonas putida
(strain KT2440) GN=rbsA PE=3 SV=1
Length = 512
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
LR GSV G L+ +N +GK+TLI L GI P+ G
Sbjct: 26 LRVAAGSVHG---LVGENGAGKSTLIKVLAGIHRPDAG 60
>sp|Q86I31|GACFF_DICDI Rho GTPase-activating protein gacFF OS=Dictyostelium discoideum
GN=gacFF PE=2 SV=1
Length = 885
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 98 VMLVVSMTTPWNIIDELHNWASV-LQDHIDSLNIGAHDY-----QAGRCCKLLTFARLRA 151
V V TP +I D+ HNW SV L + + SL ++ Y Q G C
Sbjct: 392 VRFVTHFITPASIFDKSHNWKSVYLANTVTSLGYCSNYYYLKNQQKGGIC-----TNKEK 446
Query: 152 HLIELLSFYLFYSSVSVIPG-EGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFV 210
++ +S Y S+ EG L + G D++ + K ++ FY+K ++ +F
Sbjct: 447 YMNRAISMYGVTPLTSLSSSKEGWLYKR-GDDLLRIWKKRYFVLRDSSLFYFKHQNDNFP 505
Query: 211 QQYIRKFCLKFGAGLFYTSAKEDKNC 236
I L G L SA KNC
Sbjct: 506 CGVI---LLNHGTKLKRASASTRKNC 528
>sp|P23888|KPST1_ECOLX Polysialic acid transport ATP-binding protein KpsT OS=Escherichia
coli GN=kpsT PE=1 SV=1
Length = 219
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKG 48
NI LI N +GK+TL+ + GID P+ G
Sbjct: 33 NIALIGQNGAGKSTLLRIIGGIDRPDSG 60
>sp|Q8RLB6|SSUB_DELAC Aliphatic sulfonates import ATP-binding protein SsuB OS=Delftia
acidovorans GN=ssuB PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWI-------- 73
+ L+ ++ SGKTTL+ L G+D + A+ NVS +++ +RL W+
Sbjct: 38 VALLGESGSGKTTLLRALAGLDVEARSSGTAVAHGNVSVLFQD--SRLLPWLTVLDNLTL 95
Query: 74 -LDGE---PAHSNLLR 85
LD + PA + LLR
Sbjct: 96 GLDAQAVRPAAAQLLR 111
>sp|Q7RX99|ATG1_NEUCR Serine/threonine-protein kinase atg-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=atg-1 PE=3 SV=1
Length = 932
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 294 DVITKPIVRK------PISREQDTLVEDEQSFLARQLALLQQNP----AANPTTRQDNSL 343
D I KP R+ P+SR +D+LV + L + LA + P ++P R+ + L
Sbjct: 339 DDIPKPPRRRSLKEERPVSRAEDSLVPSRKQSLRKDLADREGAPQTAGPSSPKPRRSSPL 398
Query: 344 PQIRTPVGVQKTG-------DRRLSNSP---AMQGGGANSPKKMIDPTKVGATTP 388
PV + K + RLS SP A G G P+ + P+ T P
Sbjct: 399 ATPNEPVEISKPNYFQIPPREDRLSYSPRKEAADGLGIKRPQ--VQPSTSAPTRP 451
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,115,501
Number of Sequences: 539616
Number of extensions: 7137218
Number of successful extensions: 18241
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 18185
Number of HSP's gapped (non-prelim): 52
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)