Query psy13975
Match_columns 415
No_of_seqs 473 out of 2402
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 16:23:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3905|consensus 100.0 1.3E-96 3E-101 694.6 28.3 365 12-408 48-428 (473)
2 PF05783 DLIC: Dynein light in 100.0 1.4E-86 3E-91 678.3 32.4 381 19-408 25-416 (472)
3 COG1120 FepC ABC-type cobalami 99.9 7.6E-25 1.6E-29 207.3 15.3 175 2-243 14-206 (258)
4 COG3638 ABC-type phosphate/pho 99.9 4E-24 8.6E-29 196.7 17.0 194 2-250 16-221 (258)
5 COG1126 GlnQ ABC-type polar am 99.9 9.9E-25 2.2E-29 198.3 12.1 166 2-231 14-195 (240)
6 COG1124 DppF ABC-type dipeptid 99.9 4E-23 8.6E-28 191.2 16.0 184 4-249 21-214 (252)
7 COG1116 TauB ABC-type nitrate/ 99.9 1.3E-23 2.7E-28 195.9 12.4 179 3-250 16-204 (248)
8 COG3839 MalK ABC-type sugar tr 99.9 2.9E-23 6.4E-28 203.6 14.7 164 5-232 18-194 (338)
9 COG1136 SalX ABC-type antimicr 99.9 2.9E-23 6.3E-28 192.9 12.7 165 4-231 19-202 (226)
10 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2.6E-23 5.7E-28 196.0 12.3 172 4-243 18-206 (254)
11 COG3842 PotA ABC-type spermidi 99.9 1.1E-22 2.3E-27 200.7 14.6 169 3-235 18-200 (352)
12 COG0411 LivG ABC-type branched 99.9 5.3E-23 1.1E-27 190.5 10.6 181 4-251 18-224 (250)
13 COG1135 AbcC ABC-type metal io 99.9 4.3E-22 9.3E-27 189.8 13.6 169 3-230 19-200 (339)
14 COG1131 CcmA ABC-type multidru 99.9 2.6E-22 5.6E-27 196.1 11.2 166 3-231 18-196 (293)
15 COG0410 LivF ABC-type branched 99.9 2E-21 4.4E-26 178.7 16.3 174 3-241 16-202 (237)
16 PRK11650 ugpC glycerol-3-phosp 99.9 1.7E-21 3.7E-26 195.2 16.7 165 3-231 17-194 (356)
17 TIGR02314 ABC_MetN D-methionin 99.9 1.7E-21 3.8E-26 194.0 15.7 176 4-242 19-207 (343)
18 COG1137 YhbG ABC-type (unclass 99.9 5.9E-23 1.3E-27 184.4 4.6 183 3-249 17-211 (243)
19 COG1118 CysA ABC-type sulfate/ 99.9 1.7E-21 3.7E-26 185.4 14.8 171 3-241 15-203 (345)
20 cd03259 ABC_Carb_Solutes_like 99.9 2.5E-21 5.4E-26 180.4 15.7 169 3-231 13-190 (213)
21 cd03261 ABC_Org_Solvent_Resist 99.9 2.4E-21 5.2E-26 183.4 15.4 172 3-231 13-196 (235)
22 COG1125 OpuBA ABC-type proline 99.9 2.3E-21 4.9E-26 180.1 14.1 176 2-243 13-203 (309)
23 cd03265 ABC_DrrA DrrA is the A 99.9 3.3E-21 7.1E-26 180.6 15.5 170 3-231 13-191 (220)
24 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.4E-21 5.3E-26 181.1 14.5 171 3-231 17-200 (218)
25 TIGR01188 drrA daunorubicin re 99.9 2.3E-21 4.9E-26 190.5 14.3 169 3-231 6-183 (302)
26 COG2884 FtsE Predicted ATPase 99.9 4.3E-21 9.2E-26 171.2 14.2 169 2-230 14-195 (223)
27 COG1127 Ttg2A ABC-type transpo 99.9 2.4E-21 5.1E-26 178.9 13.0 179 2-241 20-211 (263)
28 TIGR01186 proV glycine betaine 99.9 4.7E-21 1E-25 192.0 16.2 178 3-242 6-196 (363)
29 cd03301 ABC_MalK_N The N-termi 99.9 8.4E-21 1.8E-25 176.8 16.7 169 3-231 13-190 (213)
30 cd03226 ABC_cobalt_CbiO_domain 99.9 3E-21 6.5E-26 178.9 13.6 169 3-231 13-185 (205)
31 cd03296 ABC_CysA_sulfate_impor 99.9 6E-21 1.3E-25 181.1 15.8 177 3-231 15-196 (239)
32 TIGR00960 3a0501s02 Type II (G 99.9 3.4E-21 7.3E-26 180.0 13.6 169 4-231 17-197 (216)
33 TIGR03265 PhnT2 putative 2-ami 99.9 5E-21 1.1E-25 191.7 15.6 165 3-231 17-194 (353)
34 TIGR02673 FtsE cell division A 99.9 6.2E-21 1.3E-25 177.9 14.9 171 3-231 15-196 (214)
35 TIGR02315 ABC_phnC phosphonate 99.9 5.5E-21 1.2E-25 181.6 14.8 178 3-231 15-205 (243)
36 cd03225 ABC_cobalt_CbiO_domain 99.9 5.6E-21 1.2E-25 177.7 14.6 171 3-231 14-193 (211)
37 cd03224 ABC_TM1139_LivF_branch 99.9 7.3E-21 1.6E-25 178.3 15.4 172 3-231 13-191 (222)
38 TIGR01166 cbiO cobalt transpor 99.9 5.3E-21 1.2E-25 175.2 14.1 174 3-232 5-187 (190)
39 PRK13537 nodulation ABC transp 99.9 6.6E-21 1.4E-25 187.5 15.6 177 3-242 20-204 (306)
40 PRK11153 metN DL-methionine tr 99.9 6.1E-21 1.3E-25 190.5 15.4 170 3-231 18-200 (343)
41 PRK11000 maltose/maltodextrin 99.9 7.5E-21 1.6E-25 191.6 16.0 165 3-231 16-193 (369)
42 PRK11300 livG leucine/isoleuci 99.9 8.9E-21 1.9E-25 181.6 15.8 180 3-231 18-213 (255)
43 TIGR02211 LolD_lipo_ex lipopro 99.9 7E-21 1.5E-25 178.4 14.7 171 3-231 18-201 (221)
44 cd03219 ABC_Mj1267_LivG_branch 99.9 5.5E-21 1.2E-25 180.8 14.0 171 3-231 13-202 (236)
45 PRK09452 potA putrescine/sperm 99.9 1.1E-20 2.3E-25 190.5 16.6 165 3-231 27-204 (375)
46 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.2E-20 2.5E-25 176.9 15.8 166 3-231 17-191 (220)
47 cd03268 ABC_BcrA_bacitracin_re 99.9 1.4E-20 2.9E-25 174.9 16.0 168 3-231 13-185 (208)
48 PRK10851 sulfate/thiosulfate t 99.9 1E-20 2.2E-25 189.4 16.3 165 3-231 15-196 (353)
49 PRK09536 btuD corrinoid ABC tr 99.9 1E-20 2.2E-25 191.9 16.2 178 3-230 16-197 (402)
50 COG4555 NatA ABC-type Na+ tran 99.9 5.3E-21 1.1E-25 172.0 12.4 138 5-158 17-162 (245)
51 KOG3929|consensus 99.9 4.8E-22 1E-26 183.8 5.8 238 20-285 46-291 (363)
52 cd03266 ABC_NatA_sodium_export 99.9 1.6E-20 3.4E-25 175.6 16.1 168 4-231 19-195 (218)
53 PRK13536 nodulation factor exp 99.9 4.3E-21 9.3E-26 191.2 13.0 177 3-243 54-239 (340)
54 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.3E-20 2.7E-25 182.2 15.9 169 3-231 37-220 (269)
55 PRK11629 lolD lipoprotein tran 99.9 8.8E-21 1.9E-25 179.3 14.5 170 3-231 22-205 (233)
56 PRK11432 fbpC ferric transport 99.8 1.9E-20 4E-25 187.3 17.3 165 3-231 19-196 (351)
57 cd03258 ABC_MetN_methionine_tr 99.8 6.5E-21 1.4E-25 180.1 13.2 171 4-231 19-200 (233)
58 cd03235 ABC_Metallic_Cations A 99.8 4.5E-21 9.8E-26 178.7 12.0 173 3-231 12-191 (213)
59 cd03218 ABC_YhbG The ABC trans 99.8 1.2E-20 2.6E-25 178.1 14.9 169 3-231 13-192 (232)
60 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 6.5E-21 1.4E-25 180.5 13.2 170 3-231 14-192 (236)
61 TIGR03608 L_ocin_972_ABC putat 99.8 5.4E-21 1.2E-25 177.1 12.3 170 3-232 11-194 (206)
62 PRK10584 putative ABC transpor 99.8 1.2E-20 2.6E-25 177.7 14.7 169 4-231 24-206 (228)
63 COG3845 ABC-type uncharacteriz 99.8 5.3E-21 1.1E-25 192.0 12.9 170 3-232 17-200 (501)
64 COG1117 PstB ABC-type phosphat 99.8 1.2E-20 2.6E-25 171.3 13.8 148 2-159 19-179 (253)
65 cd03256 ABC_PhnC_transporter A 99.8 1E-20 2.2E-25 179.4 14.1 177 3-231 14-204 (241)
66 TIGR01288 nodI ATP-binding ABC 99.8 1.2E-20 2.7E-25 185.3 15.1 169 3-231 17-194 (303)
67 TIGR03258 PhnT 2-aminoethylpho 99.8 1.3E-20 2.9E-25 189.0 15.2 165 3-231 18-198 (362)
68 PRK13637 cbiO cobalt transport 99.8 1.6E-20 3.5E-25 183.1 15.3 173 3-231 20-204 (287)
69 TIGR03410 urea_trans_UrtE urea 99.8 2.8E-20 6E-25 175.4 16.2 173 3-231 13-191 (230)
70 PRK11614 livF leucine/isoleuci 99.8 4.2E-20 9.2E-25 175.0 17.3 171 3-231 18-196 (237)
71 cd03257 ABC_NikE_OppD_transpor 99.8 9.3E-21 2E-25 178.2 12.6 175 4-231 19-205 (228)
72 PRK11607 potG putrescine trans 99.8 2.1E-20 4.6E-25 188.5 16.0 164 4-231 33-209 (377)
73 PRK10908 cell division protein 99.8 2.1E-20 4.5E-25 175.4 14.9 169 3-231 15-196 (222)
74 PRK11831 putative ABC transpor 99.8 2.2E-20 4.9E-25 180.4 15.5 170 3-231 20-203 (269)
75 cd03292 ABC_FtsE_transporter F 99.8 2.1E-20 4.5E-25 174.2 14.7 171 3-231 14-195 (214)
76 TIGR03411 urea_trans_UrtD urea 99.8 1.8E-20 3.8E-25 178.1 14.4 177 3-231 15-201 (242)
77 COG1122 CbiO ABC-type cobalt t 99.8 2.3E-20 4.9E-25 176.1 14.8 182 4-243 18-206 (235)
78 PRK11248 tauB taurine transpor 99.8 4.5E-20 9.7E-25 177.1 17.1 167 3-231 14-188 (255)
79 PRK11247 ssuB aliphatic sulfon 99.8 3.8E-20 8.2E-25 177.7 16.5 162 3-231 25-193 (257)
80 cd03269 ABC_putative_ATPase Th 99.8 2E-20 4.2E-25 174.1 14.0 166 3-231 13-187 (210)
81 cd03295 ABC_OpuCA_Osmoprotecti 99.8 3.8E-20 8.2E-25 176.0 16.1 172 3-231 14-195 (242)
82 PRK13641 cbiO cobalt transport 99.8 2.1E-20 4.6E-25 182.3 14.7 171 3-231 20-204 (287)
83 PRK13634 cbiO cobalt transport 99.8 2.4E-20 5.1E-25 182.3 14.9 180 3-242 20-212 (290)
84 cd03262 ABC_HisP_GlnQ_permease 99.8 1.9E-20 4.2E-25 174.3 13.5 171 3-231 13-194 (213)
85 cd03231 ABC_CcmA_heme_exporter 99.8 2.7E-20 5.8E-25 172.2 14.2 166 3-232 13-185 (201)
86 PRK10247 putative ABC transpor 99.8 2.2E-20 4.8E-25 175.8 13.9 171 3-231 20-197 (225)
87 TIGR03005 ectoine_ehuA ectoine 99.8 3.4E-20 7.5E-25 177.3 15.4 172 3-231 13-206 (252)
88 PRK13650 cbiO cobalt transport 99.8 2.2E-20 4.7E-25 181.5 14.2 171 4-231 21-200 (279)
89 PRK13538 cytochrome c biogenes 99.8 2.4E-20 5.2E-25 172.9 13.8 169 3-231 14-188 (204)
90 PRK13647 cbiO cobalt transport 99.8 3.3E-20 7.2E-25 179.7 15.4 178 3-242 18-204 (274)
91 PRK13540 cytochrome c biogenes 99.8 2.3E-20 5E-25 172.5 13.6 166 3-232 14-187 (200)
92 PRK10575 iron-hydroxamate tran 99.8 3.4E-20 7.4E-25 178.8 15.1 179 3-231 24-207 (265)
93 cd03267 ABC_NatA_like Similar 99.8 4.3E-20 9.4E-25 175.1 15.5 171 3-231 34-213 (236)
94 cd03263 ABC_subfamily_A The AB 99.8 4.3E-20 9.2E-25 172.9 15.2 168 3-231 15-191 (220)
95 TIGR01189 ccmA heme ABC export 99.8 3.1E-20 6.8E-25 171.3 14.1 169 3-232 13-187 (198)
96 PRK13646 cbiO cobalt transport 99.8 2.8E-20 6.1E-25 181.4 14.5 180 3-242 20-212 (286)
97 PRK14250 phosphate ABC transpo 99.8 3.9E-20 8.4E-25 175.9 15.0 174 3-231 16-191 (241)
98 PRK10253 iron-enterobactin tra 99.8 2.9E-20 6.3E-25 179.3 14.3 188 3-243 20-211 (265)
99 PRK10895 lipopolysaccharide AB 99.8 3.9E-20 8.5E-25 175.7 14.8 177 3-231 16-196 (241)
100 cd03229 ABC_Class3 This class 99.8 6.4E-20 1.4E-24 166.5 15.4 147 3-231 13-160 (178)
101 PRK11308 dppF dipeptide transp 99.8 4.5E-20 9.8E-25 183.1 15.6 171 4-231 29-214 (327)
102 PRK10070 glycine betaine trans 99.8 4.1E-20 9E-25 187.3 15.6 169 4-231 42-224 (400)
103 cd03298 ABC_ThiQ_thiamine_tran 99.8 8.8E-20 1.9E-24 169.8 16.6 172 7-231 15-188 (211)
104 PRK13635 cbiO cobalt transport 99.8 3.6E-20 7.8E-25 180.0 14.4 178 3-231 20-200 (279)
105 PRK15112 antimicrobial peptide 99.8 6E-20 1.3E-24 177.3 15.5 172 3-231 26-209 (267)
106 PRK13651 cobalt transporter AT 99.8 6.4E-20 1.4E-24 180.3 16.0 178 4-242 21-231 (305)
107 COG2274 SunT ABC-type bacterio 99.8 1.6E-20 3.5E-25 201.5 12.7 180 3-232 486-668 (709)
108 PRK09493 glnQ glutamine ABC tr 99.8 6.9E-20 1.5E-24 173.9 15.5 170 3-231 14-195 (240)
109 TIGR02769 nickel_nikE nickel i 99.8 4.4E-20 9.5E-25 178.0 14.0 173 3-231 24-210 (265)
110 PRK13652 cbiO cobalt transport 99.8 7.3E-20 1.6E-24 177.6 15.5 171 4-231 18-197 (277)
111 TIGR03522 GldA_ABC_ATP gliding 99.8 3.1E-20 6.8E-25 182.3 13.0 176 3-243 15-199 (301)
112 PRK13636 cbiO cobalt transport 99.8 3.5E-20 7.6E-25 180.4 13.2 172 3-231 19-201 (283)
113 PRK13645 cbiO cobalt transport 99.8 6.9E-20 1.5E-24 178.8 15.3 174 4-231 25-210 (289)
114 COG1129 MglA ABC-type sugar tr 99.8 6.8E-20 1.5E-24 187.2 15.7 167 3-231 21-204 (500)
115 PRK15079 oligopeptide ABC tran 99.8 9.3E-20 2E-24 181.0 16.3 179 4-241 35-227 (331)
116 PRK11022 dppD dipeptide transp 99.8 8.3E-20 1.8E-24 181.2 15.8 171 4-231 21-213 (326)
117 cd03252 ABCC_Hemolysin The ABC 99.8 6.2E-20 1.3E-24 173.9 14.3 176 3-231 15-196 (237)
118 PRK11701 phnK phosphonate C-P 99.8 8.3E-20 1.8E-24 175.3 15.4 172 3-231 19-211 (258)
119 PRK13548 hmuV hemin importer A 99.8 7.1E-20 1.5E-24 175.9 14.8 176 3-231 15-200 (258)
120 cd03215 ABC_Carb_Monos_II This 99.8 9.3E-20 2E-24 166.0 14.7 149 5-231 15-163 (182)
121 TIGR01184 ntrCD nitrate transp 99.8 1.3E-19 2.7E-24 171.2 16.1 164 6-231 1-174 (230)
122 TIGR01978 sufC FeS assembly AT 99.8 3.9E-20 8.5E-25 175.7 12.7 173 3-231 13-203 (243)
123 cd03214 ABC_Iron-Siderophores_ 99.8 2.5E-20 5.5E-25 169.4 10.8 146 3-231 12-157 (180)
124 PRK13633 cobalt transporter AT 99.8 5.3E-20 1.1E-24 178.9 13.7 172 3-231 23-204 (280)
125 PRK13644 cbiO cobalt transport 99.8 7.4E-20 1.6E-24 177.3 14.5 171 3-231 15-195 (274)
126 PRK13632 cbiO cobalt transport 99.8 1E-19 2.2E-24 176.0 15.2 172 3-231 22-202 (271)
127 TIGR02142 modC_ABC molybdenum 99.8 1.3E-19 2.8E-24 181.8 16.2 167 8-241 15-197 (354)
128 cd03230 ABC_DR_subfamily_A Thi 99.8 1.4E-19 3E-24 163.6 14.8 142 3-231 13-154 (173)
129 TIGR02323 CP_lyasePhnK phospho 99.8 1E-19 2.2E-24 174.1 14.7 172 3-231 16-208 (253)
130 cd03233 ABC_PDR_domain1 The pl 99.8 1.4E-19 3E-24 167.7 15.1 155 2-229 19-176 (202)
131 PRK09984 phosphonate/organopho 99.8 1.1E-19 2.4E-24 174.8 15.0 178 3-231 17-212 (262)
132 PRK11231 fecE iron-dicitrate t 99.8 9.9E-20 2.1E-24 174.5 14.5 177 3-231 15-197 (255)
133 PRK13543 cytochrome c biogenes 99.8 1E-19 2.2E-24 170.0 14.1 167 3-231 24-196 (214)
134 PRK13648 cbiO cobalt transport 99.8 9.1E-20 2E-24 176.2 14.1 171 4-231 23-202 (269)
135 TIGR02770 nickel_nikD nickel i 99.8 2.1E-19 4.6E-24 169.6 16.2 170 5-231 1-185 (230)
136 TIGR02982 heterocyst_DevA ABC 99.8 9.2E-20 2E-24 170.9 13.6 171 3-231 18-201 (220)
137 PRK11144 modC molybdate transp 99.8 1.4E-19 3E-24 181.4 15.7 162 7-231 15-188 (352)
138 PRK13539 cytochrome c biogenes 99.8 1.2E-19 2.6E-24 168.7 14.2 167 3-232 15-187 (207)
139 PRK11264 putative amino-acid A 99.8 1.3E-19 2.7E-24 173.1 14.6 171 3-231 16-203 (250)
140 cd03260 ABC_PstB_phosphate_tra 99.8 9.6E-20 2.1E-24 171.4 13.6 168 3-231 13-199 (227)
141 PRK13631 cbiO cobalt transport 99.8 9.7E-20 2.1E-24 180.2 14.2 171 4-231 40-235 (320)
142 PRK09544 znuC high-affinity zi 99.8 7.7E-20 1.7E-24 175.0 13.1 157 3-231 17-180 (251)
143 TIGR01277 thiQ thiamine ABC tr 99.8 2.8E-19 6E-24 166.8 16.5 167 5-231 13-188 (213)
144 TIGR00968 3a0106s01 sulfate AB 99.8 1.7E-19 3.7E-24 171.1 15.3 175 3-231 13-190 (237)
145 TIGR03740 galliderm_ABC gallid 99.8 7.3E-20 1.6E-24 171.8 12.5 166 3-231 13-183 (223)
146 PRK13642 cbiO cobalt transport 99.8 1.1E-19 2.4E-24 176.3 14.2 171 4-231 21-200 (277)
147 cd03216 ABC_Carb_Monos_I This 99.8 1.2E-19 2.5E-24 162.6 13.1 127 3-231 13-141 (163)
148 PRK13638 cbiO cobalt transport 99.8 1.2E-19 2.7E-24 175.4 14.3 170 3-231 14-195 (271)
149 TIGR03873 F420-0_ABC_ATP propo 99.8 1.6E-19 3.6E-24 173.1 14.8 177 3-231 14-196 (256)
150 PRK15056 manganese/iron transp 99.8 1.2E-19 2.5E-24 175.7 13.9 174 3-231 20-201 (272)
151 PRK11124 artP arginine transpo 99.8 1.5E-19 3.3E-24 171.7 14.4 171 3-231 15-200 (242)
152 PRK15093 antimicrobial peptide 99.8 1.6E-19 3.5E-24 179.4 15.1 179 4-241 21-224 (330)
153 PRK13643 cbiO cobalt transport 99.8 1.3E-19 2.8E-24 176.9 14.1 170 4-231 20-203 (288)
154 cd03264 ABC_drug_resistance_li 99.8 1.4E-19 3E-24 168.4 13.6 167 3-231 13-188 (211)
155 TIGR02868 CydC thiol reductant 99.8 7.8E-20 1.7E-24 192.7 13.3 177 3-231 348-528 (529)
156 PRK15439 autoinducer 2 ABC tra 99.8 1.2E-19 2.5E-24 190.6 14.6 165 3-231 24-199 (510)
157 PRK13649 cbiO cobalt transport 99.8 1.2E-19 2.6E-24 176.3 13.6 172 3-231 20-204 (280)
158 cd03299 ABC_ModC_like Archeal 99.8 2.3E-19 5E-24 169.9 15.1 169 4-231 13-189 (235)
159 CHL00131 ycf16 sulfate ABC tra 99.8 2.1E-19 4.6E-24 171.7 14.7 181 3-231 20-210 (252)
160 cd03254 ABCC_Glucan_exporter_l 99.8 1.5E-19 3.1E-24 170.3 13.3 178 3-231 16-197 (229)
161 PRK09473 oppD oligopeptide tra 99.8 5.1E-19 1.1E-23 175.7 17.6 170 4-230 30-220 (330)
162 COG3840 ThiQ ABC-type thiamine 99.8 2.8E-19 6.1E-24 158.6 13.9 168 8-243 17-197 (231)
163 TIGR03415 ABC_choXWV_ATP choli 99.8 3.2E-19 6.9E-24 179.8 16.3 177 3-242 37-231 (382)
164 PRK10771 thiQ thiamine transpo 99.8 5.5E-19 1.2E-23 167.0 16.8 172 6-231 15-189 (232)
165 PRK10418 nikD nickel transport 99.8 8.3E-19 1.8E-23 168.1 18.3 170 3-231 16-200 (254)
166 cd03251 ABCC_MsbA MsbA is an e 99.8 1.5E-19 3.2E-24 170.9 12.8 177 4-231 16-196 (234)
167 cd03300 ABC_PotA_N PotA is an 99.8 2.5E-19 5.5E-24 169.3 14.3 169 3-231 13-190 (232)
168 KOG0084|consensus 99.8 1.1E-19 2.3E-24 162.6 11.0 160 20-250 10-174 (205)
169 PRK13640 cbiO cobalt transport 99.8 2E-19 4.4E-24 175.0 14.0 172 3-231 20-203 (282)
170 cd03248 ABCC_TAP TAP, the Tran 99.8 1.9E-19 4.2E-24 169.2 13.3 175 4-231 28-208 (226)
171 cd03253 ABCC_ATM1_transporter 99.8 2.2E-19 4.7E-24 169.9 13.7 165 3-231 14-195 (236)
172 PRK10261 glutathione transport 99.8 2.8E-19 6E-24 191.9 15.8 178 4-241 338-529 (623)
173 PRK13639 cbiO cobalt transport 99.8 2.4E-19 5.2E-24 173.8 13.9 178 4-243 16-204 (275)
174 cd03217 ABC_FeS_Assembly ABC-t 99.8 2.6E-19 5.7E-24 165.5 13.4 149 3-231 13-163 (200)
175 cd03245 ABCC_bacteriocin_expor 99.8 4.5E-19 9.7E-24 166.0 14.9 164 3-231 17-198 (220)
176 PRK10419 nikE nickel transport 99.8 3.2E-19 6.9E-24 172.3 14.2 174 3-231 25-211 (268)
177 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 2E-19 4.4E-24 195.2 14.3 177 3-232 466-645 (686)
178 PRK09700 D-allose transporter 99.8 2.1E-19 4.6E-24 188.7 13.9 177 3-230 18-203 (510)
179 PRK10619 histidine/lysine/argi 99.8 3.5E-19 7.6E-24 170.9 14.1 170 3-231 18-211 (257)
180 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 2.6E-19 5.7E-24 169.7 13.0 165 3-231 16-197 (238)
181 PRK14247 phosphate ABC transpo 99.8 4.3E-19 9.3E-24 169.5 14.4 170 3-231 16-204 (250)
182 COG1119 ModF ABC-type molybden 99.8 3.3E-20 7.2E-25 172.0 6.4 194 2-248 43-245 (257)
183 PRK13547 hmuV hemin importer A 99.8 4.6E-19 1E-23 171.6 14.7 180 3-231 14-214 (272)
184 cd03246 ABCC_Protease_Secretio 99.8 5.4E-19 1.2E-23 159.7 14.1 140 3-231 15-155 (173)
185 cd03234 ABCG_White The White s 99.8 4E-19 8.6E-24 167.2 13.8 168 3-232 20-203 (226)
186 COG4619 ABC-type uncharacteriz 99.8 4.6E-20 1E-24 161.5 6.8 176 2-236 15-198 (223)
187 COG4181 Predicted ABC-type tra 99.8 2.1E-19 4.6E-24 157.9 10.9 176 4-231 24-206 (228)
188 cd03290 ABCC_SUR1_N The SUR do 99.8 5.3E-19 1.1E-23 165.4 14.4 167 3-232 14-202 (218)
189 PRK11174 cysteine/glutathione 99.8 3E-19 6.6E-24 190.6 14.2 179 3-232 363-544 (588)
190 PRK09580 sufC cysteine desulfu 99.8 4.1E-19 8.9E-24 169.3 13.6 181 3-231 14-204 (248)
191 PRK10762 D-ribose transporter 99.8 2.4E-19 5.2E-24 187.9 13.0 175 3-231 17-200 (501)
192 COG4604 CeuD ABC-type enteroch 99.8 1.4E-19 3E-24 162.4 9.3 198 2-252 13-237 (252)
193 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 5.7E-19 1.2E-23 166.1 14.1 167 3-231 35-201 (224)
194 PRK10982 galactose/methyl gala 99.8 3.9E-19 8.6E-24 185.8 14.1 178 3-231 11-193 (491)
195 TIGR02324 CP_lyasePhnL phospho 99.8 4.9E-19 1.1E-23 166.3 13.3 169 4-231 22-208 (224)
196 COG4608 AppF ABC-type oligopep 99.8 2.8E-19 6E-24 168.9 11.6 155 4-248 27-181 (268)
197 PRK09700 D-allose transporter 99.8 2.8E-19 6.2E-24 187.7 13.0 179 4-231 277-468 (510)
198 COG1123 ATPase components of v 99.8 4E-19 8.6E-24 182.7 13.5 184 4-249 305-502 (539)
199 COG4559 ABC-type hemin transpo 99.8 5.9E-19 1.3E-23 160.1 12.9 60 2-65 13-72 (259)
200 cd03250 ABCC_MRP_domain1 Domai 99.8 5.9E-19 1.3E-23 163.5 13.3 156 4-231 19-187 (204)
201 KOG0058|consensus 99.8 2E-19 4.3E-24 187.9 11.2 154 2-161 480-636 (716)
202 PRK14267 phosphate ABC transpo 99.8 1.6E-18 3.5E-23 165.8 16.6 170 3-231 17-207 (253)
203 PRK14259 phosphate ABC transpo 99.8 2.9E-19 6.3E-24 172.7 11.6 174 3-231 26-212 (269)
204 PRK11288 araG L-arabinose tran 99.8 3.6E-19 7.9E-24 186.5 13.1 165 3-231 17-199 (501)
205 TIGR00972 3a0107s01c2 phosphat 99.8 7.2E-19 1.6E-23 167.7 14.0 167 3-231 14-202 (247)
206 PRK14235 phosphate transporter 99.8 2.9E-19 6.3E-24 172.5 11.4 171 3-231 32-221 (267)
207 PRK14268 phosphate ABC transpo 99.8 6.8E-19 1.5E-23 169.1 13.7 170 3-231 25-212 (258)
208 PRK10744 pstB phosphate transp 99.8 7.2E-19 1.6E-23 169.0 13.8 175 3-231 26-214 (260)
209 cd03213 ABCG_EPDR ABCG transpo 99.8 8.2E-19 1.8E-23 161.5 13.6 148 3-232 22-171 (194)
210 cd03247 ABCC_cytochrome_bd The 99.8 4.1E-19 9E-24 161.1 11.5 141 4-231 16-156 (178)
211 cd03369 ABCC_NFT1 Domain 2 of 99.8 7E-19 1.5E-23 163.3 12.9 163 3-231 21-183 (207)
212 PRK14241 phosphate transporter 99.8 1.1E-18 2.5E-23 167.4 14.7 171 3-231 17-206 (258)
213 cd03288 ABCC_SUR2 The SUR doma 99.8 6.9E-19 1.5E-23 168.9 13.2 167 3-231 34-214 (257)
214 PRK13549 xylose transporter AT 99.8 1E-18 2.2E-23 183.4 15.4 178 3-231 18-202 (506)
215 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 3.9E-19 8.4E-24 193.7 12.6 178 3-232 492-672 (710)
216 cd03232 ABC_PDR_domain2 The pl 99.8 8.2E-19 1.8E-23 161.2 12.8 147 3-232 20-168 (192)
217 PRK10790 putative multidrug tr 99.8 5.4E-19 1.2E-23 188.8 13.4 179 3-232 354-535 (592)
218 COG4152 ABC-type uncharacteriz 99.8 8.2E-19 1.8E-23 162.2 12.7 170 2-238 14-195 (300)
219 PRK15134 microcin C ABC transp 99.8 1E-18 2.2E-23 184.3 15.3 179 3-242 299-492 (529)
220 PRK14269 phosphate ABC transpo 99.8 7.7E-19 1.7E-23 167.5 13.0 170 3-231 15-200 (246)
221 PRK13549 xylose transporter AT 99.8 4.3E-19 9.3E-24 186.2 12.4 180 3-231 275-464 (506)
222 cd03244 ABCC_MRP_domain2 Domai 99.8 9.5E-19 2.1E-23 163.9 13.3 164 3-231 17-197 (221)
223 cd03237 ABC_RNaseL_inhibitor_d 99.8 2.5E-18 5.4E-23 164.1 16.3 159 4-231 8-175 (246)
224 KOG0078|consensus 99.8 4.3E-19 9.4E-24 160.7 10.4 159 20-249 13-175 (207)
225 PRK14242 phosphate transporter 99.8 9.5E-19 2.1E-23 167.4 13.3 170 3-231 19-207 (253)
226 COG4586 ABC-type uncharacteriz 99.8 1.8E-19 3.9E-24 168.9 7.9 165 3-232 37-217 (325)
227 TIGR02857 CydD thiol reductant 99.8 1E-18 2.3E-23 184.2 14.6 180 3-232 335-517 (529)
228 PRK10762 D-ribose transporter 99.8 5.2E-19 1.1E-23 185.3 12.2 185 4-241 266-460 (501)
229 PRK03695 vitamin B12-transport 99.8 2.4E-18 5.2E-23 164.3 15.7 170 5-231 11-192 (248)
230 TIGR01193 bacteriocin_ABC ABC- 99.8 5.3E-19 1.2E-23 192.6 12.6 178 3-232 487-669 (708)
231 PRK14254 phosphate ABC transpo 99.8 2.5E-18 5.4E-23 167.6 16.0 168 3-231 52-238 (285)
232 TIGR03375 type_I_sec_LssB type 99.8 6E-19 1.3E-23 191.8 12.9 180 3-232 478-660 (694)
233 PRK15134 microcin C ABC transp 99.8 2.3E-18 5E-23 181.6 16.6 173 3-231 22-216 (529)
234 cd03228 ABCC_MRP_Like The MRP 99.8 1.4E-18 3.1E-23 156.7 12.9 138 4-231 16-154 (171)
235 TIGR01842 type_I_sec_PrtD type 99.8 9.2E-19 2E-23 185.3 13.6 180 3-232 331-514 (544)
236 TIGR02633 xylG D-xylose ABC tr 99.8 1.1E-18 2.4E-23 182.8 14.0 177 3-230 14-199 (500)
237 PRK14273 phosphate ABC transpo 99.8 1.5E-18 3.3E-23 166.1 13.7 171 3-231 20-208 (254)
238 PRK13541 cytochrome c biogenes 99.8 2.6E-18 5.6E-23 158.1 14.4 161 5-232 15-183 (195)
239 PRK14248 phosphate ABC transpo 99.8 1.1E-18 2.5E-23 168.4 12.5 178 3-231 34-222 (268)
240 PRK14256 phosphate ABC transpo 99.8 2.1E-18 4.6E-23 164.9 14.2 169 3-231 17-206 (252)
241 TIGR03269 met_CoM_red_A2 methy 99.8 1.2E-18 2.7E-23 183.3 13.7 171 3-231 13-228 (520)
242 PRK10938 putative molybdenum t 99.8 7.6E-19 1.6E-23 183.6 11.8 172 3-231 16-194 (490)
243 TIGR03269 met_CoM_red_A2 methy 99.8 1.9E-18 4.2E-23 181.9 14.8 178 3-241 297-493 (520)
244 PRK13657 cyclic beta-1,2-gluca 99.8 1.7E-18 3.6E-23 184.9 14.4 179 3-232 348-530 (588)
245 PRK11176 lipid transporter ATP 99.8 9E-19 2E-23 186.7 12.3 179 3-232 356-539 (582)
246 PRK11288 araG L-arabinose tran 99.8 8.7E-19 1.9E-23 183.7 11.7 179 4-231 267-455 (501)
247 COG1123 ATPase components of v 99.8 5.6E-19 1.2E-23 181.6 9.9 171 4-230 23-213 (539)
248 PRK14244 phosphate ABC transpo 99.8 1.8E-18 4E-23 165.3 12.7 170 3-231 18-207 (251)
249 PRK14253 phosphate ABC transpo 99.8 4.1E-18 8.9E-23 162.6 14.9 171 3-231 16-203 (249)
250 PRK14240 phosphate transporter 99.8 5.6E-18 1.2E-22 161.8 15.7 169 3-231 16-204 (250)
251 PRK14251 phosphate ABC transpo 99.8 2.9E-18 6.4E-23 163.8 13.8 171 3-231 17-205 (251)
252 TIGR02633 xylG D-xylose ABC tr 99.8 3.8E-18 8.3E-23 178.8 15.7 183 3-241 273-468 (500)
253 PRK15439 autoinducer 2 ABC tra 99.8 9.3E-19 2E-23 183.8 11.1 181 4-241 277-468 (510)
254 KOG0098|consensus 99.8 9.7E-19 2.1E-23 154.8 9.4 159 20-249 7-169 (216)
255 PRK14249 phosphate ABC transpo 99.8 3E-18 6.5E-23 163.8 13.6 178 3-231 17-205 (251)
256 cd03223 ABCD_peroxisomal_ALDP 99.8 3.5E-18 7.6E-23 153.5 13.1 134 3-231 14-147 (166)
257 PRK14258 phosphate ABC transpo 99.8 4.8E-18 1E-22 163.5 14.8 171 4-231 21-210 (261)
258 PRK10982 galactose/methyl gala 99.8 1.2E-18 2.6E-23 182.1 11.4 175 4-231 262-450 (491)
259 PRK10789 putative multidrug tr 99.8 1.9E-18 4.2E-23 183.7 13.1 180 3-232 328-510 (569)
260 PRK14275 phosphate ABC transpo 99.8 1.6E-18 3.5E-23 169.0 11.4 170 3-230 52-239 (286)
261 cd03297 ABC_ModC_molybdenum_tr 99.8 4.7E-18 1E-22 158.6 14.1 164 8-231 16-191 (214)
262 PRK10938 putative molybdenum t 99.8 9.8E-19 2.1E-23 182.8 10.6 191 3-248 273-474 (490)
263 PRK14272 phosphate ABC transpo 99.8 7.1E-18 1.5E-22 161.2 15.6 171 3-231 17-206 (252)
264 PRK14262 phosphate ABC transpo 99.8 9.3E-18 2E-22 160.3 16.2 171 3-231 16-204 (250)
265 PRK10261 glutathione transport 99.8 2.3E-18 4.9E-23 184.8 13.4 179 4-242 30-235 (623)
266 TIGR02203 MsbA_lipidA lipid A 99.8 1.7E-18 3.6E-23 184.1 12.2 179 3-232 345-528 (571)
267 PRK14271 phosphate ABC transpo 99.8 5.2E-18 1.1E-22 164.6 14.6 168 3-231 34-221 (276)
268 PRK14243 phosphate transporter 99.8 2.3E-18 5.1E-23 165.9 11.8 183 3-243 23-217 (264)
269 cd03289 ABCC_CFTR2 The CFTR su 99.8 4.1E-18 8.8E-23 165.1 13.5 164 3-231 17-196 (275)
270 PRK14252 phosphate ABC transpo 99.8 7.2E-18 1.6E-22 162.6 15.1 171 3-231 29-219 (265)
271 PRK14270 phosphate ABC transpo 99.8 7.6E-18 1.7E-22 161.0 15.1 171 3-231 17-205 (251)
272 PRK14239 phosphate transporter 99.8 4.9E-18 1.1E-22 162.3 13.7 171 3-231 18-206 (252)
273 TIGR01846 type_I_sec_HlyB type 99.8 2.1E-18 4.6E-23 187.5 12.5 180 3-232 470-652 (694)
274 KOG0057|consensus 99.8 1.2E-18 2.6E-23 176.7 9.6 184 3-196 365-552 (591)
275 PRK14237 phosphate transporter 99.8 4.4E-18 9.6E-23 164.3 13.2 171 3-231 33-221 (267)
276 PRK14263 phosphate ABC transpo 99.8 2.8E-18 6.1E-23 165.1 11.5 176 3-231 21-207 (261)
277 PRK14261 phosphate ABC transpo 99.8 9.2E-18 2E-22 160.6 14.7 171 3-231 19-207 (253)
278 PRK11160 cysteine/glutathione 99.8 3.4E-18 7.4E-23 182.0 13.0 172 3-232 353-534 (574)
279 TIGR00958 3a01208 Conjugate Tr 99.8 2.5E-18 5.4E-23 187.3 12.1 150 3-158 494-646 (711)
280 PRK14245 phosphate ABC transpo 99.8 1.3E-17 2.8E-22 159.3 15.3 170 3-231 16-204 (250)
281 PRK14274 phosphate ABC transpo 99.8 8.5E-18 1.9E-22 161.5 14.1 171 3-231 25-213 (259)
282 COG4525 TauB ABC-type taurine 99.8 1.3E-17 2.7E-22 149.7 14.0 160 4-230 19-191 (259)
283 TIGR02204 MsbA_rel ABC transpo 99.8 2.8E-18 6.1E-23 182.7 11.8 180 3-232 353-535 (576)
284 TIGR01192 chvA glucan exporter 99.8 5.8E-18 1.3E-22 180.6 14.2 179 3-231 348-529 (585)
285 PRK14236 phosphate transporter 99.8 7.7E-18 1.7E-22 163.0 13.7 171 3-231 38-226 (272)
286 PRK14238 phosphate transporter 99.8 1.8E-17 3.8E-22 160.4 16.1 169 3-231 37-225 (271)
287 PRK14265 phosphate ABC transpo 99.8 6.3E-18 1.4E-22 163.8 13.0 176 3-231 33-219 (274)
288 cd03222 ABC_RNaseL_inhibitor T 99.8 7.7E-18 1.7E-22 152.7 12.5 119 3-231 13-131 (177)
289 COG0396 sufC Cysteine desulfur 99.8 1.4E-17 2.9E-22 153.1 13.8 178 3-231 17-203 (251)
290 COG4175 ProV ABC-type proline/ 99.8 5.3E-18 1.2E-22 161.9 11.5 169 6-241 44-230 (386)
291 KOG0092|consensus 99.7 6E-18 1.3E-22 150.9 10.7 162 20-254 6-173 (200)
292 PRK14255 phosphate ABC transpo 99.7 1.1E-17 2.3E-22 160.0 13.2 169 3-231 18-206 (252)
293 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 2.2E-17 4.9E-22 144.8 14.0 114 3-231 13-126 (144)
294 PRK14260 phosphate ABC transpo 99.7 7.1E-18 1.5E-22 162.1 11.6 170 3-231 20-208 (259)
295 PRK13409 putative ATPase RIL; 99.7 1.8E-17 3.9E-22 176.3 15.8 151 5-230 354-512 (590)
296 KOG0055|consensus 99.7 5.9E-18 1.3E-22 186.0 12.1 177 3-230 366-546 (1228)
297 COG4167 SapF ABC-type antimicr 99.7 1.4E-17 3E-22 148.0 12.1 176 4-231 27-209 (267)
298 COG0444 DppD ABC-type dipeptid 99.7 4E-17 8.7E-22 157.5 16.4 178 4-241 19-219 (316)
299 PRK14264 phosphate ABC transpo 99.7 1.3E-17 2.9E-22 164.0 13.4 179 3-231 58-258 (305)
300 PRK14257 phosphate ABC transpo 99.7 2.4E-17 5.2E-22 163.7 15.2 171 3-231 95-283 (329)
301 COG4987 CydC ABC-type transpor 99.7 6.1E-18 1.3E-22 171.4 11.0 169 3-229 351-530 (573)
302 TIGR01257 rim_protein retinal- 99.7 1.5E-17 3.1E-22 193.9 15.4 170 3-231 1952-2129(2272)
303 PTZ00265 multidrug resistance 99.7 5.3E-18 1.2E-22 195.9 11.7 181 3-231 1181-1418(1466)
304 cd03291 ABCC_CFTR1 The CFTR su 99.7 2.4E-17 5.3E-22 160.3 14.4 46 3-51 50-95 (282)
305 PRK14246 phosphate ABC transpo 99.7 2.5E-17 5.5E-22 158.2 14.3 170 3-231 23-211 (257)
306 PRK14266 phosphate ABC transpo 99.7 1.4E-17 3.1E-22 159.0 12.5 169 3-231 16-204 (250)
307 COG4148 ModC ABC-type molybdat 99.7 1.9E-17 4.2E-22 155.7 12.8 169 8-243 16-196 (352)
308 PRK13545 tagH teichoic acids e 99.7 2.4E-17 5.1E-22 170.3 14.7 163 4-231 38-202 (549)
309 COG4988 CydD ABC-type transpor 99.7 1.2E-17 2.5E-22 171.5 12.2 171 3-232 334-515 (559)
310 KOG0080|consensus 99.7 6.6E-18 1.4E-22 146.0 8.8 163 20-252 12-178 (209)
311 PRK15177 Vi polysaccharide exp 99.7 3.2E-17 6.9E-22 153.1 14.2 126 4-156 1-131 (213)
312 PF00005 ABC_tran: ABC transpo 99.7 1.4E-18 3E-23 150.2 4.6 131 6-157 1-136 (137)
313 PRK10522 multidrug transporter 99.7 1.4E-17 3E-22 176.4 13.0 169 3-231 336-509 (547)
314 PRK13546 teichoic acids export 99.7 2.2E-17 4.8E-22 159.2 13.2 158 3-231 37-202 (264)
315 COG1132 MdlB ABC-type multidru 99.7 1.1E-17 2.5E-22 177.8 12.3 149 3-158 342-494 (567)
316 TIGR01194 cyc_pep_trnsptr cycl 99.7 1.3E-17 2.9E-22 176.8 12.7 169 4-231 356-530 (555)
317 PLN03232 ABC transporter C fam 99.7 1.2E-17 2.5E-22 194.2 12.2 179 3-231 1249-1429(1495)
318 PLN03130 ABC transporter C fam 99.7 1.5E-17 3.2E-22 193.9 12.9 177 4-231 1253-1432(1622)
319 TIGR03771 anch_rpt_ABC anchore 99.7 2.5E-17 5.3E-22 154.9 11.8 165 11-231 1-172 (223)
320 PRK15064 ABC transporter ATP-b 99.7 2.6E-17 5.6E-22 173.7 13.2 46 3-51 14-59 (530)
321 cd03238 ABC_UvrA The excision 99.7 1.7E-17 3.6E-22 150.4 10.0 140 3-232 8-149 (176)
322 cd00267 ABC_ATPase ABC (ATP-bi 99.7 8.2E-17 1.8E-21 142.9 14.0 126 4-231 13-139 (157)
323 COG4172 ABC-type uncharacteriz 99.7 4.6E-17 9.9E-22 159.8 13.3 182 4-248 301-498 (534)
324 TIGR01257 rim_protein retinal- 99.7 3.4E-17 7.3E-22 190.9 14.5 169 3-231 943-1119(2272)
325 cd03236 ABC_RNaseL_inhibitor_d 99.7 2.1E-17 4.6E-22 158.5 10.6 198 4-269 15-227 (255)
326 PRK11147 ABC transporter ATPas 99.7 4.7E-17 1E-21 175.1 14.3 187 3-273 332-526 (635)
327 PRK15064 ABC transporter ATP-b 99.7 5.7E-17 1.2E-21 171.1 14.3 155 3-231 332-494 (530)
328 cd04121 Rab40 Rab40 subfamily. 99.7 4.7E-17 1E-21 149.3 11.8 158 20-249 7-168 (189)
329 TIGR00957 MRP_assoc_pro multi 99.7 2.8E-17 6.1E-22 191.3 12.4 178 3-231 1299-1479(1522)
330 PLN03211 ABC transporter G-25; 99.7 5.5E-17 1.2E-21 174.7 13.7 170 3-233 81-267 (659)
331 PRK10636 putative ABC transpor 99.7 3E-17 6.5E-22 176.5 11.1 47 2-51 13-59 (638)
332 COG4133 CcmA ABC-type transpor 99.7 1.7E-17 3.8E-22 148.1 7.5 172 3-232 15-190 (209)
333 COG4674 Uncharacterized ABC-ty 99.7 2.5E-17 5.4E-22 147.8 8.4 175 2-242 17-212 (249)
334 PRK11819 putative ABC transpor 99.7 1.4E-16 3E-21 169.1 15.7 46 3-51 20-65 (556)
335 KOG0091|consensus 99.7 3E-17 6.5E-22 142.3 8.6 178 20-275 9-192 (213)
336 PTZ00265 multidrug resistance 99.7 2.6E-17 5.7E-22 190.2 10.9 182 4-231 399-639 (1466)
337 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 9.3E-17 2E-21 146.4 12.3 158 20-248 6-180 (182)
338 COG4598 HisP ABC-type histidin 99.7 3.9E-17 8.3E-22 144.8 9.4 165 3-231 19-211 (256)
339 KOG0094|consensus 99.7 6.9E-17 1.5E-21 144.2 11.0 162 20-251 23-188 (221)
340 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.4E-16 3E-21 169.0 14.9 158 3-230 335-498 (552)
341 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.3E-16 2.9E-21 145.3 12.6 165 21-254 2-172 (182)
342 KOG0087|consensus 99.7 9.5E-17 2.1E-21 145.1 11.1 160 20-250 15-178 (222)
343 PRK11819 putative ABC transpor 99.7 1.4E-16 3.1E-21 169.0 14.4 165 3-241 337-507 (556)
344 PRK10636 putative ABC transpor 99.7 1.7E-16 3.8E-21 170.6 15.1 155 3-231 325-486 (638)
345 PRK10535 macrolide transporter 99.7 2.3E-16 5E-21 170.1 15.5 171 3-232 21-204 (648)
346 PTZ00243 ABC transporter; Prov 99.7 9E-17 1.9E-21 187.0 13.3 175 4-231 1324-1504(1560)
347 cd04131 Rnd Rnd subfamily. Th 99.7 2.3E-16 5E-21 143.2 12.5 156 21-247 3-175 (178)
348 cd04120 Rab12 Rab12 subfamily. 99.7 1.7E-16 3.6E-21 147.1 11.7 156 21-249 2-164 (202)
349 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 3.9E-16 8.4E-21 165.5 15.8 46 3-51 18-63 (552)
350 KOG0055|consensus 99.7 5.5E-17 1.2E-21 178.4 9.6 154 2-161 1002-1158(1228)
351 TIGR01187 potA spermidine/putr 99.7 2E-16 4.3E-21 157.0 12.5 147 24-231 1-160 (325)
352 TIGR01271 CFTR_protein cystic 99.7 2.2E-16 4.7E-21 183.5 14.3 170 3-231 1232-1411(1490)
353 TIGR00954 3a01203 Peroxysomal 99.7 2.7E-16 5.8E-21 169.8 13.6 162 3-232 465-639 (659)
354 COG4618 ArpD ABC-type protease 99.7 3.7E-16 7.9E-21 157.4 11.8 137 2-157 348-500 (580)
355 COG0488 Uup ATPase components 99.7 5.5E-16 1.2E-20 161.8 13.5 47 2-51 15-61 (530)
356 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 4.9E-16 1.1E-20 146.9 11.7 160 20-249 14-189 (232)
357 PRK13409 putative ATPase RIL; 99.7 1.3E-16 2.9E-21 169.6 8.7 168 4-231 88-270 (590)
358 cd04133 Rop_like Rop subfamily 99.7 8E-16 1.7E-20 139.5 12.5 157 21-248 3-173 (176)
359 PLN03073 ABC transporter F fam 99.7 3.3E-16 7.1E-21 169.8 11.1 128 4-158 523-656 (718)
360 cd04117 Rab15 Rab15 subfamily. 99.7 7.7E-16 1.7E-20 136.9 11.6 155 21-246 2-160 (161)
361 cd01868 Rab11_like Rab11-like. 99.7 9.5E-16 2.1E-20 136.1 11.8 156 20-248 4-165 (165)
362 COG4161 ArtP ABC-type arginine 99.6 2.4E-16 5.2E-21 137.5 7.5 179 3-249 15-214 (242)
363 TIGR00956 3a01205 Pleiotropic 99.6 4.7E-16 1E-20 179.5 12.2 172 3-232 74-270 (1394)
364 PRK11147 ABC transporter ATPas 99.6 9.4E-16 2E-20 165.1 13.7 46 3-51 16-61 (635)
365 KOG0095|consensus 99.6 2.2E-16 4.7E-21 135.0 6.5 161 21-250 9-171 (213)
366 cd04122 Rab14 Rab14 subfamily. 99.6 1.1E-15 2.4E-20 136.2 11.4 159 20-249 3-165 (166)
367 cd01875 RhoG RhoG subfamily. 99.6 1.4E-15 3.1E-20 139.4 12.5 159 20-249 4-178 (191)
368 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 1.6E-15 3.4E-20 140.1 12.5 163 21-249 2-169 (201)
369 TIGR00955 3a01204 The Eye Pigm 99.6 1.1E-15 2.4E-20 164.0 13.1 175 2-236 37-230 (617)
370 cd04127 Rab27A Rab27a subfamil 99.6 2.1E-15 4.5E-20 136.0 12.6 159 20-248 5-177 (180)
371 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1.6E-15 3.6E-20 136.6 11.3 157 20-249 3-165 (172)
372 cd04134 Rho3 Rho3 subfamily. 99.6 2.3E-15 4.9E-20 137.7 12.3 166 20-249 1-175 (189)
373 PF00071 Ras: Ras family; Int 99.6 1.5E-15 3.2E-20 134.3 10.6 155 21-248 1-161 (162)
374 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.5E-15 3.4E-20 142.6 11.2 166 20-249 2-177 (222)
375 KOG0056|consensus 99.6 5.4E-16 1.2E-20 155.1 8.2 151 2-158 550-703 (790)
376 KOG0093|consensus 99.6 6.5E-16 1.4E-20 131.8 7.4 159 20-249 22-184 (193)
377 cd04109 Rab28 Rab28 subfamily. 99.6 4.2E-15 9E-20 138.8 13.2 161 21-250 2-168 (215)
378 PLN03071 GTP-binding nuclear p 99.6 2.9E-15 6.3E-20 140.5 12.1 155 20-250 14-174 (219)
379 KOG0079|consensus 99.6 4.7E-16 1E-20 132.8 5.9 174 21-266 10-187 (198)
380 cd04111 Rab39 Rab39 subfamily. 99.6 2.9E-15 6.3E-20 139.7 11.9 177 20-273 3-183 (211)
381 TIGR00956 3a01205 Pleiotropic 99.6 1.6E-15 3.5E-20 175.1 12.0 169 3-232 776-962 (1394)
382 cd01874 Cdc42 Cdc42 subfamily. 99.6 4.6E-15 1E-19 134.1 12.6 163 21-247 3-174 (175)
383 cd04119 RJL RJL (RabJ-Like) su 99.6 4E-15 8.7E-20 131.6 11.9 162 21-248 2-167 (168)
384 COG1101 PhnK ABC-type uncharac 99.6 3.5E-15 7.6E-20 136.0 11.2 176 3-242 19-215 (263)
385 cd04132 Rho4_like Rho4-like su 99.6 5.1E-15 1.1E-19 134.5 12.3 162 21-250 2-169 (187)
386 cd04106 Rab23_lke Rab23-like s 99.6 6.8E-15 1.5E-19 129.9 12.4 155 21-245 2-160 (162)
387 PLN03140 ABC transporter G fam 99.6 1E-15 2.2E-20 176.6 8.9 182 3-236 178-401 (1470)
388 PLN03110 Rab GTPase; Provision 99.6 7.6E-15 1.6E-19 137.3 12.6 160 20-250 13-176 (216)
389 cd01865 Rab3 Rab3 subfamily. 99.6 1E-14 2.2E-19 129.9 12.7 155 21-248 3-163 (165)
390 KOG0394|consensus 99.6 3.6E-15 7.7E-20 132.1 9.1 167 20-251 10-181 (210)
391 smart00175 RAB Rab subfamily o 99.6 7.5E-15 1.6E-19 129.6 11.3 157 21-248 2-162 (164)
392 COG4107 PhnK ABC-type phosphon 99.6 5.2E-15 1.1E-19 130.7 10.0 190 5-249 21-224 (258)
393 cd04124 RabL2 RabL2 subfamily. 99.6 9.9E-15 2.2E-19 129.7 12.1 154 21-249 2-159 (161)
394 PLN03140 ABC transporter G fam 99.6 4.4E-15 9.5E-20 171.4 12.4 171 4-233 894-1080(1470)
395 cd01866 Rab2 Rab2 subfamily. 99.6 7.2E-15 1.6E-19 131.4 11.1 157 20-249 5-167 (168)
396 cd01867 Rab8_Rab10_Rab13_like 99.6 6.4E-15 1.4E-19 131.5 10.5 157 20-249 4-166 (167)
397 cd04138 H_N_K_Ras_like H-Ras/N 99.6 6.3E-15 1.4E-19 129.5 10.1 153 21-247 3-161 (162)
398 PLN03073 ABC transporter F fam 99.6 2.1E-15 4.5E-20 163.6 8.4 46 3-51 190-238 (718)
399 smart00174 RHO Rho (Ras homolo 99.6 1.2E-14 2.5E-19 130.2 11.9 165 22-248 1-172 (174)
400 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 8.5E-15 1.8E-19 130.2 10.9 156 20-248 3-164 (166)
401 cd01871 Rac1_like Rac1-like su 99.6 1.2E-14 2.6E-19 131.2 12.0 156 20-246 2-173 (174)
402 TIGR00957 MRP_assoc_pro multi 99.6 7.8E-15 1.7E-19 171.1 13.6 164 3-231 651-821 (1522)
403 cd04118 Rab24 Rab24 subfamily. 99.6 2.3E-14 4.9E-19 131.0 13.9 160 21-250 2-168 (193)
404 cd04112 Rab26 Rab26 subfamily. 99.6 1.1E-14 2.3E-19 133.4 11.6 160 21-251 2-166 (191)
405 cd04126 Rab20 Rab20 subfamily. 99.6 1.5E-14 3.3E-19 135.7 12.8 159 21-252 2-194 (220)
406 COG0488 Uup ATPase components 99.6 6.3E-15 1.4E-19 153.9 11.1 127 3-158 335-468 (530)
407 cd04136 Rap_like Rap-like subf 99.6 6.9E-15 1.5E-19 129.9 9.8 155 20-247 2-162 (163)
408 PTZ00243 ABC transporter; Prov 99.6 1.4E-14 3E-19 168.9 14.9 137 3-158 673-811 (1560)
409 smart00176 RAN Ran (Ras-relate 99.6 8E-15 1.7E-19 135.7 10.4 151 25-249 1-155 (200)
410 TIGR01271 CFTR_protein cystic 99.6 1E-14 2.2E-19 169.7 13.7 45 4-51 440-484 (1490)
411 smart00173 RAS Ras subfamily o 99.6 6.8E-15 1.5E-19 130.4 9.5 154 21-247 2-161 (164)
412 cd00877 Ran Ran (Ras-related n 99.6 1.9E-14 4E-19 128.8 12.4 154 21-250 2-161 (166)
413 cd04116 Rab9 Rab9 subfamily. 99.6 1.7E-14 3.7E-19 128.8 11.9 159 20-246 6-169 (170)
414 cd01864 Rab19 Rab19 subfamily. 99.6 1.2E-14 2.6E-19 129.2 10.7 156 20-246 4-164 (165)
415 cd04125 RabA_like RabA-like su 99.6 2.8E-14 6E-19 130.1 13.2 158 21-249 2-163 (188)
416 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 1.6E-14 3.5E-19 129.9 11.5 161 21-251 2-168 (170)
417 cd04145 M_R_Ras_like M-Ras/R-R 99.6 9.8E-15 2.1E-19 129.0 9.8 154 20-246 3-162 (164)
418 PLN03108 Rab family protein; P 99.6 1.2E-14 2.7E-19 135.2 10.9 159 20-249 7-169 (210)
419 cd04176 Rap2 Rap2 subgroup. T 99.6 1.2E-14 2.5E-19 128.8 10.1 155 20-247 2-162 (163)
420 PTZ00369 Ras-like protein; Pro 99.6 1.5E-14 3.4E-19 132.1 10.8 157 20-249 6-168 (189)
421 PLN03130 ABC transporter C fam 99.6 1.2E-14 2.6E-19 169.8 12.5 135 3-158 630-769 (1622)
422 cd04110 Rab35 Rab35 subfamily. 99.6 2.2E-14 4.8E-19 132.3 11.8 158 20-251 7-170 (199)
423 cd04115 Rab33B_Rab33A Rab33B/R 99.6 2.6E-14 5.7E-19 128.0 11.8 158 20-247 3-168 (170)
424 cd04113 Rab4 Rab4 subfamily. 99.6 2.1E-14 4.6E-19 126.9 10.9 155 21-246 2-160 (161)
425 cd04129 Rho2 Rho2 subfamily. 99.6 3E-14 6.5E-19 130.0 12.2 168 20-250 2-175 (187)
426 cd04130 Wrch_1 Wrch-1 subfamil 99.6 3.3E-14 7.2E-19 127.7 12.3 156 21-244 2-170 (173)
427 PLN03232 ABC transporter C fam 99.6 1.4E-14 3E-19 168.7 12.4 137 3-158 630-769 (1495)
428 cd04175 Rap1 Rap1 subgroup. T 99.6 1.4E-14 3.1E-19 128.5 9.6 155 20-247 2-162 (164)
429 COG4172 ABC-type uncharacteriz 99.6 3.4E-14 7.5E-19 139.8 12.9 185 3-248 23-229 (534)
430 COG1134 TagH ABC-type polysacc 99.5 4.6E-14 1E-18 131.4 12.7 129 3-156 40-174 (249)
431 cd04140 ARHI_like ARHI subfami 99.5 2.4E-14 5.1E-19 127.6 10.5 155 20-245 2-162 (165)
432 COG4778 PhnL ABC-type phosphon 99.5 1.4E-14 3E-19 127.6 8.6 180 4-251 25-226 (235)
433 COG4178 ABC-type uncharacteriz 99.5 5.9E-14 1.3E-18 146.5 14.6 164 3-232 406-574 (604)
434 cd01873 RhoBTB RhoBTB subfamil 99.5 5.4E-14 1.2E-18 129.6 12.7 158 20-245 3-193 (195)
435 cd04103 Centaurin_gamma Centau 99.5 3E-14 6.5E-19 126.8 10.5 149 21-246 2-157 (158)
436 PLN03118 Rab family protein; P 99.5 3.3E-14 7.2E-19 132.2 10.9 160 20-251 15-180 (211)
437 cd01863 Rab18 Rab18 subfamily. 99.5 4.8E-14 1E-18 124.5 11.3 153 21-246 2-160 (161)
438 cd04135 Tc10 TC10 subfamily. 99.5 8.1E-14 1.8E-18 124.8 12.6 166 21-247 2-173 (174)
439 cd03270 ABC_UvrA_I The excisio 99.5 2.2E-14 4.8E-19 135.2 9.3 66 122-232 132-199 (226)
440 cd04144 Ras2 Ras2 subfamily. 99.5 2.6E-14 5.7E-19 130.7 9.4 158 21-249 1-164 (190)
441 COG4615 PvdE ABC-type sideroph 99.5 3.2E-14 6.9E-19 139.6 9.9 165 6-232 339-509 (546)
442 cd01870 RhoA_like RhoA-like su 99.5 9.7E-14 2.1E-18 124.4 12.4 164 20-247 2-174 (175)
443 KOG0061|consensus 99.5 1.3E-13 2.9E-18 147.3 15.5 183 2-243 42-241 (613)
444 KOG0060|consensus 99.5 1E-13 2.3E-18 141.6 13.7 141 3-158 448-599 (659)
445 cd04177 RSR1 RSR1 subgroup. R 99.5 9.4E-14 2E-18 124.1 11.1 156 20-248 2-164 (168)
446 cd04101 RabL4 RabL4 (Rab-like4 99.5 1.6E-13 3.5E-18 121.4 12.5 156 21-247 2-163 (164)
447 cd04123 Rab21 Rab21 subfamily. 99.5 1.4E-13 3E-18 121.0 11.2 156 21-247 2-161 (162)
448 cd04114 Rab30 Rab30 subfamily. 99.5 1.5E-13 3.2E-18 122.3 11.4 157 20-247 8-168 (169)
449 KOG0054|consensus 99.5 1E-13 2.3E-18 155.9 12.5 168 3-229 1153-1331(1381)
450 cd03278 ABC_SMC_barmotin Barmo 99.5 7.8E-14 1.7E-18 128.8 9.3 153 4-231 10-175 (197)
451 cd01862 Rab7 Rab7 subfamily. 99.5 1.7E-13 3.7E-18 122.1 11.1 160 21-249 2-168 (172)
452 KOG0086|consensus 99.5 7.7E-14 1.7E-18 119.9 8.3 158 21-249 11-172 (214)
453 cd04146 RERG_RasL11_like RERG/ 99.5 8.2E-14 1.8E-18 123.9 8.8 155 21-247 1-163 (165)
454 cd04139 RalA_RalB RalA/RalB su 99.5 1.6E-13 3.4E-18 121.0 10.3 155 21-248 2-162 (164)
455 cd00157 Rho Rho (Ras homology) 99.5 2.2E-13 4.7E-18 121.2 11.2 165 21-245 2-170 (171)
456 cd01861 Rab6 Rab6 subfamily. 99.5 2.6E-13 5.7E-18 119.6 11.0 155 21-246 2-160 (161)
457 cd01860 Rab5_related Rab5-rela 99.5 2.7E-13 5.8E-18 119.8 10.7 155 20-247 2-162 (163)
458 KOG0088|consensus 99.5 5.2E-14 1.1E-18 121.6 5.9 160 20-250 14-177 (218)
459 cd04142 RRP22 RRP22 subfamily. 99.5 4.1E-13 9E-18 124.0 11.7 165 21-250 2-176 (198)
460 cd00876 Ras Ras family. The R 99.5 1.4E-13 3.1E-18 120.6 8.2 153 21-246 1-159 (160)
461 cd00154 Rab Rab family. Rab G 99.5 3.4E-13 7.3E-18 117.3 10.2 153 21-244 2-158 (159)
462 COG4136 ABC-type uncharacteriz 99.5 6.2E-13 1.3E-17 115.0 11.5 140 4-158 16-163 (213)
463 COG5265 ATM1 ABC-type transpor 99.5 1.1E-13 2.3E-18 137.0 7.5 149 3-158 276-428 (497)
464 KOG0083|consensus 99.5 1.9E-14 4.2E-19 121.0 1.9 158 24-252 2-164 (192)
465 cd04148 RGK RGK subfamily. Th 99.5 3.9E-13 8.5E-18 126.3 10.9 155 21-249 2-164 (221)
466 KOG1673|consensus 99.4 1.6E-13 3.4E-18 118.4 7.3 182 20-265 21-203 (205)
467 KOG0059|consensus 99.4 1.3E-13 2.9E-18 153.1 8.7 169 5-232 580-758 (885)
468 KOG0081|consensus 99.4 2E-14 4.3E-19 124.3 1.5 161 21-249 11-182 (219)
469 PTZ00132 GTP-binding nuclear p 99.4 8.2E-13 1.8E-17 123.2 11.7 156 20-249 10-169 (215)
470 cd01892 Miro2 Miro2 subfamily. 99.4 8E-13 1.7E-17 118.7 11.2 154 20-248 5-166 (169)
471 cd04158 ARD1 ARD1 subfamily. 99.4 3.9E-13 8.4E-18 120.5 8.0 156 21-250 1-163 (169)
472 cd04154 Arl2 Arl2 subfamily. 99.4 3.3E-13 7.1E-18 121.2 7.5 152 20-245 15-172 (173)
473 cd04160 Arfrp1 Arfrp1 subfamil 99.4 4.1E-13 8.9E-18 119.2 7.7 154 21-246 1-167 (167)
474 KOG0097|consensus 99.4 6.7E-13 1.5E-17 112.7 8.3 159 20-249 12-174 (215)
475 cd00879 Sar1 Sar1 subfamily. 99.4 6.1E-13 1.3E-17 121.1 8.5 164 5-246 9-189 (190)
476 cd04147 Ras_dva Ras-dva subfam 99.4 1E-12 2.2E-17 121.0 10.0 157 21-248 1-163 (198)
477 cd01893 Miro1 Miro1 subfamily. 99.4 2.7E-12 5.8E-17 114.5 12.3 158 21-248 2-164 (166)
478 cd04143 Rhes_like Rhes_like su 99.4 1.5E-12 3.3E-17 124.4 11.2 161 21-246 2-169 (247)
479 KOG0064|consensus 99.4 2.7E-12 5.9E-17 130.0 13.0 137 3-158 495-641 (728)
480 cd03273 ABC_SMC2_euk Eukaryoti 99.4 1.8E-12 4E-17 124.0 11.1 82 122-255 161-246 (251)
481 cd04137 RheB Rheb (Ras Homolog 99.4 1.7E-12 3.8E-17 117.0 10.3 159 20-251 2-166 (180)
482 cd04156 ARLTS1 ARLTS1 subfamil 99.4 8.6E-13 1.9E-17 116.3 7.7 151 21-244 1-158 (160)
483 cd03271 ABC_UvrA_II The excisi 99.4 1.2E-12 2.6E-17 125.7 9.0 33 4-39 9-41 (261)
484 cd03240 ABC_Rad50 The catalyti 99.4 2.8E-12 6E-17 119.1 11.0 158 6-231 13-182 (204)
485 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 1.7E-12 3.6E-17 118.1 9.0 162 20-248 4-170 (183)
486 COG4138 BtuD ABC-type cobalami 99.4 3.6E-13 7.9E-18 119.2 4.3 173 6-236 15-196 (248)
487 cd03272 ABC_SMC3_euk Eukaryoti 99.4 2.2E-12 4.8E-17 122.5 10.1 84 122-257 153-240 (243)
488 cd04149 Arf6 Arf6 subfamily. 99.4 1.9E-12 4.2E-17 116.1 8.8 150 20-244 10-166 (168)
489 cd03279 ABC_sbcCD SbcCD and ot 99.4 1.5E-12 3.2E-17 121.6 8.1 173 7-231 18-192 (213)
490 KOG0927|consensus 99.4 2E-12 4.4E-17 131.4 9.5 151 2-158 87-250 (614)
491 COG1129 MglA ABC-type sugar tr 99.3 6E-12 1.3E-16 129.2 12.1 188 5-249 274-473 (500)
492 cd04102 RabL3 RabL3 (Rab-like3 99.3 1.5E-11 3.3E-16 113.9 13.0 168 21-234 2-176 (202)
493 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 1.3E-12 2.9E-17 116.6 5.5 148 22-245 2-163 (164)
494 KOG0393|consensus 99.3 1.2E-12 2.6E-17 119.2 5.1 174 20-251 5-182 (198)
495 cd04157 Arl6 Arl6 subfamily. 99.3 5.1E-12 1.1E-16 111.3 8.6 152 21-245 1-161 (162)
496 cd04155 Arl3 Arl3 subfamily. 99.3 1E-11 2.3E-16 110.9 10.6 152 20-245 15-172 (173)
497 cd00878 Arf_Arl Arf (ADP-ribos 99.3 4.7E-12 1E-16 111.5 7.9 153 21-245 1-157 (158)
498 KOG2355|consensus 99.3 1.1E-11 2.4E-16 112.4 10.3 45 4-51 28-72 (291)
499 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 6.2E-12 1.3E-16 113.3 8.8 153 20-246 16-174 (174)
500 cd04159 Arl10_like Arl10-like 99.3 3.3E-12 7.1E-17 111.2 6.5 150 22-245 2-158 (159)
No 1
>KOG3905|consensus
Probab=100.00 E-value=1.3e-96 Score=694.56 Aligned_cols=365 Identities=49% Similarity=0.797 Sum_probs=334.0
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCC
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQE 91 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~ 91 (415)
.++.| +.|+|+|+||+||||||..|+|.+.+..|.+++|.|++++++++++..|+++|.++|+.++.+|++|+++..
T Consensus 48 klpsg---k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~at 124 (473)
T KOG3905|consen 48 KLPSG---KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPAT 124 (473)
T ss_pred cCCCC---CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccccc
Confidence 45677 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHH--HHHHhh-------------cccccccchhh
Q psy13975 92 TLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGR--CCKLLT-------------FARLRAHLIEL 156 (415)
Q Consensus 92 ~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~--LArAl~-------------~~~~~~~lde~ 156 (415)
++.++.++++.+|++||.++++|+.|..++.++++++.+...+++.++ +.+.|+ ++|....-
T Consensus 125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~--- 201 (473)
T KOG3905|consen 125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVG--- 201 (473)
T ss_pred CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccccccc---
Confidence 999999999999999999999999999999999999999888877776 888887 23322211
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccH
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNC 236 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~ 236 (415)
..+.+.++|||++++|++|||+|++|||||||++..||++++|.+||||||+++||+||++|||+|||||+|+.+||
T Consensus 202 ---~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNi 278 (473)
T KOG3905|consen 202 ---SSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNI 278 (473)
T ss_pred ---CccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccch
Confidence 11226899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcceeeCCeeEEeCCCCccccccccccccCcCCCCCcccccccCCCCCCCCCCCCccccCcH
Q psy13975 237 DLLYKYLAHRLYGFPFRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPIVRKPISREQDTLVEDE 316 (415)
Q Consensus 237 ~~l~~~l~h~l~~~~f~~~a~v~d~d~i~iP~gwDs~~kI~~l~e~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~d~ 316 (415)
++||+||+||+|||||+.+|.|||+|+||||||||+.+||.||+|||..++++++|+|+|.+|++||.+ ++.||++|||
T Consensus 279 dllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD~eKKI~Il~En~~~vkaed~y~d~itkpp~Rk~v-~ekei~aEdd 357 (473)
T KOG3905|consen 279 DLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWDNEKKIDILHENFPTVKAEDNYEDIITKPPVRKVV-HEKEIEAEDD 357 (473)
T ss_pred HHHHHHHHHHhcCcccCCcceEeecceeEeccCCCccccchhhhhcCCCCCccccccccccCCcchhhh-hhhhhhcchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999976 7889999999
Q ss_pred HHHHHHHHHHHhcCCCCCCC-CCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCCCCCCccCCCCCCCCCCCCCchHHH
Q psy13975 317 QSFLARQLALLQQNPAANPT-TRQDNSLPQIRTPVGVQKTGDRRLSNSPAMQGGGANSPKKMIDPTKVGATTPGGEGVLA 395 (415)
Q Consensus 317 q~fl~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 395 (415)
|+||+|||++|+++| +|++ ++.++ +.|.|.++|||++|..++ ||. ||. || ++|||||
T Consensus 358 QaFL~k~q~iLak~~-~t~a~rp~~s---q~~~~~ksprtpg~~g~s-----SP~----k~~-~P--------~segVla 415 (473)
T KOG3905|consen 358 QAFLMKLQSILAKQP-TTAAPRPRTS---QERGPDKSPRTPGRSGSS-----SPL----KKS-DP--------TSEGVLA 415 (473)
T ss_pred HHHHHHHHHHHhcCC-CCCCCCcccc---cCCCCCCCCCCCCCCCCC-----CCC----CCC-CC--------chhHHHH
Confidence 999999999999999 6666 44444 789999999999988764 322 333 44 5799999
Q ss_pred HHHHhhhccCCCC
Q psy13975 396 SFFNSLLLKKTAQ 408 (415)
Q Consensus 396 ~ff~~l~~k~~~~ 408 (415)
|||||||+||+|+
T Consensus 416 sffnsll~kktgs 428 (473)
T KOG3905|consen 416 SFFNSLLSKKTGS 428 (473)
T ss_pred HHHHHHhhcccCC
Confidence 9999999999996
No 2
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=100.00 E-value=1.4e-86 Score=678.28 Aligned_cols=381 Identities=48% Similarity=0.791 Sum_probs=337.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchhh
Q psy13975 19 IGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTMV 98 (415)
Q Consensus 19 ~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v 98 (415)
++.|+|+|+.|+||||||.+|.|.+.+..|.+++|.|.++.+.+.++..|+++|.++|.+.+..|+++++++.+++++.+
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~v 104 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLV 104 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEE
Confidence 39999999999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHH--HHHHhhccc--cccc----chh--hhhhccccCcccc
Q psy13975 99 MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGR--CCKLLTFAR--LRAH----LIE--LLSFYLFYSSVSV 168 (415)
Q Consensus 99 ~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~--LArAl~~~~--~~~~----lde--~~s~~~~~~~~~l 168 (415)
++++||++||.+++.|+.|...+++++++|.++..+++.+. +.+.|+... .... ... ........+.+.+
T Consensus 105 vIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~l 184 (472)
T PF05783_consen 105 VIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLL 184 (472)
T ss_pred EEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccC
Confidence 99999999999999999999999999999977777766665 777776221 1100 000 0000011256789
Q ss_pred CCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 169 IPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 169 pL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
||++|+|++|||+||+|||+|+|.+..||++++|+++|||||+|+||+||++|||+|||||+|++.|+++||+||.|++|
T Consensus 185 pl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 185 PLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred CCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeCCeeEEeCCCCccccccccccccCcCCCCCcccccccCCCCCCCC-CCCCccccCcHHHHHHHHHHHH
Q psy13975 249 GFPFRTSALIVEKDAVLIPSGWDNMKKIGILYENMQSIKPDDYYTDVITKPIVRKPI-SREQDTLVEDEQSFLARQLALL 327 (415)
Q Consensus 249 ~~~f~~~a~v~d~d~i~iP~gwDs~~kI~~l~e~~~~~~~~~~~~~~i~~p~~~~~~-~~~~~~~~~d~q~fl~~~~~~l 327 (415)
+++|+.+++++|+|+||||+|||||+||+||+|+|+++.++++||++|.+|+.++.. .++.+++|||||+||+||+++|
T Consensus 265 ~~~f~~~~~vv~~d~ifIP~GwDs~~kI~il~e~f~~~~~~~~~~~~i~~p~~~~~~~~~e~~~~aedeQ~fL~~~~~~L 344 (472)
T PF05783_consen 265 GFPFKTPAQVVERDAIFIPAGWDSWGKIRILRENFDTEKPEDPYEDIIPKPPVRKFVHEKEIEVEAEDEQEFLMKQQSLL 344 (472)
T ss_pred cCCCCCCceeecccccccCCCCCCHHhcCccccccccccCCCcccccccCCCcccccccccchhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998865 2345569999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCCCCCCCCCccCCCCCCCCCCCCCchHHHHHHHhhhccCCC
Q psy13975 328 QQNPAANPTTRQDNSLPQIRTPVGVQKTGDRRLSNSPAMQGGGANSPKKMIDPTKVGATTPGGEGVLASFFNSLLLKKTA 407 (415)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ff~~l~~k~~~ 407 (415)
++.+ +++.++ ++ +.|+++|++++++++.+.++++++|.. ++||+ ||++++++ +|||||||||||||+||++
T Consensus 345 ~~~~-~~~~r~-~s---~~r~~sgSp~t~~~s~~~~~~s~~~~~-~~kk~-d~~~~~~~--~segVLAnFFNSLLsKks~ 415 (472)
T PF05783_consen 345 SKAP-PAPGRG-ES---PPRSQSGSPRTPGKSSPANVGSASPQS-SSKKP-DPNVKGGS--PSEGVLANFFNSLLSKKSG 415 (472)
T ss_pred hccc-ccccCC-CC---CCCCccccccccCCCCCCCccccCccc-cccCC-CCCCCCCc--cchHHHHHHHHHHhcCCCC
Confidence 9988 444443 33 789999999999999999999988884 57888 99987664 6799999999999999995
Q ss_pred C
Q psy13975 408 Q 408 (415)
Q Consensus 408 ~ 408 (415)
+
T Consensus 416 S 416 (472)
T PF05783_consen 416 S 416 (472)
T ss_pred C
Confidence 4
No 3
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=7.6e-25 Score=207.32 Aligned_cols=175 Identities=18% Similarity=0.168 Sum_probs=122.5
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAH 80 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~ 80 (415)
++++|+|+||+|++| ++++|+|||||||||||++|+|+.+|.+|.++ +++.++....... ..++++..+....
T Consensus 14 ~~~il~~ls~~i~~G---~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~-l~g~~i~~~~~kelAk~ia~vpQ~~~~-- 87 (258)
T COG1120 14 GKPILDDLSFSIPKG---EITGILGPNGSGKSTLLKCLAGLLKPKSGEVL-LDGKDIASLSPKELAKKLAYVPQSPSA-- 87 (258)
T ss_pred CeeEEecceEEecCC---cEEEEECCCCCCHHHHHHHHhccCCCCCCEEE-ECCCchhhcCHHHHhhhEEEeccCCCC--
Confidence 467999999999999 99999999999999999999999999999977 6677776654443 3455555332211
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcCC-ch----------------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMTT-PW----------------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~~-p~----------------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
.....|...+.+.+ |+ ..++.++. .+..++.+..| |||||||+.||||
T Consensus 88 ------------~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~-~~la~r~~~~L--SGGerQrv~iArA 152 (258)
T COG1120 88 ------------PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGL-EHLADRPVDEL--SGGERQRVLIARA 152 (258)
T ss_pred ------------CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCc-HHHhcCccccc--ChhHHHHHHHHHH
Confidence 11112222222222 11 12333333 24445555555 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+.|++..+++|||++ .+|-.+.-.+++.+|+++.++|.
T Consensus 153 LaQ~~~iLLLDEPTs------------------------------------------~LDi~~Q~evl~ll~~l~~~~~~ 190 (258)
T COG1120 153 LAQETPILLLDEPTS------------------------------------------HLDIAHQIEVLELLRDLNREKGL 190 (258)
T ss_pred HhcCCCEEEeCCCcc------------------------------------------ccCHHHHHHHHHHHHHHHHhcCC
Confidence 999999888888755 34445667788889999999999
Q ss_pred eEEEeccCCcccHHHHHHHH
Q psy13975 224 GLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 224 sli~tS~k~~~n~~~l~~~l 243 (415)
+++++.| .++...+|.
T Consensus 191 tvv~vlH----DlN~A~rya 206 (258)
T COG1120 191 TVVMVLH----DLNLAARYA 206 (258)
T ss_pred EEEEEec----CHHHHHHhC
Confidence 9999984 444444444
No 4
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4e-24 Score=196.70 Aligned_cols=194 Identities=15% Similarity=0.175 Sum_probs=133.4
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc----cccceEEEEEecCc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR----EDHTRLGVWILDGE 77 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~----~~~~~l~i~~l~g~ 77 (415)
++.+|++|||+|++| |.++|||++|||||||||+|.|+.+|+.|+++ +.+.++..... .-+.++++.++...
T Consensus 16 ~~~aL~~Vnl~I~~G---E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~-~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 16 GHQALKDVNLEINQG---EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL-FNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CceeeeeEeEEeCCC---cEEEEECCCCCcHHHHHHHHhcccCCCcceEE-ecccchhccchHHHHHHHHhceeEeccCC
Confidence 467899999999999 99999999999999999999999999999976 44544443322 22456777665543
Q ss_pred cc-chhhhhhccC-CCCCCchhhHHHHhcC-C-----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 78 PA-HSNLLRFALN-QETLPHTMVMLVVSMT-T-----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 78 ~~-~~~Ll~~~l~-~~~~~~~~v~~~~d~~-~-----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.. ....+.+++. ...+..+ +.-.+.+- . ....++.++. .+.+....+.| ||||+|||+|||||.|++.
T Consensus 92 Lv~r~sv~~NVl~grl~~~s~-~~slfglfsk~dk~~Al~aLervgi-~~~A~qra~~L--SGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYTST-WRSLFGLFSKEDKAQALDALERVGI-LDKAYQRASTL--SGGQQQRVAIARALVQQPK 167 (258)
T ss_pred cccccHHHHHHHhhhcccchH-HHHHhCCCCHHHHHHHHHHHHHcCc-HHHHHHHhccC--CcchhHHHHHHHHHhcCCC
Confidence 21 1111222221 1111111 11111111 1 1122333333 34445556666 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.++.|||.+ .+|++....++..|+++|.+.|++++.+.
T Consensus 168 iILADEPva------------------------------------------sLDp~~a~~Vm~~l~~in~~~g~Tvi~nL 205 (258)
T COG3638 168 IILADEPVA------------------------------------------SLDPESAKKVMDILKDINQEDGITVIVNL 205 (258)
T ss_pred EEecCCccc------------------------------------------ccChhhHHHHHHHHHHHHHHcCCEEEEEe
Confidence 877777643 55667788899999999999999999988
Q ss_pred cCCcccHHHHHHHHHHHHhCC
Q psy13975 230 AKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 230 ~k~~~n~~~l~~~l~h~l~~~ 250 (415)
|.++..++|. .|+++.
T Consensus 206 ----H~vdlA~~Y~-~Riigl 221 (258)
T COG3638 206 ----HQVDLAKKYA-DRIIGL 221 (258)
T ss_pred ----chHHHHHHHH-hhheEe
Confidence 7899999998 788875
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=9.9e-25 Score=198.34 Aligned_cols=166 Identities=17% Similarity=0.214 Sum_probs=122.3
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC--ccccceEEEEEecCccc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY--REDHTRLGVWILDGEPA 79 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~--~~~~~~l~i~~l~g~~~ 79 (415)
++.||++||++|.+| +.++|+||+|||||||||+|.+++.|++|.+. +++.++.... ..-+.++|++++.-+
T Consensus 14 ~~~VLkgi~l~v~~G---evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~-i~g~~~~~~~~~~~~R~~vGmVFQ~fn-- 87 (240)
T COG1126 14 DKEVLKGISLSVEKG---EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT-VDGEDVGDKKDILKLRRKVGMVFQQFN-- 87 (240)
T ss_pred CeEEecCcceeEcCC---CEEEEECCCCCCHHHHHHHHHCCcCCCCceEE-ECCEeccchhhHHHHHHhcCeeccccc--
Confidence 457999999999999 99999999999999999999999999999976 5554443211 122455666654321
Q ss_pred chhhhhhccCCCCCCchhhHHHHh--------cCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhh
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVS--------MTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d--------~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~ 145 (415)
.+++.+++.++- +.+ ...+++.+++ .+..+.++.+| ||||||||+|||||+
T Consensus 88 ------------LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL-~~ka~~yP~qL--SGGQqQRVAIARALa 152 (240)
T COG1126 88 ------------LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGL-ADKADAYPAQL--SGGQQQRVAIARALA 152 (240)
T ss_pred ------------ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCc-hhhhhhCcccc--CcHHHHHHHHHHHHc
Confidence 234444333221 111 1134555566 36777888888 999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.+|...++|||+| .+|+|...-++..++.+|. .|.+.
T Consensus 153 M~P~vmLFDEPTS------------------------------------------ALDPElv~EVL~vm~~LA~-eGmTM 189 (240)
T COG1126 153 MDPKVMLFDEPTS------------------------------------------ALDPELVGEVLDVMKDLAE-EGMTM 189 (240)
T ss_pred CCCCEEeecCCcc------------------------------------------cCCHHHHHHHHHHHHHHHH-cCCeE
Confidence 8887777777654 5667888889999999986 59999
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+.++|-
T Consensus 190 ivVTHE 195 (240)
T COG1126 190 IIVTHE 195 (240)
T ss_pred EEEech
Confidence 998854
No 6
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=4e-23 Score=191.22 Aligned_cols=184 Identities=16% Similarity=0.153 Sum_probs=128.4
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCcccch
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEPAHS 81 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~~~ 81 (415)
.+|++|||+|.+| ++++|+|++|||||||.++|.|+.+|+.|.+. +.+.......+.. ...+++++++....
T Consensus 21 ~~l~~VS~~i~~G---e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~-~~G~~~~~~~~~~~~~~~VQmVFQDp~~S-- 94 (252)
T COG1124 21 HALNNVSLEIERG---ETLGIVGESGSGKSTLARLLAGLEKPSSGSIL-LDGKPLAPKKRAKAFYRPVQMVFQDPYSS-- 94 (252)
T ss_pred hhhcceeEEecCC---CEEEEEcCCCCCHHHHHHHHhcccCCCCceEE-ECCcccCccccchhhccceeEEecCCccc--
Confidence 5899999999999 99999999999999999999999999999976 5554333222111 23345555443222
Q ss_pred hhhhhccCCC-CCCchhhHHHHhc---C----CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQE-TLPHTMVMLVVSM---T----TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~-~~~~~~v~~~~d~---~----~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
| +|. ++.. .+...+.. . +.+.+++.++.-.+++++++.+| ||||+||++||||+.-+|..+++
T Consensus 95 -L-----nP~~tv~~-~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eL--SGGQ~QRiaIARAL~~~PklLIl 165 (252)
T COG1124 95 -L-----NPRRTVGR-ILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHEL--SGGQRQRIAIARALIPEPKLLIL 165 (252)
T ss_pred -c-----CcchhHHH-HHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhc--ChhHHHHHHHHHHhccCCCEEEe
Confidence 2 111 1111 01111110 0 03455666666556778888887 99999999999999999998888
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCc
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKED 233 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~ 233 (415)
||++|+ +|.--...|+..|.+++.++|.+++|+|
T Consensus 166 DEptSa------------------------------------------LD~siQa~IlnlL~~l~~~~~lt~l~Is---- 199 (252)
T COG1124 166 DEPTSA------------------------------------------LDVSVQAQILNLLLELKKERGLTYLFIS---- 199 (252)
T ss_pred cCchhh------------------------------------------hcHHHHHHHHHHHHHHHHhcCceEEEEe----
Confidence 987652 2333466788999999999999999999
Q ss_pred ccHHHHHHHHHHHHhC
Q psy13975 234 KNCDLLYKYLAHRLYG 249 (415)
Q Consensus 234 ~n~~~l~~~l~h~l~~ 249 (415)
+++..+ .|+.+|+.-
T Consensus 200 Hdl~~v-~~~cdRi~V 214 (252)
T COG1124 200 HDLALV-EHMCDRIAV 214 (252)
T ss_pred CcHHHH-HHHhhheee
Confidence 565444 456566654
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=195.93 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=124.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
..+|+|+||+|.+| ++++||||+|||||||+++|+|+++|+.|.+. +.+..+ ......+++.++.... .+.
T Consensus 16 ~~vl~~i~L~v~~G---EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~-~~g~~v----~~p~~~~~~vFQ~~~LlPW~ 87 (248)
T COG1116 16 VEVLEDINLSVEKG---EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL-LDGRPV----TGPGPDIGYVFQEDALLPWL 87 (248)
T ss_pred eEEeccceeEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCccc----CCCCCCEEEEeccCcccchh
Confidence 46899999999999 99999999999999999999999999999966 444333 2233455666554321 111
Q ss_pred hhhhhccCCCCCCchhhHHHHhc---CC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSM---TT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~---~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
..++++ .+.++. .. ...+++.+++ ....++++.+| |||||||++||||+..+|..++
T Consensus 88 Tv~~NV-----------~l~l~~~~~~~~e~~~~a~~~L~~VgL-~~~~~~~P~qL--SGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 88 TVLDNV-----------ALGLELRGKSKAEARERAKELLELVGL-AGFEDKYPHQL--SGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred hHHhhh-----------eehhhccccchHhHHHHHHHHHHHcCC-cchhhcCcccc--ChHHHHHHHHHHHHhcCCCEEE
Confidence 111111 111111 11 1123444444 34556677777 9999999999999998888888
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+|||.+ .+|..-+..+++.+..++.+++.+++++|
T Consensus 154 lDEPFg------------------------------------------ALDalTR~~lq~~l~~lw~~~~~TvllVT--- 188 (248)
T COG1116 154 LDEPFG------------------------------------------ALDALTREELQDELLRLWEETRKTVLLVT--- 188 (248)
T ss_pred EcCCcc------------------------------------------hhhHHHHHHHHHHHHHHHHhhCCEEEEEe---
Confidence 888644 33444567788889999999999999999
Q ss_pred cccHHHHHHHHHHHHhCC
Q psy13975 233 DKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 233 ~~n~~~l~~~l~h~l~~~ 250 (415)
|++++.. |+.+|++-+
T Consensus 189 -Hdi~EAv-~LsdRivvl 204 (248)
T COG1116 189 -HDVDEAV-YLADRVVVL 204 (248)
T ss_pred -CCHHHHH-hhhCEEEEe
Confidence 5665554 466666654
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.9e-23 Score=203.61 Aligned_cols=164 Identities=19% Similarity=0.210 Sum_probs=121.1
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
+|+++||+|..| +.++|+||||||||||||+|+|++.|++|.++ +++.++.+.... ...++++++..
T Consensus 18 ~l~~i~l~i~~G---ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~-i~g~~vt~l~P~-~R~iamVFQ~y-------- 84 (338)
T COG3839 18 VLKDVNLDIEDG---EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL-IDGRDVTDLPPE-KRGIAMVFQNY-------- 84 (338)
T ss_pred eeecceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEECCCCChh-HCCEEEEeCCc--------
Confidence 899999999999 99999999999999999999999999999977 788888765443 34455554432
Q ss_pred hhccCCCCCCchhhHHHHhcCCc----------h---hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 85 RFALNQETLPHTMVMLVVSMTTP----------W---NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d~~~p----------~---~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
..|++++|..++.+.-. | ...+.++. .+.+++.+.+| ||||||||+||||+..+|...
T Consensus 85 ------ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l-~~lL~r~P~~L--SGGQrQRVAlaRAlVr~P~v~ 155 (338)
T COG3839 85 ------ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGL-EHLLNRKPLQL--SGGQRQRVALARALVRKPKVF 155 (338)
T ss_pred ------cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCC-hhHHhcCcccC--ChhhHHHHHHHHHHhcCCCEE
Confidence 13555555544332210 1 22333344 35666667666 999999999999999888888
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++|||.| .+|..-+..+...++++-.+.|++.+|+||-
T Consensus 156 L~DEPlS------------------------------------------nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD 193 (338)
T COG3839 156 LLDEPLS------------------------------------------NLDAKLRVLMRSEIKKLHERLGTTTIYVTHD 193 (338)
T ss_pred EecCchh------------------------------------------HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 8888743 2333445566667888888899999999965
Q ss_pred C
Q psy13975 232 E 232 (415)
Q Consensus 232 ~ 232 (415)
.
T Consensus 194 q 194 (338)
T COG3839 194 Q 194 (338)
T ss_pred H
Confidence 4
No 9
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=2.9e-23 Score=192.94 Aligned_cols=165 Identities=17% Similarity=0.177 Sum_probs=117.5
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-----cceEEEEEecCcc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-----HTRLGVWILDGEP 78 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-----~~~l~i~~l~g~~ 78 (415)
.+|+++||+|++| +.++|+||+||||||||++|.|+..|++|.+. +.+.++....... +.++++.++...
T Consensus 19 ~~L~~v~l~i~~G---e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~-i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n- 93 (226)
T COG1136 19 EALKDVNLEIEAG---EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL-INGKDLTKLSEKELAKLRRKKIGFVFQNFN- 93 (226)
T ss_pred EecccceEEEcCC---CEEEEECCCCCCHHHHHHHHhcccCCCCceEE-ECCEEcCcCCHHHHHHHHHHhEEEECccCC-
Confidence 5899999999999 99999999999999999999999999999966 6667776544322 234566544321
Q ss_pred cchhhhhhccCCCCCCchhhHHHHh----cCC---------chhHHHHHHhHHHHHH-HHHhhhcCChhhHHHHHHHHHh
Q psy13975 79 AHSNLLRFALNQETLPHTMVMLVVS----MTT---------PWNIIDELHNWASVLQ-DHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 79 ~~~~Ll~~~l~~~~~~~~~v~~~~d----~~~---------p~~~l~~l~~w~~~l~-~~~~~L~lSgGekQRl~LArAl 144 (415)
| ++..++..++. +.. ...+++.++.. +... +.+.+| ||||||||+||||+
T Consensus 94 ----L---------l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~-~~~~~~~p~eL--SGGqqQRVAIARAL 157 (226)
T COG1136 94 ----L---------LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLE-DRLLKKKPSEL--SGGQQQRVAIARAL 157 (226)
T ss_pred ----C---------CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCCh-hhhccCCchhc--CHHHHHHHHHHHHH
Confidence 1 22333332222 111 01222333332 2333 446666 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..+|..++.||| +..+|.+.-+.|+..+++++.++|.+
T Consensus 158 ~~~P~iilADEP------------------------------------------TgnLD~~t~~~V~~ll~~~~~~~g~t 195 (226)
T COG1136 158 INNPKIILADEP------------------------------------------TGNLDSKTAKEVLELLRELNKERGKT 195 (226)
T ss_pred hcCCCeEEeeCc------------------------------------------cccCChHHHHHHHHHHHHHHHhcCCE
Confidence 966666665654 45667788889999999999999999
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||-
T Consensus 196 ii~VTHd 202 (226)
T COG1136 196 IIMVTHD 202 (226)
T ss_pred EEEEcCC
Confidence 9999964
No 10
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.6e-23 Score=195.95 Aligned_cols=172 Identities=17% Similarity=0.159 Sum_probs=122.6
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
++|+||||+|++| ++++|+||||||||||++.|.|+.+|.+|++..+ +..+.. .....+++|+ ++...+..
T Consensus 18 ~vl~~i~l~v~~G---~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~-g~~~~~--~~~~~~IgYV--PQ~~~~d~- 88 (254)
T COG1121 18 PVLEDISLSVEKG---EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF-GKPVRK--RRKRLRIGYV--PQKSSVDR- 88 (254)
T ss_pred eeeeccEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEc-cccccc--cccCCeEEEc--CcccccCC-
Confidence 6999999999999 9999999999999999999999999999997633 222221 1123455554 33221110
Q ss_pred hhhccCCCCCCchhhHHHHhcCC-----------------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc
Q psy13975 84 LRFALNQETLPHTMVMLVVSMTT-----------------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~d~~~-----------------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~ 146 (415)
. ...+|..++.+.+ ....++.++.| +..++.+.+| ||||+||+.|||||.+
T Consensus 89 --------~-fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~L--SGGQ~QRV~lARAL~~ 156 (254)
T COG1121 89 --------S-FPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGEL--SGGQKQRVLLARALAQ 156 (254)
T ss_pred --------C-CCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCccccc--CcHHHHHHHHHHHhcc
Confidence 0 1112222222221 12345555664 5666677766 9999999999999998
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
++..+++||| ..++|..-...|++.|.++..+ |.+++
T Consensus 157 ~p~lllLDEP------------------------------------------~~gvD~~~~~~i~~lL~~l~~e-g~tIl 193 (254)
T COG1121 157 NPDLLLLDEP------------------------------------------FTGVDVAGQKEIYDLLKELRQE-GKTVL 193 (254)
T ss_pred CCCEEEecCC------------------------------------------cccCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence 8888877775 3467777788899999999888 99999
Q ss_pred EeccCCcccHHHHHHHH
Q psy13975 227 YTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 227 ~tS~k~~~n~~~l~~~l 243 (415)
.+| +++..+.+|.
T Consensus 194 ~vt----HDL~~v~~~~ 206 (254)
T COG1121 194 MVT----HDLGLVMAYF 206 (254)
T ss_pred EEe----CCcHHhHhhC
Confidence 999 6676666665
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=1.1e-22 Score=200.65 Aligned_cols=169 Identities=17% Similarity=0.198 Sum_probs=125.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
..+|+|+||+|.+| +++.|+|||||||||||++|+|++.|++|.++ +++.++..... ....+++++++..
T Consensus 18 ~~av~~isl~i~~G---ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~-l~G~~i~~lpp-~kR~ig~VFQ~YA----- 87 (352)
T COG3842 18 FTAVDDISLDIKKG---EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL-LDGEDITDVPP-EKRPIGMVFQSYA----- 87 (352)
T ss_pred eeEEecceeeecCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEECCCCCh-hhcccceeecCcc-----
Confidence 57899999999999 99999999999999999999999999999977 77778766432 3456677655432
Q ss_pred hhhhccCCCCCCchhhHHHHhcCC------c--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTT------P--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~------p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
.+++++|..++.+.- + ..+++.++. .+..++.+.+| ||||+|||+|||||..+|
T Consensus 88 ---------LFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L-~~~~~R~p~qL--SGGQqQRVALARAL~~~P 155 (352)
T COG3842 88 ---------LFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGL-EGFADRKPHQL--SGGQQQRVALARALVPEP 155 (352)
T ss_pred ---------cCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCc-hhhhhhChhhh--ChHHHHHHHHHHHhhcCc
Confidence 234444443322211 1 122333333 34556777777 999999999999999888
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++|||.+ .+|..-+..++..++++..+.|.+.+|+
T Consensus 156 ~vLLLDEPlS------------------------------------------aLD~kLR~~mr~Elk~lq~~~giT~i~V 193 (352)
T COG3842 156 KVLLLDEPLS------------------------------------------ALDAKLREQMRKELKELQRELGITFVYV 193 (352)
T ss_pred chhhhcCccc------------------------------------------chhHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 8888888643 3444557777888999999999999999
Q ss_pred ccCCccc
Q psy13975 229 SAKEDKN 235 (415)
Q Consensus 229 S~k~~~n 235 (415)
||-.+.-
T Consensus 194 THDqeEA 200 (352)
T COG3842 194 THDQEEA 200 (352)
T ss_pred ECCHHHH
Confidence 9865443
No 12
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=5.3e-23 Score=190.51 Aligned_cols=181 Identities=16% Similarity=0.147 Sum_probs=133.5
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~~ 82 (415)
.+++||||++.+| ++++||||||||||||+++|+|+++|+.|.++ |.+.++.........+.++.-+.|.. .|..
T Consensus 18 ~Al~~Vsl~v~~G---ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~-~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 18 TAVNDVSLEVRPG---EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI-FRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred EEEeceeEEEcCC---eEEEEECCCCCCceeeeeeecccccCCCceEE-ECCcccCCCCHHHHHhccceeecccccccCC
Confidence 5799999999999 99999999999999999999999999999977 88888877766677888888776644 2333
Q ss_pred hhhhccCCCCCCchhhHHHHhcC-------------Cc------------hhHHHHHHhHHHHHHHHHhhhcCChhhHHH
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT-------------TP------------WNIIDELHNWASVLQDHIDSLNIGAHDYQA 137 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~-------------~p------------~~~l~~l~~w~~~l~~~~~~L~lSgGekQR 137 (415)
| +++.++-.. .. ..+++.+++ .+..++....| |+|+|++
T Consensus 94 l-------------TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL-~~~a~~~A~~L--syG~qR~ 157 (250)
T COG0411 94 L-------------TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL-GELADRPAGNL--SYGQQRR 157 (250)
T ss_pred C-------------cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCC-chhhcchhhcC--ChhHhHH
Confidence 3 222211111 00 112222222 12333444444 9999999
Q ss_pred HHHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHH
Q psy13975 138 GRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKF 217 (415)
Q Consensus 138 l~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l 217 (415)
++||||++.+|..+++|||. .|+..++.+.+...+|++
T Consensus 158 LEIArALa~~P~lLLLDEPa------------------------------------------AGln~~e~~~l~~~i~~i 195 (250)
T COG0411 158 LEIARALATQPKLLLLDEPA------------------------------------------AGLNPEETEELAELIREL 195 (250)
T ss_pred HHHHHHHhcCCCEEEecCcc------------------------------------------CCCCHHHHHHHHHHHHHH
Confidence 99999999888888888763 477788899999999999
Q ss_pred HHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 218 CLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 218 ~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
..+.|.+++.+- |+++.++.+. |+++-..
T Consensus 196 ~~~~g~tillIE----HdM~~Vm~l~-dri~Vl~ 224 (250)
T COG0411 196 RDRGGVTILLIE----HDMKLVMGLA-DRIVVLN 224 (250)
T ss_pred HhcCCcEEEEEE----eccHHHhhhc-cEEEecc
Confidence 988899988874 7777777755 5555443
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.3e-22 Score=189.76 Aligned_cols=169 Identities=12% Similarity=0.095 Sum_probs=118.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc----ccceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE----DHTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~----~~~~l~i~~l~g~~ 78 (415)
..+|+||||+|++| ++++|+|.+|||||||+|+|.+++.|++|.++ +++.++...... .+.++++.++.-..
T Consensus 19 ~~al~~vsL~I~~G---eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~-v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 19 VTALDDVSLEIPKG---EIFGIIGYSGAGKSTLLRLINLLERPTSGSVF-VDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred eeeeccceEEEcCC---cEEEEEcCCCCcHHHHHHHHhccCCCCCceEE-EcCEecccCChHHHHHHHhhccEEeccccc
Confidence 35899999999999 99999999999999999999999999999977 667666554332 24556666543221
Q ss_pred cchhhhhhccCCCCCCchhhHHHHh---cCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 79 AHSNLLRFALNQETLPHTMVMLVVS---MTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 79 ~~~~Ll~~~l~~~~~~~~~v~~~~d---~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
. ...+..+. +..-+. +.+ ...+++.+++ .++.+.++.+| ||||||||+||||++.+|.
T Consensus 95 L---------ssrTV~~N-vA~PLeiag~~k~ei~~RV~elLelVgL-~dk~~~yP~qL--SGGQKQRVaIARALa~~P~ 161 (339)
T COG1135 95 L---------SSRTVFEN-VAFPLELAGVPKAEIKQRVAELLELVGL-SDKADRYPAQL--SGGQKQRVAIARALANNPK 161 (339)
T ss_pred c---------ccchHHhh-hhhhHhhcCCCHHHHHHHHHHHHHHcCC-hhhhccCchhc--CcchhhHHHHHHHHhcCCC
Confidence 1 11111110 000011 111 1133444444 36667788887 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||++| .+|++-.+-|++.|+.+-.+.|.+++.++
T Consensus 162 iLL~DEaTS------------------------------------------ALDP~TT~sIL~LL~~In~~lglTIvlIT 199 (339)
T COG1135 162 ILLCDEATS------------------------------------------ALDPETTQSILELLKDINRELGLTIVLIT 199 (339)
T ss_pred EEEecCccc------------------------------------------cCChHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 777777655 45566777888888888888888888887
Q ss_pred c
Q psy13975 230 A 230 (415)
Q Consensus 230 ~ 230 (415)
|
T Consensus 200 H 200 (339)
T COG1135 200 H 200 (339)
T ss_pred c
Confidence 3
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=2.6e-22 Score=196.09 Aligned_cols=166 Identities=17% Similarity=0.101 Sum_probs=118.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+||||+|++| ++++|+|+|||||||||++|+|+..|++|++. +.+.+........+.++++...... .|..
T Consensus 18 ~~~l~~vs~~i~~G---ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~-i~G~~~~~~~~~~~~~igy~~~~~~-~~~~ 92 (293)
T COG1131 18 KTALDGVSFEVEPG---EIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL-VLGYDVVKEPAKVRRRIGYVPQEPS-LYPE 92 (293)
T ss_pred CEEEeceeEEEcCC---eEEEEECCCCCCHHHHHHHHhCCcCCCceEEE-EcCEeCccCHHHHHhheEEEccCCC-CCcc
Confidence 57999999999999 99999999999999999999999999999976 5555554432233455565533221 2222
Q ss_pred hhhhccCCCCCCchhhHHHHhc----CC---------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM----TT---------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~----~~---------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
| ++...+++ .. ...+++.+++. ...++.+..| |+|||||+.||+||..+|.
T Consensus 93 l-------------T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~l--S~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 93 L-------------TVRENLEFFARLYGLSKEEAEERIEELLELFGLE-DKANKKVRTL--SGGMKQRLSIALALLHDPE 156 (293)
T ss_pred c-------------cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCc-hhhCcchhhc--CHHHHHHHHHHHHHhcCCC
Confidence 2 22211111 11 11344444442 2224456666 9999999999999997776
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|+.-...+.+.||.++.+.|.+++++|
T Consensus 157 lliLDEP------------------------------------------t~GLDp~~~~~~~~~l~~l~~~g~~tvliss 194 (293)
T COG1131 157 LLILDEP------------------------------------------TSGLDPESRREIWELLRELAKEGGVTILLST 194 (293)
T ss_pred EEEECCC------------------------------------------CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 6666664 4688888999999999999998779999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 195 H~ 196 (293)
T COG1131 195 HI 196 (293)
T ss_pred Cc
Confidence 44
No 15
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2e-21 Score=178.67 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=128.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCc-ccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGE-PAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~-~~~~ 81 (415)
..+|++|||++.+| ++++|||+||+||||||+.|+|+.++.+|++. |.+.|+.......+.+.++.++++. ..|.
T Consensus 16 ~~~L~gvsl~v~~G---eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~-~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 16 IQALRGVSLEVERG---EIVALLGRNGAGKTTLLKTIMGLVRPRSGRII-FDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred eeEEeeeeeEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE-ECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 36899999999999 99999999999999999999999999999977 8889998877778889999887753 2343
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC-----C-------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT-----T-------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~-----~-------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.| +|..++.+. . +..+++.+-...+..++....| ||||||.++|||||..+|.
T Consensus 92 ~L-------------TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~L--SGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 92 RL-------------TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTL--SGGEQQMLAIARALMSRPK 156 (237)
T ss_pred hC-------------cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCC--ChHHHHHHHHHHHHhcCCC
Confidence 33 332222211 0 1223333322234444555556 9999999999999999898
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++.+.-.+.|.+.++++..+.|.+++.+-
T Consensus 157 lLLLDEPs------------------------------------------~GLaP~iv~~I~~~i~~l~~~~g~tIlLVE 194 (237)
T COG0410 157 LLLLDEPS------------------------------------------EGLAPKIVEEIFEAIKELRKEGGMTILLVE 194 (237)
T ss_pred EEEecCCc------------------------------------------cCcCHHHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 88888863 355555667778888998877788888773
Q ss_pred cCCcccHHHHHH
Q psy13975 230 AKEDKNCDLLYK 241 (415)
Q Consensus 230 ~k~~~n~~~l~~ 241 (415)
.|+...++
T Consensus 195 ----Qn~~~Al~ 202 (237)
T COG0410 195 ----QNARFALE 202 (237)
T ss_pred ----ccHHHHHH
Confidence 66655554
No 16
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.7e-21 Score=195.18 Aligned_cols=165 Identities=14% Similarity=0.084 Sum_probs=118.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ....+++.+++.. .|
T Consensus 17 ~~~l~~vsl~i~~G---e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~-~~g~~i~~~~~-~~r~ig~v~Q~~~-lf-- 88 (356)
T PRK11650 17 TQVIKGIDLDVADG---EFIVLVGPSGCGKSTLLRMVAGLERITSGEIW-IGGRVVNELEP-ADRDIAMVFQNYA-LY-- 88 (356)
T ss_pred CEEEeeeeEEEcCC---CEEEEECCCCCcHHHHHHHHHCCCCCCceEEE-ECCEECCCCCH-HHCCEEEEeCCcc-cc--
Confidence 46899999999999 99999999999999999999999999999976 66666654322 2245565544321 11
Q ss_pred hhhhccCCCCCCchhhHHHHhc-------C------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM-------T------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~-------~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
++.++..++.+ . +...+++.++.. ..+++.+..| |+||+||++|||||..+|.
T Consensus 89 -----------p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~L--SgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 89 -----------PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPREL--SGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred -----------CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhC--CHHHHHHHHHHHHHhcCCC
Confidence 12222111110 0 011234444442 4556667766 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|....+.+.+.|+++..+.|.+++|+|
T Consensus 155 llLLDEP~------------------------------------------s~LD~~~r~~l~~~l~~l~~~~g~tii~vT 192 (356)
T PRK11650 155 VFLFDEPL------------------------------------------SNLDAKLRVQMRLEIQRLHRRLKTTSLYVT 192 (356)
T ss_pred EEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 88888764 356667788888899999888899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 193 Hd 194 (356)
T PRK11650 193 HD 194 (356)
T ss_pred CC
Confidence 53
No 17
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.87 E-value=1.7e-21 Score=193.96 Aligned_cols=176 Identities=11% Similarity=0.082 Sum_probs=120.8
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc----ccceEEEEEecCccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE----DHTRLGVWILDGEPA 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~----~~~~l~i~~l~g~~~ 79 (415)
.+|+||||+|.+| ++++|+|+||||||||+++|+|+++|++|.+. +.+.++...... .+.++++..+... .
T Consensus 19 ~~L~~vsl~i~~G---ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~-i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~-l 93 (343)
T TIGR02314 19 QALNNVSLHVPAG---QIYGVIGASGAGKSTLIRCVNLLERPTSGSVI-VDGQDLTTLSNSELTKARRQIGMIFQHFN-L 93 (343)
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEECCcCCHHHHHHHhcCEEEEECCcc-c
Confidence 6899999999999 99999999999999999999999999999976 666666543221 1234555543321 1
Q ss_pred chhhhhhccCCCCCCchhhHHHHh---cCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVS---MTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d---~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
+..+ ++.+.. ..... +.. ...+++.++.+ +.+++.+.+| |+|||||++|||||..+|..
T Consensus 94 ~~~~--------tv~eni-~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~L--SgGqkQRV~IARAL~~~P~i 161 (343)
T TIGR02314 94 LSSR--------TVFGNV-ALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNL--SGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cccC--------cHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhC--CHHHHHHHHHHHHHHhCCCE
Confidence 1100 111100 00000 000 11234444442 4456666666 99999999999999988877
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++|||+ .++|.+..+.+++.|++++.+.|.+++++||
T Consensus 162 LLlDEPt------------------------------------------s~LD~~t~~~i~~lL~~l~~~~g~tiiliTH 199 (343)
T TIGR02314 162 LLCDEAT------------------------------------------SALDPATTQSILELLKEINRRLGLTILLITH 199 (343)
T ss_pred EEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 7777763 4677788999999999999888999999994
Q ss_pred CCcccHHHHHHH
Q psy13975 231 KEDKNCDLLYKY 242 (415)
Q Consensus 231 k~~~n~~~l~~~ 242 (415)
.++.+.++
T Consensus 200 ----~~~~v~~~ 207 (343)
T TIGR02314 200 ----EMDVVKRI 207 (343)
T ss_pred ----CHHHHHHh
Confidence 44444443
No 18
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=5.9e-23 Score=184.37 Aligned_cols=183 Identities=20% Similarity=0.226 Sum_probs=128.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+.|+++|||+|.+| ++|+++|||||||||.+.++.|+..|++|.++ ++..|+.......++|+|+.++++.+ .|.
T Consensus 17 r~Vv~~Vsl~v~~G---EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~-ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 17 RKVVNDVSLEVNSG---EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL-LDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred eeeeeeeeEEEcCC---cEEEEECCCCCCceeEEEEEEEEEecCCceEE-ECCcccccCChHHHhhcCcccccccchHhh
Confidence 57899999999999 99999999999999999999999999999977 77888887777788999999998765 454
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCC--ch---------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTT--PW---------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~--p~---------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
.| +..+. +..++.+.. .+ .+++.++. ....+..... ||||||+|++|||||+.+|..
T Consensus 93 ~L--------tV~dN-i~~vlE~~~~d~~~~~~~~~l~~LL~ef~i-~hlr~~~a~s--LSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 93 KL--------TVEDN-IMAVLEIREKDLKKAERKEELDALLEEFHI-THLRDSKAYS--LSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cC--------cHHHH-HHHHHhhhhcchhHHHHHHHHHHHHHHhch-HHHhcCcccc--cccchHHHHHHHHHHhcCCCE
Confidence 44 11111 111111111 11 12222222 1122222223 399999999999999999999
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++|||.+ ++|+--..-|++.++.+..+ |..++.|-
T Consensus 161 iLLDEPFA------------------------------------------GVDPiaV~dIq~iI~~L~~r-giGvLITD- 196 (243)
T COG1137 161 ILLDEPFA------------------------------------------GVDPIAVIDIQRIIKHLKDR-GIGVLITD- 196 (243)
T ss_pred EEecCCcc------------------------------------------CCCchhHHHHHHHHHHHHhC-CceEEEcc-
Confidence 99898744 44444455677777777654 99999875
Q ss_pred CCcccHHHHHHHHHHHHhC
Q psy13975 231 KEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 231 k~~~n~~~l~~~l~h~l~~ 249 (415)
+|+.+....+ +|.|-
T Consensus 197 ---HNVREtL~i~-dRaYI 211 (243)
T COG1137 197 ---HNVRETLDIC-DRAYI 211 (243)
T ss_pred ---ccHHHHHhhh-heEEE
Confidence 7886665533 55443
No 19
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.7e-21 Score=185.36 Aligned_cols=171 Identities=15% Similarity=0.192 Sum_probs=122.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEecee---ecCCCCccccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYI---NVSDEYREDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~---~v~~~~~~~~~~l~i~~l~g~~~ 79 (415)
..+++||+++|+.| +.++++|||||||||||++|+|++.|+.|.+. +++. |.... .-...++|+.+++..
T Consensus 15 ~~a~~di~l~i~~G---e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~-~~~~~l~D~~~~-~~~~R~VGfvFQ~YA-- 87 (345)
T COG1118 15 FGALDDISLDIKSG---ELVALLGPSGAGKSTLLRIIAGLETPDAGRIR-LNGRVLFDVSNL-AVRDRKVGFVFQHYA-- 87 (345)
T ss_pred ccccccceeeecCC---cEEEEECCCCCcHHHHHHHHhCcCCCCCceEE-ECCEeccchhcc-chhhcceeEEEechh--
Confidence 46789999999999 99999999999999999999999999999976 6655 33221 122456777766532
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcC------Cc---------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMT------TP---------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~------~p---------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
.+++++|..++.+. +| .++++.+++ ....++++.+| ||||+||++||||+
T Consensus 88 ------------LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL-~~la~ryP~QL--SGGQrQRVALARAL 152 (345)
T COG1118 88 ------------LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL-EGLADRYPAQL--SGGQRQRVALARAL 152 (345)
T ss_pred ------------hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcc-cchhhcCchhc--ChHHHHHHHHHHHh
Confidence 13344443322221 11 122333333 34456777777 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
.-.|..+++|||. ..+|..-+..+.++||++-.++|.+
T Consensus 153 A~eP~vLLLDEPf------------------------------------------~ALDa~vr~~lr~wLr~~~~~~~~t 190 (345)
T COG1118 153 AVEPKVLLLDEPF------------------------------------------GALDAKVRKELRRWLRKLHDRLGVT 190 (345)
T ss_pred hcCCCeEeecCCc------------------------------------------hhhhHHHHHHHHHHHHHHHHhhCce
Confidence 9777777777752 3455566778889999999999999
Q ss_pred EEEeccCCcccHHHHHH
Q psy13975 225 LFYTSAKEDKNCDLLYK 241 (415)
Q Consensus 225 li~tS~k~~~n~~~l~~ 241 (415)
.+|+|| +.++.++
T Consensus 191 tvfVTH----D~eea~~ 203 (345)
T COG1118 191 TVFVTH----DQEEALE 203 (345)
T ss_pred EEEEeC----CHHHHHh
Confidence 999994 4455554
No 20
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.5e-21 Score=180.45 Aligned_cols=169 Identities=15% Similarity=0.170 Sum_probs=113.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ...++++ +.+.+. +.
T Consensus 13 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~-~~g~~~~~~~~-~~~~i~~--v~q~~~~~~ 85 (213)
T cd03259 13 VRALDDLSLTVEPG---EFLALLGPSGCGKTTLLRLIAGLERPDSGEIL-IDGRDVTGVPP-ERRNIGM--VFQDYALFP 85 (213)
T ss_pred eeeecceeEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEEcCcCch-hhccEEE--EcCchhhcc
Confidence 46899999999999 99999999999999999999999999999975 55555432211 1223333 333221 11
Q ss_pred hhhhhccCCCCCCchhhHHHHh--cC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVS--MT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d--~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+...+.... +. ....+++.++.. ..+++.+..| |+||+||++||||+..++..+++
T Consensus 86 ~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgG~~qrl~la~al~~~p~~lll 154 (213)
T cd03259 86 HL--------TVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHEL--SGGQQQRVALARALAREPSLLLL 154 (213)
T ss_pred CC--------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 111110000000 00 011233333332 3445555666 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+..+.+.+.|++++.++|.+++++||.
T Consensus 155 DEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 155 DEP------------------------------------------LSALDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred cCC------------------------------------------cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 765 457777888999999999987789999999954
No 21
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.4e-21 Score=183.36 Aligned_cols=172 Identities=13% Similarity=0.074 Sum_probs=111.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc--ccceEEEEEecCcc-c
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE--DHTRLGVWILDGEP-A 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~--~~~~l~i~~l~g~~-~ 79 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++...... ...+..+.++.+.+ .
T Consensus 13 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (235)
T cd03261 13 RTVLKGVDLDVRRG---EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL-IDGEDISGLSEAELYRLRRRMGMLFQSGAL 88 (235)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEccccChhhHHHHhcceEEEccCccc
Confidence 46899999999999 99999999999999999999999999999976 555555332110 11122233333322 1
Q ss_pred chhhhhhccCCCCCCchhhHHHHhc--CCc-------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSM--TTP-------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~--~~p-------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
+..+ .+.+...+..... ... ..+++.++. ...+++.+..| |+||+||++||||+..++..
T Consensus 89 ~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrv~ia~al~~~p~l 157 (235)
T cd03261 89 FDSL--------TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL-RGAEDLYPAEL--SGGMKKRVALARALALDPEL 157 (235)
T ss_pred CCCC--------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCC-chhhcCChhhC--CHHHHHHHHHHHHHhcCCCE
Confidence 1111 1111100000000 001 112233322 12334455555 99999999999999977777
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++||| +.++|.+..+.+.+.|++++.+.|.+++++||
T Consensus 158 lllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH 195 (235)
T cd03261 158 LLYDEP------------------------------------------TAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195 (235)
T ss_pred EEecCC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 777765 35777788999999999998777999999994
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 196 ~ 196 (235)
T cd03261 196 D 196 (235)
T ss_pred C
Confidence 3
No 22
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.86 E-value=2.3e-21 Score=180.09 Aligned_cols=176 Identities=17% Similarity=0.131 Sum_probs=125.8
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAH 80 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~ 80 (415)
++.+++|+||+|++| +.++++|++||||||+|++|.++.+|++|.++ +++.++.+.+.- -+.++||+.+.- ..
T Consensus 13 ~~~av~~v~l~I~~g---ef~vliGpSGsGKTTtLkMINrLiept~G~I~-i~g~~i~~~d~~~LRr~IGYviQqi-gL- 86 (309)
T COG1125 13 NKKAVDDVNLTIEEG---EFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL-IDGEDISDLDPVELRRKIGYVIQQI-GL- 86 (309)
T ss_pred CceeeeeeeEEecCC---eEEEEECCCCCcHHHHHHHHhcccCCCCceEE-ECCeecccCCHHHHHHhhhhhhhhc-cc-
Confidence 357899999999999 99999999999999999999999999999987 667777664432 245666654321 11
Q ss_pred hhhhhhccCCCCCCchhhHHH-------HhcCCc------hhHHHHHHhH-HHHHHHHHhhhcCChhhHHHHHHHHHhhc
Q psy13975 81 SNLLRFALNQETLPHTMVMLV-------VSMTTP------WNIIDELHNW-ASVLQDHIDSLNIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~-------~d~~~p------~~~l~~l~~w-~~~l~~~~~~L~lSgGekQRl~LArAl~~ 146 (415)
+++.++..+ .-|.+. .++++.+++- .+..++++.+| ||||+||+.+|||++-
T Consensus 87 ------------FPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL--SGGQQQRVGv~RALAa 152 (309)
T COG1125 87 ------------FPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL--SGGQQQRVGVARALAA 152 (309)
T ss_pred ------------CCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc--CcchhhHHHHHHHHhc
Confidence 222222211 222221 1334444332 24667778877 9999999999999996
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
.|..++.|||. ..+++-.++.+|+.+.++-.+.|.+++
T Consensus 153 dP~ilLMDEPF------------------------------------------gALDpI~R~~lQ~e~~~lq~~l~kTiv 190 (309)
T COG1125 153 DPPILLMDEPF------------------------------------------GALDPITRKQLQEEIKELQKELGKTIV 190 (309)
T ss_pred CCCeEeecCCc------------------------------------------cccChhhHHHHHHHHHHHHHHhCCEEE
Confidence 66665556643 345556678888889999999999999
Q ss_pred EeccCCcccHHHHHHHH
Q psy13975 227 YTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 227 ~tS~k~~~n~~~l~~~l 243 (415)
|+| +.+++.++..
T Consensus 191 fVT----HDidEA~kLa 203 (309)
T COG1125 191 FVT----HDIDEALKLA 203 (309)
T ss_pred EEe----cCHHHHHhhh
Confidence 999 5666666533
No 23
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.3e-21 Score=180.61 Aligned_cols=170 Identities=19% Similarity=0.150 Sum_probs=113.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........++++. .+... +.
T Consensus 13 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~~--~q~~~~~~ 86 (220)
T cd03265 13 FEAVRGVSFRVRRG---EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT-VAGHDVVREPREVRRRIGIV--FQDLSVDD 86 (220)
T ss_pred EEeeeceeEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEecCcChHHHhhcEEEe--cCCccccc
Confidence 46899999999999 99999999999999999999999999999966 55544432111112234433 33221 11
Q ss_pred hhhhhccCCCCCCchhhHHH-H-hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLV-V-SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~-~-d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ ...+...... . ... ....+++.++. ...+++.+..| |+||+||++||||+..++..+++
T Consensus 87 ~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qr~~la~al~~~p~llll 155 (220)
T cd03265 87 EL--------TGWENLYIHARLYGVPGAERRERIDELLDFVGL-LEAADRLVKTY--SGGMRRRLEIARSLVHRPEVLFL 155 (220)
T ss_pred cC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHhhCChhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 1111100000 0 000 01123333333 23445556666 99999999999999987777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+..+.+.+.|++++.++|.+++++||.
T Consensus 156 DEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~ 191 (220)
T cd03265 156 DEP------------------------------------------TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY 191 (220)
T ss_pred cCC------------------------------------------ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 775 346777888999999999988789999999954
No 24
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.86 E-value=2.4e-21 Score=181.10 Aligned_cols=171 Identities=15% Similarity=0.143 Sum_probs=113.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-----cceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-----HTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-----~~~l~i~~l~g~ 77 (415)
+++|+++||+|++| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... ...+++......
T Consensus 17 ~~il~~~s~~i~~G---~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (218)
T cd03255 17 VQALKGVSLSIEKG---EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR-VDGTDISKLSEKELAAFRRRHIGFVFQSFN 92 (218)
T ss_pred eeEEeeeEEEEcCC---CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEE-ECCEehhhcchhHHHHHHhhcEEEEeeccc
Confidence 46899999999999 99999999999999999999999999999976 6655543322111 123444432211
Q ss_pred ccchhhhhhccCCCCCCchhhHHH-H-hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 78 PAHSNLLRFALNQETLPHTMVMLV-V-SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~~-~-d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.+..+ .+.+...+.. . ... ....+++.++. ...+++.+..| |+||+||++||||+..++.
T Consensus 93 -~~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 93 -LLPDL--------TALENVELPLLLAGVPKKERRERAEELLERVGL-GDRLNHYPSEL--SGGQQQRVAIARALANDPK 160 (218)
T ss_pred -cCCCC--------cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhhhcChhhc--CHHHHHHHHHHHHHccCCC
Confidence 11111 1111000000 0 000 01123333333 13345556666 9999999999999997777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+..+.+.+.|++++.+.|.+++++|
T Consensus 161 lllLDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 198 (218)
T cd03255 161 IILADEP------------------------------------------TGNLDSETGKEVMELLRELNKEAGTTIVVVT 198 (218)
T ss_pred EEEEcCC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 7777765 3567778889999999999876799999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 199 H~ 200 (218)
T cd03255 199 HD 200 (218)
T ss_pred CC
Confidence 54
No 25
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.86 E-value=2.3e-21 Score=190.48 Aligned_cols=169 Identities=17% Similarity=0.125 Sum_probs=114.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.......+.++++. .+.. .+.
T Consensus 6 ~~~l~~vs~~i~~G---e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~i~~~--~q~~~~~~ 79 (302)
T TIGR01188 6 FKAVDGVNFKVREG---EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTAR-VAGYDVVREPRKVRRSIGIV--PQYASVDE 79 (302)
T ss_pred eeEEeeeeEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEcccCHHHHHhhcEEe--cCCCCCCC
Confidence 46899999999999 99999999999999999999999999999976 55555533211112334444 3222 111
Q ss_pred hhhhhccCCCCCCchhhHHH--HhcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLV--VSMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~--~d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ ...+...+.. .... +...+++.++.+ ...++.+..| |+|||||++||||+..++..+++
T Consensus 80 ~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgG~~qrv~la~al~~~p~lllL 148 (302)
T TIGR01188 80 DL--------TGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTY--SGGMRRRLDIAASLIHQPDVLFL 148 (302)
T ss_pred CC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 1111100000 0000 011234444442 3445566666 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+....+.+.|++++.+ |.+++++||.
T Consensus 149 DEP------------------------------------------t~gLD~~~~~~l~~~l~~~~~~-g~tvi~~sH~ 183 (302)
T TIGR01188 149 DEP------------------------------------------TTGLDPRTRRAIWDYIRALKEE-GVTILLTTHY 183 (302)
T ss_pred eCC------------------------------------------CcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCC
Confidence 765 4577788899999999999754 9999999954
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.86 E-value=4.3e-21 Score=171.22 Aligned_cols=169 Identities=12% Similarity=0.139 Sum_probs=116.8
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----cceEEEEEecCc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----HTRLGVWILDGE 77 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~~~l~i~~l~g~ 77 (415)
++++|+||||+|++| +.+.|+|++||||||||++|.+.++|+.|.++ +.+.++......+ +.++|+++++..
T Consensus 14 g~~aL~~vs~~i~~G---ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~-~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 14 GREALRDVSFHIPKG---EFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL-VNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred CchhhhCceEeecCc---eEEEEECCCCCCHHHHHHHHHhhhcCCCceEE-ECCeecccccccccchhhheeeeEeeecc
Confidence 456999999999999 99999999999999999999999999999977 6677776543332 467888877642
Q ss_pred cc-chhhhhhccCCCCCCchhh-HHHHhcCCch-------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 78 PA-HSNLLRFALNQETLPHTMV-MLVVSMTTPW-------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 78 ~~-~~~Ll~~~l~~~~~~~~~v-~~~~d~~~p~-------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
.. ..+. |.+... +.+.-. .+. ..++.+.+ .+..+..+.+| |||||||++||||+..+|
T Consensus 90 LL~~~tv---------yeNVA~pL~v~G~-~~~~i~~rV~~~L~~VgL-~~k~~~lP~~L--SGGEQQRvaIARAiV~~P 156 (223)
T COG2884 90 LLPDRTV---------YENVALPLRVIGK-PPREIRRRVSEVLDLVGL-KHKARALPSQL--SGGEQQRVAIARAIVNQP 156 (223)
T ss_pred ccccchH---------hhhhhhhhhccCC-CHHHHHHHHHHHHHHhcc-chhhhcCcccc--CchHHHHHHHHHHHccCC
Confidence 21 1111 111111 011110 111 12222233 24445556666 999999999999999555
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..++.|| |+..+|++....|++.+.++- +.|.+++..
T Consensus 157 ~vLlADE------------------------------------------PTGNLDp~~s~~im~lfeein-r~GtTVl~A 193 (223)
T COG2884 157 AVLLADE------------------------------------------PTGNLDPDLSWEIMRLFEEIN-RLGTTVLMA 193 (223)
T ss_pred CeEeecC------------------------------------------CCCCCChHHHHHHHHHHHHHh-hcCcEEEEE
Confidence 5555454 456777788888999888884 579999998
Q ss_pred cc
Q psy13975 229 SA 230 (415)
Q Consensus 229 S~ 230 (415)
+|
T Consensus 194 TH 195 (223)
T COG2884 194 TH 195 (223)
T ss_pred ec
Confidence 84
No 27
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=2.4e-21 Score=178.91 Aligned_cols=179 Identities=18% Similarity=0.187 Sum_probs=123.6
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----cceEEEEEecCc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----HTRLGVWILDGE 77 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~~~l~i~~l~g~ 77 (415)
++.|++||||+|++| ++++|+|++|+|||||||.|.|+.+|++|+++ +.+.++.....+. +.++++.++.|.
T Consensus 20 ~~~Ild~v~l~V~~G---ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~-i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 20 DRVILDGVDLDVPRG---EILAILGGSGSGKSTLLRLILGLLRPDKGEIL-IDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CEEEecCceeeecCC---cEEEEECCCCcCHHHHHHHHhccCCCCCCeEE-EcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 457899999999999 99999999999999999999999999999987 5556665544432 457888888775
Q ss_pred ccchhhhhhccCCCCCCchhhHHHHhcC-CchhHHH--------HHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 78 PAHSNLLRFALNQETLPHTMVMLVVSMT-TPWNIID--------ELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~~~d~~-~p~~~l~--------~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
. |.+| ++.+...+-....+ -|...++ .+.+-....+..+.+| ||||++|++||||++.+|
T Consensus 96 L-Fssl--------tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsEL--SGGM~KRvaLARAialdP 164 (263)
T COG1127 96 L-FSSL--------TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL--SGGMRKRVALARAIALDP 164 (263)
T ss_pred c-cccc--------chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhh--cchHHHHHHHHHHHhcCC
Confidence 4 2223 11111100000111 1222222 2233212356677777 999999999999999777
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+.+|||+ .|+|+--...|-+.++++-...|.+++.+
T Consensus 165 ell~~DEPt------------------------------------------sGLDPI~a~~~~~LI~~L~~~lg~T~i~V 202 (263)
T COG1127 165 ELLFLDEPT------------------------------------------SGLDPISAGVIDELIRELNDALGLTVIMV 202 (263)
T ss_pred CEEEecCCC------------------------------------------CCCCcchHHHHHHHHHHHHHhhCCEEEEE
Confidence 666666653 45565666677777888888899999999
Q ss_pred ccCCcccHHHHHH
Q psy13975 229 SAKEDKNCDLLYK 241 (415)
Q Consensus 229 S~k~~~n~~~l~~ 241 (415)
| |+++.++.
T Consensus 203 T----HDl~s~~~ 211 (263)
T COG1127 203 T----HDLDSLLT 211 (263)
T ss_pred E----CChHHHHh
Confidence 9 45544443
No 28
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.86 E-value=4.7e-21 Score=192.02 Aligned_cols=178 Identities=12% Similarity=0.092 Sum_probs=121.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-----cceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-----HTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-----~~~l~i~~l~g~ 77 (415)
+.+|+|+||+|++| ++++|+|+||||||||+++|+|+.+|++|.++ +.+.++....... +..++++.+...
T Consensus 6 ~~~l~~vs~~i~~G---ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~-i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 6 KKGVNDADLAIAKG---EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF-IDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred ceeEEeeEEEEcCC---CEEEEECCCCChHHHHHHHHhCCCCCCceEEE-ECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 46899999999999 99999999999999999999999999999976 6666665432221 234555543321
Q ss_pred ccchhhhhhccCCCCCCchhhHH--HHhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 78 PAHSNLLRFALNQETLPHTMVML--VVSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~--~~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.|..+ ++.+...+. ...+.. ...+++.++. ...+++.+..| |+|||||++|||||..++.
T Consensus 82 -l~~~~--------TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL-~~~~~~~p~~L--SGGq~QRV~lARAL~~~p~ 149 (363)
T TIGR01186 82 -LFPHM--------TILQNTSLGPELLGWPEQERKEKALELLKLVGL-EEYEHRYPDEL--SGGMQQRVGLARALAAEPD 149 (363)
T ss_pred -CCCCC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-chhhhCChhhC--CHHHHHHHHHHHHHhcCCC
Confidence 11111 111110000 000110 1123444444 24456667666 9999999999999998887
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|....+.+++.++.++.+.|.+++++|
T Consensus 150 iLLlDEP~------------------------------------------saLD~~~r~~l~~~l~~l~~~~~~Tii~vT 187 (363)
T TIGR01186 150 ILLMDEAF------------------------------------------SALDPLIRDSMQDELKKLQATLQKTIVFIT 187 (363)
T ss_pred EEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 77777753 466777888999999999888899999999
Q ss_pred cCCcccHHHHHHH
Q psy13975 230 AKEDKNCDLLYKY 242 (415)
Q Consensus 230 ~k~~~n~~~l~~~ 242 (415)
++++.+.++
T Consensus 188 ----Hd~~ea~~~ 196 (363)
T TIGR01186 188 ----HDLDEAIRI 196 (363)
T ss_pred ----CCHHHHHHh
Confidence 555555443
No 29
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.86 E-value=8.4e-21 Score=176.83 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=112.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ...++++ +.+... +.
T Consensus 13 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~-~~g~~~~~~~~-~~~~i~~--~~q~~~~~~ 85 (213)
T cd03301 13 VTALDDLNLDIADG---EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY-IGGRDVTDLPP-KDRDIAM--VFQNYALYP 85 (213)
T ss_pred eeeeeceEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEECCcCCc-ccceEEE--EecChhhcc
Confidence 46899999999999 99999999999999999999999999999966 65555432211 1223333 333221 11
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC-Cc-------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT-TP-------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~-~p-------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+.......... .. ..+++.++. ...+++.+..| |+||+||++||||+..++..+++
T Consensus 86 ~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qr~~laral~~~p~llll 154 (213)
T cd03301 86 HM--------TVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-EHLLDRKPKQL--SGGQRQRVALGRAIVREPKVFLM 154 (213)
T ss_pred CC--------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HHHHhCChhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 11111000000000 01 122333333 13344555555 99999999999999977777776
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+..+.+.+.|++++.++|.+++++||.
T Consensus 155 DEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~ 190 (213)
T cd03301 155 DEP------------------------------------------LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190 (213)
T ss_pred cCC------------------------------------------cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 765 457777888999999999988789999999954
No 30
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=3e-21 Score=178.93 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=111.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.. .....++++........+..
T Consensus 13 ~~~l~~v~~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~--~~~~~~i~~~~q~~~~~~~~ 86 (205)
T cd03226 13 TEILDDLSLDLYAG---EIIALTGKNGAGKTTLAKILAGLIKESSGSIL-LNGKPIKA--KERRKSIGYVMQDVDYQLFT 86 (205)
T ss_pred CceeeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEEhhh--HHhhcceEEEecChhhhhhh
Confidence 46899999999999 99999999999999999999999999999975 55544422 11122344433321101100
Q ss_pred hhhhccCCCCCCchhhHHHHhcC----CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT----TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~----~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
+ .+.+.......... ....+++.++. ...+++.+..| |+||+||++||||+..++..+++|||
T Consensus 87 ~--------tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~laral~~~p~llllDEP-- 153 (205)
T cd03226 87 D--------SVREELLLGLKELDAGNEQAETVLKDLDL-YALKERHPLSL--SGGQKQRLAIAAALLSGKDLLIFDEP-- 153 (205)
T ss_pred c--------cHHHHHhhhhhhcCccHHHHHHHHHHcCC-chhcCCCchhC--CHHHHHHHHHHHHHHhCCCEEEEeCC--
Confidence 0 00000000000001 11123344433 23345555556 99999999999999987777777775
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|+.++. .|.+++++||.
T Consensus 154 ----------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~ 185 (205)
T cd03226 154 ----------------------------------------TSGLDYKNMERVGELIRELAA-QGKAVIVITHD 185 (205)
T ss_pred ----------------------------------------CccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 346777888999999999975 58999999954
No 31
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=6e-21 Score=181.12 Aligned_cols=177 Identities=13% Similarity=0.088 Sum_probs=112.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
.++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ...++++. .+.+. +.
T Consensus 15 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~-~~~~i~~v--~q~~~~~~ 87 (239)
T cd03296 15 FVALDDVSLDIPSG---ELVALLGPSGSGKTTLLRLIAGLERPDSGTIL-FGGEDATDVPV-QERNVGFV--FQHYALFR 87 (239)
T ss_pred EEeeeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEECCcCCc-cccceEEE--ecCCcccC
Confidence 46899999999999 99999999999999999999999999999976 66555432211 12234443 33221 11
Q ss_pred h--hhhhccCCCCCCch-hhHHHHh-cCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 82 N--LLRFALNQETLPHT-MVMLVVS-MTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 82 ~--Ll~~~l~~~~~~~~-~v~~~~d-~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
. +............. ......+ ......+++.++. ....++.+..| |+||+||++||||+..++..+++|||
T Consensus 88 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrl~la~al~~~p~llllDEP- 163 (239)
T cd03296 88 HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-DWLADRYPAQL--SGGQRQRVALARALAVEPKVLLLDEP- 163 (239)
T ss_pred CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCC-hhhhhcChhhC--CHHHHHHHHHHHHHhcCCCEEEEcCC-
Confidence 1 11000000000000 0000000 0000122333333 13345555556 99999999999999977777777765
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++.+.|.+++++||.
T Consensus 164 -----------------------------------------~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 164 -----------------------------------------FGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred -----------------------------------------cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 356777888999999999988779999999954
No 32
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.86 E-value=3.4e-21 Score=179.95 Aligned_cols=169 Identities=12% Similarity=0.145 Sum_probs=111.1
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc----ccceEEEEEecCccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE----DHTRLGVWILDGEPA 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~----~~~~l~i~~l~g~~~ 79 (415)
++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++...... .+..+++...... .
T Consensus 17 ~il~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~~~q~~~-~ 91 (216)
T TIGR00960 17 PALDNLNFHITKG---EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR-FNGQDLTRLRGREIPFLRRHIGMVFQDHR-L 91 (216)
T ss_pred eEEEeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEehhhcChhHHHHHHHhceEEecCcc-c
Confidence 5899999999999 99999999999999999999999999999976 655554322111 1223444332211 1
Q ss_pred chhhhhhccCCCCCCchhhHHH-H-hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLV-V-SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~-~-d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
+..+ .+.+...+.. . ... +...+++.++.. ..+++.+..| |+||+||++||||+..++..+
T Consensus 92 ~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 92 LSDR--------TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQL--SGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred cccc--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhC--CHHHHHHHHHHHHHhcCCCEE
Confidence 1111 1111000000 0 000 011233333331 3345555555 999999999999999877777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 161 llDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~ 197 (216)
T TIGR00960 161 LADEP------------------------------------------TGNLDPELSRDIMRLFEEFNR-RGTTVLVATHD 197 (216)
T ss_pred EEeCC------------------------------------------CCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 77775 346777888899999999975 48999999954
No 33
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.86 E-value=5e-21 Score=191.67 Aligned_cols=165 Identities=14% Similarity=0.117 Sum_probs=116.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|.+| ++++|+|+|||||||||++|+|+++|+.|.+. +++.++..... ....+++.+++.. .
T Consensus 17 ~~~l~~vs~~i~~G---e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~-i~g~~~~~~~~-~~r~ig~v~Q~~~-l--- 87 (353)
T TIGR03265 17 FTALKDISLSVKKG---EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY-QGGRDITRLPP-QKRDYGIVFQSYA-L--- 87 (353)
T ss_pred eEEEEeeEEEEcCC---CEEEEECCCCCCHHHHHHHHHCCCCCCceEEE-ECCEECCCCCH-HHCCEEEEeCCcc-c---
Confidence 35799999999999 99999999999999999999999999999976 66666643222 2334555543321 1
Q ss_pred hhhhccCCCCCCchhhHHHHhcC-------------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT-------------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~-------------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
+++.++..++.+. +...+++.++. ...+++.+..| |+||+||++||||+..++.
T Consensus 88 ----------fp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L-~~~~~~~~~~L--SgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 88 ----------FPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGL-PGSERKYPGQL--SGGQQQRVALARALATSPG 154 (353)
T ss_pred ----------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-CchhhCChhhC--CHHHHHHHHHHHHHhcCCC
Confidence 2222222111110 01123333333 23445666666 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|...++.+.+.|+++..+.|.+++|+|
T Consensus 155 llLLDEP~------------------------------------------s~LD~~~r~~l~~~L~~l~~~~~~tvi~vT 192 (353)
T TIGR03265 155 LLLLDEPL------------------------------------------SALDARVREHLRTEIRQLQRRLGVTTIMVT 192 (353)
T ss_pred EEEEcCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 88888763 356667788889999999888899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 193 Hd 194 (353)
T TIGR03265 193 HD 194 (353)
T ss_pred CC
Confidence 54
No 34
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.86 E-value=6.2e-21 Score=177.86 Aligned_cols=171 Identities=12% Similarity=0.066 Sum_probs=111.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCccc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEPA- 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~- 79 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|++. +.+.++....... ..+..+.++.+.+.
T Consensus 15 ~~il~~is~~i~~G---~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (214)
T TIGR02673 15 VAALHDVSLHIRKG---EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR-IAGEDVNRLRGRQLPLLRRRIGVVFQDFRL 90 (214)
T ss_pred ceeecceeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEEcccCCHHHHHHHHhheEEEecChhh
Confidence 46899999999999 99999999999999999999999999999976 5555554322111 11223333333321
Q ss_pred chhhhhhccCCCCCCchhhHHHHh--cC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVS--MT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d--~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
+..+ .+.+........ .. ..+.+++.++. ...+++.+..| |+||+||++||||+..++..+
T Consensus 91 ~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 91 LPDR--------TVYENVALPLEVRGKKEREIQRRVGAALRQVGL-EHKADAFPEQL--SGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred ccCC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhhhhCChhhC--CHHHHHHHHHHHHHhCCCCEE
Confidence 1111 111110000000 00 01122333333 13344455555 999999999999999777777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 160 lLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~ 196 (214)
T TIGR02673 160 LADEP------------------------------------------TGNLDPDLSERILDLLKRLNK-RGTTVIVATHD 196 (214)
T ss_pred EEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 77765 457777888999999999865 58999999954
No 35
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.86 E-value=5.5e-21 Score=181.64 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=112.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc----ccceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE----DHTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~----~~~~l~i~~l~g~~ 78 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++...... ....+++. .+..
T Consensus 15 ~~il~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~v--~q~~ 88 (243)
T TIGR02315 15 KQALKNINLNINPG---EFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL-LEGTDITKLRGKKLRKLRRRIGMI--FQHY 88 (243)
T ss_pred cceeecceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCcCCCccEEE-ECCEEhhhCCHHHHHHHHhheEEE--cCCC
Confidence 46899999999999 99999999999999999999999999999976 555554332111 12234443 3322
Q ss_pred -cchh--hhhhccCC-CCCCchh-hHH----HHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 79 -AHSN--LLRFALNQ-ETLPHTM-VML----VVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 79 -~~~~--Ll~~~l~~-~~~~~~~-v~~----~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.+.. +..+.... ....... ... ..+..+...+++.++. ...+++.+..| |+||+||++||||+..++.
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrv~la~al~~~p~ 165 (243)
T TIGR02315 89 NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL-ADKAYQRADQL--SGGQQQRVAIARALAQQPD 165 (243)
T ss_pred cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCc-HhhhcCCcccC--CHHHHHHHHHHHHHhcCCC
Confidence 1111 11111000 0000000 000 0000001122333333 13334444445 9999999999999997777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+..+.+.+.|++++.+.|.+++++|
T Consensus 166 llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tiii~t 203 (243)
T TIGR02315 166 LILADEP------------------------------------------IASLDPKTSKQVMDYLKRINKEDGITVIINL 203 (243)
T ss_pred EEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 7777765 3467778889999999999877799999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 204 H~ 205 (243)
T TIGR02315 204 HQ 205 (243)
T ss_pred CC
Confidence 54
No 36
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=5.6e-21 Score=177.73 Aligned_cols=171 Identities=15% Similarity=0.157 Sum_probs=111.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... ..++++........+.
T Consensus 14 ~~il~~vs~~i~~G---~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (211)
T cd03225 14 RPALDDISLTIKKG---EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL-VDGKDLTKLSLKELRRKVGLVFQNPDDQFF 89 (211)
T ss_pred eeeecceEEEEcCC---cEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEcccCCHHHHHhhceEEecChhhhcC
Confidence 46899999999999 99999999999999999999999999999966 5555543321111 2233443222110111
Q ss_pred hhhhhccCCCCCCchhhHHHHh--cCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVS--MTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d--~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+........ +.. ...+++.++. ...+++.+..| |+||+||++||||+..++..+++
T Consensus 90 ~~--------t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 90 GP--------TVEEEVAFGLENLGLPEEEIEERVEEALELVGL-EGLRDRSPFTL--SGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred CC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc-HhhhcCCcccC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 111100000000 000 1122333333 13344455555 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+..+.+.+.|++++.+ |.+++++||.
T Consensus 159 DEP------------------------------------------t~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~ 193 (211)
T cd03225 159 DEP------------------------------------------TAGLDPAGRRELLELLKKLKAE-GKTIIIVTHD 193 (211)
T ss_pred cCC------------------------------------------cccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC
Confidence 765 3567778889999999999875 9999999954
No 37
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.86 E-value=7.3e-21 Score=178.26 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=110.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++.........+..+.++.+.. .+.
T Consensus 13 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (222)
T cd03224 13 SQILFGVSLTVPEG---EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR-FDGRDITGLPPHERARAGIGYVPEGRRIFP 88 (222)
T ss_pred eeEeeeeeEEEcCC---eEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEEcCCCCHHHHHhcCeEEeccccccCC
Confidence 46899999999999 99999999999999999999999999999976 55555433222111122233333322 111
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC--Cc----hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT--TP----WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~--~p----~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
.+ ++.+...+...... .. ..+++.+......+++.+..| |+||+||++||||+..++..+++||
T Consensus 89 ~~--------t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L--S~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 89 EL--------TVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTL--SGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred CC--------cHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhC--CHHHHHHHHHHHHHhcCCCEEEECC
Confidence 11 11110000000000 00 112222211122334445555 9999999999999997777777776
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
| +.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 159 P------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~ 191 (222)
T cd03224 159 P------------------------------------------SEGLAPKIVEEIFEAIRELRD-EGVTILLVEQN 191 (222)
T ss_pred C------------------------------------------cccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 5 457777888999999999876 68999999954
No 38
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.86 E-value=5.3e-21 Score=175.19 Aligned_cols=174 Identities=12% Similarity=0.108 Sum_probs=112.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++...... ...+..+.++.+++..
T Consensus 5 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q~~~~- 79 (190)
T TIGR01166 5 PEVLKGLNFAAERG---EVLALLGANGAGKSTLLLHLNGLLRPQSGAVL-IDGEPLDYSRKGLLERRQRVGLVFQDPDD- 79 (190)
T ss_pred cceecceeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceeEE-ECCEEccccccchHHHHhhEEEEecChhh-
Confidence 56899999999999 99999999999999999999999999999976 666554311111 1112233334333210
Q ss_pred hhhhhccCCCCCCchhhHHHH--hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVV--SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~--d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ ....+.+...+... ... ..+.+++.++.. +.+++.+..| |+||+||++||||+..++..+++
T Consensus 80 ~~-----~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 80 QL-----FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-GLRERPTHCL--SGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cc-----ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-hhhhCChhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 00011110000000 000 011233333332 3445556666 99999999999999987777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
||| +.++|.+..+.+.+.|++++. .|.+++++||..
T Consensus 152 DEP------------------------------------------t~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 152 DEP------------------------------------------TAGLDPAGREQMLAILRRLRA-EGMTVVISTHDV 187 (190)
T ss_pred cCC------------------------------------------cccCCHHHHHHHHHHHHHHHH-cCCEEEEEeecc
Confidence 775 346777888899999999865 589999999753
No 39
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.86 E-value=6.6e-21 Score=187.48 Aligned_cols=177 Identities=14% Similarity=0.098 Sum_probs=117.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
..+|+||||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.......+.++++...... .+..
T Consensus 20 ~~~l~~vsl~i~~G---ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~-i~G~~~~~~~~~~~~~ig~v~q~~~-~~~~ 94 (306)
T PRK13537 20 KLVVDGLSFHVQRG---ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS-LCGEPVPSRARHARQRVGVVPQFDN-LDPD 94 (306)
T ss_pred eEEEecceEEEeCC---cEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEecccchHHHHhcEEEEeccCc-CCCC
Confidence 46899999999999 99999999999999999999999999999976 5555554322222344555533211 1111
Q ss_pred hhhhccCCCCCCchhhHHHHhcCC--------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTT--------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~--------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
+ ...+...+....... ...+++.++.+ ...++.+..| |+|||||++||||+..+|..+++|
T Consensus 95 ~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrl~la~aL~~~P~lllLD 163 (306)
T PRK13537 95 F--------TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGEL--SGGMKRRLTLARALVNDPDVLVLD 163 (306)
T ss_pred C--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhC--CHHHHHHHHHHHHHhCCCCEEEEe
Confidence 1 111111000000000 11233333332 3445556666 999999999999999777777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcc
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDK 234 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~ 234 (415)
|| +.++|......+.+.|+++.. .|.+++++| +
T Consensus 164 EP------------------------------------------t~gLD~~~~~~l~~~l~~l~~-~g~till~s----H 196 (306)
T PRK13537 164 EP------------------------------------------TTGLDPQARHLMWERLRSLLA-RGKTILLTT----H 196 (306)
T ss_pred CC------------------------------------------CcCCCHHHHHHHHHHHHHHHh-CCCEEEEEC----C
Confidence 65 457778888999999999964 599999999 4
Q ss_pred cHHHHHHH
Q psy13975 235 NCDLLYKY 242 (415)
Q Consensus 235 n~~~l~~~ 242 (415)
.++.+.++
T Consensus 197 ~l~e~~~~ 204 (306)
T PRK13537 197 FMEEAERL 204 (306)
T ss_pred CHHHHHHh
Confidence 44444443
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.1e-21 Score=190.53 Aligned_cols=170 Identities=11% Similarity=0.092 Sum_probs=114.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----cceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----HTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~~~l~i~~l~g~~ 78 (415)
+.+|+|+||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... +.++++.. +..
T Consensus 18 ~~il~~vsl~i~~G---ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~-~~g~~i~~~~~~~~~~~~~~ig~v~--q~~ 91 (343)
T PRK11153 18 IHALNNVSLHIPAG---EIFGVIGASGAGKSTLIRCINLLERPTSGRVL-VDGQDLTALSEKELRKARRQIGMIF--QHF 91 (343)
T ss_pred eEEEEeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-ECCEECCcCCHHHHHHHhcCEEEEe--CCC
Confidence 46899999999999 99999999999999999999999999999976 6666654322211 23344443 322
Q ss_pred c-chhhhhhccCCCCCCchhhHHH--HhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 79 A-HSNLLRFALNQETLPHTMVMLV--VSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 79 ~-~~~Ll~~~l~~~~~~~~~v~~~--~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
. +..+ .+.+...+.. ..+.. ...+++.++. ...+++.+..| |+||+||++||||+..+|.
T Consensus 92 ~l~~~~--------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~L--SgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 92 NLLSSR--------TVFDNVALPLELAGTPKAEIKARVTELLELVGL-SDKADRYPAQL--SGGQKQRVAIARALASNPK 160 (343)
T ss_pred ccCCCC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhhCChhhC--CHHHHHHHHHHHHHHcCCC
Confidence 1 1111 1111000000 00000 1122333333 13345555556 9999999999999998777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+....+++.|++++.+.|.+++++|
T Consensus 161 iLlLDEP------------------------------------------ts~LD~~~~~~l~~~L~~l~~~~g~tiilvt 198 (343)
T PRK11153 161 VLLCDEA------------------------------------------TSALDPATTRSILELLKDINRELGLTIVLIT 198 (343)
T ss_pred EEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7777775 3467778889999999999888899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 199 H~ 200 (343)
T PRK11153 199 HE 200 (343)
T ss_pred CC
Confidence 44
No 41
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.5e-21 Score=191.58 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=114.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+++|++|.+. +.+.++..... ...++++..+... .|
T Consensus 16 ~~vl~~vsl~i~~G---e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~-~~g~~i~~~~~-~~~~i~~v~Q~~~-l~-- 87 (369)
T PRK11000 16 VVISKDINLDIHEG---EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF-IGEKRMNDVPP-AERGVGMVFQSYA-LY-- 87 (369)
T ss_pred eEEEeeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-ECCEECCCCCH-hHCCEEEEeCCcc-cC--
Confidence 45899999999999 99999999999999999999999999999976 66655543221 1234454433211 11
Q ss_pred hhhhccCCCCCCchhhHHHHhc-------C------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM-------T------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~-------~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
++.++...+.+ . +...+++.++. ...+++.+..| |+|||||++||||+..++.
T Consensus 88 -----------~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~~~~~~~L--SgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 88 -----------PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQL-AHLLDRKPKAL--SGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred -----------CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC-hhhhcCChhhC--CHHHHHHHHHHHHHhcCCC
Confidence 11111111110 0 01123333333 13445555556 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|.+..+.+.+.|++++.+.|.+++++|
T Consensus 154 lLLLDEPt------------------------------------------s~LD~~~~~~l~~~L~~l~~~~g~tvI~vT 191 (369)
T PRK11000 154 VFLLDEPL------------------------------------------SNLDAALRVQMRIEISRLHKRLGRTMIYVT 191 (369)
T ss_pred EEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 77777763 466777788899999999888899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 192 Hd 193 (369)
T PRK11000 192 HD 193 (369)
T ss_pred CC
Confidence 54
No 42
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.9e-21 Score=181.55 Aligned_cols=180 Identities=13% Similarity=0.062 Sum_probs=114.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........+.++.++.+.+ .+.
T Consensus 18 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (255)
T PRK11300 18 LLAVNNVNLEVREQ---EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIL-LRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93 (255)
T ss_pred EEEEEeeeeEEcCC---eEEEEECCCCCCHHHHHHHHhCCcCCCcceEE-ECCEECCCCCHHHHHhcCeEEeccCcccCC
Confidence 46899999999999 99999999999999999999999999999976 55555543221222233343333332 111
Q ss_pred h--hhhhcc-CCCCCCchhhH-HHHh---cC--------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc
Q psy13975 82 N--LLRFAL-NQETLPHTMVM-LVVS---MT--------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 82 ~--Ll~~~l-~~~~~~~~~v~-~~~d---~~--------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~ 146 (415)
. +..+.. .........+. ...+ +. ....+++.++. ...+++.+..| |+||+||++||||+..
T Consensus 94 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--S~G~~qrv~la~al~~ 170 (255)
T PRK11300 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL-LEHANRQAGNL--AYGQQRRLEIARCMVT 170 (255)
T ss_pred CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh-hhhhhCChhhC--CHHHHHHHHHHHHHhc
Confidence 1 111100 00000000000 0000 00 00112333332 23344555555 9999999999999998
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
++..+++||| +.++|.+..+.+.+.|++++.+.|.+++
T Consensus 171 ~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~L~~~~~~~~~tii 208 (255)
T PRK11300 171 QPEILMLDEP------------------------------------------AAGLNPKETKELDELIAELRNEHNVTVL 208 (255)
T ss_pred CCCEEEEcCC------------------------------------------ccCCCHHHHHHHHHHHHHHHhhcCCEEE
Confidence 8877777775 3467778889999999999877799999
Q ss_pred EeccC
Q psy13975 227 YTSAK 231 (415)
Q Consensus 227 ~tS~k 231 (415)
++||.
T Consensus 209 ~~sH~ 213 (255)
T PRK11300 209 LIEHD 213 (255)
T ss_pred EEeCC
Confidence 99954
No 43
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.85 E-value=7e-21 Score=178.35 Aligned_cols=171 Identities=13% Similarity=0.176 Sum_probs=113.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----c-ceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----H-TRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~-~~l~i~~l~g~ 77 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... + .++++.....
T Consensus 18 ~~~l~~isl~i~~G---~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~v~q~~- 92 (221)
T TIGR02211 18 TRVLKGVSLSIGKG---EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL-FNGQSLSKLSSNERAKLRNKKLGFIYQFH- 92 (221)
T ss_pred eEeEeeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEEhhhcCHhHHHHHHHhcEEEEeccc-
Confidence 35899999999999 99999999999999999999999999999976 5555543322111 1 2344443321
Q ss_pred ccchhhhhhccCCCCCCchhhHH--HHhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 78 PAHSNLLRFALNQETLPHTMVML--VVSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~--~~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
..+..+ .+.+...+. ...+.. ...+++.++. ...+++.+..| |+||+||++||||+..++.
T Consensus 93 ~~~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~laral~~~p~ 161 (221)
T TIGR02211 93 HLLPDF--------TALENVAMPLLIGKKSVKEAKERAYEMLEKVGL-EHRINHRPSEL--SGGERQRVAIARALVNQPS 161 (221)
T ss_pred ccCCCC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhhhhCChhhC--CHHHHHHHHHHHHHhCCCC
Confidence 111111 011100000 000000 1123333333 13345555556 9999999999999997777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+..+.+.+.|++++.+.|.+++++|
T Consensus 162 illlDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~t 199 (221)
T TIGR02211 162 LVLADEP------------------------------------------TGNLDNNNAKIIFDLMLELNRELNTSFLVVT 199 (221)
T ss_pred EEEEeCC------------------------------------------CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7777765 3567778888999999999887799999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 200 H~ 201 (221)
T TIGR02211 200 HD 201 (221)
T ss_pred CC
Confidence 55
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.85 E-value=5.5e-21 Score=180.85 Aligned_cols=171 Identities=18% Similarity=0.146 Sum_probs=110.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........+.++.++.+.. .+.
T Consensus 13 ~~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 88 (236)
T cd03219 13 LVALDDVSFSVRPG---EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL-FDGEDITGLPPHEIARLGIGRTFQIPRLFP 88 (236)
T ss_pred EEEecCceEEecCC---cEEEEECCCCCCHHHHHHHHcCCCCCCCceEE-ECCEECCCCCHHHHHhcCEEEEeccccccc
Confidence 35899999999999 99999999999999999999999999999976 55555543222121122233333222 111
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC------------------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT------------------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~------------------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
.+ .+.+.......... ....+++.++. ...+++.+..| |+||+||++||||
T Consensus 89 ~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrv~la~a 157 (236)
T cd03219 89 EL--------TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-ADLADRPAGEL--SYGQQRRLEIARA 157 (236)
T ss_pred CC--------CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-cchhhCChhhC--CHHHHHHHHHHHH
Confidence 11 11110000000000 00122222222 12334455555 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++||| +.++|.+....+.+.|++++. .|.
T Consensus 158 l~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~ 194 (236)
T cd03219 158 LATDPKLLLLDEP------------------------------------------AAGLNPEETEELAELIRELRE-RGI 194 (236)
T ss_pred HhcCCCEEEEcCC------------------------------------------cccCCHHHHHHHHHHHHHHHH-CCC
Confidence 9977777777765 456777888899999999876 689
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 195 tii~vsH~ 202 (236)
T cd03219 195 TVLLVEHD 202 (236)
T ss_pred EEEEEecC
Confidence 99999954
No 45
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.85 E-value=1.1e-20 Score=190.46 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=117.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+|||||||||++|+|+++|+.|.++ +.+.++..... ...++++.+++.. .
T Consensus 27 ~~~l~~vsl~i~~G---e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~-~~g~~i~~~~~-~~r~ig~vfQ~~~-l--- 97 (375)
T PRK09452 27 KEVISNLDLTINNG---EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM-LDGQDITHVPA-ENRHVNTVFQSYA-L--- 97 (375)
T ss_pred eEEEeeeEEEEeCC---CEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-ECCEECCCCCH-HHCCEEEEecCcc-c---
Confidence 35899999999999 99999999999999999999999999999976 66666643222 2344565544321 1
Q ss_pred hhhhccCCCCCCchhhHHHHhc----CC---------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM----TT---------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~----~~---------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
+++..+..++.+ .. ...+++.++. ...+++.+..| |+||+||++||||+..++.
T Consensus 98 ----------fp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~p~~L--SgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 98 ----------FPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL-EEFAQRKPHQL--SGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred ----------CCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhhhCChhhC--CHHHHHHHHHHHHHhcCCC
Confidence 122222211110 00 0122333333 24456666666 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|...++.+.+.|+.+..+.|.++||+|
T Consensus 165 llLLDEP~------------------------------------------s~LD~~~r~~l~~~L~~l~~~~g~tiI~vT 202 (375)
T PRK09452 165 VLLLDESL------------------------------------------SALDYKLRKQMQNELKALQRKLGITFVFVT 202 (375)
T ss_pred EEEEeCCC------------------------------------------CcCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 77778763 456667788899999999888899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 203 Hd 204 (375)
T PRK09452 203 HD 204 (375)
T ss_pred CC
Confidence 54
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.2e-20 Score=176.88 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=111.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.. ...++++. .+.+. +.
T Consensus 17 ~~il~~vs~~i~~G---~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~----~~~~i~~v--~q~~~~~~ 86 (220)
T cd03293 17 VTALEDISLSVEEG---EFVALVGPSGCGKSTLLRIIAGLERPTSGEVL-VDGEPVTG----PGPDRGYV--FQQDALLP 86 (220)
T ss_pred eEEEeceeEEEeCC---cEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEECcc----ccCcEEEE--eccccccc
Confidence 46899999999999 99999999999999999999999999999965 55544431 12234443 22221 11
Q ss_pred hhhhhccCCCCCCchhhHHH--HhcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLV--VSMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~--~d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+...+.. ..+. ....+++.++. .+.+++.+..| |+||+||++||||+..++..+++
T Consensus 87 ~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 87 WL--------TVLDNVALGLELQGVPKAEARERAEELLELVGL-SGFENAYPHQL--SGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred CC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhhhhCCcccC--CHHHHHHHHHHHHHHcCCCEEEE
Confidence 11 1111100000 0000 01123333333 13344455555 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+..+.+.+.|++++.+.|.+++++||.
T Consensus 156 DEP------------------------------------------t~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 156 DEP------------------------------------------FSALDALTREQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred CCC------------------------------------------CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 765 357777889999999999988789999999954
No 47
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.85 E-value=1.4e-20 Score=174.88 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=113.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++... .....+++ ++.+... +.
T Consensus 13 ~~~l~~~~~~i~~G---~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~-~~~~~~i~--~~~q~~~~~~ 85 (208)
T cd03268 13 KRVLDDISLHVKKG---EIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT-FDGKSYQKN-IEALRRIG--ALIEAPGFYP 85 (208)
T ss_pred eEeEeeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCcCCCceEEE-ECCCcccch-HHHHhhEE--EecCCCccCc
Confidence 46899999999999 99999999999999999999999999999976 554444321 11122333 3333221 11
Q ss_pred hhhhhccCCCCCCchhhHHH--HhcC--CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 82 NLLRFALNQETLPHTMVMLV--VSMT--TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~--~d~~--~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
.+ .+.+...... .... ....+++.++.+ ..+++.+..| |+||+||++||||+..++..+++|||
T Consensus 86 ~~--------tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrv~la~al~~~p~llllDEP- 153 (208)
T cd03268 86 NL--------TARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGF--SLGMKQRLGIALALLGNPDLLILDEP- 153 (208)
T ss_pred cC--------cHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhC--CHHHHHHHHHHHHHhcCCCEEEECCC-
Confidence 11 1111110000 0000 112334554442 4556677777 99999999999999977777777775
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 154 -----------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~ 185 (208)
T cd03268 154 -----------------------------------------TNGLDPDGIKELRELILSLRD-QGITVLISSHL 185 (208)
T ss_pred -----------------------------------------cccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 346777888899999999876 69999999954
No 48
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.85 E-value=1e-20 Score=189.38 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=116.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
..+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.++ +.+.++..... ...++++..++.. .|
T Consensus 15 ~~~l~~isl~i~~G---e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~-i~g~~i~~~~~-~~r~i~~v~Q~~~-l~-- 86 (353)
T PRK10851 15 TQVLNDISLDIPSG---QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR-FHGTDVSRLHA-RDRKVGFVFQHYA-LF-- 86 (353)
T ss_pred eEEEEEeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCH-HHCCEEEEecCcc-cC--
Confidence 35899999999999 99999999999999999999999999999976 66666643221 2234555543321 11
Q ss_pred hhhhccCCCCCCchhhHHHHhcC-----------------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT-----------------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~-----------------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~ 145 (415)
++..+...+.+. +...+++.++.+ ...++.+..| |+||+||++||||+.
T Consensus 87 -----------p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~L--SgGq~QRvalArAL~ 152 (353)
T PRK10851 87 -----------RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQL--SGGQKQRVALARALA 152 (353)
T ss_pred -----------CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhC--CHHHHHHHHHHHHHh
Confidence 111111111100 011233444432 4455566666 999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++|||+ .++|....+.+.+.|++++.++|.++
T Consensus 153 ~~P~llLLDEP~------------------------------------------s~LD~~~r~~l~~~L~~l~~~~g~ti 190 (353)
T PRK10851 153 VEPQILLLDEPF------------------------------------------GALDAQVRKELRRWLRQLHEELKFTS 190 (353)
T ss_pred cCCCEEEEeCCC------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 888777777753 46777788889999999988889999
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++||.
T Consensus 191 i~vTHd 196 (353)
T PRK10851 191 VFVTHD 196 (353)
T ss_pred EEEeCC
Confidence 999943
No 49
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.85 E-value=1e-20 Score=191.92 Aligned_cols=178 Identities=16% Similarity=0.075 Sum_probs=115.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+|||||||||++|+|+.+|++|.+. +.+.++...... ...++++..+.....+.
T Consensus 16 ~~vL~~vs~~i~~G---eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~-l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 16 TTVLDGVDLSVREG---SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL-VAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred EEEEEeeEEEECCC---CEEEEECCCCchHHHHHHHHhcCCCCCCcEEE-ECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 46899999999999 99999999999999999999999999999976 556565443222 23345555332211110
Q ss_pred -hhhhhcc-CCCCCC-chhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 82 -NLLRFAL-NQETLP-HTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 82 -~Ll~~~l-~~~~~~-~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
....+.. ....+. .....-..+....+.+++.++.+ +.+++.+.+| |+|||||+.||||+.+++..+++|||+
T Consensus 92 ~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~L--SgGerQRv~IArAL~~~P~iLLLDEPt- 167 (402)
T PRK09536 92 FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSL--SGGERQRVLLARALAQATPVLLLDEPT- 167 (402)
T ss_pred CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhC--CHHHHHHHHHHHHHHcCCCEEEEECCc-
Confidence 1111110 000000 00000000001112334444443 4455666666 999999999999999888888888763
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
.++|..+...+++.|++++. .|.+++++||
T Consensus 168 -----------------------------------------sgLD~~~~~~l~~lL~~l~~-~g~TIIivsH 197 (402)
T PRK09536 168 -----------------------------------------ASLDINHQVRTLELVRRLVD-DGKTAVAAIH 197 (402)
T ss_pred -----------------------------------------ccCCHHHHHHHHHHHHHHHh-cCCEEEEEEC
Confidence 46677778888899999985 5889999986
No 50
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.3e-21 Score=172.04 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=102.4
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
+++||||++++| ++++|+|+|||||||+|++|.+++.|++|.++ .++.+........+.++++.. .+...|..|
T Consensus 17 AvrdVSF~ae~G---ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~-idg~d~~~~p~~vrr~IGVl~-~e~glY~Rl- 90 (245)
T COG4555 17 AVRDVSFEAEEG---EITGLLGENGAGKTTLLRMIATLLIPDSGKVT-IDGVDTVRDPSFVRRKIGVLF-GERGLYARL- 90 (245)
T ss_pred hhhheeEEeccc---eEEEEEcCCCCCchhHHHHHHHhccCCCceEE-EeecccccChHHHhhhcceec-CCcChhhhh-
Confidence 689999999999 99999999999999999999999999999977 555565544444566677765 444555555
Q ss_pred hhccCCCCCCchh--hHHHHhcCCc------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 85 RFALNQETLPHTM--VMLVVSMTTP------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 85 ~~~l~~~~~~~~~--v~~~~d~~~p------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
+ .+... +....++++. ..+.+.++. .+.+++....+ |.|+||||.||||+..+|..+++|||
T Consensus 91 ----T---~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l-~~~~~rRv~~~--S~G~kqkV~iARAlvh~P~i~vlDEP 160 (245)
T COG4555 91 ----T---ARENLKYFARLNGLSRKEIKARIAELSKRLQL-LEYLDRRVGEF--STGMKQKVAIARALVHDPSILVLDEP 160 (245)
T ss_pred ----h---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhCh-HHHHHHHHhhh--chhhHHHHHHHHHHhcCCCeEEEcCC
Confidence 1 11111 1123444442 234455555 47777888777 99999999999999999999888987
Q ss_pred hh
Q psy13975 157 LS 158 (415)
Q Consensus 157 ~s 158 (415)
++
T Consensus 161 ~s 162 (245)
T COG4555 161 TS 162 (245)
T ss_pred CC
Confidence 54
No 51
>KOG3929|consensus
Probab=99.85 E-value=4.8e-22 Score=183.76 Aligned_cols=238 Identities=21% Similarity=0.285 Sum_probs=169.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-CCCCCCCc-EEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-GIDSPEKG-LALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-Gl~~p~~G-~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
..+++.|..| |||+|.+.. ...++..+ ..++|.|.....- .......++|.+.|......|+...++...+..+.
T Consensus 46 ~~I~~~Gn~~--~tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g-~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~s 122 (363)
T KOG3929|consen 46 FFIGSKGNGG--KTTIILRCFDRDEPPKPPTLALEYTYGRRAKG-HNPKDIANFWELGGGTSLLDLLSVPITGDTLRTFS 122 (363)
T ss_pred eEEEEecCCc--eeEeehhhcCcccCCCCCceeeeeehhhhccC-CCchhHHHHHHhcCCccHHHHhcCcccccchhhhh
Confidence 4666666443 366666554 55556554 5678877543221 22234467899999888888888888888888888
Q ss_pred hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHH----HHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 98 VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGR----CCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 98 v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~----LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+++++|+++|..++-.++.-.+-++.+++.+ ++|... |+-.+.+|-- +.+--..++.
T Consensus 123 lIL~LDls~p~~~W~t~E~~~~~~R~~vd~~-----~~~~~k~~~~L~E~mrqR~~--------------~rvgqd~~d~ 183 (363)
T KOG3929|consen 123 LILVLDLSKPNDLWPTMENLLQATRSHVDKV-----IMKLGKTNAKLVEEMRQRIW--------------NRVGQDHPDH 183 (363)
T ss_pred heeeeecCChHHHHHHHHHHHHHHHHHHHHH-----HHHHhhcCHHHHHHHHHHHH--------------HhcccCCCch
Confidence 9999999999887777766556667666654 111110 2222211100 0000112234
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPFR 253 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f~ 253 (415)
++.+++++|+++|+.|+|.++ +++.|.+..++++||.+|+.|||+|++.|.|.+.-...++..+.|..||.+..
T Consensus 184 e~~dP~P~PV~IVgsKYDvFq------~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaFG~~~~ 257 (363)
T KOG3929|consen 184 ELIDPFPVPVVIVGSKYDVFQ------DFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFGIDKS 257 (363)
T ss_pred hhcCCCCCceEEeccchhhhc------cccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhcCCcCC
Confidence 566778999999999999996 55668899999999999999999999999999999999999999999999876
Q ss_pred CCcceeeCCeeEEeCCCCccccccc--cccccCc
Q psy13975 254 TSALIVEKDAVLIPSGWDNMKKIGI--LYENMQS 285 (415)
Q Consensus 254 ~~a~v~d~d~i~iP~gwDs~~kI~~--l~e~~~~ 285 (415)
....|...+++||-+|.|||++|++ ..||+..
T Consensus 258 ~s~~vD~NkPlfi~~G~DS~~~IG~pp~~~nd~G 291 (363)
T KOG3929|consen 258 KSICVDQNKPLFITAGLDSFGQIGSPPVPENDIG 291 (363)
T ss_pred cceeecCCCceEEEeccccHhhcCCCCCCccccc
Confidence 4444444899999999999999997 4566553
No 52
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.85 E-value=1.6e-20 Score=175.64 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=112.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~~ 82 (415)
++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.......+.. +.++.+.+ .+..
T Consensus 19 ~il~~~sl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~--i~~~~q~~~~~~~ 92 (218)
T cd03266 19 QAVDGVSFTVKPG---EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT-VDGFDVVKEPAEARRR--LGFVSDSTGLYDR 92 (218)
T ss_pred eeecceEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCcCCCCceEE-ECCEEcccCHHHHHhh--EEEecCCcccCcC
Confidence 6999999999999 99999999999999999999999999999976 5555543211111223 33333332 1111
Q ss_pred hhhhccCCCCCCchhhHHHH--hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVV--SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~--d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
+ .+.+...+... ... ....+++.++. .+.+++.+..| |+||+||++||||+..++..+++|
T Consensus 93 ~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~laral~~~p~illlD 161 (218)
T cd03266 93 L--------TARENLEYFAGLYGLKGDELTARLEELADRLGM-EELLDRRVGGF--STGMRQKVAIARALVHDPPVLLLD 161 (218)
T ss_pred C--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHhhhhhhc--CHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1 11110000000 000 01123444444 24456666666 999999999999999777777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 162 EP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~ 195 (218)
T cd03266 162 EP------------------------------------------TTGLDVMATRALREFIRQLRA-LGKCILFSTHI 195 (218)
T ss_pred CC------------------------------------------CcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 65 357777888999999999975 58999999954
No 53
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.85 E-value=4.3e-21 Score=191.20 Aligned_cols=177 Identities=14% Similarity=0.104 Sum_probs=117.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........++++.. +... +.
T Consensus 54 ~~~l~~is~~i~~G---ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~-i~G~~~~~~~~~~~~~ig~v~--q~~~~~~ 127 (340)
T PRK13536 54 KAVVNGLSFTVASG---ECFGLLGPNGAGKSTIARMILGMTSPDAGKIT-VLGVPVPARARLARARIGVVP--QFDNLDL 127 (340)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHHcCCCCCceEEE-ECCEECCcchHHHhccEEEEe--CCccCCC
Confidence 45899999999999 99999999999999999999999999999976 556665432222233445443 3221 11
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCc--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTP--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ ...+...+........ ..+++.++.+ ...++.+..| |+||+||++||+|+..+|..+++
T Consensus 128 ~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~L--S~G~kqrv~lA~aL~~~P~lLiL 196 (340)
T PRK13536 128 EF--------TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDL--SGGMKRRLTLARALINDPQLLIL 196 (340)
T ss_pred CC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 1111100000000000 1122322331 3344455555 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCc
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKED 233 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~ 233 (415)
||| +.++|....+.+.+.|++++. .|.+++++||
T Consensus 197 DEP------------------------------------------t~gLD~~~r~~l~~~l~~l~~-~g~tilisSH--- 230 (340)
T PRK13536 197 DEP------------------------------------------TTGLDPHARHLIWERLRSLLA-RGKTILLTTH--- 230 (340)
T ss_pred ECC------------------------------------------CCCCCHHHHHHHHHHHHHHHh-CCCEEEEECC---
Confidence 765 457788889999999999975 5999999994
Q ss_pred ccHHHHHHHH
Q psy13975 234 KNCDLLYKYL 243 (415)
Q Consensus 234 ~n~~~l~~~l 243 (415)
+++.+.++.
T Consensus 231 -~l~e~~~~~ 239 (340)
T PRK13536 231 -FMEEAERLC 239 (340)
T ss_pred -CHHHHHHhC
Confidence 555544443
No 54
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.3e-20 Score=182.22 Aligned_cols=169 Identities=11% Similarity=0.054 Sum_probs=113.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-----cceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-----HTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-----~~~l~i~~l~g~ 77 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... ..++++. .+.
T Consensus 37 ~~il~~is~~i~~G---e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~-i~g~~~~~~~~~~~~~~~~~~i~~v--~q~ 110 (269)
T cd03294 37 TVGVNDVSLDVREG---EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL-IDGQDIAAMSRKELRELRRKKISMV--FQS 110 (269)
T ss_pred ceEeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE-ECCEEccccChhhhhhhhcCcEEEE--ecC
Confidence 35799999999999 99999999999999999999999999999976 5555543321111 1234443 322
Q ss_pred c-cchhhhhhccCCCCCCchhhHHHHhcC---C------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 78 P-AHSNLLRFALNQETLPHTMVMLVVSMT---T------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 78 ~-~~~~Ll~~~l~~~~~~~~~v~~~~d~~---~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
. .+..+ .+.+... ...... . ...+++.++. ...+++.+..| |+||+||++||||+..+
T Consensus 111 ~~~~~~~--------tv~e~l~-~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~Gq~qrv~lAral~~~ 178 (269)
T cd03294 111 FALLPHR--------TVLENVA-FGLEVQGVPRAEREERAAEALELVGL-EGWEHKYPDEL--SGGMQQRVGLARALAVD 178 (269)
T ss_pred cccCCCC--------cHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHcCC-HhHhhCCcccC--CHHHHHHHHHHHHHhcC
Confidence 2 11111 1111100 000000 0 1123333333 23445555555 99999999999999977
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
+..+++||| +.++|.+..+.+.+.|++++.+.|.++++
T Consensus 179 p~illLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~g~tiii 216 (269)
T cd03294 179 PDILLMDEA------------------------------------------FSALDPLIRREMQDELLRLQAELQKTIVF 216 (269)
T ss_pred CCEEEEcCC------------------------------------------CccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 777777765 35677788899999999998878999999
Q ss_pred eccC
Q psy13975 228 TSAK 231 (415)
Q Consensus 228 tS~k 231 (415)
+||.
T Consensus 217 ~tH~ 220 (269)
T cd03294 217 ITHD 220 (269)
T ss_pred EeCC
Confidence 9953
No 55
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.8e-21 Score=179.32 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=113.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc---c--ceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED---H--TRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~---~--~~l~i~~l~g~ 77 (415)
.++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... . ..+++. .+.
T Consensus 22 ~~il~~isl~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~i~~~~~~~~~~~~~~~i~~v--~q~ 95 (233)
T PRK11629 22 TDVLHNVSFSIGEG---EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI-FNGQPMSKLSSAAKAELRNQKLGFI--YQF 95 (233)
T ss_pred eeeEEeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEEcCcCCHHHHHHHHhccEEEE--ecC
Confidence 36899999999999 99999999999999999999999999999976 6665554332211 1 234444 332
Q ss_pred cc-chhhhhhccCCCCCCchhhH-HHH-hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 78 PA-HSNLLRFALNQETLPHTMVM-LVV-SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 78 ~~-~~~Ll~~~l~~~~~~~~~v~-~~~-d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
+. +..+ .+.+...+ ..+ .+.. ...+++.++. ...+++.+..| |+||+||++||||+..++
T Consensus 96 ~~~~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--SgG~~qrl~la~al~~~p 164 (233)
T PRK11629 96 HHLLPDF--------TALENVAMPLLIGKKKPAEINSRALEMLAAVGL-EHRANHRPSEL--SGGERQRVAIARALVNNP 164 (233)
T ss_pred cccCCCC--------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chhhhCChhhC--CHHHHHHHHHHHHHhcCC
Confidence 21 1111 11111000 000 0000 1122333333 13344455555 999999999999999877
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++||| +.++|.+..+.+.+.|++++.+.|.+++++
T Consensus 165 ~lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~g~tvii~ 202 (233)
T PRK11629 165 RLVLADEP------------------------------------------TGNLDARNADSIFQLLGELNRLQGTAFLVV 202 (233)
T ss_pred CEEEEeCC------------------------------------------CCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 77777775 356777888899999999987779999999
Q ss_pred ccC
Q psy13975 229 SAK 231 (415)
Q Consensus 229 S~k 231 (415)
||.
T Consensus 203 sH~ 205 (233)
T PRK11629 203 THD 205 (233)
T ss_pred eCC
Confidence 954
No 56
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.9e-20 Score=187.31 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=116.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+++|++|.+. +++.++.... ....++++++++...
T Consensus 19 ~~~l~~isl~i~~G---e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~-~~g~~i~~~~-~~~r~ig~vfQ~~~l---- 89 (351)
T PRK11432 19 NTVIDNLNLTIKQG---TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF-IDGEDVTHRS-IQQRDICMVFQSYAL---- 89 (351)
T ss_pred eEEEeeeEEEEcCC---CEEEEECCCCCcHHHHHHHHHCCCCCCceEEE-ECCEECCCCC-HHHCCEEEEeCCccc----
Confidence 35799999999999 99999999999999999999999999999976 6666664322 123455655433211
Q ss_pred hhhhccCCCCCCchhhHHHHhc----CC---------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM----TT---------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~----~~---------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
+++.++..++.+ .. ...+++.++.+ ..+++.+..| |+||+||++||||+..++.
T Consensus 90 ----------fp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~L--SgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 90 ----------FPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQI--SGGQQQRVALARALILKPK 156 (351)
T ss_pred ----------CCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhC--CHHHHHHHHHHHHHHcCCC
Confidence 222222211111 00 01223333331 3445556666 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|...++.+.+.|+.+..+.|.+++|+|
T Consensus 157 lLLLDEP~------------------------------------------s~LD~~~r~~l~~~l~~l~~~~g~tii~vT 194 (351)
T PRK11432 157 VLLFDEPL------------------------------------------SNLDANLRRSMREKIRELQQQFNITSLYVT 194 (351)
T ss_pred EEEEcCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 87778763 356667788888999999888899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 195 Hd 196 (351)
T PRK11432 195 HD 196 (351)
T ss_pred CC
Confidence 53
No 57
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=6.5e-21 Score=180.10 Aligned_cols=171 Identities=13% Similarity=0.106 Sum_probs=113.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCccc-c
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEPA-H 80 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~-~ 80 (415)
++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... ..+..+.++.+.+. +
T Consensus 19 ~il~~~s~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (233)
T cd03258 19 TALKDVSLSVPKG---EIFGIIGRSGAGKSTLIRCINGLERPTSGSVL-VDGTDLTLLSGKELRKARRRIGMIFQHFNLL 94 (233)
T ss_pred eeeecceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEEcccCCHHHHHHHHhheEEEccCcccC
Confidence 6999999999999 99999999999999999999999999999976 6655554321111 11223333333321 1
Q ss_pred hhhhhhccCCCCCCchhhHHH--HhcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 81 SNLLRFALNQETLPHTMVMLV--VSMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~--~d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
..+ .+.+...... ..+. ..+.+++.++. ...+++.+..| |+||+||++||||+..++..++
T Consensus 95 ~~~--------t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~la~al~~~p~lll 163 (233)
T cd03258 95 SSR--------TVFENVALPLEIAGVPKAEIEERVLELLELVGL-EDKADAYPAQL--SGGQKQRVGIARALANNPKVLL 163 (233)
T ss_pred CCC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-hhhhhcChhhC--CHHHHHHHHHHHHHhcCCCEEE
Confidence 111 1111100000 0000 01123333333 23344555555 9999999999999997777777
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||| ..++|.+..+.+.+.|+.++.+.|.+++++||.
T Consensus 164 LDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 164 CDEA------------------------------------------TSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred ecCC------------------------------------------CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 7765 357777888999999999987779999999954
No 58
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.85 E-value=4.5e-21 Score=178.73 Aligned_cols=173 Identities=12% Similarity=0.109 Sum_probs=110.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc--
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-- 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-- 80 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++. ....+++ ++.+++.+
T Consensus 12 ~~~l~~isl~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~-~~g~~~~----~~~~~i~--~v~q~~~~~~ 81 (213)
T cd03235 12 HPVLEDVSFEVKPG---EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR-VFGKPLE----KERKRIG--YVPQRRSIDR 81 (213)
T ss_pred EEeeecceeEEcCC---CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE-ECCccHH----HHHhheE--Eecccccccc
Confidence 35899999999999 99999999999999999999999999999965 4443331 1122333 33333221
Q ss_pred ---hhhhhhcc-CCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 81 ---SNLLRFAL-NQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 81 ---~~Ll~~~l-~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
..+..... ......... ............+++.++. ...+++.+..| |+||+||++||||+..++..+++||
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 82 DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGL-SELADRQIGEL--SGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC-HHHHhCCcccC--CHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 01111110 000000000 0000000001123333333 13344555555 9999999999999997777777776
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
| +.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 159 P------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~ 191 (213)
T cd03235 159 P------------------------------------------FAGVDPKTQEDIYELLRELRR-EGMTILVVTHD 191 (213)
T ss_pred C------------------------------------------cccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 5 457777888999999999986 68999999954
No 59
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.85 E-value=1.2e-20 Score=178.12 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=110.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcccc--ceEEEEEecCcc-c
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDH--TRLGVWILDGEP-A 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~--~~l~i~~l~g~~-~ 79 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++........ ..+++. .+.. .
T Consensus 13 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~~--~q~~~~ 86 (232)
T cd03218 13 RKVVNGVSLSVKQG---EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL-LDGQDITKLPMHKRARLGIGYL--PQEASI 86 (232)
T ss_pred EEeeccceeEecCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEecccCCHhHHHhccEEEe--cCCccc
Confidence 35899999999999 99999999999999999999999999999966 55544432221121 224433 3322 1
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcCC--------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMTT--------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~~--------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
+..+ .+.+...+....... ...+++.++. ....++.+..| |+||+||++||||+..++..+
T Consensus 87 ~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrl~la~al~~~p~ll 155 (232)
T cd03218 87 FRKL--------TVEENILAVLEIRGLSKKEREEKLEELLEEFHI-THLRKSKASSL--SGGERRRVEIARALATNPKFL 155 (232)
T ss_pred cccC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhhhhCChhhC--CHHHHHHHHHHHHHhcCCCEE
Confidence 1111 111111000000000 0122333333 13344455555 999999999999999777777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 156 llDEP------------------------------------------t~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~ 192 (232)
T cd03218 156 LLDEP------------------------------------------FAGVDPIAVQDIQKIIKILKD-RGIGVLITDHN 192 (232)
T ss_pred EecCC------------------------------------------cccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 77765 457777888999999999975 58999999953
No 60
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.85 E-value=6.5e-21 Score=180.54 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=112.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc-h
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-S 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++......... .+.++.+...+ .
T Consensus 14 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~-~~g~~i~~~~~~~~~--~i~~~~q~~~~~~ 87 (236)
T TIGR03864 14 RRALDDVSFTVRPG---EFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS-VAGHDLRRAPRAALA--RLGVVFQQPTLDL 87 (236)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCcCCCceEEE-ECCEEcccCChhhhh--hEEEeCCCCCCcc
Confidence 46899999999999 99999999999999999999999999999976 555554332211122 33333333211 1
Q ss_pred hhhhhccCCCCCCchhhHHHH--hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVV--SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~--d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+....... .+. ....+++.++. ...+++.+..| |+||+||++||||+..++..+++
T Consensus 88 ~~--------t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--S~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 88 DL--------SVRQNLRYHAALHGLSRAEARERIAALLARLGL-AERADDKVREL--NGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred cC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhhhcCChhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 01110000000 000 01122333333 13344555555 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+..+.+.+.|++++.+.|.+++++||.
T Consensus 157 DEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 192 (236)
T TIGR03864 157 DEP------------------------------------------TVGLDPASRAAIVAHVRALCRDQGLSVLWATHL 192 (236)
T ss_pred cCC------------------------------------------ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 765 457777888999999999987679999999954
No 61
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.85 E-value=5.4e-21 Score=177.13 Aligned_cols=170 Identities=14% Similarity=0.088 Sum_probs=111.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc---cc--cceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR---ED--HTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~---~~--~~~l~i~~l~g~ 77 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|++. +.+.++..... .. ...+++. .+.
T Consensus 11 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~~--~q~ 84 (206)
T TIGR03608 11 KIILDDLNLTIEKG---KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVY-LNGKETPPLNSKKASKFRREKLGYL--FQN 84 (206)
T ss_pred EEEEeceEEEEeCC---cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE-ECCEEccccchhhHHHHHHhCeeEE--ecc
Confidence 46899999999999 99999999999999999999999999999965 55555332111 11 1234443 322
Q ss_pred cc-chhhhhhccCCCCCCchhhHHHHh--cCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 78 PA-HSNLLRFALNQETLPHTMVMLVVS--MTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 78 ~~-~~~Ll~~~l~~~~~~~~~v~~~~d--~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
+. +..+ .+.+...+.... ... ...+++.++. ...+++.+..| |+||+||++||||+..++
T Consensus 85 ~~~~~~~--------t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~l--S~G~~qr~~laral~~~p 153 (206)
T TIGR03608 85 FALIENE--------TVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-NLKLKQKIYEL--SGGEQQRVALARAILKDP 153 (206)
T ss_pred hhhccCC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCc-hhhhcCChhhC--CHHHHHHHHHHHHHHcCC
Confidence 21 1101 111100000000 000 1122333333 23344555555 999999999999999888
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++||| +.++|.+..+.+.+.|++++.+ |.+++++
T Consensus 154 ~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~-~~tii~~ 190 (206)
T TIGR03608 154 PLILADEP------------------------------------------TGSLDPKNRDEVLDLLLELNDE-GKTIIIV 190 (206)
T ss_pred CEEEEeCC------------------------------------------cCCCCHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 77777775 3467778889999999999754 8999999
Q ss_pred ccCC
Q psy13975 229 SAKE 232 (415)
Q Consensus 229 S~k~ 232 (415)
||..
T Consensus 191 sh~~ 194 (206)
T TIGR03608 191 THDP 194 (206)
T ss_pred eCCH
Confidence 9663
No 62
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.85 E-value=1.2e-20 Score=177.73 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=113.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-----cceEEEEEecCcc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-----HTRLGVWILDGEP 78 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-----~~~l~i~~l~g~~ 78 (415)
++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. |.+.++....... ...+++. .+.+
T Consensus 24 ~~l~~~s~~i~~G---e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~~--~q~~ 97 (228)
T PRK10584 24 SILTGVELVVKRG---ETIALIGESGSGKSTLLAILAGLDDGSSGEVS-LVGQPLHQMDEEARAKLRAKHVGFV--FQSF 97 (228)
T ss_pred EEEeccEEEEcCC---CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE-ECCEEcccCCHHHHHHHHhheEEEE--Eccc
Confidence 4899999999999 99999999999999999999999999999976 6655554322211 1234443 3322
Q ss_pred c-chhhhhhccCCCCCCchhhH-HHH-hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 79 A-HSNLLRFALNQETLPHTMVM-LVV-SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 79 ~-~~~Ll~~~l~~~~~~~~~v~-~~~-d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
. +..+ ...+.... ..+ .... ...+++.++.. +.+++.+..| |+||+||++||||+..++.
T Consensus 98 ~l~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~Ge~qrl~la~al~~~p~ 166 (228)
T PRK10584 98 MLIPTL--------NALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQL--SGGEQQRVALARAFNGRPD 166 (228)
T ss_pred ccCCCc--------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhC--CHHHHHHHHHHHHHhcCCC
Confidence 1 1111 11110000 000 0000 11223333331 3344555555 9999999999999997777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+..+.+.+.|++++.++|.+++++|
T Consensus 167 llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 204 (228)
T PRK10584 167 VLFADEP------------------------------------------TGNLDRQTGDKIADLLFSLNREHGTTLILVT 204 (228)
T ss_pred EEEEeCC------------------------------------------CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7777765 3577778889999999999888899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 205 H~ 206 (228)
T PRK10584 205 HD 206 (228)
T ss_pred cC
Confidence 65
No 63
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.85 E-value=5.3e-21 Score=192.02 Aligned_cols=170 Identities=18% Similarity=0.180 Sum_probs=124.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
..++++|||+|.+| ++.+|+|+||||||||+++|.|+++|++|+++ +.+..+.-....+..+.+|.++.++..+
T Consensus 17 ~~And~V~l~v~~G---eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~-v~G~~v~~~sP~dA~~~GIGMVhQHF~L-- 90 (501)
T COG3845 17 VVANDDVSLSVKKG---EIHALLGENGAGKSTLMKILFGLYQPDSGEIR-VDGKEVRIKSPRDAIRLGIGMVHQHFML-- 90 (501)
T ss_pred EEecCceeeeecCC---cEEEEeccCCCCHHHHHHHHhCcccCCcceEE-ECCEEeccCCHHHHHHcCCcEEeecccc--
Confidence 35789999999999 99999999999999999999999999999987 6777776666667778888877765321
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCc--hh-HHHHHHhHHHHHHHHHhhhc-----------CChhhHHHHHHHHHhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTP--WN-IIDELHNWASVLQDHIDSLN-----------IGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p--~~-~l~~l~~w~~~l~~~~~~L~-----------lSgGekQRl~LArAl~~~~ 148 (415)
++..++..++-+... +. +++.-.. .+.+.+..++++ ||-|+|||++|.++|.+.+
T Consensus 91 ----------v~~lTV~ENiiLg~e~~~~~~~~~~~~-~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 91 ----------VPTLTVAENIILGLEPSKGGLIDRRQA-RARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred ----------ccccchhhhhhhcCccccccccCHHHH-HHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 333344433333331 10 1111111 234444444444 3999999999999999888
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++|||++ -+++.+.|.+++.||.++. .|.+++|+
T Consensus 160 ~iLILDEPTa------------------------------------------VLTP~E~~~lf~~l~~l~~-~G~tIi~I 196 (501)
T COG3845 160 RLLILDEPTA------------------------------------------VLTPQEADELFEILRRLAA-EGKTIIFI 196 (501)
T ss_pred CEEEEcCCcc------------------------------------------cCCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 8888888743 4456778888888998865 59999999
Q ss_pred ccCC
Q psy13975 229 SAKE 232 (415)
Q Consensus 229 S~k~ 232 (415)
|||-
T Consensus 197 THKL 200 (501)
T COG3845 197 THKL 200 (501)
T ss_pred eccH
Confidence 9863
No 64
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.2e-20 Score=171.30 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=100.0
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC-----CcEEEEeceeecCCCCc---cccceEEEEE
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE-----KGLALEYAYINVSDEYR---EDHTRLGVWI 73 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~-----~G~il~~~~~~v~~~~~---~~~~~l~i~~ 73 (415)
++.+|++||+.|+++ ++.+|+||+|||||||||+|..+.+.. .|.++ |.+.++.+... +-+.++|+++
T Consensus 19 ~~~aL~~i~l~i~~~---~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~-~~g~ni~~~~~d~~~lRr~vGMVF 94 (253)
T COG1117 19 DKHALKDINLDIPKN---KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVL-LDGKNIYDPKVDVVELRRRVGMVF 94 (253)
T ss_pred chhhhccCceeccCC---ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEE-ECCeeccCCCCCHHHHHHHheeec
Confidence 467999999999999 999999999999999999998875544 37766 77777765432 2356778887
Q ss_pred ecCcccchhhhhhc-cC--CCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhccc
Q psy13975 74 LDGEPAHSNLLRFA-LN--QETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 74 l~g~~~~~~Ll~~~-l~--~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~ 148 (415)
+...++-.++..++ +. -.-+.+ .. +|- .....+....+| +.+...+++ ++||||||||++||||+..+|
T Consensus 95 QkPnPFp~SIydNVayG~r~~g~~~-~~---lde-iVe~sLk~AaLW-dEVKDrL~~sa~~LSGGQQQRLcIARalAv~P 168 (253)
T COG1117 95 QKPNPFPMSIYDNVAYGLRLHGIKD-KE---LDE-IVESSLKKAALW-DEVKDRLHKSALGLSGGQQQRLCIARALAVKP 168 (253)
T ss_pred cCCCCCCchHHHHHHHhHHhhccch-HH---HHH-HHHHHHHHhHhH-HHhHHHhhCCccCCChhHHHHHHHHHHHhcCC
Confidence 76655433332111 11 111111 10 000 011235666788 444444433 667999999999999999888
Q ss_pred ccccchhhhhh
Q psy13975 149 LRAHLIELLSF 159 (415)
Q Consensus 149 ~~~~lde~~s~ 159 (415)
..+++|||+|+
T Consensus 169 eVlLmDEPtSA 179 (253)
T COG1117 169 EVLLMDEPTSA 179 (253)
T ss_pred cEEEecCcccc
Confidence 88888888763
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1e-20 Score=179.45 Aligned_cols=177 Identities=15% Similarity=0.094 Sum_probs=111.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc----cccceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR----EDHTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~----~~~~~l~i~~l~g~~ 78 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... .....+++. .+..
T Consensus 14 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~~--~q~~ 87 (241)
T cd03256 14 KKALKDVSLSINPG---EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL-IDGTDINKLKGKALRQLRRQIGMI--FQQF 87 (241)
T ss_pred cEEEecceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCcCCCCceEE-ECCEeccccCHhHHHHHHhccEEE--cccC
Confidence 46899999999999 99999999999999999999999999999976 55555433211 112234443 3222
Q ss_pred -cchhh--hhhccCC-CCCCchhhHHHHhcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 79 -AHSNL--LRFALNQ-ETLPHTMVMLVVSMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 79 -~~~~L--l~~~l~~-~~~~~~~v~~~~d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
.+..+ ..+.... ...... ........ ....+++.++. ...+++.+..| |+||+||++||||+..++
T Consensus 88 ~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~la~al~~~p 163 (241)
T cd03256 88 NLIERLSVLENVLSGRLGRRST-WRSLFGLFPKEEKQRALAALERVGL-LDKAYQRADQL--SGGQQQRVAIARALMQQP 163 (241)
T ss_pred cccccCcHHHHHHhhhcccchh-hhhhcccCcHHHHHHHHHHHHHcCC-hhhhCCCcccC--CHHHHHHHHHHHHHhcCC
Confidence 11111 1110000 000000 00000000 00112233332 12233344445 999999999999999777
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++||| +.++|....+.+.+.|++++.+.|.+++++
T Consensus 164 ~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 201 (241)
T cd03256 164 KLILADEP------------------------------------------VASLDPASSRQVMDLLKRINREEGITVIVS 201 (241)
T ss_pred CEEEEeCc------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 77777765 356777888999999999988789999999
Q ss_pred ccC
Q psy13975 229 SAK 231 (415)
Q Consensus 229 S~k 231 (415)
||.
T Consensus 202 tH~ 204 (241)
T cd03256 202 LHQ 204 (241)
T ss_pred eCC
Confidence 953
No 66
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.85 E-value=1.2e-20 Score=185.33 Aligned_cols=169 Identities=15% Similarity=0.108 Sum_probs=112.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.......+.++++. .+... +.
T Consensus 17 ~~~l~~vsl~i~~G---e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~i~~v--~q~~~~~~ 90 (303)
T TIGR01288 17 KVVVNDLSFTIARG---ECFGLLGPNGAGKSTIARMLLGMISPDRGKIT-VLGEPVPSRARLARVAIGVV--PQFDNLDP 90 (303)
T ss_pred eEEEcceeEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEECcccHHHHhhcEEEE--eccccCCc
Confidence 35899999999999 99999999999999999999999999999976 55555432211112334444 33221 11
Q ss_pred hhhhhccCCCCCCchhhHHH--HhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLV--VSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~--~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+...+.. ..+.. ...+++.++.. ...++.+..| |+|||||++||||+..++..+++
T Consensus 91 ~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~L--SgG~~qrv~la~al~~~p~lllL 159 (303)
T TIGR01288 91 EF--------TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALL--SGGMKRRLTLARALINDPQLLIL 159 (303)
T ss_pred CC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 1111110000 00000 01123333331 3344555556 99999999999999987777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 160 DEP------------------------------------------t~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~ 194 (303)
T TIGR01288 160 DEP------------------------------------------TTGLDPHARHLIWERLRSLLA-RGKTILLTTHF 194 (303)
T ss_pred eCC------------------------------------------CcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC
Confidence 775 347777888999999999975 59999999954
No 67
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.85 E-value=1.3e-20 Score=189.02 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=116.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCC--cEEEEeceeecCCCCccccceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK--GLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~--G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~ 80 (415)
..+|+++||+|.+| ++++|+|+|||||||||++|+|+++|++ |.+. +.+.++..... ...++++.+++.. .
T Consensus 18 ~~~l~~vsl~i~~G---e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~-~~g~~~~~~~~-~~r~ig~vfQ~~~-l- 90 (362)
T TIGR03258 18 NTVLDDLSLEIEAG---ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA-IADRDLTHAPP-HKRGLALLFQNYA-L- 90 (362)
T ss_pred eEEEeeeEEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEE-ECCEECCCCCH-HHCCEEEEECCcc-c-
Confidence 35899999999999 9999999999999999999999999999 9976 66655543221 2334555544321 1
Q ss_pred hhhhhhccCCCCCCchhhHHHHh----cCC---------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVS----MTT---------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d----~~~---------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
+++.++..++. ... ...+++.++. ...+++.+..| |+||||||+|||||..+
T Consensus 91 ------------~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~~~~~~L--SgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 91 ------------FPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL-GDAAAHLPAQL--SGGMQQRIAIARAIAIE 155 (362)
T ss_pred ------------CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-CchhhCChhhC--CHHHHHHHHHHHHHhcC
Confidence 12222221111 000 1122333333 13455666666 99999999999999988
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh-CCeEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF-GAGLF 226 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~-Gasli 226 (415)
+..+++|||+ .++|...++.+.+.|+++..++ |.+++
T Consensus 156 P~llLLDEP~------------------------------------------s~LD~~~r~~l~~~l~~l~~~~~g~til 193 (362)
T TIGR03258 156 PDVLLLDEPL------------------------------------------SALDANIRANMREEIAALHEELPELTIL 193 (362)
T ss_pred CCEEEEcCcc------------------------------------------ccCCHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 8888888763 4666777888999999998887 89999
Q ss_pred EeccC
Q psy13975 227 YTSAK 231 (415)
Q Consensus 227 ~tS~k 231 (415)
|+||.
T Consensus 194 ~vTHd 198 (362)
T TIGR03258 194 CVTHD 198 (362)
T ss_pred EEeCC
Confidence 99954
No 68
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.6e-20 Score=183.11 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=113.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc---cccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR---EDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~---~~~~~l~i~~l~g~~~ 79 (415)
+++|+||||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++..... ....++++..+.....
T Consensus 20 ~~~l~~vs~~i~~G---e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~ 95 (287)
T PRK13637 20 KKALDNVNIEIEDG---EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII-IDGVDITDKKVKLSDIRKKVGLVFQYPEYQ 95 (287)
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhcCCCCCccEEE-ECCEECCCcCccHHHHhhceEEEecCchhc
Confidence 36999999999999 99999999999999999999999999999976 56656543211 1123455554432111
Q ss_pred chhhhhhccCCCCCCchhhHH--HHhcCC------chhHHHHHHhH-HHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVML--VVSMTT------PWNIIDELHNW-ASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~--~~d~~~------p~~~l~~l~~w-~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
+... .+.+...+. ...+.. ...+++.++.. ....++.+..| |+||+||++||||+..+|..
T Consensus 96 ~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~L--SgGq~qrv~iAraL~~~P~l 165 (287)
T PRK13637 96 LFEE--------TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFEL--SGGQKRRVAIAGVVAMEPKI 165 (287)
T ss_pred cccc--------cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccC--CHHHHHHHHHHHHHHcCCCE
Confidence 1000 010000000 000000 01223333321 02234445555 99999999999999987777
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++||| +.++|......+.+.|++++.+.|.+++++||
T Consensus 166 lllDEP------------------------------------------t~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtH 203 (287)
T PRK13637 166 LILDEP------------------------------------------TAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203 (287)
T ss_pred EEEECC------------------------------------------ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 777775 34677788889999999998878999999994
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 204 d 204 (287)
T PRK13637 204 S 204 (287)
T ss_pred C
Confidence 4
No 69
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.84 E-value=2.8e-20 Score=175.43 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=111.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|++. +.+.++.........+..+.++.+... +.
T Consensus 13 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (230)
T TIGR03410 13 SHILRGVSLEVPKG---EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIR-LDGEDITKLPPHERARAGIAYVPQGREIFP 88 (230)
T ss_pred eEEecceeeEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE-ECCEECCCCCHHHHHHhCeEEeccCCcccC
Confidence 36899999999999 99999999999999999999999999999976 555554332221111223333333321 11
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCC-ch----hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTT-PW----NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~-p~----~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
.+ .+.+...+....... .. .+++.++.-....++.+..| |+||+||++||||+..++..+++|||
T Consensus 89 ~~--------tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L--S~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 89 RL--------TVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDL--SGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred CC--------cHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhC--CHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 10 111111000001000 01 11222221012334555555 99999999999999977777777765
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|......+.+.|++++.+.|.+++++||.
T Consensus 159 ------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 191 (230)
T TIGR03410 159 ------------------------------------------TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191 (230)
T ss_pred ------------------------------------------cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 356777888899999999987678999999954
No 70
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.2e-20 Score=175.04 Aligned_cols=171 Identities=16% Similarity=0.100 Sum_probs=110.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........+..+.++.+.. .+.
T Consensus 18 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (237)
T PRK11614 18 IQALHEVSLHINQG---EIVTLIGANGAGKTTLLGTLCGDPRATSGRIV-FDGKDITDWQTAKIMREAVAIVPEGRRVFS 93 (237)
T ss_pred ceeeeeeEEEEcCC---cEEEEECCCCCCHHHHHHHHcCCCCCCCceEE-ECCEecCCCCHHHHHHhCEEEeccCcccCC
Confidence 46899999999999 99999999999999999999999999999966 66655543222111222344443322 111
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCC------chhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTT------PWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~------p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
.+ .+.+........... ...+++.+. . ....+..+..| |+||+||++||||+..++..+++|
T Consensus 94 ~~--------tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~L--S~G~~qrl~la~al~~~p~illlD 162 (237)
T PRK11614 94 RM--------TVEENLAMGGFFAERDQFQERIKWVYELFPRL-HERRIQRAGTM--SGGEQQMLAIGRALMSQPRLLLLD 162 (237)
T ss_pred CC--------cHHHHHHHhhhccChhHHHHHHHHHHHHHHHH-HHHHhCchhhC--CHHHHHHHHHHHHHHhCCCEEEEc
Confidence 11 010000000000000 011122221 1 12233445555 999999999999999777777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 163 EP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~ 196 (237)
T PRK11614 163 EP------------------------------------------SLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQN 196 (237)
T ss_pred Cc------------------------------------------cccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCc
Confidence 65 346777888899999999875 49999999943
No 71
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.84 E-value=9.3e-21 Score=178.17 Aligned_cols=175 Identities=14% Similarity=0.142 Sum_probs=111.8
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc--cccceEEEEEecCcccch
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR--EDHTRLGVWILDGEPAHS 81 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~--~~~~~l~i~~l~g~~~~~ 81 (415)
++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++..... ....+..+.++.+.+.+
T Consensus 19 ~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~- 93 (228)
T cd03257 19 KALDDVSFSIKKG---ETLGLVGESGSGKSTLARAILGLLKPTSGSII-FDGKDLLKLSRRLRKIRRKEIQMVFQDPMS- 93 (228)
T ss_pred eeecCceeEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEEccccchhhHHHhhccEEEEecCchh-
Confidence 6899999999999 99999999999999999999999999999976 55555543221 01112233333333210
Q ss_pred hhhhhccCCCCCCchhhHH--HHhcCCc--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 82 NLLRFALNQETLPHTMVML--VVSMTTP--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~--~~d~~~p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
.+. ....+.+..... ....... ..+++.++.....+++.+..| |+||+||++||||+..++..+
T Consensus 94 ~~~----~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--S~G~~qrv~laral~~~p~ll 167 (228)
T cd03257 94 SLN----PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHEL--SGGQRQRVAIARALALNPKLL 167 (228)
T ss_pred hcC----CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhc--CHHHHHHHHHHHHHhcCCCEE
Confidence 000 000111100000 0000000 012222222112334445555 999999999999999777777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|++++.+.|.+++++||.
T Consensus 168 lLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 168 IADEP------------------------------------------TSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred EecCC------------------------------------------CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 77765 346777888999999999988779999999954
No 72
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.1e-20 Score=188.52 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=115.7
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
.+|+++||+|.+| ++++|+|+|||||||||++|+|+++|+.|.++ +.+.++.... .....+++.+++.. .
T Consensus 33 ~~l~~vsl~i~~G---e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~-i~g~~i~~~~-~~~r~ig~vfQ~~~-l---- 102 (377)
T PRK11607 33 HAVDDVSLTIYKG---EIFALLGASGCGKSTLLRMLAGFEQPTAGQIM-LDGVDLSHVP-PYQRPINMMFQSYA-L---- 102 (377)
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-ECCEECCCCC-HHHCCEEEEeCCCc-c----
Confidence 5899999999999 99999999999999999999999999999976 6666554322 22345566544321 1
Q ss_pred hhhccCCCCCCchhhHHHHhc----CC---------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 84 LRFALNQETLPHTMVMLVVSM----TT---------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~d~----~~---------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
+++.++..++.+ .. ...+++.++. ....++.+..| |+||+||++||||+..+|..
T Consensus 103 ---------fp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~~~~L--SgGq~QRVaLARAL~~~P~l 170 (377)
T PRK11607 103 ---------FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHM-QEFAKRKPHQL--SGGQRQRVALARSLAKRPKL 170 (377)
T ss_pred ---------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCChhhC--CHHHHHHHHHHHHHhcCCCE
Confidence 222222211111 00 0122333333 23445555556 99999999999999988888
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++|||+ .++|...++.+.+.|+++..+.|.+++|+||
T Consensus 171 LLLDEP~------------------------------------------s~LD~~~r~~l~~~l~~l~~~~g~tii~vTH 208 (377)
T PRK11607 171 LLLDEPM------------------------------------------GALDKKLRDRMQLEVVDILERVGVTCVMVTH 208 (377)
T ss_pred EEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 8888763 3566677888888899998888999999996
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 209 d 209 (377)
T PRK11607 209 D 209 (377)
T ss_pred C
Confidence 4
No 73
>PRK10908 cell division protein FtsE; Provisional
Probab=99.84 E-value=2.1e-20 Score=175.40 Aligned_cols=169 Identities=11% Similarity=0.121 Sum_probs=110.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----cceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----HTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~~~l~i~~l~g~~ 78 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... +..+++. .+.+
T Consensus 15 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~~i~~~--~q~~ 88 (222)
T PRK10908 15 RQALQGVTFHMRPG---EMAFLTGHSGAGKSTLLKLICGIERPSAGKIW-FSGHDITRLKNREVPFLRRQIGMI--FQDH 88 (222)
T ss_pred CeEEeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEcccCChhHHHHHHhheEEE--ecCc
Confidence 46899999999999 99999999999999999999999999999976 5555553321111 2233433 3322
Q ss_pred c-chhhhhhccCCCCCCchhhHHH--HhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 79 A-HSNLLRFALNQETLPHTMVMLV--VSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 79 ~-~~~Ll~~~l~~~~~~~~~v~~~--~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
. +..+ .+.+...... ..... ...+++.++. ...+++.+..| |+||+||++||||+..++.
T Consensus 89 ~~~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 89 HLLMDR--------TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGL-LDKAKNFPIQL--SGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred cccccc--------cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCC-hhhhhCCchhC--CHHHHHHHHHHHHHHcCCC
Confidence 1 1111 0111000000 00000 0122333333 13344455555 9999999999999997777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+..+.+.+.|+.++. .|.+++++|
T Consensus 158 llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tiii~s 194 (222)
T PRK10908 158 VLLADEP------------------------------------------TGNLDDALSEGILRLFEEFNR-VGVTVLMAT 194 (222)
T ss_pred EEEEeCC------------------------------------------CCcCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 7777765 346777788889999999875 488999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 195 H~ 196 (222)
T PRK10908 195 HD 196 (222)
T ss_pred CC
Confidence 54
No 74
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.84 E-value=2.2e-20 Score=180.45 Aligned_cols=170 Identities=12% Similarity=0.098 Sum_probs=112.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----cceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----HTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~~~l~i~~l~g~~ 78 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... ..++++. .+..
T Consensus 20 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~~i~~v--~q~~ 93 (269)
T PRK11831 20 RCIFDNISLTVPRG---KITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL-FDGENIPAMSRSRLYTVRKRMSML--FQSG 93 (269)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEEccccChhhHHHHhhcEEEE--eccc
Confidence 35899999999999 99999999999999999999999999999976 5555543321111 2234443 3222
Q ss_pred -cchhhhhhccCCCCCCchhhHHHHhc---CC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 79 -AHSNLLRFALNQETLPHTMVMLVVSM---TT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 79 -~~~~Ll~~~l~~~~~~~~~v~~~~d~---~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
.+..+ .+.+...+..... .. ...+++.++. ...+++.+..| |+||+||++||||+..++
T Consensus 94 ~~~~~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--SgGq~qrv~laral~~~p 162 (269)
T PRK11831 94 ALFTDM--------NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL-RGAAKLMPSEL--SGGMARRAALARAIALEP 162 (269)
T ss_pred ccCCCC--------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCC-hhhhhCChhhC--CHHHHHHHHHHHHHhcCC
Confidence 11111 1111100000000 00 0112333333 23344455555 999999999999999777
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++||| +.++|.+..+.+.+.|++++.+.|.+++++
T Consensus 163 ~lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~g~tiiiv 200 (269)
T PRK11831 163 DLIMFDEP------------------------------------------FVGQDPITMGVLVKLISELNSALGVTCVVV 200 (269)
T ss_pred CEEEEcCC------------------------------------------CccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 77777765 457777888999999999988779999999
Q ss_pred ccC
Q psy13975 229 SAK 231 (415)
Q Consensus 229 S~k 231 (415)
||.
T Consensus 201 sH~ 203 (269)
T PRK11831 201 SHD 203 (269)
T ss_pred ecC
Confidence 953
No 75
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.84 E-value=2.1e-20 Score=174.18 Aligned_cols=171 Identities=11% Similarity=0.041 Sum_probs=111.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCcc-c
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEP-A 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~-~ 79 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... ..+..+.++.+.+ .
T Consensus 14 ~~~l~~~sl~i~~G---~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 89 (214)
T cd03292 14 TAALDGINISISAG---EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR-VNGQDVSDLRGRAIPYLRRKIGVVFQDFRL 89 (214)
T ss_pred ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEEcccCCHHHHHHHHHheEEEecCchh
Confidence 46899999999999 99999999999999999999999999999965 6655553321111 1122333333322 1
Q ss_pred chhhhhhccCCCCCCchhhHHHH--hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVV--SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~--d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
+..+ .+.+....... .... ...+++.++. ...+++.+..| |+||+||++||||+..++..+
T Consensus 90 ~~~~--------t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~laral~~~p~ll 158 (214)
T cd03292 90 LPDR--------NVYENVAFALEVTGVPPREIRKRVPAALELVGL-SHKHRALPAEL--SGGEQQRVAIARAIVNSPTIL 158 (214)
T ss_pred ccCC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHhhCChhhc--CHHHHHHHHHHHHHHcCCCEE
Confidence 1111 11111000000 0000 0122333333 13344455555 999999999999999877777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|+++.. .|.+++++||.
T Consensus 159 llDEP------------------------------------------t~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~ 195 (214)
T cd03292 159 IADEP------------------------------------------TGNLDPDTTWEIMNLLKKINK-AGTTVVVATHA 195 (214)
T ss_pred EEeCC------------------------------------------CCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 77775 346777888899999999864 58999999954
No 76
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.84 E-value=1.8e-20 Score=178.10 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=109.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........+.++.++.+.. .+.
T Consensus 15 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (242)
T TIGR03411 15 FKALNDLSLYVDPG---ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL-FGGTDLTGLPEHQIARAGIGRKFQKPTVFE 90 (242)
T ss_pred eEEeeeeeEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE-ECCeecCCCCHHHHHhcCeeEeccccccCC
Confidence 35899999999999 99999999999999999999999999999976 55555433222112222333333322 111
Q ss_pred h--hhhhccCCCCCCchhhH--H-----HHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 82 N--LLRFALNQETLPHTMVM--L-----VVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 82 ~--Ll~~~l~~~~~~~~~v~--~-----~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
. +..+...... ....+. + ..+......+++.++. ...+++.+..| |+||+||++||||+..++..++
T Consensus 91 ~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~Ge~qrv~laral~~~p~~ll 166 (242)
T TIGR03411 91 NLTVFENLELALP-RDKSVFASLFFRLSAEEKDRIEEVLETIGL-ADEADRLAGLL--SHGQKQWLEIGMLLMQDPKLLL 166 (242)
T ss_pred CCCHHHHHHHhhh-cccccccccccccHHHHHHHHHHHHHHcCC-chhhcCChhhC--CHHHHHHHHHHHHHhcCCCEEE
Confidence 1 1100000000 000000 0 0000001122222222 12334444445 9999999999999998777777
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||| +.++|.+..+.+.+.|+.++. +.+++++||.
T Consensus 167 lDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~ 201 (242)
T TIGR03411 167 LDEP------------------------------------------VAGMTDEETEKTAELLKSLAG--KHSVVVVEHD 201 (242)
T ss_pred ecCC------------------------------------------ccCCCHHHHHHHHHHHHHHhc--CCEEEEEECC
Confidence 7775 346777888999999999864 6899999954
No 77
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.3e-20 Score=176.08 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=125.1
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecC--CCCccccceEEEEEecCcccc-
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVS--DEYREDHTRLGVWILDGEPAH- 80 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~--~~~~~~~~~l~i~~l~g~~~~- 80 (415)
++|+++||+|.+| +.++|+|+||||||||++++.|+..|+.|.+. +.+.+.. ......+.++++.+++.+.++
T Consensus 18 ~~l~~v~~~i~~G---e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~-~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 18 AALKDVSLEIEKG---ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL-VDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred eeeeeeEEEECCC---CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEE-ECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 6899999999999 99999999999999999999999999999974 4444433 112234567888887764432
Q ss_pred -hhh-hhhccCCCC--CCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 81 -SNL-LRFALNQET--LPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 81 -~~L-l~~~l~~~~--~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
..+ ...++...+ +....+. .+....++.+.. .+..++.+..| |||||||++||.+|..+|..+++|||
T Consensus 94 ~~tV~~evafg~~n~g~~~~e~~-----~rv~~~l~~vgl-~~~~~r~p~~L--SGGqkqRvaIA~vLa~~P~iliLDEP 165 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPREEIE-----ERVAEALELVGL-EELLDRPPFNL--SGGQKQRVAIAGVLAMGPEILLLDEP 165 (235)
T ss_pred cCcHHHHHhhchhhcCCCHHHHH-----HHHHHHHHHcCc-hhhccCCcccc--CCcceeeHHhhHHHHcCCCEEEEcCC
Confidence 111 011111110 1110000 001122333333 23345556656 99999999999999988888887776
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccH
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNC 236 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~ 236 (415)
+ .++|......+.+.++++..+.|.+++.+| +++
T Consensus 166 t------------------------------------------a~LD~~~~~~l~~~l~~L~~~~~~tii~~t----Hd~ 199 (235)
T COG1122 166 T------------------------------------------AGLDPKGRRELLELLKKLKEEGGKTIIIVT----HDL 199 (235)
T ss_pred C------------------------------------------CCCCHHHHHHHHHHHHHHHhcCCCeEEEEe----CcH
Confidence 4 466778889999999999998899999998 666
Q ss_pred HHHHHHH
Q psy13975 237 DLLYKYL 243 (415)
Q Consensus 237 ~~l~~~l 243 (415)
+.+..|.
T Consensus 200 ~~~~~~a 206 (235)
T COG1122 200 ELVLEYA 206 (235)
T ss_pred HHHHhhC
Confidence 6666655
No 78
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.5e-20 Score=177.05 Aligned_cols=167 Identities=13% Similarity=0.090 Sum_probs=111.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++... ..++++...... .+..
T Consensus 14 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~----~~~~~~v~q~~~-~~~~ 84 (255)
T PRK11248 14 KPALEDINLTLESG---ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT-LDGKPVEGP----GAERGVVFQNEG-LLPW 84 (255)
T ss_pred eeeEeeeeEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCC----CCcEEEEeCCCc-cCCC
Confidence 46899999999999 99999999999999999999999999999976 555554321 123444432211 1111
Q ss_pred hhhhccCCCCCCchhhHHHH--hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVV--SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~--d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
+ .+.+....... .+. ....+++.++. ...+++.+..| |+||+||++||||+..++..+++|
T Consensus 85 ~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--SgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 85 R--------NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL-EGAEKRYIWQL--SGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred C--------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-hhHhhCChhhC--CHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1 11110000000 000 01123333333 13344555556 999999999999999777777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|.+..+.+.+.|+.++.+.|.+++++||.
T Consensus 154 EP------------------------------------------t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~ 188 (255)
T PRK11248 154 EP------------------------------------------FGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188 (255)
T ss_pred CC------------------------------------------CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 65 356777888999999999987779999999954
No 79
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.84 E-value=3.8e-20 Score=177.72 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=112.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++. ....++++...... .+.
T Consensus 25 ~~il~~isl~i~~G---e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~-~~g~~~~----~~~~~i~~v~q~~~-l~~- 94 (257)
T PRK11247 25 RTVLNQLDLHIPAG---QFVAVVGRSGCGKSTLLRLLAGLETPSAGELL-AGTAPLA----EAREDTRLMFQDAR-LLP- 94 (257)
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE-ECCEEHH----HhhCceEEEecCcc-CCC-
Confidence 46899999999999 99999999999999999999999999999975 4443321 11223444332211 111
Q ss_pred hhhhccCCCCCCchhhHHHHhcC-------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT-------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~-------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
...+...+.+. ....+++.++. ...+++.+..| |+||+||++||||+..++..+++||
T Consensus 95 ------------~~tv~enl~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--SgGqkqrl~laraL~~~p~lllLDE 159 (257)
T PRK11247 95 ------------WKKVIDNVGLGLKGQWRDAALQALAAVGL-ADRANEWPAAL--SGGQKQRVALARALIHRPGLLLLDE 159 (257)
T ss_pred ------------CCcHHHHHHhcccchHHHHHHHHHHHcCC-hhHhcCChhhC--CHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11111111110 11233444444 24445566666 9999999999999997777777776
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
| +.++|....+.+.+.|++++.+.|.+++++||.
T Consensus 160 P------------------------------------------t~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 160 P------------------------------------------LGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred C------------------------------------------CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5 356777888899999999988789999999954
No 80
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2e-20 Score=174.05 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=109.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|++. +.+.++.. ....++++. .+.. .+.
T Consensus 13 ~~~l~~v~~~i~~G---~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~---~~~~~i~~~--~q~~~~~~ 83 (210)
T cd03269 13 VTALDDISFSVEKG---EIFGLLGPNGAGKTTTIRMILGIILPDSGEVL-FDGKPLDI---AARNRIGYL--PEERGLYP 83 (210)
T ss_pred EEEEeeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCCchhH---HHHccEEEe--ccCCcCCc
Confidence 45899999999999 99999999999999999999999999999965 44433321 112234443 3222 111
Q ss_pred hhhhhccCCCCCCchhhHHH--HhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLV--VSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~--~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+...... ..... ...+++.++.+ ..+++.+..| |+||+||++||||+..++..+++
T Consensus 84 ~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrl~la~al~~~p~~lll 152 (210)
T cd03269 84 KM--------KVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEEL--SKGNQQKVQFIAAVIHDPELLIL 152 (210)
T ss_pred CC--------cHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 1111110000 00000 01223333332 3344555556 99999999999999987777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+..+.+.+.|+.++.+ |.+++++||.
T Consensus 153 DEP------------------------------------------~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~ 187 (210)
T cd03269 153 DEP------------------------------------------FSGLDPVNVELLKDVIRELARA-GKTVILSTHQ 187 (210)
T ss_pred eCC------------------------------------------CcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCC
Confidence 765 3577778889999999998754 8899999954
No 81
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=3.8e-20 Score=175.97 Aligned_cols=172 Identities=12% Similarity=0.101 Sum_probs=113.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... .+..+.++.+.+. +.
T Consensus 14 ~~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 88 (242)
T cd03295 14 KKAVNNLNLEIAKG---EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF-IDGEDIREQDPVE-LRRKIGYVIQQIGLFP 88 (242)
T ss_pred ceEeeeeEEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCeEcCcCChHH-hhcceEEEccCccccC
Confidence 46899999999999 99999999999999999999999999999965 5555543322211 1223334443321 11
Q ss_pred hhhhhccCCCCCCchhhHH-HH-hcC------CchhHHHHHHhHH-HHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 82 NLLRFALNQETLPHTMVML-VV-SMT------TPWNIIDELHNWA-SVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~-~~-d~~------~p~~~l~~l~~w~-~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
.+ .+.+..... .+ .+. ....+++.++... ...++.+..| |+||+||++||||+..++..++
T Consensus 89 ~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~L--S~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 89 HM--------TVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHEL--SGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred CC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhC--CHHHHHHHHHHHHHhcCCCEEE
Confidence 11 111110000 00 000 0112233333311 1345556666 9999999999999997777777
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||| +.++|.+..+.+.+.|++++.+.|.+++++||.
T Consensus 159 lDEP------------------------------------------t~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 159 MDEP------------------------------------------FGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred ecCC------------------------------------------cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 7765 346777888899999999987779999999954
No 82
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.1e-20 Score=182.30 Aligned_cols=171 Identities=12% Similarity=0.120 Sum_probs=112.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-----ccccceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-----REDHTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-----~~~~~~l~i~~l~g~ 77 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.... ......+++......
T Consensus 20 ~~~l~~vsl~i~~G---e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~ 95 (287)
T PRK13641 20 KKGLDNISFELEEG---SFVALVGHTGSGKSTLMQHFNALLKPSSGTIT-IAGYHITPETGNKNLKKLRKKVSLVFQFPE 95 (287)
T ss_pred ccceeeeEEEEeCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEECccccccchHHHHHhceEEEEeChh
Confidence 46999999999999 99999999999999999999999999999976 5555553211 111223444433211
Q ss_pred -ccchhhhhhccCCCCCCchhhHHHH--hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 78 -PAHSNLLRFALNQETLPHTMVMLVV--SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 78 -~~~~~Ll~~~l~~~~~~~~~v~~~~--d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
..+ .+ .+.+...+... ... +...+++.++.+....++.+..| |+|||||++|||||..+|
T Consensus 96 ~~~~-~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L--SgGq~qrl~laral~~~p 164 (287)
T PRK13641 96 AQLF-EN--------TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFEL--SGGQMRRVAIAGVMAYEP 164 (287)
T ss_pred hhhc-cc--------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccC--CHHHHHHHHHHHHHHcCC
Confidence 111 00 00110000000 000 01123344443222344555555 999999999999999888
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++|||+ .++|.+..+.+.+.|++++. .|.+++++
T Consensus 165 ~lLlLDEPt------------------------------------------~gLD~~~~~~l~~~l~~l~~-~g~tvliv 201 (287)
T PRK13641 165 EILCLDEPA------------------------------------------AGLDPEGRKEMMQLFKDYQK-AGHTVILV 201 (287)
T ss_pred CEEEEECCC------------------------------------------CCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 777777753 46777888899999999864 59999999
Q ss_pred ccC
Q psy13975 229 SAK 231 (415)
Q Consensus 229 S~k 231 (415)
||.
T Consensus 202 sH~ 204 (287)
T PRK13641 202 THN 204 (287)
T ss_pred eCC
Confidence 943
No 83
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.4e-20 Score=182.25 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=117.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC----c-cccceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY----R-EDHTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~----~-~~~~~l~i~~l~g~ 77 (415)
.++|+||||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++.... . ..+.++++..+...
T Consensus 20 ~~~L~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~ 95 (290)
T PRK13634 20 RRALYDVNVSIPSG---SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT-IGERVITAGKKNKKLKPLRKKVGIVFQFPE 95 (290)
T ss_pred ccceeeEEEEEcCC---CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-ECCEECccccccchHHHHHhhEEEEeeCch
Confidence 46999999999999 99999999999999999999999999999976 6666553210 1 11234555443321
Q ss_pred ccchhhhhhccCCCCCCchhhHH--HHhcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 78 PAHSNLLRFALNQETLPHTMVML--VVSMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~--~~d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
..+... .+.+...+. ...+. ....+++.++.+....++.+..| |+||+||++||||+..+|.
T Consensus 96 ~~l~~~--------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L--SgGq~qrv~lAraL~~~P~ 165 (290)
T PRK13634 96 HQLFEE--------TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFEL--SGGQMRRVAIAGVLAMEPE 165 (290)
T ss_pred hhhhhh--------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccC--CHHHHHHHHHHHHHHcCCC
Confidence 111000 000000000 00000 01122333333212234455555 9999999999999998887
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|......+.+.|+.++.++|.+++++|
T Consensus 166 llllDEPt------------------------------------------~~LD~~~~~~l~~~L~~l~~~~g~tviiit 203 (290)
T PRK13634 166 VLVLDEPT------------------------------------------AGLDPKGRKEMMEMFYKLHKEKGLTTVLVT 203 (290)
T ss_pred EEEEECCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 77777753 467777888999999999888899999999
Q ss_pred cCCcccHHHHHHH
Q psy13975 230 AKEDKNCDLLYKY 242 (415)
Q Consensus 230 ~k~~~n~~~l~~~ 242 (415)
| +++.+.++
T Consensus 204 H----d~~~~~~~ 212 (290)
T PRK13634 204 H----SMEDAARY 212 (290)
T ss_pred C----CHHHHHHh
Confidence 4 44444443
No 84
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.84 E-value=1.9e-20 Score=174.32 Aligned_cols=171 Identities=13% Similarity=0.155 Sum_probs=111.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-ccccceEEEEEecCccc-c
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-REDHTRLGVWILDGEPA-H 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-~~~~~~l~i~~l~g~~~-~ 80 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++.... .....+..+.++.+.+. +
T Consensus 13 ~~~l~~~s~~i~~G---~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (213)
T cd03262 13 FHVLKGIDLTVKKG---EVVVIIGPSGSGKSTLLRCINLLEEPDSGTII-IDGLKLTDDKKNINELRQKVGMVFQQFNLF 88 (213)
T ss_pred eEeecCceEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEECCccchhHHHHHhcceEEecccccC
Confidence 46899999999999 99999999999999999999999999999976 5555543110 11111223333333221 1
Q ss_pred hhhhhhccCCCCCCchhhHHHH---hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVV---SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~---d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
..+ .+.+....... .+. ....+++.++.. ..+++.+..| |+||+||++||||+..++..+
T Consensus 89 ~~~--------t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrv~la~al~~~p~ll 157 (213)
T cd03262 89 PHL--------TVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQL--SGGQQQRVAIARALAMNPKVM 157 (213)
T ss_pred CCC--------cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCcccc--CHHHHHHHHHHHHHhcCCCEE
Confidence 111 11110000000 000 011233333332 3455556656 999999999999999877777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| ..++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 158 llDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~ 194 (213)
T cd03262 158 LFDEP------------------------------------------TSALDPELVGEVLDVMKDLAE-EGMTMVVVTHE 194 (213)
T ss_pred EEeCC------------------------------------------ccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 77775 346777888899999999985 58899999954
No 85
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.84 E-value=2.7e-20 Score=172.23 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=110.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........+++++ .+...+
T Consensus 13 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~~--~q~~~~-- 84 (201)
T cd03231 13 RALFSGLSFTLAAG---EALQVTGPNGSGKTTLLRILAGLSPPLAGRVL-LNGGPLDFQRDSIARGLLYL--GHAPGI-- 84 (201)
T ss_pred ceeeccceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEecccccHHhhhheEEe--cccccc--
Confidence 45899999999999 99999999999999999999999999999976 44444332111112233333 322211
Q ss_pred hhhhccCCCCCCchhhHHHHhc-----C--CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM-----T--TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~-----~--~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
+....+...+.+ . ....+++.++.. ...++.+..| |+||+||++||||+..++..+++||
T Consensus 85 ----------~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrl~laral~~~p~llllDE 151 (201)
T cd03231 85 ----------KTTLSVLENLRFWHADHSDEQVEEALARVGLN-GFEDRPVAQL--SAGQQRRVALARLLLSGRPLWILDE 151 (201)
T ss_pred ----------CCCcCHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCchhhC--CHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 001111111100 0 011233443332 3344455555 9999999999999997777777776
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
| +.++|.+..+.+.+.|++++. .|.+++++||..
T Consensus 152 P------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~ 185 (201)
T cd03231 152 P------------------------------------------TTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQD 185 (201)
T ss_pred C------------------------------------------CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCc
Confidence 5 357777888899999999875 488999999654
No 86
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.84 E-value=2.2e-20 Score=175.77 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=113.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++...... ...++++. .+.+.+
T Consensus 20 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~--~q~~~l- 92 (225)
T PRK10247 20 AKILNNISFSLRAG---EFKLITGPSGCGKSTLLKIVASLISPTSGTLL-FEGEDISTLKPEIYRQQVSYC--AQTPTL- 92 (225)
T ss_pred ceeeeccEEEEcCC---CEEEEECCCCCCHHHHHHHHhcccCCCCCeEE-ECCEEcCcCCHHHHHhccEEE--eccccc-
Confidence 46899999999999 99999999999999999999999999999976 555444322211 12234433 332211
Q ss_pred hhhhhccCCCCCCchhhH-HHH-hcC----CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 82 NLLRFALNQETLPHTMVM-LVV-SMT----TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~-~~~-d~~----~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
.+..+.+...+ ..+ ... ....+++.++.+...+++.+..| |+||+||++||||+..++..+++||
T Consensus 93 -------~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--S~G~~qrv~laral~~~p~llllDE 163 (225)
T PRK10247 93 -------FGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAEL--SGGEKQRISLIRNLQFMPKVLLLDE 163 (225)
T ss_pred -------ccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccC--CHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 00011110000 000 000 01123333333212344555555 9999999999999998777777776
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
| +.++|....+.+.+.|++++.+.|.+++++||.
T Consensus 164 P------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 164 I------------------------------------------TSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred C------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 5 356777888999999999988889999999955
No 87
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.84 E-value=3.4e-20 Score=177.31 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=112.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC----------cc--ccceEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY----------RE--DHTRLG 70 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~----------~~--~~~~l~ 70 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|+|+..|++|.+. +.+.++.... .. ...+..
T Consensus 13 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (252)
T TIGR03005 13 LTVLDGLNFSVAAG---EKVALIGPSGSGKSTILRILMTLEPIDEGQIQ-VEGEQLYHMPGRNGPLVPADEKHLRQMRNK 88 (252)
T ss_pred eeEEeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEccccccccccccccchhHHHHHhhC
Confidence 46899999999999 99999999999999999999999999999965 5555543211 00 011222
Q ss_pred EEEecCcc-cchhhhhhccCCCCCCchhhHHHH-h--cC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHH
Q psy13975 71 VWILDGEP-AHSNLLRFALNQETLPHTMVMLVV-S--MT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140 (415)
Q Consensus 71 i~~l~g~~-~~~~Ll~~~l~~~~~~~~~v~~~~-d--~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~L 140 (415)
+.++.+.. .+..+ .+.+....... . .. ....+++.++.. ..+++.+..| |+||+||++|
T Consensus 89 i~~v~q~~~~~~~~--------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~L--S~G~~qrv~l 157 (252)
T TIGR03005 89 IGMVFQSFNLFPHK--------TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQL--SGGQQQRVAI 157 (252)
T ss_pred eEEEecCcccCCCC--------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhc--CHHHHHHHHH
Confidence 33333322 11111 11000000000 0 00 011233333332 3445555556 9999999999
Q ss_pred HHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH
Q psy13975 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK 220 (415)
Q Consensus 141 ArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~ 220 (415)
|||+..++..+++||| +.++|.+....+.+.|++++.+
T Consensus 158 aral~~~p~llllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~~ 195 (252)
T TIGR03005 158 ARALAMRPKVMLFDEV------------------------------------------TSALDPELVGEVLNVIRRLASE 195 (252)
T ss_pred HHHHHcCCCEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHHh
Confidence 9999987777777775 3466777788899999999887
Q ss_pred hCCeEEEeccC
Q psy13975 221 FGAGLFYTSAK 231 (415)
Q Consensus 221 ~Gasli~tS~k 231 (415)
.|.+++++||.
T Consensus 196 ~~~tiiivsH~ 206 (252)
T TIGR03005 196 HDLTMLLVTHE 206 (252)
T ss_pred cCcEEEEEeCC
Confidence 89999999954
No 88
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.2e-20 Score=181.49 Aligned_cols=171 Identities=11% Similarity=0.064 Sum_probs=113.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~~~ 82 (415)
.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++...... .+.++++........+..
T Consensus 21 ~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 21 YTLNDVSFHVKQG---EWLSIIGHNGSGKSTTVRLIDGLLEAESGQII-IDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred eeeeeeEEEEeCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 4899999999999 99999999999999999999999999999976 666555432211 123444443321101110
Q ss_pred hhhhccCCCCCCchhhHHHHh--cC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVVS--MT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d--~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
. .+.+...+.... +. ....+++.++. ...+++.+..| |+||+||++||||+..++..+++|
T Consensus 97 ~--------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~L--SgGq~qrv~lAral~~~p~lLlLD 165 (279)
T PRK13650 97 A--------TVEDDVAFGLENKGIPHEEMKERVNEALELVGM-QDFKEREPARL--SGGQKQRVAIAGAVAMRPKIIILD 165 (279)
T ss_pred c--------cHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC-HhHhhCCcccC--CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 0 010000000000 00 01123333333 23445555555 999999999999999888777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|......+.+.+++++.+.|.+++++||.
T Consensus 166 EP------------------------------------------t~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 166 EA------------------------------------------TSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred CC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 75 346777888899999999988789999999954
No 89
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=2.4e-20 Score=172.89 Aligned_cols=169 Identities=16% Similarity=0.178 Sum_probs=111.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++.........++++. .+... +.
T Consensus 14 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~-~~g~~~~~~~~~~~~~~~~~--~~~~~~~~ 87 (204)
T PRK13538 14 RILFSGLSFTLNAG---ELVQIEGPNGAGKTSLLRILAGLARPDAGEVL-WQGEPIRRQRDEYHQDLLYL--GHQPGIKT 87 (204)
T ss_pred EEEEecceEEECCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEEcccchHHhhhheEEe--CCccccCc
Confidence 35899999999999 99999999999999999999999999999976 55555432211112233333 22211 11
Q ss_pred hhhhhccCCCCCCchhhHHHHhc-----CCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSM-----TTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~-----~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
.+ ...+......... .....+++.++. ....++.+..| |+||+||++||||+..++..+++|||
T Consensus 88 ~~--------tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--S~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 88 EL--------TALENLRFYQRLHGPGDDEALWEALAQVGL-AGFEDVPVRQL--SAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred CC--------cHHHHHHHHHHhcCccHHHHHHHHHHHcCC-HHHhhCChhhc--CHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 1111000000000 001123444443 23445556666 99999999999999977777777765
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+++.|++++. .|.+++++||.
T Consensus 157 ------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~ 188 (204)
T PRK13538 157 ------------------------------------------FTAIDKQGVARLEALLAQHAE-QGGMVILTTHQ 188 (204)
T ss_pred ------------------------------------------CccCCHHHHHHHHHHHHHHHH-CCCEEEEEecC
Confidence 356777888899999999874 58899999964
No 90
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.3e-20 Score=179.75 Aligned_cols=178 Identities=15% Similarity=0.156 Sum_probs=115.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ..++++........+.
T Consensus 18 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (274)
T PRK13647 18 TKALKGLSLSIPEG---SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK-VMGREVNAENEKWVRSKVGLVFQDPDDQVF 93 (274)
T ss_pred CeeeeeEEEEEcCC---CEEEEECCCCCcHHHHHHHHhcCCCCCceEEE-ECCEECCCCCHHHHHhhEEEEecChhhhhc
Confidence 46899999999999 99999999999999999999999999999976 6665554322111 2334444332110110
Q ss_pred hhhhhccCCCCCCchhhHHHH--hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVV--SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~--d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.. .+.+...+... .+. ....+++.++. ...+++.+..| |+||+||++||||+..++..+++
T Consensus 94 ~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~L--SgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 94 SS--------TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-WDFRDKPPYHL--SYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred cC--------cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-HHHhcCChhhC--CHHHHHHHHHHHHHHcCCCEEEE
Confidence 00 00000000000 000 01122333333 23445556656 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCc
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKED 233 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~ 233 (415)
||| +.++|....+.+.+.|++++.+ |.+++++||
T Consensus 163 DEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~-g~tili~tH--- 196 (274)
T PRK13647 163 DEP------------------------------------------MAYLDPRGQETLMEILDRLHNQ-GKTVIVATH--- 196 (274)
T ss_pred ECC------------------------------------------CcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeC---
Confidence 765 3567778888999999999764 999999994
Q ss_pred ccHHHHHHH
Q psy13975 234 KNCDLLYKY 242 (415)
Q Consensus 234 ~n~~~l~~~ 242 (415)
+++.+.++
T Consensus 197 -~~~~~~~~ 204 (274)
T PRK13647 197 -DVDLAAEW 204 (274)
T ss_pred -CHHHHHHh
Confidence 44444443
No 91
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=2.3e-20 Score=172.49 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=109.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
.++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........+++++. +...+
T Consensus 14 ~~il~~~s~~i~~G---e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~-~~g~~~~~~~~~~~~~i~~~~--q~~~~-- 85 (200)
T PRK13540 14 QPLLQQISFHLPAG---GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL-FERQSIKKDLCTYQKQLCFVG--HRSGI-- 85 (200)
T ss_pred eeEEeeeeEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEE-ECCCccccCHHHHHhheEEec--ccccc--
Confidence 46899999999999 99999999999999999999999999999965 555444321111122344332 21111
Q ss_pred hhhhccCCCCCCchhhHHHHh----cC----CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVVS----MT----TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d----~~----~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
+...++...+. .. ....+++.+.. ...+++.+..| |+||+||++||||+..++..+++|
T Consensus 86 ----------~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~~rv~laral~~~p~~lilD 152 (200)
T PRK13540 86 ----------NPYLTLRENCLYDIHFSPGAVGITELCRLFSL-EHLIDYPCGLL--SSGQKRQVALLRLWMSKAKLWLLD 152 (200)
T ss_pred ----------CcCCCHHHHHHHHHhcCcchHHHHHHHHHcCC-chhhhCChhhc--CHHHHHHHHHHHHHhcCCCEEEEe
Confidence 01111111100 00 01123333322 12234444555 999999999999999877777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
|| ..++|.+..+.+.+.|++++. .|.+++++||..
T Consensus 153 EP------------------------------------------~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~ 187 (200)
T PRK13540 153 EP------------------------------------------LVALDELSLLTIITKIQEHRA-KGGAVLLTSHQD 187 (200)
T ss_pred CC------------------------------------------CcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCc
Confidence 65 356777888999999999854 589999999764
No 92
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.4e-20 Score=178.77 Aligned_cols=179 Identities=16% Similarity=0.061 Sum_probs=111.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... .+..+.++.+.. .+.
T Consensus 24 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~-~~~~i~~v~q~~~~~~ 98 (265)
T PRK10575 24 RTLLHPLSLTFPAG---KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL-LDAQPLESWSSKA-FARKVAYLPQQLPAAE 98 (265)
T ss_pred EEEEeeeeeEEcCC---CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE-ECCEehhhCCHHH-HhhheEEeccCCCCCC
Confidence 36899999999999 99999999999999999999999999999976 5555543222111 112233333321 111
Q ss_pred --hhhhhccCC-CCCCch-hhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 82 --NLLRFALNQ-ETLPHT-MVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 82 --~Ll~~~l~~-~~~~~~-~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
.+..+.... ...... ......+....+.+++.++. ...+++.+..| |+||+||++||||+..++..+++|||
T Consensus 99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrv~laral~~~p~lllLDEP- 174 (265)
T PRK10575 99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL-KPLAHRLVDSL--SGGERQRAWIAMLVAQDSRCLLLDEP- 174 (265)
T ss_pred CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-HHHhcCCcccC--CHHHHHHHHHHHHHhcCCCEEEEcCC-
Confidence 111111000 000000 00000000001122333322 22334445555 99999999999999987777777775
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|+.++.+.|.+++++||.
T Consensus 175 -----------------------------------------t~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 175 -----------------------------------------TSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred -----------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 346777888899999999987779999999954
No 93
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.84 E-value=4.3e-20 Score=175.08 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=110.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.+..........+++++.......+..
T Consensus 34 ~~il~~vs~~i~~G---e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 34 VEALKGISFTIEKG---EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR-VAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred eeeeeceeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCcCCCceEEE-ECCEEccccchhhcccEEEEcCCccccCCC
Confidence 36899999999999 99999999999999999999999999999976 444433221111122333332111111111
Q ss_pred hhhhccCCCCCCchhhHHHHhcC--Cch-------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT--TPW-------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~--~p~-------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
+ ...+...+ ...+. ..+ .+++.+.. .+.++..+..| |+||+||+.||||+..++..+++
T Consensus 110 ~--------tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--S~G~~qrl~la~al~~~p~llll 177 (236)
T cd03267 110 L--------PVIDSFYL-LAAIYDLPPARFKKRLDELSELLDL-EELLDTPVRQL--SLGQRMRAEIAAALLHEPEILFL 177 (236)
T ss_pred C--------cHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHcCC-hhHhcCChhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 11111000 00000 011 12222222 12334455555 99999999999999987777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+..+.+.+.|++++.+.|.+++++||.
T Consensus 178 DEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 213 (236)
T cd03267 178 DEP------------------------------------------TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213 (236)
T ss_pred cCC------------------------------------------CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 765 357778889999999999987778999999954
No 94
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.84 E-value=4.3e-20 Score=172.92 Aligned_cols=168 Identities=17% Similarity=0.109 Sum_probs=109.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........++++. .+... +.
T Consensus 15 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~i~~v--~q~~~~~~ 88 (220)
T cd03263 15 KPAVDDLSLNVYKG---EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY-INGYSIRTDRKAARQSLGYC--PQFDALFD 88 (220)
T ss_pred ceeecceEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEecccchHHHhhhEEEe--cCcCCccc
Confidence 56899999999999 99999999999999999999999999999976 55555432211112234443 33221 11
Q ss_pred hhhhhccCCCCCCchhhHHHH--hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVV--SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~--d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+...+... .+. ..+.+++.++. ...+++.+..| |+||+||++||||+..++..+++
T Consensus 89 ~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 89 EL--------TVREHLRFYARLKGLPKSEIKEEVELLLRVLGL-TDKANKRARTL--SGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHhChhhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 11110000000 000 01123333333 23445555656 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|....+.+.+.|+.++. +.+++++||.
T Consensus 158 DEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~ 191 (220)
T cd03263 158 DEP------------------------------------------TSGLDPASRRAIWDLILEVRK--GRSIILTTHS 191 (220)
T ss_pred CCC------------------------------------------CCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCC
Confidence 765 346677778889999999864 5899999954
No 95
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.84 E-value=3.1e-20 Score=171.27 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=111.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++..........+++ +.+... +.
T Consensus 13 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~--~~q~~~~~~ 86 (198)
T TIGR01189 13 RMLFEGLSFTLNAG---EALQVTGPNGIGKTTLLRILAGLLRPDSGEVR-WNGTALAEQRDEPHRNILY--LGHLPGLKP 86 (198)
T ss_pred EEEEeeeeEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCccEEE-ECCEEcccchHHhhhheEE--eccCccccc
Confidence 46899999999999 99999999999999999999999999999966 5555543321111123333 332221 11
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCC-----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTT-----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~-----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
.+ .+.+.... ...... ...+++.++. ...+++.+..| |+||+||++||||+..++..+++|||
T Consensus 87 ~~--------tv~~~l~~-~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~la~al~~~p~llllDEP 154 (198)
T TIGR01189 87 EL--------SALENLHF-WAAIHGGAQRTIEDALAAVGL-TGFEDLPAAQL--SAGQQRRLALARLWLSRAPLWILDEP 154 (198)
T ss_pred CC--------cHHHHHHH-HHHHcCCcHHHHHHHHHHcCC-HHHhcCChhhc--CHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 11110000 001100 1123333333 23345556666 99999999999999987777777775
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+.++|.+..+.+.+.|++++. .|.+++++||..
T Consensus 155 ------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~ 187 (198)
T TIGR01189 155 ------------------------------------------TTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQD 187 (198)
T ss_pred ------------------------------------------CcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEccc
Confidence 346677788889999999864 588999999865
No 96
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.8e-20 Score=181.36 Aligned_cols=180 Identities=13% Similarity=0.129 Sum_probs=117.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc-----cccceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR-----EDHTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~-----~~~~~l~i~~l~g~ 77 (415)
+++|+||||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++..... ..+.++++......
T Consensus 20 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~ 95 (286)
T PRK13646 20 HQAIHDVNTEFEQG---KYYAIVGQTGSGKSTLIQNINALLKPTTGTVT-VDDITITHKTKDKYIRPVRKRIGMVFQFPE 95 (286)
T ss_pred cCceeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEECccccccchHHHHHhheEEEecChH
Confidence 36999999999999 99999999999999999999999999999976 66655532111 11234555544321
Q ss_pred -ccch-hhhhhccCCCCCCchhhHHHHhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 78 -PAHS-NLLRFALNQETLPHTMVMLVVSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 78 -~~~~-~Ll~~~l~~~~~~~~~v~~~~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
..+. .+....... .....+.. ...+++.++......++.+..| |+||+||++||||+..++.
T Consensus 96 ~~l~~~tv~e~i~~~--------~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L--SgGq~qrv~laraL~~~p~ 165 (286)
T PRK13646 96 SQLFEDTVEREIIFG--------PKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQM--SGGQMRKIAIVSILAMNPD 165 (286)
T ss_pred hccchhhHHHHHHhh--------HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC--CHHHHHHHHHHHHHHhCCC
Confidence 1111 111100000 00000000 0122333332112233445555 9999999999999998777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|......+++.++++..+.|.+++++|
T Consensus 166 illlDEP------------------------------------------t~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt 203 (286)
T PRK13646 166 IIVLDEP------------------------------------------TAGLDPQSKRQVMRLLKSLQTDENKTIILVS 203 (286)
T ss_pred EEEEECC------------------------------------------cccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 7777765 3567778889999999999877899999999
Q ss_pred cCCcccHHHHHHH
Q psy13975 230 AKEDKNCDLLYKY 242 (415)
Q Consensus 230 ~k~~~n~~~l~~~ 242 (415)
++++.+.++
T Consensus 204 ----H~~~~~~~~ 212 (286)
T PRK13646 204 ----HDMNEVARY 212 (286)
T ss_pred ----cCHHHHHHh
Confidence 555544444
No 97
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.9e-20 Score=175.91 Aligned_cols=174 Identities=13% Similarity=0.099 Sum_probs=112.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc-h
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-S 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-~ 81 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... .+..+.++.+.+.+ .
T Consensus 16 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~-~~~~i~~~~q~~~~~~ 90 (241)
T PRK14250 16 KEILKDISVKFEGG---AIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL-IDGVDIKTIDVID-LRRKIGMVFQQPHLFE 90 (241)
T ss_pred eeeeeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEEhhhcChHH-hhhcEEEEecCchhch
Confidence 46899999999999 99999999999999999999999999999976 5555553221111 12234444433211 0
Q ss_pred -hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhc
Q psy13975 82 -NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFY 160 (415)
Q Consensus 82 -~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~ 160 (415)
.+............. ...+...+++.++.-....++.+..| |+||+||++||||+..++..+++|||
T Consensus 91 ~tv~e~l~~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~~L--S~G~~qrl~la~al~~~p~llllDEP---- 158 (241)
T PRK14250 91 GTVKDNIEYGPMLKGE------KNVDVEYYLSIVGLNKEYATRDVKNL--SGGEAQRVSIARTLANNPEVLLLDEP---- 158 (241)
T ss_pred hhHHHHHhcchhhcCc------HHHHHHHHHHHcCCCHHHhhCCcccC--CHHHHHHHHHHHHHhcCCCEEEEeCC----
Confidence 111100000000000 00001122333332112334455555 99999999999999988877777775
Q ss_pred cccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 161 LFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 161 ~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|+.++.++|.+++++||.
T Consensus 159 --------------------------------------t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 159 --------------------------------------TSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred --------------------------------------cccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 346777778899999999887779999999943
No 98
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.9e-20 Score=179.27 Aligned_cols=188 Identities=12% Similarity=0.107 Sum_probs=116.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAH- 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~- 80 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. |.+.++....... ..++++.........
T Consensus 20 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 95 (265)
T PRK10253 20 YTVAENLTVEIPDG---HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVW-LDGEHIQHYASKEVARRIGLLAQNATTPGD 95 (265)
T ss_pred EEEeeecceEECCC---CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE-ECCEEhhhCCHHHHhhheEEeeccCcCCCC
Confidence 35899999999999 99999999999999999999999999999965 5555543222111 223444333221111
Q ss_pred hhhhhhccCC-CCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 81 SNLLRFALNQ-ETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 81 ~~Ll~~~l~~-~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
..+..+.... ....... ..-..+....+.+++.++. .+.+++.+..| |+||+||++||||+..++..+++|||
T Consensus 96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~Gq~qrv~laral~~~p~llllDEP-- 170 (265)
T PRK10253 96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI-THLADQSVDTL--SGGQRQRAWIAMVLAQETAIMLLDEP-- 170 (265)
T ss_pred CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-HHHhcCCcccC--ChHHHHHHHHHHHHhcCCCEEEEeCc--
Confidence 0111111000 0000000 0000000001123333333 23445555556 99999999999999977777777765
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHH
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDL 238 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~ 238 (415)
+.++|.+..+.+.+.|+.++.+.|.+++++| ++++.
T Consensus 171 ----------------------------------------t~gLD~~~~~~l~~~L~~l~~~~~~tiii~t----H~~~~ 206 (265)
T PRK10253 171 ----------------------------------------TTWLDISHQIDLLELLSELNREKGYTLAAVL----HDLNQ 206 (265)
T ss_pred ----------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEe----CCHHH
Confidence 3577778899999999999877799999999 44444
Q ss_pred HHHHH
Q psy13975 239 LYKYL 243 (415)
Q Consensus 239 l~~~l 243 (415)
+.++.
T Consensus 207 ~~~~~ 211 (265)
T PRK10253 207 ACRYA 211 (265)
T ss_pred HHHhC
Confidence 44433
No 99
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.9e-20 Score=175.69 Aligned_cols=177 Identities=16% Similarity=0.099 Sum_probs=110.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++.........+..+.++.+... +.
T Consensus 16 ~~~l~~~sl~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T PRK10895 16 RRVVEDVSLTVNSG---EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII-IDDEDISLLPLHARARRGIGYLPQEASIFR 91 (241)
T ss_pred EEEEeeeeEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCHHHHHHhCeEEeccCCcccc
Confidence 36899999999999 99999999999999999999999999999976 555554332211212223444443321 11
Q ss_pred --hhhhhccCCCCCC-chhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 82 --NLLRFALNQETLP-HTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 82 --~Ll~~~l~~~~~~-~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
.+.........+. ...- . ........+++.++. ....++.+..| |+||+||++||||+..++..+++|||
T Consensus 92 ~~tv~enl~~~~~~~~~~~~-~-~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~laral~~~p~llllDEP-- 164 (241)
T PRK10895 92 RLSVYDNLMAVLQIRDDLSA-E-QREDRANELMEEFHI-EHLRDSMGQSL--SGGERRRVEIARALAANPKFILLDEP-- 164 (241)
T ss_pred cCcHHHHHhhhhhcccccCH-H-HHHHHHHHHHHHcCC-HHHhhcchhhC--CHHHHHHHHHHHHHhcCCCEEEEcCC--
Confidence 1111000000000 0000 0 000001122333222 12334455555 99999999999999987777777775
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.++.++ +.|.+++++||.
T Consensus 165 ----------------------------------------t~~LD~~~~~~l~~~l~~~~-~~g~tiii~sH~ 196 (241)
T PRK10895 165 ----------------------------------------FAGVDPISVIDIKRIIEHLR-DSGLGVLITDHN 196 (241)
T ss_pred ----------------------------------------cccCCHHHHHHHHHHHHHHH-hcCCEEEEEEcC
Confidence 34667777888888898886 468999999954
No 100
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=6.4e-20 Score=166.50 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=104.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc-cccceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR-EDHTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~-~~~~~l~i~~l~g~~~~~ 81 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|++. +.+.++..... ....+..+.++.+.+.
T Consensus 13 ~~~l~~i~~~i~~G---~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q~~~-- 86 (178)
T cd03229 13 KTVLNDVSLNIEAG---EIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL-IDGEDLTDLEDELPPLRRRIGMVFQDFA-- 86 (178)
T ss_pred eEEEeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEccccchhHHHHhhcEEEEecCCc--
Confidence 46899999999999 99999999999999999999999999999976 55555433210 1111122322222111
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhcc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYL 161 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~ 161 (415)
.+....+ .+.+..+ +|+||+||+.||||+..++..+++|||
T Consensus 87 ----------~~~~~t~------------~~~l~~~------------lS~G~~qr~~la~al~~~p~llilDEP----- 127 (178)
T cd03229 87 ----------LFPHLTV------------LENIALG------------LSGGQQQRVALARALAMDPDVLLLDEP----- 127 (178)
T ss_pred ----------cCCCCCH------------HHheeec------------CCHHHHHHHHHHHHHHCCCCEEEEeCC-----
Confidence 1111111 1111110 499999999999999987777777765
Q ss_pred ccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 162 FYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 162 ~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
..++|....+.+.+.|++++.++|.+++++||.
T Consensus 128 -------------------------------------~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 160 (178)
T cd03229 128 -------------------------------------TSALDPITRREVRALLKSLQAQLGITVVLVTHD 160 (178)
T ss_pred -------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 357777889999999999988778999999954
No 101
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.5e-20 Score=183.06 Aligned_cols=171 Identities=12% Similarity=0.120 Sum_probs=115.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc----ccceEEEEEecCccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE----DHTRLGVWILDGEPA 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~----~~~~l~i~~l~g~~~ 79 (415)
.+|+||||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. |.+.++...... .+.++++..++....
T Consensus 29 ~~l~~vsl~i~~G---e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~-~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 29 KALDGVSFTLERG---KTLAVVGESGCGKSTLARLLTMIETPTGGELY-YQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eEEeeeEEEECCC---CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEE-ECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 5899999999999 99999999999999999999999999999976 666666443221 123455554432111
Q ss_pred chhhhhhccCCC-CCCchhhHHHH----hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 80 HSNLLRFALNQE-TLPHTMVMLVV----SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 80 ~~~Ll~~~l~~~-~~~~~~v~~~~----d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
| .+. .+.. .+...+ .+.. ...+++.++.....+++.+..| |+||+||++||||+..++
T Consensus 105 ---l-----~p~~~v~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~L--SgGq~QRv~iArAL~~~P 173 (327)
T PRK11308 105 ---L-----NPRKKVGQ-ILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMF--SGGQRQRIAIARALMLDP 173 (327)
T ss_pred ---c-----CCccCHHH-HHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccC--CHHHHHHHHHHHHHHcCC
Confidence 1 111 1110 010000 0111 1122333333212344455555 999999999999999888
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++|||+ .++|....+.|++.|++++.++|.+++++
T Consensus 174 ~lLilDEPt------------------------------------------s~LD~~~~~~i~~lL~~l~~~~g~til~i 211 (327)
T PRK11308 174 DVVVADEPV------------------------------------------SALDVSVQAQVLNLMMDLQQELGLSYVFI 211 (327)
T ss_pred CEEEEECCC------------------------------------------ccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 777777763 46666778899999999998899999999
Q ss_pred ccC
Q psy13975 229 SAK 231 (415)
Q Consensus 229 S~k 231 (415)
||.
T Consensus 212 THd 214 (327)
T PRK11308 212 SHD 214 (327)
T ss_pred eCC
Confidence 943
No 102
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.1e-20 Score=187.34 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=114.6
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-----cceEEEEEecCcc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-----HTRLGVWILDGEP 78 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-----~~~l~i~~l~g~~ 78 (415)
.+|+++||+|++| ++++|+|+||||||||+++|+|+.+|++|.++ +.+.++....... ..++++..+...
T Consensus 42 ~~L~~isl~i~~G---ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~-i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~- 116 (400)
T PRK10070 42 LGVKDASLAIEEG---EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL-IDGVDIAKISDAELREVRRKKIAMVFQSFA- 116 (400)
T ss_pred EEEEeEEEEEcCC---CEEEEECCCCchHHHHHHHHHcCCCCCCCEEE-ECCEECCcCCHHHHHHHHhCCEEEEECCCc-
Confidence 3799999999999 99999999999999999999999999999976 6666654332211 124555433211
Q ss_pred cchhhhhhccCCCCCCchhhHHHHh---cCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 79 AHSNLLRFALNQETLPHTMVMLVVS---MTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 79 ~~~~Ll~~~l~~~~~~~~~v~~~~d---~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.|..+ ++.+... .... +.. ...+++.++.. ..+++.+..| |+||+||++|||||..++.
T Consensus 117 l~~~~--------Tv~enl~-~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~L--SgGq~QRv~LArAL~~~P~ 184 (400)
T PRK10070 117 LMPHM--------TVLDNTA-FGMELAGINAEERREKALDALRQVGLE-NYAHSYPDEL--SGGMRQRVGLARALAINPD 184 (400)
T ss_pred CCCCC--------CHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccC--CHHHHHHHHHHHHHhcCCC
Confidence 11111 1111100 0000 110 11233333331 3445556666 9999999999999998777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| ..++|......+++.|++++.+.|.+++++|
T Consensus 185 iLLLDEP------------------------------------------ts~LD~~~r~~l~~~L~~l~~~~g~TIIivT 222 (400)
T PRK10070 185 ILLMDEA------------------------------------------FSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222 (400)
T ss_pred EEEEECC------------------------------------------CccCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7777775 3467778888999999999887899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 223 Hd 224 (400)
T PRK10070 223 HD 224 (400)
T ss_pred CC
Confidence 43
No 103
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=8.8e-20 Score=169.78 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=109.4
Q ss_pred eeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccch--hhh
Q psy13975 7 DVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS--NLL 84 (415)
Q Consensus 7 ~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~--~Ll 84 (415)
.++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ....+++...... .+. .+.
T Consensus 15 ~~is~~i~~G---e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~-~~g~~~~~~~~-~~~~i~~~~q~~~-~~~~~tv~ 88 (211)
T cd03298 15 MHFDLTFAQG---EITAIVGPSGSGKSTLLNLIAGFETPQSGRVL-INGVDVTAAPP-ADRPVSMLFQENN-LFAHLTVE 88 (211)
T ss_pred cceEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEEcCcCCH-hHccEEEEecccc-cCCCCcHH
Confidence 3999999999 99999999999999999999999999999976 55555533211 1233444433221 111 111
Q ss_pred hhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccC
Q psy13975 85 RFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYS 164 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~ 164 (415)
.+...... .... ....+......+++.++. ...+++.+..| |+||+||++||||+..++..+++|||
T Consensus 89 enl~~~~~-~~~~-~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~ia~al~~~p~llllDEP-------- 155 (211)
T cd03298 89 QNVGLGLS-PGLK-LTAEDRQAIEVALARVGL-AGLEKRLPGEL--SGGERQRVALARVLVRDKPVLLLDEP-------- 155 (211)
T ss_pred HHHhcccc-cccC-ccHHHHHHHHHHHHHcCC-HHHHhCCcccC--CHHHHHHHHHHHHHhcCCCEEEEcCC--------
Confidence 11100000 0000 000000001122333332 23344455555 99999999999999977777777765
Q ss_pred ccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 165 SVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 165 ~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++.++|++++++||.
T Consensus 156 ----------------------------------~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 188 (211)
T cd03298 156 ----------------------------------FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188 (211)
T ss_pred ----------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356777888999999999988789999999953
No 104
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.6e-20 Score=179.99 Aligned_cols=178 Identities=14% Similarity=0.061 Sum_probs=114.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.++ +.+.++....... ..++++........+.
T Consensus 20 ~~~l~~vsl~i~~G---e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~-~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~ 95 (279)
T PRK13635 20 TYALKDVSFSVYEG---EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT-VGGMVLSEETVWDVRRQVGMVFQNPDNQFV 95 (279)
T ss_pred ccceeeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-ECCEECCcCcHHHHhhheEEEEeCHHHhcc
Confidence 46999999999999 99999999999999999999999999999976 6666654322211 2334444333211111
Q ss_pred --hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 --NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 --~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.+................. .......+++.++. ...+++.+..| |+||+||++||||+..++..+++|||
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~--~~~~~~~~l~~~gL-~~~~~~~~~~L--S~G~~qrv~laral~~~p~lllLDEP--- 167 (279)
T PRK13635 96 GATVQDDVAFGLENIGVPREE--MVERVDQALRQVGM-EDFLNREPHRL--SGGQKQRVAIAGVLALQPDIIILDEA--- 167 (279)
T ss_pred cccHHHHHhhhHhhCCCCHHH--HHHHHHHHHHHcCC-hhhhhCCcccC--CHHHHHHHHHHHHHHcCCCEEEEeCC---
Confidence 1111000000000000000 00000122333333 23445555555 99999999999999988877777775
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|......+.+.|++++.++|.+++++||.
T Consensus 168 ---------------------------------------t~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 168 ---------------------------------------TSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred ---------------------------------------cccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 356777888999999999988789999999954
No 105
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.83 E-value=6e-20 Score=177.31 Aligned_cols=172 Identities=13% Similarity=0.110 Sum_probs=111.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc---
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA--- 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~--- 79 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++...... ..+..+.++.+++.
T Consensus 26 ~~~l~~vsl~i~~G---e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~-~~~~~i~~v~q~~~~~~ 100 (267)
T PRK15112 26 VEAVKPLSFTLREG---QTLAIIGENGSGKSTLAKMLAGMIEPTSGELL-IDDHPLHFGDYS-YRSQRIRMIFQDPSTSL 100 (267)
T ss_pred cceeeeeeEEecCC---CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEE-ECCEECCCCchh-hHhccEEEEecCchhhc
Confidence 36999999999999 99999999999999999999999999999976 665555322111 11122333333321
Q ss_pred chhhhhhccCCCCCCchh-hHHHHh--cCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 80 HSNLLRFALNQETLPHTM-VMLVVS--MTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~-v~~~~d--~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
+..+ .+.... ...... +.. ...+++.++.-....+..+..| |+||+||++||||+..++..
T Consensus 101 ~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--S~G~~qrv~laral~~~p~l 170 (267)
T PRK15112 101 NPRQ--------RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHML--APGQKQRLGLARALILRPKV 170 (267)
T ss_pred Ccch--------hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhc--CHHHHHHHHHHHHHHhCCCE
Confidence 1100 000000 000000 000 0122233222011223344555 99999999999999988877
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++|||+ .++|.+..+.+.+.|++++.++|.+++++||
T Consensus 171 llLDEPt------------------------------------------~~LD~~~~~~l~~~l~~~~~~~g~tviivsH 208 (267)
T PRK15112 171 IIADEAL------------------------------------------ASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208 (267)
T ss_pred EEEcCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence 7777753 4677788899999999998878999999995
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 209 ~ 209 (267)
T PRK15112 209 H 209 (267)
T ss_pred C
Confidence 4
No 106
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.4e-20 Score=180.31 Aligned_cols=178 Identities=17% Similarity=0.168 Sum_probs=114.5
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCC----------------------
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDE---------------------- 61 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~---------------------- 61 (415)
++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.+....
T Consensus 21 ~~l~~vsl~i~~G---e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 21 KALDNVSVEINQG---EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE-WIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred cceeeeEEEEeCC---CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE-Eeceecccccccccccccccccccccccccc
Confidence 5999999999999 99999999999999999999999999999976 443332110
Q ss_pred --C-ccccceEEEEEecCcccchhhhhhccCCCCCCchhhHHH--HhcC------CchhHHHHHHhHHHHHHHHHhhhcC
Q psy13975 62 --Y-REDHTRLGVWILDGEPAHSNLLRFALNQETLPHTMVMLV--VSMT------TPWNIIDELHNWASVLQDHIDSLNI 130 (415)
Q Consensus 62 --~-~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~--~d~~------~p~~~l~~l~~w~~~l~~~~~~L~l 130 (415)
. ...+.++++..++....+-.. .+.+...+.. ..+. +...+++.++.....+++.+..|
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~--------tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L-- 166 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQ--------TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL-- 166 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccc--------cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhC--
Confidence 0 011234455444321111000 0000000000 0000 01123344333213345556666
Q ss_pred ChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHH
Q psy13975 131 GAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFV 210 (415)
Q Consensus 131 SgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i 210 (415)
|+||+||++|||++..++..+++||| +.++|....+.+
T Consensus 167 SgGqkqrvalA~aL~~~P~lLlLDEP------------------------------------------t~~LD~~~~~~l 204 (305)
T PRK13651 167 SGGQKRRVALAGILAMEPDFLVFDEP------------------------------------------TAGLDPQGVKEI 204 (305)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCC------------------------------------------CCCCCHHHHHHH
Confidence 99999999999999988877777775 346777888899
Q ss_pred HHHHHHHHHHhCCeEEEeccCCcccHHHHHHH
Q psy13975 211 QQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKY 242 (415)
Q Consensus 211 ~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~ 242 (415)
.+.|+.++ +.|.+++++| ++.+.+.++
T Consensus 205 ~~~l~~l~-~~g~tiiivt----Hd~~~~~~~ 231 (305)
T PRK13651 205 LEIFDNLN-KQGKTIILVT----HDLDNVLEW 231 (305)
T ss_pred HHHHHHHH-HCCCEEEEEe----eCHHHHHHh
Confidence 99999997 4699999999 444444443
No 107
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.83 E-value=1.6e-20 Score=201.51 Aligned_cols=180 Identities=16% Similarity=0.194 Sum_probs=123.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
.++|+|+||+|++| ++++|+|.||||||||+|.|+|++.|+.|.++ +++.|..+.+... +..++++.++...+..
T Consensus 486 ~~vL~~isL~I~~G---e~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~-~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g 561 (709)
T COG2274 486 PPVLEDLSLEIPPG---EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL-LDGVDLNDIDLASLRRQVGYVLQDPFLFSG 561 (709)
T ss_pred cchhhceeEEeCCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEeHHhcCHHHHHhheeEEcccchhhcC
Confidence 36999999999999 99999999999999999999999999999987 8888887765443 4455655444433444
Q ss_pred hhhh-hccCCCCCCchhhHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLR-FALNQETLPHTMVMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~-~~l~~~~~~~~~v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
++.. +.+.........++....+...+.++..+ ..+...+.+.-.. ||||||||++||||+..+|..+++||++|
T Consensus 562 SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~--LSGGQrQrlalARaLl~~P~ILlLDEaTS- 638 (709)
T COG2274 562 SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN--LSGGQRQRLALARALLSKPKILLLDEATS- 638 (709)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC--CCHHHHHHHHHHHHhccCCCEEEEeCccc-
Confidence 4422 22222222222333333333333333322 1111222233332 49999999999999999999888888755
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
.+|++-...|++.|++++ .|.++|+++|+.
T Consensus 639 -----------------------------------------aLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl 668 (709)
T COG2274 639 -----------------------------------------ALDPETEAIILQNLLQIL--QGRTVIIIAHRL 668 (709)
T ss_pred -----------------------------------------ccCHhHHHHHHHHHHHHh--cCCeEEEEEccc
Confidence 455566778889999986 478999998663
No 108
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.83 E-value=6.9e-20 Score=173.92 Aligned_cols=170 Identities=13% Similarity=0.096 Sum_probs=110.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc---cccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR---EDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~---~~~~~l~i~~l~g~~~ 79 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... .....+++...... .
T Consensus 14 ~~il~~~s~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q~~~-~ 88 (240)
T PRK09493 14 TQVLHNIDLNIDQG---EVVVIIGPSGSGKSTLLRCINKLEEITSGDLI-VDGLKVNDPKVDERLIRQEAGMVFQQFY-L 88 (240)
T ss_pred eEEeeeeeEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEECCcCChhHHHHhhceEEEecccc-c
Confidence 46899999999999 99999999999999999999999999999976 66655543111 11223444432211 1
Q ss_pred chhhhhhccCCCCCCchhhHHHHh---cC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVS---MT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d---~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
+..+ .+.+........ .. ....+++.++. ...+++.+..| |+||+||++||||+..++..
T Consensus 89 ~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--S~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 89 FPHL--------TALENVMFGPLRVRGASKEEAEKQARELLAKVGL-AERAHHYPSEL--SGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred CCCC--------cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-hHHHhcChhhc--CHHHHHHHHHHHHHhcCCCE
Confidence 1100 010000000000 00 01123333333 23344555555 99999999999999977777
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++||| +.++|.+..+.+.+.|+.++. .|.+++++||
T Consensus 158 lllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH 194 (240)
T PRK09493 158 MLFDEP------------------------------------------TSALDPELRHEVLKVMQDLAE-EGMTMVIVTH 194 (240)
T ss_pred EEEcCC------------------------------------------cccCCHHHHHHHHHHHHHHHH-cCCEEEEEeC
Confidence 777765 356777888899999999875 5899999995
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 195 ~ 195 (240)
T PRK09493 195 E 195 (240)
T ss_pred C
Confidence 4
No 109
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.83 E-value=4.4e-20 Score=178.00 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=112.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----cceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----HTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~~~l~i~~l~g~~ 78 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ...+++.......
T Consensus 24 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 24 APVLTNVSLSIEEG---ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS-FRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred eEEeeCceeEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 46899999999999 99999999999999999999999999999976 6665554322111 2234444332111
Q ss_pred cc-hhhhhhccCCCCCCchhhHHH--H-hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 79 AH-SNLLRFALNQETLPHTMVMLV--V-SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 79 ~~-~~Ll~~~l~~~~~~~~~v~~~--~-d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
.+ ..+ .+.+...... . .+.. ...+++.++.....+++.+..| |+||+||++||||+..++
T Consensus 100 ~~~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L--SgGe~qrv~laral~~~p 169 (265)
T TIGR02769 100 AVNPRM--------TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQL--SGGQLQRINIARALAVKP 169 (265)
T ss_pred hcCCCC--------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhC--CHHHHHHHHHHHHHhcCC
Confidence 11 101 1111000000 0 0110 1122233322112234445555 999999999999999777
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++||| +.++|.+..+.+.+.|++++.++|.+++++
T Consensus 170 ~illLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~g~tiiiv 207 (265)
T TIGR02769 170 KLIVLDEA------------------------------------------VSNLDMVLQAVILELLRKLQQAFGTAYLFI 207 (265)
T ss_pred CEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 77777765 346777788899999999987779999999
Q ss_pred ccC
Q psy13975 229 SAK 231 (415)
Q Consensus 229 S~k 231 (415)
||.
T Consensus 208 sH~ 210 (265)
T TIGR02769 208 THD 210 (265)
T ss_pred eCC
Confidence 943
No 110
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=7.3e-20 Score=177.62 Aligned_cols=171 Identities=12% Similarity=0.133 Sum_probs=112.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc-cccceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR-EDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~-~~~~~l~i~~l~g~~~~~~ 82 (415)
.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ....++++........+..
T Consensus 18 ~~l~~vsl~i~~G---e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 18 EALNNINFIAPRN---SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL-IRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred ceeeEeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 5899999999999 99999999999999999999999999999976 55555433211 1122344433221101100
Q ss_pred hhhhccCCCCCCchhhHHHH--hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVV--SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~--d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
. .+.+....... .+.. .+.+++.++. ...+++.+..| |+||+||++||||+..++..+++|
T Consensus 94 ~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~Gq~qrl~laraL~~~p~llilD 162 (277)
T PRK13652 94 P--------TVEQDIAFGPINLGLDEETVAHRVSSALHMLGL-EELRDRVPHHL--SGGEKKRVAIAGVIAMEPQVLVLD 162 (277)
T ss_pred c--------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC-hhHhcCCcccC--CHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0 00000000000 0100 1122333333 13344555555 999999999999999777777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|.+..+.+.+.+++++.++|.+++++||.
T Consensus 163 EP------------------------------------------t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 197 (277)
T PRK13652 163 EP------------------------------------------TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197 (277)
T ss_pred CC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 65 356777888899999999988789999999944
No 111
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.83 E-value=3.1e-20 Score=182.31 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=115.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+.+|+|+||+|++| ++++|+|+||||||||+++|+|+..|+.|.+. +.+.++.........++++ +.+.+ .+.
T Consensus 15 ~~~l~~is~~i~~G---ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~-i~g~~~~~~~~~~~~~ig~--~~q~~~l~~ 88 (301)
T TIGR03522 15 QNALDEVSFEAQKG---RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ-VCGEDVLQNPKEVQRNIGY--LPEHNPLYL 88 (301)
T ss_pred EEEEEEeEEEEeCC---eEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEcccChHHHHhceEE--ecCCCCCCC
Confidence 45899999999999 99999999999999999999999999999976 5555554321111233444 33322 111
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCc--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTP--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ ...+...+.......+ ..+++.++. ...+++.+..| |+||+||++||||+..+|..+++
T Consensus 89 ~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--S~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 89 DM--------YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL-RPEQHKKIGQL--SKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred CC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCchhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 1111110000000101 122333333 13345555655 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCc
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKED 233 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~ 233 (415)
||| +.++|.+..+.+.+.++.++ + +.+++++|
T Consensus 158 DEP------------------------------------------t~gLD~~~~~~l~~~l~~~~-~-~~tiii~s---- 189 (301)
T TIGR03522 158 DEP------------------------------------------TTGLDPNQLVEIRNVIKNIG-K-DKTIILST---- 189 (301)
T ss_pred cCC------------------------------------------cccCCHHHHHHHHHHHHHhc-C-CCEEEEEc----
Confidence 765 45777888999999999985 3 78999999
Q ss_pred ccHHHHHHHH
Q psy13975 234 KNCDLLYKYL 243 (415)
Q Consensus 234 ~n~~~l~~~l 243 (415)
+.++.+.++.
T Consensus 190 H~l~~~~~~~ 199 (301)
T TIGR03522 190 HIMQEVEAIC 199 (301)
T ss_pred CCHHHHHHhC
Confidence 4555444443
No 112
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.5e-20 Score=180.44 Aligned_cols=172 Identities=12% Similarity=0.114 Sum_probs=113.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc---cccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR---EDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~---~~~~~l~i~~l~g~~~ 79 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ....++++........
T Consensus 19 ~~~l~~vs~~i~~G---e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~-i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~ 94 (283)
T PRK13636 19 THALKGININIKKG---EVTAILGGNGAGKSTLFQNLNGILKPSSGRIL-FDGKPIDYSRKGLMKLRESVGMVFQDPDNQ 94 (283)
T ss_pred CeeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCccEEE-ECCEECCCCcchHHHHHhhEEEEecCcchh
Confidence 45999999999999 99999999999999999999999999999976 66655531111 1123445443322101
Q ss_pred chhhhhhccCCCCCCchhhHHH--HhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLV--VSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~--~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
+. ...+.+...... ..+.. ...+++.++. ....++.+..| |+||+||++||||+..+|..+
T Consensus 95 ~~--------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~L--S~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 95 LF--------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI-EHLKDKPTHCL--SFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred hc--------cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC-hhhhhCCcccC--CHHHHHHHHHHHHHHcCCCEE
Confidence 10 000111000000 00110 0122333333 23345555555 999999999999999777777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|++++.++|.+++++||.
T Consensus 164 ilDEP------------------------------------------t~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~ 201 (283)
T PRK13636 164 VLDEP------------------------------------------TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201 (283)
T ss_pred EEeCC------------------------------------------ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 77765 356777888999999999988889999999943
No 113
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.9e-20 Score=178.83 Aligned_cols=174 Identities=12% Similarity=0.082 Sum_probs=110.0
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCC----CccccceEEEEEecCccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDE----YREDHTRLGVWILDGEPA 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~----~~~~~~~l~i~~l~g~~~ 79 (415)
.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++... ......+..+.++.+.+.
T Consensus 25 ~il~~is~~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 25 KALNNTSLTFKKN---KVTCVIGTTGSGKSTMIQLTNGLIISETGQTI-VGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred ceeeeeEEEEeCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 5999999999999 99999999999999999999999999999976 555554210 001111222333333221
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcC-Cc-------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMT-TP-------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~-~p-------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
+. + ....+.+...+...... .. ..+++.++......++.+..| |+||+||++||||+..++..+
T Consensus 101 ~~-~-----~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~L--S~Gq~qrv~laral~~~p~lL 172 (289)
T PRK13645 101 YQ-L-----FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFEL--SGGQKRRVALAGIIAMDGNTL 172 (289)
T ss_pred hh-h-----hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhC--CHHHHHHHHHHHHHHhCCCEE
Confidence 10 0 00000000000000000 00 012222222112234445555 999999999999999877777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|++++.++|.+++++||.
T Consensus 173 lLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 173 VLDEP------------------------------------------TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred EEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 77775 346777888899999999987789999999954
No 114
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.83 E-value=6.8e-20 Score=187.15 Aligned_cols=167 Identities=20% Similarity=0.233 Sum_probs=119.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
.++|++|||++.+| ++++|+|+||||||||+|+|+|.++|++|+++ +++..+......+....||..+.+....
T Consensus 21 V~AL~~v~l~v~~G---EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~-~~G~~~~~~sp~~A~~~GI~~V~QEl~L-- 94 (500)
T COG1129 21 VKALDGVSLTVRPG---EVHALLGENGAGKSTLMKILSGVYPPDSGEIL-IDGKPVAFSSPRDALAAGIATVHQELSL-- 94 (500)
T ss_pred ceeeccceeEEeCc---eEEEEecCCCCCHHHHHHHHhCcccCCCceEE-ECCEEccCCCHHHHHhCCcEEEeechhc--
Confidence 46899999999999 99999999999999999999999999999977 7777666555556667788777665421
Q ss_pred hhhhccCCCCCCchhhHHHHhcCC-c---hhHHHHHHhHHHH-------------HHHHHhhhcCChhhHHHHHHHHHhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTT-P---WNIIDELHNWASV-------------LQDHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~-p---~~~l~~l~~w~~~-------------l~~~~~~L~lSgGekQRl~LArAl~ 145 (415)
+++.+|..++-+.+ | +.+++.- .+... .+..+..| |.+|||.|+||||+.
T Consensus 95 ----------~p~LsVaeNifLgre~~~~~g~id~~-~m~~~A~~~l~~lg~~~~~~~~v~~L--siaqrQ~VeIArAl~ 161 (500)
T COG1129 95 ----------VPNLSVAENIFLGREPTRRFGLIDRK-AMRRRARELLARLGLDIDPDTLVGDL--SIAQRQMVEIARALS 161 (500)
T ss_pred ----------cCCccHHHHhhcccccccCCCccCHH-HHHHHHHHHHHHcCCCCChhhhhhhC--CHHHHHHHHHHHHHh
Confidence 23333332222221 0 1111111 11122 33444444 999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.....+++||||+ .++..+.+.+...+|++. ..|.++
T Consensus 162 ~~arllIlDEPTa------------------------------------------aLt~~E~~~Lf~~ir~Lk-~~Gv~i 198 (500)
T COG1129 162 FDARVLILDEPTA------------------------------------------ALTVKETERLFDLIRRLK-AQGVAI 198 (500)
T ss_pred cCCCEEEEcCCcc------------------------------------------cCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 7666666677644 556677888889999986 579999
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+|+||+
T Consensus 199 i~ISHr 204 (500)
T COG1129 199 IYISHR 204 (500)
T ss_pred EEEcCc
Confidence 999983
No 115
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.83 E-value=9.3e-20 Score=181.03 Aligned_cols=179 Identities=10% Similarity=0.124 Sum_probs=118.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----cceEEEEEecCccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----HTRLGVWILDGEPA 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~~~l~i~~l~g~~~ 79 (415)
.+|+||||+|.+| ++++|+|+||||||||+++|+|+.+|++|.++ |.+.++....... +.++++..++....
T Consensus 35 ~~l~~vsl~i~~G---e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~-~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 35 KAVDGVTLRLYEG---ETLGVVGESGCGKSTFARAIIGLVKATDGEVA-WLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred EEEeeEEEEEcCC---CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE-ECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 5899999999999 99999999999999999999999999999976 7776665433211 23455544332101
Q ss_pred chhhhhhccCCCCCCchhhH-H-HH--hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 80 HSNLLRFALNQETLPHTMVM-L-VV--SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~-~-~~--d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
+. +...+.+.... + .. .+.. ...+++.+......+++++.+| |+||+||++||||+..++.
T Consensus 111 l~-------p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L--SgG~~QRv~iArAL~~~P~ 181 (331)
T PRK15079 111 LN-------PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEF--SGGQCQRIGIARALILEPK 181 (331)
T ss_pred cC-------CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccC--CHHHHHHHHHHHHHhcCCC
Confidence 10 00111111100 0 00 0111 0122333333223345555556 9999999999999998777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|......|.+.|+.+..++|.+++++|
T Consensus 182 llilDEPt------------------------------------------s~LD~~~~~~i~~lL~~l~~~~~~til~iT 219 (331)
T PRK15079 182 LIICDEPV------------------------------------------SALDVSIQAQVVNLLQQLQREMGLSLIFIA 219 (331)
T ss_pred EEEEeCCC------------------------------------------ccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 77777753 466667788889999999888899999999
Q ss_pred cCCcccHHHHHH
Q psy13975 230 AKEDKNCDLLYK 241 (415)
Q Consensus 230 ~k~~~n~~~l~~ 241 (415)
++++.+..
T Consensus 220 ----Hdl~~~~~ 227 (331)
T PRK15079 220 ----HDLAVVKH 227 (331)
T ss_pred ----CCHHHHHH
Confidence 45544443
No 116
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=8.3e-20 Score=181.16 Aligned_cols=171 Identities=11% Similarity=0.018 Sum_probs=114.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCcccc-----ceEEEEEe
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDH-----TRLGVWIL 74 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~-----~~l~i~~l 74 (415)
.+|+||||+|.+| ++++|+|+||||||||+++|+|+.+ +++|.++ |.+.++........ ..+++..+
T Consensus 21 ~~l~~vsl~i~~G---e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~-~~G~~i~~~~~~~~~~~r~~~i~~v~Q 96 (326)
T PRK11022 21 RAVDRISYSVKQG---EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE-FNGQDLQRISEKERRNLVGAEVAMIFQ 96 (326)
T ss_pred EEEeeeEEEECCC---CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEE-ECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 5899999999999 9999999999999999999999987 3789876 66666654332221 13455444
Q ss_pred cCcccchhhhhhccCCC-CCCchhhHHHHh----cCC------chhHHHHHHhH--HHHHHHHHhhhcCChhhHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQE-TLPHTMVMLVVS----MTT------PWNIIDELHNW--ASVLQDHIDSLNIGAHDYQAGRCC 141 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~-~~~~~~v~~~~d----~~~------p~~~l~~l~~w--~~~l~~~~~~L~lSgGekQRl~LA 141 (415)
+....+ .+. .+.. .+...+. ... ...+++.++.. ...++++..+| |+||+||++||
T Consensus 97 ~~~~~l--------~p~~~v~~-~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~L--SgGq~QRv~iA 165 (326)
T PRK11022 97 DPMTSL--------NPCYTVGF-QIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQL--SGGMSQRVMIA 165 (326)
T ss_pred Cchhhc--------CCcCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhC--CHHHHHHHHHH
Confidence 321111 111 1111 1111111 000 11233333332 12345556666 99999999999
Q ss_pred HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh
Q psy13975 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF 221 (415)
Q Consensus 142 rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~ 221 (415)
||+..++..+++|||+ .++|......|++.|++++.++
T Consensus 166 rAL~~~P~llilDEPt------------------------------------------s~LD~~~~~~il~lL~~l~~~~ 203 (326)
T PRK11022 166 MAIACRPKLLIADEPT------------------------------------------TALDVTIQAQIIELLLELQQKE 203 (326)
T ss_pred HHHHhCCCEEEEeCCC------------------------------------------CCCCHHHHHHHHHHHHHHHHhc
Confidence 9999888777777763 4666677888999999998888
Q ss_pred CCeEEEeccC
Q psy13975 222 GAGLFYTSAK 231 (415)
Q Consensus 222 Gasli~tS~k 231 (415)
|.+++++||.
T Consensus 204 g~til~iTHd 213 (326)
T PRK11022 204 NMALVLITHD 213 (326)
T ss_pred CCEEEEEeCC
Confidence 9999999943
No 117
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.83 E-value=6.2e-20 Score=173.85 Aligned_cols=176 Identities=16% Similarity=0.160 Sum_probs=107.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAH- 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~- 80 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.++ +.+.++....... ...+++ +.+...+
T Consensus 15 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~--~~q~~~~~ 88 (237)
T cd03252 15 PVILDNISLRIKPG---EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL-VDGHDLALADPAWLRRQVGV--VLQENVLF 88 (237)
T ss_pred ccceeceEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE-ECCeehHhcCHHHHhhcEEE--EcCCchhc
Confidence 46899999999999 99999999999999999999999999999976 5555443221111 223444 3333211
Q ss_pred -hhhhhhccCCC-CCCchhhHHHHhcCCchhHHHHH--HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 81 -SNLLRFALNQE-TLPHTMVMLVVSMTTPWNIIDEL--HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 81 -~~Ll~~~l~~~-~~~~~~v~~~~d~~~p~~~l~~l--~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
..+........ ......+....+....+.+++.+ .. ...+++.+..| |+||+||++||||+..++..+++|||
T Consensus 89 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~L--SgG~~qrv~laral~~~p~llllDEP 165 (237)
T cd03252 89 NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGY-DTIVGEQGAGL--SGGQRQRIAIARALIHNPRILIFDEA 165 (237)
T ss_pred cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccc-cchhhcCCCcC--CHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 11111110000 00000000000101111111111 00 01123344555 99999999999999987777777775
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|....+.+.+.|++++ + |.+++++||.
T Consensus 166 ------------------------------------------~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~ 196 (237)
T cd03252 166 ------------------------------------------TSALDYESEHAIMRNMHDIC-A-GRTVIIIAHR 196 (237)
T ss_pred ------------------------------------------cccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCC
Confidence 34677788889999999986 3 8999999943
No 118
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.83 E-value=8.3e-20 Score=175.31 Aligned_cols=172 Identities=13% Similarity=0.073 Sum_probs=111.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceee-----cCCCCccc-----cceEEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYIN-----VSDEYRED-----HTRLGVW 72 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~-----v~~~~~~~-----~~~l~i~ 72 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. |.+.+ +....... ...+++.
T Consensus 19 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v 94 (258)
T PRK11701 19 RKGCRDVSFDLYPG---EVLGIVGESGSGKTTLLNALSARLAPDAGEVH-YRMRDGQLRDLYALSEAERRRLLRTEWGFV 94 (258)
T ss_pred ceeeeeeeEEEeCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE-ECCccccccccccCCHHHHHHHhhcceEEE
Confidence 46899999999999 99999999999999999999999999999976 55544 32211111 1234444
Q ss_pred EecCcc-cchhhhhhccCCCCCCchhhHHH---HhcC-------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHH
Q psy13975 73 ILDGEP-AHSNLLRFALNQETLPHTMVMLV---VSMT-------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141 (415)
Q Consensus 73 ~l~g~~-~~~~Ll~~~l~~~~~~~~~v~~~---~d~~-------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LA 141 (415)
...... .+..+ .... .+... .... ....+++.+......+++.+..| |+||+||++||
T Consensus 95 ~q~~~~~~~~~~--------~~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--S~Gq~qrl~la 163 (258)
T PRK11701 95 HQHPRDGLRMQV--------SAGG-NIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF--SGGMQQRLQIA 163 (258)
T ss_pred eeCcccccCccc--------cHHH-HHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccC--CHHHHHHHHHH
Confidence 333210 11100 0000 00000 0000 01122333322112334445555 99999999999
Q ss_pred HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh
Q psy13975 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF 221 (415)
Q Consensus 142 rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~ 221 (415)
||+..++..+++||| +.++|.+..+.+.+.|+.++.++
T Consensus 164 ral~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~ 201 (258)
T PRK11701 164 RNLVTHPRLVFMDEP------------------------------------------TGGLDVSVQARLLDLLRGLVREL 201 (258)
T ss_pred HHHhcCCCEEEEcCC------------------------------------------cccCCHHHHHHHHHHHHHHHHhc
Confidence 999987777777775 34677778889999999998878
Q ss_pred CCeEEEeccC
Q psy13975 222 GAGLFYTSAK 231 (415)
Q Consensus 222 Gasli~tS~k 231 (415)
|.+++++||.
T Consensus 202 ~~tii~isH~ 211 (258)
T PRK11701 202 GLAVVIVTHD 211 (258)
T ss_pred CcEEEEEeCC
Confidence 9999999944
No 119
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.83 E-value=7.1e-20 Score=175.91 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=109.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAH- 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~- 80 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... ...+++. .+...+
T Consensus 15 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~-~~g~~~~~~~~~~~~~~i~~~--~q~~~~~ 88 (258)
T PRK13548 15 RTLLDDVSLTLRPG---EVVAILGPNGAGKSTLLRALSGELSPDSGEVR-LNGRPLADWSPAELARRRAVL--PQHSSLS 88 (258)
T ss_pred eeeeeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE-ECCEEcccCCHHHhhhheEEE--ccCCcCC
Confidence 46899999999999 99999999999999999999999999999976 5554443221111 1233443 332211
Q ss_pred h--hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc------cccccc
Q psy13975 81 S--NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF------ARLRAH 152 (415)
Q Consensus 81 ~--~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~------~~~~~~ 152 (415)
. .+..+.............. .......+++.++. ....++.+..| |+||+||++||||+.. ++..++
T Consensus 89 ~~~tv~e~l~~~~~~~~~~~~~--~~~~~~~~l~~~~l-~~~~~~~~~~L--SgGe~qrv~la~al~~~~~~~~~p~lll 163 (258)
T PRK13548 89 FPFTVEEVVAMGRAPHGLSRAE--DDALVAAALAQVDL-AHLAGRDYPQL--SGGEQQRVQLARVLAQLWEPDGPPRWLL 163 (258)
T ss_pred CCCCHHHHHHhhhcccCCCcHH--HHHHHHHHHHHcCC-HhHhcCCcccC--CHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 1 1111000000000000000 00001122333333 13344555555 9999999999999994 555556
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||| +.++|.+..+.+.+.|++++.+.|.+++++||.
T Consensus 164 LDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 200 (258)
T PRK13548 164 LDEP------------------------------------------TSALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200 (258)
T ss_pred EeCC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6665 457777888899999999985679999999943
No 120
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.83 E-value=9.3e-20 Score=166.01 Aligned_cols=149 Identities=14% Similarity=0.080 Sum_probs=102.8
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|++. +.+.++.........+..+.++.+++....
T Consensus 15 ~l~~vs~~i~~G---~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-- 88 (182)
T cd03215 15 AVRDVSFEVRAG---EIVGIAGLVGNGQTELAEALFGLRPPASGEIT-LDGKPVTRRSPRDAIRAGIAYVPEDRKREG-- 88 (182)
T ss_pred eecceEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEECCccCHHHHHhCCeEEecCCcccCc--
Confidence 689999999999 99999999999999999999999999999976 555555432211111212222222110000
Q ss_pred hhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccC
Q psy13975 85 RFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYS 164 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~ 164 (415)
.+....+ .+.+..... +|+||+||++||||+..++..+++|||
T Consensus 89 -------~~~~~t~------------~e~l~~~~~----------LS~G~~qrl~la~al~~~p~llllDEP-------- 131 (182)
T cd03215 89 -------LVLDLSV------------AENIALSSL----------LSGGNQQKVVLARWLARDPRVLILDEP-------- 131 (182)
T ss_pred -------ccCCCcH------------HHHHHHHhh----------cCHHHHHHHHHHHHHccCCCEEEECCC--------
Confidence 1111111 222211100 499999999999999977777777765
Q ss_pred ccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 165 SVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 165 ~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
..++|.+..+.+.+.+++++. .|.+++++||.
T Consensus 132 ----------------------------------~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~ 163 (182)
T cd03215 132 ----------------------------------TRGVDVGAKAEIYRLIRELAD-AGKAVLLISSE 163 (182)
T ss_pred ----------------------------------CcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 346777888899999999975 48899999954
No 121
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.83 E-value=1.3e-19 Score=171.22 Aligned_cols=164 Identities=14% Similarity=0.071 Sum_probs=108.3
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhh
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLR 85 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~ 85 (415)
|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... +.++..... ..+..+
T Consensus 1 l~~is~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~----~~~~v~q~~-~l~~~~-- 69 (230)
T TIGR01184 1 LKGVNLTIQQG---EFISLIGHSGCGKSTLLNLISGLAQPTSGGVI-LEGKQITEPGP----DRMVVFQNY-SLLPWL-- 69 (230)
T ss_pred CCceeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEECCCCCh----hheEEecCc-ccCCCC--
Confidence 57999999999 99999999999999999999999999999976 55555432111 123322211 111111
Q ss_pred hccCCCCCCchhhHHHH----hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 86 FALNQETLPHTMVMLVV----SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 86 ~~l~~~~~~~~~v~~~~----d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
...+...+... .+.. ...+++.++. ...+++.+..| |+||+||+.||||+..++..+++||
T Consensus 70 ------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrv~la~al~~~p~lllLDE 140 (230)
T TIGR01184 70 ------TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGL-TEAADKRPGQL--SGGMKQRVAIARALSIRPKVLLLDE 140 (230)
T ss_pred ------CHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCC-HHHHcCChhhC--CHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 11110000000 0000 0122333333 13344555556 9999999999999998777777776
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
| +.++|.+....+.+.|++++.+.|.+++++||.
T Consensus 141 P------------------------------------------t~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 141 P------------------------------------------FGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred C------------------------------------------CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5 357777888999999999988889999999954
No 122
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.83 E-value=3.9e-20 Score=175.69 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=108.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC--CCCCcEEEEeceeecCCCCccccceEEEEEecCccc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID--SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA- 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~--~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~- 79 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+. +|++|.+. +.+.++.........+.++.++.+.+.
T Consensus 13 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (243)
T TIGR01978 13 KEILKGVNLTVKKG---EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL-FKGQDLLELEPDERARAGLFLAFQYPEE 88 (243)
T ss_pred EEEEeccceEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEE-ECCEecCCCCHHHhhccceEeeeccccc
Confidence 35899999999999 999999999999999999999994 78999976 555554332222222333444443321
Q ss_pred chhhhhhccCCCCCCchhhH-H-HHh-------cC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 80 HSNLLRFALNQETLPHTMVM-L-VVS-------MT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~-~-~~d-------~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
+..+ ...+.... . ... .. ....+++.++......++.+.. .||+||+||++||||+
T Consensus 89 ~~~~--------t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~LS~G~~qrl~la~al 159 (243)
T TIGR01978 89 IPGV--------SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNE-GFSGGEKKRNEILQMA 159 (243)
T ss_pred cCCc--------CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhccccccc-CcCHHHHHHHHHHHHH
Confidence 1111 00000000 0 000 00 0011122222210112223321 1499999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|.+..+.+.+.|++++. .|.+
T Consensus 160 ~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~t 196 (243)
T TIGR01978 160 LLEPKLAILDEI------------------------------------------DSGLDIDALKIVAEGINRLRE-PDRS 196 (243)
T ss_pred hcCCCEEEecCC------------------------------------------cccCCHHHHHHHHHHHHHHHH-CCcE
Confidence 987777777775 346777888899999999864 6889
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 197 vi~vsH~ 203 (243)
T TIGR01978 197 FLIITHY 203 (243)
T ss_pred EEEEEec
Confidence 9999944
No 123
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.83 E-value=2.5e-20 Score=169.44 Aligned_cols=146 Identities=16% Similarity=0.141 Sum_probs=106.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
..+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++........ +..+
T Consensus 12 ~~~l~~~~~~i~~G---~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~-~~g~~~~~~~~~~~-~~~i----------- 75 (180)
T cd03214 12 RTVLDDLSLSIEAG---EIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL-LDGKDLASLSPKEL-ARKI----------- 75 (180)
T ss_pred eeeEeeeEEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCcCCHHHH-HHHH-----------
Confidence 35899999999999 99999999999999999999999999999965 44444322111000 0000
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLF 162 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~ 162 (415)
..+.. +++.++.. +.+++.+..| |+||+||++||||+..++..+++|||
T Consensus 76 ----------------~~~~q------~l~~~gl~-~~~~~~~~~L--S~G~~qrl~laral~~~p~llllDEP------ 124 (180)
T cd03214 76 ----------------AYVPQ------ALELLGLA-HLADRPFNEL--SGGERQRVLLARALAQEPPILLLDEP------ 124 (180)
T ss_pred ----------------hHHHH------HHHHcCCH-hHhcCCcccC--CHHHHHHHHHHHHHhcCCCEEEEeCC------
Confidence 00000 34444442 3445556666 99999999999999987777777765
Q ss_pred cCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 163 YSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 163 ~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.+++++.++|++++++||.
T Consensus 125 ------------------------------------~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 125 ------------------------------------TSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred ------------------------------------ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356777888999999999977668999999955
No 124
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.3e-20 Score=178.89 Aligned_cols=172 Identities=13% Similarity=0.109 Sum_probs=113.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC--ccccceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY--REDHTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~--~~~~~~l~i~~l~g~~~~ 80 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+..|+.|.+. +.+.++.... .....++++........+
T Consensus 23 ~~vl~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~-i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 98 (280)
T PRK13633 23 KLALDDVNLEVKKG---EFLVILGRNGSGKSTIAKHMNALLIPSEGKVY-VDGLDTSDEENLWDIRNKAGMVFQNPDNQI 98 (280)
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEeccccccHHHHhhheEEEecChhhhh
Confidence 36999999999999 99999999999999999999999999999976 5555553211 111233444433211111
Q ss_pred hhhhhhccCCCCCCchhhHHHH--hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVV--SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~--d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
... .+.+...+... .+. ..+.+++.++. ...+++.+..| |+||+||++||||+..++..++
T Consensus 99 ~~~--------~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~L--S~G~~qrv~laral~~~p~lll 167 (280)
T PRK13633 99 VAT--------IVEEDVAFGPENLGIPPEEIRERVDESLKKVGM-YEYRRHAPHLL--SGGQKQRVAIAGILAMRPECII 167 (280)
T ss_pred ccc--------cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCC-HhHhhCCcccC--CHHHHHHHHHHHHHHcCCCEEE
Confidence 000 00000000000 000 01123333333 24445556666 9999999999999997777777
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||| +.++|......+.+.|++++.+.|.+++++||.
T Consensus 168 lDEP------------------------------------------t~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 168 FDEP------------------------------------------TAMLDPSGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred EeCC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 7765 356777888899999999988789999999954
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=7.4e-20 Score=177.33 Aligned_cols=171 Identities=19% Similarity=0.186 Sum_probs=110.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc--cccceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR--EDHTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~--~~~~~l~i~~l~g~~~~ 80 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++..... .....+++........+
T Consensus 15 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (274)
T PRK13644 15 TPALENINLVIKKG---EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL-VSGIDTGDFSKLQGIRKLVGIVFQNPETQF 90 (274)
T ss_pred CceeeeeEEEEeCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEECCccccHHHHHhheEEEEEChhhhc
Confidence 45899999999999 99999999999999999999999999999976 55555533211 11234555433321111
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcC-C-------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMT-T-------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~-~-------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
..+ .+.+...+...... . ...+++.++. ...+++.+..| |+||+||+.||||+..++..++
T Consensus 91 ~~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--S~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 91 VGR--------TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGL-EKYRHRSPKTL--SGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred ccc--------hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-HHHhcCCcccC--CHHHHHHHHHHHHHHcCCCEEE
Confidence 110 00000000000000 0 0112223332 23334445545 9999999999999998887777
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||| +.++|......+.+.|+.++. .|.+++++||.
T Consensus 160 LDEP------------------------------------------t~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~ 195 (274)
T PRK13644 160 FDEV------------------------------------------TSMLDPDSGIAVLERIKKLHE-KGKTIVYITHN 195 (274)
T ss_pred EeCC------------------------------------------cccCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 7775 346777778889999999864 59999999954
No 126
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1e-19 Score=176.04 Aligned_cols=172 Identities=14% Similarity=0.159 Sum_probs=112.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~~ 81 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++...... .+.++++........+.
T Consensus 22 ~~il~~isl~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 97 (271)
T PRK13632 22 NNALKNVSFEINEG---EYVAILGHNGSGKSTISKILTGLLKPQSGEIK-IDGITISKENLKEIRKKIGIIFQNPDNQFI 97 (271)
T ss_pred ccceeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEecCcCCHHHHhcceEEEEeCHHHhcC
Confidence 46999999999999 99999999999999999999999999999976 555555322111 12334444332111111
Q ss_pred hhhhhccCCCCCCchhhHHHHhc-CCch-------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSM-TTPW-------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~-~~p~-------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+......... .... .+++.++. ...+++.+..| |+||+||++||||+..++..+++
T Consensus 98 ~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrl~laral~~~p~lllL 166 (271)
T PRK13632 98 GA--------TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM-EDYLDKEPQNL--SGGQKQRVAIASVLALNPEIIIF 166 (271)
T ss_pred cc--------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-HHHhhCCcccC--CHHHHHHHHHHHHHHcCCCEEEE
Confidence 11 1111100000000 0011 12222222 13344445555 99999999999999987777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| ..++|.+..+.+++.|++++.+.|.+++++||.
T Consensus 167 DEP------------------------------------------~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 202 (271)
T PRK13632 167 DES------------------------------------------TSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 (271)
T ss_pred eCC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence 775 346777888899999999987667899999955
No 127
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.82 E-value=1.3e-19 Score=181.81 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=112.7
Q ss_pred eEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc-----cccceEEEEEecCcccchh
Q psy13975 8 VFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR-----EDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 8 ~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~-----~~~~~l~i~~l~g~~~~~~ 82 (415)
++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ....++++...... .|
T Consensus 15 ~isl~i~~G---ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~-~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~-l~-- 87 (354)
T TIGR02142 15 DADFTLPGQ---GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIV-LNGRTLFDSRKGIFLPPEKRRIGYVFQEAR-LF-- 87 (354)
T ss_pred EEEEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEECccCccccccchhhCCeEEEecCCc-cC--
Confidence 899999999 99999999999999999999999999999976 55555532111 11223444432211 11
Q ss_pred hhhhccCCCCCCchhhHHHHhcC----C-------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT----T-------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~----~-------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
.+.++...+.+. . ...+++.++. ...+++.+..| |+|||||++||||+..++..+
T Consensus 88 -----------~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~L--SgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 88 -----------PHLSVRGNLRYGMKRARPSERRISFERVIELLGI-GHLLGRLPGRL--SGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred -----------CCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCC-hhHhcCChhhC--CHHHHHHHHHHHHHHcCCCEE
Confidence 111111111110 0 1123333333 23445555556 999999999999999877777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| ..++|.+..+.+.+.|++++.+.|.+++++||
T Consensus 154 lLDEP------------------------------------------ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH- 190 (354)
T TIGR02142 154 LMDEP------------------------------------------LAALDDPRKYEILPYLERLHAEFGIPILYVSH- 190 (354)
T ss_pred EEcCC------------------------------------------CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEec-
Confidence 77775 34677788899999999998888999999994
Q ss_pred CcccHHHHHH
Q psy13975 232 EDKNCDLLYK 241 (415)
Q Consensus 232 ~~~n~~~l~~ 241 (415)
+.+.+..
T Consensus 191 ---~~~~~~~ 197 (354)
T TIGR02142 191 ---SLQEVLR 197 (354)
T ss_pred ---CHHHHHH
Confidence 4554444
No 128
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.4e-19 Score=163.56 Aligned_cols=142 Identities=20% Similarity=0.163 Sum_probs=103.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
.++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++.... ...+..+.++.+...
T Consensus 13 ~~~l~~~~~~i~~G---e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~--~~~~~~i~~~~q~~~--- 83 (173)
T cd03230 13 KTALDDISLTVEKG---EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK-VLGKDIKKEP--EEVKRRIGYLPEEPS--- 83 (173)
T ss_pred eeeeeeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEEcccch--HhhhccEEEEecCCc---
Confidence 35899999999999 99999999999999999999999999999966 5554443211 111223333333211
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLF 162 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~ 162 (415)
.+....+ .+.+. ||+||+||++||||+..++..+++|||
T Consensus 84 ---------~~~~~tv------------~~~~~--------------LS~G~~qrv~laral~~~p~illlDEP------ 122 (173)
T cd03230 84 ---------LYENLTV------------RENLK--------------LSGGMKQRLALAQALLHDPELLILDEP------ 122 (173)
T ss_pred ---------cccCCcH------------HHHhh--------------cCHHHHHHHHHHHHHHcCCCEEEEeCC------
Confidence 1111111 11110 499999999999999987777777775
Q ss_pred cCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 163 YSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 163 ~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|....+.+.+.|++++.+ |.+++++||.
T Consensus 123 ------------------------------------t~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~ 154 (173)
T cd03230 123 ------------------------------------TSGLDPESRREFWELLRELKKE-GKTILLSSHI 154 (173)
T ss_pred ------------------------------------ccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCC
Confidence 3467778889999999999876 8999999954
No 129
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.82 E-value=1e-19 Score=174.15 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=110.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceee-----cCCCCccc-----cceEEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYIN-----VSDEYRED-----HTRLGVW 72 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~-----v~~~~~~~-----~~~l~i~ 72 (415)
..+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.+ +....... ...+++.
T Consensus 16 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (253)
T TIGR02323 16 GKGCRDVSFDLYPG---EVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT-YIMRSGAELELYQLSEAERRRLMRTEWGFV 91 (253)
T ss_pred ceEeecceEEEeCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-EecccccccccccCCHHHHHHhhhcceEEE
Confidence 35899999999999 99999999999999999999999999999976 44433 22111111 1224444
Q ss_pred EecCcc-cchhhhhhccCCCCCCchhhHH-HHhc---------CCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHH
Q psy13975 73 ILDGEP-AHSNLLRFALNQETLPHTMVML-VVSM---------TTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141 (415)
Q Consensus 73 ~l~g~~-~~~~Ll~~~l~~~~~~~~~v~~-~~d~---------~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LA 141 (415)
..+... .+..+ .... .+.. ...+ .....+++.++.....+++.+..| |+||+||++||
T Consensus 92 ~q~~~~~~~~~~--------~~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~L--SgG~~qrv~la 160 (253)
T TIGR02323 92 HQNPRDGLRMRV--------SAGA-NIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAF--SGGMQQRLQIA 160 (253)
T ss_pred EeCcccccCccc--------cHHH-HHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhc--CHHHHHHHHHH
Confidence 333210 00000 0000 0000 0000 001123333333112344455555 99999999999
Q ss_pred HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh
Q psy13975 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF 221 (415)
Q Consensus 142 rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~ 221 (415)
||+..++..+++||| ..++|.+..+.+.+.|++++.+.
T Consensus 161 ral~~~p~vlllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~~~ 198 (253)
T TIGR02323 161 RNLVTRPRLVFMDEP------------------------------------------TGGLDVSVQARLLDLLRGLVRDL 198 (253)
T ss_pred HHHhcCCCEEEEcCC------------------------------------------CccCCHHHHHHHHHHHHHHHHhc
Confidence 999987877777775 34677788889999999998878
Q ss_pred CCeEEEeccC
Q psy13975 222 GAGLFYTSAK 231 (415)
Q Consensus 222 Gasli~tS~k 231 (415)
|.+++++||.
T Consensus 199 ~~tii~vsH~ 208 (253)
T TIGR02323 199 GLAVIIVTHD 208 (253)
T ss_pred CCEEEEEeCC
Confidence 9999999954
No 130
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.4e-19 Score=167.71 Aligned_cols=155 Identities=12% Similarity=0.050 Sum_probs=106.1
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC---CCCcEEEEeceeecCCCCccccceEEEEEecCcc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS---PEKGLALEYAYINVSDEYREDHTRLGVWILDGEP 78 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~---p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~ 78 (415)
++.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+ |++|.+. +.+.++.........++++. .+..
T Consensus 19 ~~~il~~~s~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~-i~g~~~~~~~~~~~~~i~~~--~q~~ 92 (202)
T cd03233 19 KIPILKDFSGVVKPG---EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH-YNGIPYKEFAEKYPGEIIYV--SEED 92 (202)
T ss_pred CceeeeeEEEEECCC---cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE-ECCEECccchhhhcceEEEE--eccc
Confidence 346899999999999 9999999999999999999999998 8899976 55555443211112233333 2221
Q ss_pred cchhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 79 AHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 79 ~~~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
. .+....+...+.+.. .. ..++.+..| |+||+||++||||+..++..+++|||
T Consensus 93 ~------------~~~~~tv~~~l~~~~--------~~---~~~~~~~~L--S~Ge~qrl~laral~~~p~llllDEP-- 145 (202)
T cd03233 93 V------------HFPTLTVRETLDFAL--------RC---KGNEFVRGI--SGGERKRVSIAEALVSRASVLCWDNS-- 145 (202)
T ss_pred c------------cCCCCcHHHHHhhhh--------hh---ccccchhhC--CHHHHHHHHHHHHHhhCCCEEEEcCC--
Confidence 1 122222222221110 00 034445556 99999999999999988877777775
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
..++|.+..+.+.+.+++++.+++.+++.++
T Consensus 146 ----------------------------------------t~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~ 176 (202)
T cd03233 146 ----------------------------------------TRGLDSSTALEILKCIRTMADVLKTTTFVSL 176 (202)
T ss_pred ----------------------------------------CccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 3467778888999999999877677655554
No 131
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.82 E-value=1.1e-19 Score=174.85 Aligned_cols=178 Identities=15% Similarity=0.087 Sum_probs=111.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCC---cEEEEeceeecCCCC------ccccceEEEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK---GLALEYAYINVSDEY------REDHTRLGVWI 73 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~---G~il~~~~~~v~~~~------~~~~~~l~i~~ 73 (415)
..+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+. |.+. +.+.++.... .....++++..
T Consensus 17 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~~i~~~~ 92 (262)
T PRK09984 17 HQALHAVDLNIHHG---EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIE-LLGRTVQREGRLARDIRKSRANTGYIF 92 (262)
T ss_pred eEEEecceEEEcCC---cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEE-ECCEecccccccchhHHHHHhheEEEc
Confidence 46899999999999 9999999999999999999999998764 8865 5555543211 01112344433
Q ss_pred ecCcccchh--hhhhcc-CCCCCCchhhHHHHhc------CCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 74 LDGEPAHSN--LLRFAL-NQETLPHTMVMLVVSM------TTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 74 l~g~~~~~~--Ll~~~l-~~~~~~~~~v~~~~d~------~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
.... .+.. +..+.. ......... ....++ .....+++.++.. ..+++.+..| |+||+||++||||+
T Consensus 93 q~~~-~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrv~laral 167 (262)
T PRK09984 93 QQFN-LVNRLSVLENVLIGALGSTPFW-RTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTL--SGGQQQRVAIARAL 167 (262)
T ss_pred cccc-cccCCcHHHHHHhhhcccccch-hhhcccccHHHHHHHHHHHHHcCCH-HHHhCCcccc--CHHHHHHHHHHHHH
Confidence 2211 1111 111110 000000000 000000 0011233334432 3445555555 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|.+..+.+.+.|++++.+.|.+
T Consensus 168 ~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~g~t 205 (262)
T PRK09984 168 MQQAKVILADEP------------------------------------------IASLDPESARIVMDTLRDINQNDGIT 205 (262)
T ss_pred hcCCCEEEecCc------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 987777777765 35777788999999999998888999
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 206 vii~tH~ 212 (262)
T PRK09984 206 VVVTLHQ 212 (262)
T ss_pred EEEEeCC
Confidence 9999944
No 132
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=9.9e-20 Score=174.49 Aligned_cols=177 Identities=13% Similarity=0.095 Sum_probs=109.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCccc-c
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPA-H 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~-~ 80 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ...+++. .++.. +
T Consensus 15 ~~il~~is~~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~--~q~~~~~ 88 (255)
T PRK11231 15 KRILNDLSLSLPTG---KITALIGPNGCGKSTLLKCFARLLTPQSGTVF-LGDKPISMLSSRQLARRLALL--PQHHLTP 88 (255)
T ss_pred EEEEeeeeeEEcCC---cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEE-ECCEEhHHCCHHHHhhheEEe--cccCCCC
Confidence 46899999999999 99999999999999999999999999999965 5554443221111 1223333 33221 1
Q ss_pred h--hhhhhccCC-CCCCch-hhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 81 S--NLLRFALNQ-ETLPHT-MVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 81 ~--~Ll~~~l~~-~~~~~~-~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
. ++..+.... ..+... ......+-.....+++.++. ...++..+..| |+||+||++||||+..++..+++|||
T Consensus 89 ~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~laral~~~p~llllDEP 165 (255)
T PRK11231 89 EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRI-NHLADRRLTDL--SGGQRQRAFLAMVLAQDTPVVLLDEP 165 (255)
T ss_pred CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCC-HHHHcCCcccC--CHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 111110000 000000 00000000000112222222 13344455555 99999999999999987777777765
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 166 ------------------------------------------~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~ 197 (255)
T PRK11231 166 ------------------------------------------TTYLDINHQVELMRLMRELNT-QGKTVVTVLHD 197 (255)
T ss_pred ------------------------------------------cccCCHHHHHHHHHHHHHHHH-CCCEEEEEECC
Confidence 356777888899999999865 48999999943
No 133
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=1e-19 Score=169.96 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=109.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+++|+.|.+. +.+.++... .....+++. .+.+. +.
T Consensus 24 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~i~~~--~~~~~i~~~--~q~~~~~~ 95 (214)
T PRK13543 24 EPVFGPLDFHVDAG---EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQ-IDGKTATRG--DRSRFMAYL--GHLPGLKA 95 (214)
T ss_pred ceeeecceEEECCC---CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEE-ECCEEccch--hhhhceEEe--ecCccccc
Confidence 46899999999999 99999999999999999999999999999966 555554321 111223333 22211 11
Q ss_pred hhhhhccCCCCCCchhhHH-HHhcCCc----hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 82 NLLRFALNQETLPHTMVML-VVSMTTP----WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~-~~d~~~p----~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
.+ ...+..... .+.-... ..+++.++. ....++.+..| |+||+||++|||++..++..+++|||
T Consensus 96 ~~--------t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~laral~~~p~llllDEP 164 (214)
T PRK13543 96 DL--------STLENLHFLCGLHGRRAKQMPGSALAIVGL-AGYEDTLVRQL--SAGQKKRLALARLWLSPAPLWLLDEP 164 (214)
T ss_pred CC--------cHHHHHHHHHHhcCCcHHHHHHHHHHHcCC-hhhccCChhhC--CHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 000000000 0000011 122233322 12334555555 99999999999999977777777765
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 165 ------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~ 196 (214)
T PRK13543 165 ------------------------------------------YANLDLEGITLVNRMISAHLR-GGGAALVTTHG 196 (214)
T ss_pred ------------------------------------------cccCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 356777888999999999865 58999999954
No 134
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=9.1e-20 Score=176.19 Aligned_cols=171 Identities=12% Similarity=0.120 Sum_probs=111.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~~ 82 (415)
.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ...+++........+..
T Consensus 23 ~~l~~isl~i~~G---e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 23 FTLKDVSFNIPKG---QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF-YNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred cceeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 5899999999999 99999999999999999999999999999976 5555543322111 22344443321101111
Q ss_pred hhhhccCCCCCCchhhHHHHhcCC--------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTT--------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~--------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
. .+.+........... ...+++.++. ...++..+..| |+||+||++||||+..++..+++|
T Consensus 99 ~--------~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrl~laral~~~p~lllLD 167 (269)
T PRK13648 99 S--------IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM-LERADYEPNAL--SGGQKQRVAIAGVLALNPSVIILD 167 (269)
T ss_pred c--------cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCC-chhhhCCcccC--CHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0 000000000000000 0112222222 12333444444 999999999999999777777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|....+.+.+.|++++.++|.+++++||.
T Consensus 168 EP------------------------------------------t~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~ 202 (269)
T PRK13648 168 EA------------------------------------------TSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202 (269)
T ss_pred CC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 65 357777888999999999988789999999954
No 135
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.82 E-value=2.1e-19 Score=169.60 Aligned_cols=170 Identities=14% Similarity=0.095 Sum_probs=109.9
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC----CCcEEEEeceeecCCCCccccceEEEEEecCcccc
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP----EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p----~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~ 80 (415)
+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++... ......+++........+
T Consensus 1 ~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~-~~g~~~~~~-~~~~~~i~~~~q~~~~~~ 75 (230)
T TIGR02770 1 LVQDLNLSLKRG---EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEIL-LDGRPLLPL-SIRGRHIATIMQNPRTAF 75 (230)
T ss_pred CccceeEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEE-ECCEechhh-hhhhheeEEEecCchhhc
Confidence 589999999999 99999999999999999999999998 899976 555554321 111123444432221111
Q ss_pred hhhhhhccCCCCCCchhhHHHHh-cC--------CchhHHHHHHhH--HHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVS-MT--------TPWNIIDELHNW--ASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d-~~--------~p~~~l~~l~~w--~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
... ....+. +..... .. ....+++.++.+ ...+++.+..| |+||+||++||||+..++.
T Consensus 76 ~~~-------~t~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~L--S~G~~qrv~laral~~~p~ 145 (230)
T TIGR02770 76 NPL-------FTMGNH-AIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQL--SGGMLQRVMIALALLLEPP 145 (230)
T ss_pred Ccc-------cCHHHH-HHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhc--CHHHHHHHHHHHHHhcCCC
Confidence 100 000000 000000 00 011223333321 12344455555 9999999999999997777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+....+.+.|++++.++|.+++++|
T Consensus 146 vllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 183 (230)
T TIGR02770 146 FLIADEP------------------------------------------TTDLDVVNQARVLKLLRELRQLFGTGILLIT 183 (230)
T ss_pred EEEEcCC------------------------------------------ccccCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7777765 3467777888999999999887899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 184 H~ 185 (230)
T TIGR02770 184 HD 185 (230)
T ss_pred CC
Confidence 54
No 136
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.82 E-value=9.2e-20 Score=170.87 Aligned_cols=171 Identities=14% Similarity=0.110 Sum_probs=113.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCccc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEPA- 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~- 79 (415)
..+|+++||++.+| ++++|+|+||||||||+++|+|+.+|++|.++ +.+.++....... ..+.++.++.+.+.
T Consensus 18 ~~il~~vs~~i~~G---~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (220)
T TIGR02982 18 KQVLFDINLEINPG---EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK-VLGQELYGASEKELVQLRRNIGYIFQAHNL 93 (220)
T ss_pred eeEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEEhHhcCHhHHHHHHhheEEEcCChhh
Confidence 45899999999999 99999999999999999999999999999976 5555443221111 11223333333321
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcC----------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMT----------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~----------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
+..+ .+.+... ...+.. ....+++.+.. .+.+++.+..| |+||+||++|||++..++.
T Consensus 94 ~~~~--------t~~~n~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~l--S~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 94 LGFL--------TARQNVQ-MALELQPNLSYQEARERARAMLEAVGL-GDHLDYYPHNL--SGGQKQRVAIARALVHRPK 161 (220)
T ss_pred cCCC--------CHHHHHH-HHHHhccCCCHHHHHHHHHHHHHHcCC-hhhhhcChhhC--CHHHHHHHHHHHHHhcCCC
Confidence 1100 0111000 000000 01122333333 23445555555 9999999999999998887
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| ..++|.+..+.+.+.|+.++.+.|.+++++|
T Consensus 162 illlDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 199 (220)
T TIGR02982 162 LVLADEP------------------------------------------TAALDSKSGRDVVELMQKLAREQGCTILIVT 199 (220)
T ss_pred EEEEeCC------------------------------------------CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 7777775 3567778889999999999876799999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 200 h~ 201 (220)
T TIGR02982 200 HD 201 (220)
T ss_pred CC
Confidence 65
No 137
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.4e-19 Score=181.44 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=111.5
Q ss_pred eeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-----ccccceEEEEEecCcccch
Q psy13975 7 DVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-----REDHTRLGVWILDGEPAHS 81 (415)
Q Consensus 7 ~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-----~~~~~~l~i~~l~g~~~~~ 81 (415)
.|+||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.... .....++++. .++..
T Consensus 15 ~~vsl~i~~G---e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~-~~g~~~~~~~~~~~~~~~~~~i~~v--~q~~~-- 86 (352)
T PRK11144 15 LTVNLTLPAQ---GITAIFGRSGAGKTSLINAISGLTRPQKGRIV-LNGRVLFDAEKGICLPPEKRRIGYV--FQDAR-- 86 (352)
T ss_pred EEEEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEccccccccccchhhCCEEEE--cCCcc--
Confidence 3899999999 99999999999999999999999999999976 5555543211 1112334443 33221
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC-------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT-------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~-------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
.+++.++...+.+. +...+++.++. ...+++.+..| |+|||||++||||+..++..+++|
T Consensus 87 ----------l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--SgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 87 ----------LFPHYKVRGNLRYGMAKSMVAQFDKIVALLGI-EPLLDRYPGSL--SGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred ----------cCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCC-chhhhCCcccC--CHHHHHHHHHHHHHHcCCCEEEEc
Confidence 11112221111111 11123444444 24455566666 999999999999999888777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||+ .++|....+.+.+.|++++.++|.+++++||.
T Consensus 154 EPt------------------------------------------s~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 154 EPL------------------------------------------ASLDLPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred CCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 753 46777888899999999988889999999954
No 138
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=1.2e-19 Score=168.68 Aligned_cols=167 Identities=15% Similarity=0.123 Sum_probs=109.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. |.+.++.. ...+..++++ .+.. .+.
T Consensus 15 ~~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~--~~~~~~~~~~--~~~~~~~~ 86 (207)
T PRK13539 15 RVLFSGLSFTLAAG---EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK-LDGGDIDD--PDVAEACHYL--GHRNAMKP 86 (207)
T ss_pred eEEEeceEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEeCcc--hhhHhhcEEe--cCCCcCCC
Confidence 35899999999999 99999999999999999999999999999976 55544321 1112223332 2211 110
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC--C---chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT--T---PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~--~---p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
.+ ...+... ....+. . ...+++.++.. ...+..+..| |+||+||++||||+..++..+++|||
T Consensus 87 ~~--------tv~~~l~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrl~la~al~~~p~llllDEP 154 (207)
T PRK13539 87 AL--------TVAENLE-FWAAFLGGEELDIAAALEAVGLA-PLAHLPFGYL--SAGQKRRVALARLLVSNRPIWILDEP 154 (207)
T ss_pred CC--------cHHHHHH-HHHHhcCCcHHHHHHHHHHcCCH-HHHcCChhhc--CHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 0011000 000010 0 12334444442 3344455555 99999999999999987777777765
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+.++|.+..+.+.+.|++++. .|.+++++||..
T Consensus 155 ------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~ 187 (207)
T PRK13539 155 ------------------------------------------TAALDAAAVALFAELIRAHLA-QGGIVIAATHIP 187 (207)
T ss_pred ------------------------------------------cccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 346777888899999999865 499999999654
No 139
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.82 E-value=1.3e-19 Score=173.10 Aligned_cols=171 Identities=15% Similarity=0.077 Sum_probs=109.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc-------cccceEEEEEec
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR-------EDHTRLGVWILD 75 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~-------~~~~~l~i~~l~ 75 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++..... ....+..+.++.
T Consensus 16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 91 (250)
T PRK11264 16 QTVLHGIDLEVKPG---EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR-VGDITIDTARSLSQQKGLIRQLRQHVGFVF 91 (250)
T ss_pred eeeeccceEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE-ECCEEccccccccchhhHHHHhhhhEEEEe
Confidence 46899999999999 99999999999999999999999999999965 55555432110 011122233333
Q ss_pred Cccc-chhhhhhccCCCCCCchhhHHH--Hh-cC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhh
Q psy13975 76 GEPA-HSNLLRFALNQETLPHTMVMLV--VS-MT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 76 g~~~-~~~Ll~~~l~~~~~~~~~v~~~--~d-~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~ 145 (415)
+.+. +..+ .+.+...... .. .. ..+.+++.++.. ...++....| |+||+||++||||+.
T Consensus 92 q~~~~~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~L--S~Gq~qrv~la~al~ 160 (250)
T PRK11264 92 QNFNLFPHR--------TVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRL--SGGQQQRVAIARALA 160 (250)
T ss_pred cCcccCCCC--------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhC--ChHHHHHHHHHHHHh
Confidence 3221 1111 1111100000 00 00 011223333331 2334455555 999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++||| +.++|.+..+.+.+.|++++. .|.++
T Consensus 161 ~~p~lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tv 197 (250)
T PRK11264 161 MRPEVILFDEP------------------------------------------TSALDPELVGEVLNTIRQLAQ-EKRTM 197 (250)
T ss_pred cCCCEEEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 87777777765 346777788899999999875 48999
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++||.
T Consensus 198 i~~tH~ 203 (250)
T PRK11264 198 VIVTHE 203 (250)
T ss_pred EEEeCC
Confidence 999954
No 140
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.82 E-value=9.6e-20 Score=171.42 Aligned_cols=168 Identities=15% Similarity=0.114 Sum_probs=108.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCC--c-cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEY--R-EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~--~-~~~~~l~i~~l 74 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+. +|++|.+. +.+.++.... . ....++++.
T Consensus 13 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~-- 86 (227)
T cd03260 13 KHALKDISLDIPKG---EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVL-LDGKDIYDLDVDVLELRRRVGMV-- 86 (227)
T ss_pred ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEE-ECCEEhhhcchHHHHHHhhEEEE--
Confidence 46899999999999 999999999999999999999999 89999976 5555543321 1 112234443
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHH--HhcCC-------chhHHHHHHhHHHHHHHH--HhhhcCChhhHHHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLV--VSMTT-------PWNIIDELHNWASVLQDH--IDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~--~d~~~-------p~~~l~~l~~w~~~l~~~--~~~L~lSgGekQRl~LArA 143 (415)
.+...+-.+ .+.+...+.. ..... ...+++.++.. ..+++. ...| |+||+||++||||
T Consensus 87 ~q~~~~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~L--SgG~~qrv~la~a 155 (227)
T cd03260 87 FQKPNPFPG--------SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW-DEVKDRLHALGL--SGGQQQRLCLARA 155 (227)
T ss_pred ecCchhccc--------cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCC-hHHhccCCcccC--CHHHHHHHHHHHH
Confidence 332211011 0000000000 00000 01223333331 223333 2445 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++||| +.++|.+..+.+.+.|++++.+ .
T Consensus 156 l~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~--~ 191 (227)
T cd03260 156 LANEPEVLLLDEP------------------------------------------TSALDPISTAKIEELIAELKKE--Y 191 (227)
T ss_pred HhcCCCEEEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHhhC--c
Confidence 9977777777765 3567778889999999999765 8
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 192 tii~~sH~ 199 (227)
T cd03260 192 TIVIVTHN 199 (227)
T ss_pred EEEEEecc
Confidence 89999943
No 141
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=9.7e-20 Score=180.15 Aligned_cols=171 Identities=13% Similarity=0.064 Sum_probs=110.4
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCC----------------C-cccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDE----------------Y-REDH 66 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~----------------~-~~~~ 66 (415)
++|+||||+|.+| ++++|+|+||||||||+++|+|+++|++|.+. +.+.++... . ...+
T Consensus 40 ~~L~~vsl~i~~G---e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 40 VALNNISYTFEKN---KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ-VGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred cceeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE-ECCEEcccccccccccccccccccchHHHHH
Confidence 5999999999999 99999999999999999999999999999976 555554321 0 0112
Q ss_pred ceEEEEEecCcc-cch-hhhhhccCCCCCCchhhHHHHhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHH
Q psy13975 67 TRLGVWILDGEP-AHS-NLLRFALNQETLPHTMVMLVVSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAG 138 (415)
Q Consensus 67 ~~l~i~~l~g~~-~~~-~Ll~~~l~~~~~~~~~v~~~~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl 138 (415)
.++++....... .+. .+....... ....+... ...+++.++.....+++.+..| |+||+||+
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~--------~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L--SgGqkqRv 185 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFG--------PVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL--SGGQKRRV 185 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhh--------HHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC--CHHHHHHH
Confidence 345555443211 111 111000000 00000000 0112222322112233444444 99999999
Q ss_pred HHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHH
Q psy13975 139 RCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFC 218 (415)
Q Consensus 139 ~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~ 218 (415)
+||||+..++..+++|||+ .++|......+++.|+.+.
T Consensus 186 aiAraL~~~p~iLLLDEPt------------------------------------------sgLD~~~~~~l~~~L~~l~ 223 (320)
T PRK13631 186 AIAGILAIQPEILIFDEPT------------------------------------------AGLDPKGEHEMMQLILDAK 223 (320)
T ss_pred HHHHHHHcCCCEEEEECCc------------------------------------------cCCCHHHHHHHHHHHHHHH
Confidence 9999999888877777753 4677788889999999886
Q ss_pred HHhCCeEEEeccC
Q psy13975 219 LKFGAGLFYTSAK 231 (415)
Q Consensus 219 ~~~Gasli~tS~k 231 (415)
. .|.+++++||.
T Consensus 224 ~-~g~TiiivtHd 235 (320)
T PRK13631 224 A-NNKTVFVITHT 235 (320)
T ss_pred H-CCCEEEEEecC
Confidence 5 59999999944
No 142
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=7.7e-20 Score=175.02 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=108.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc-h
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-S 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.. ...+++. .+.+.+ .
T Consensus 17 ~~vl~~vs~~i~~G---e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~-~~~----------~~~i~~v--~q~~~~~~ 80 (251)
T PRK09544 17 RRVLSDVSLELKPG---KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-RNG----------KLRIGYV--PQKLYLDT 80 (251)
T ss_pred ceEEEeEEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECC----------ccCEEEe--cccccccc
Confidence 46899999999999 99999999999999999999999999999965 221 1223333 332211 1
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
.+ . ..+...+.+. ....+++.++. .+.+++.+..| |+||+||++||||+..++..+++||
T Consensus 81 ~l----------~-~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--SgGq~qrv~laral~~~p~lllLDE 146 (251)
T PRK09544 81 TL----------P-LTVNRFLRLRPGTKKEDILPALKRVQA-GHLIDAPMQKL--SGGETQRVLLARALLNRPQLLVLDE 146 (251)
T ss_pred cc----------C-hhHHHHHhccccccHHHHHHHHHHcCC-hHHHhCChhhC--CHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11 0 0010000000 01123344433 23445566666 9999999999999998777777777
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
| +.++|.+..+.+++.|++++.++|.+++++||.
T Consensus 147 P------------------------------------------t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 147 P------------------------------------------TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred C------------------------------------------CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5 346777788899999999987779999999954
No 143
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.82 E-value=2.8e-19 Score=166.79 Aligned_cols=167 Identities=14% Similarity=0.110 Sum_probs=110.6
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cchhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHSNL 83 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~~L 83 (415)
++.++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.++ +.+.++.... .....++ ++.+.+ .+..+
T Consensus 13 ~~~~~s~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~-~~~~~i~--~v~q~~~~~~~~ 85 (213)
T TIGR01277 13 LPMEFDLNVADG---EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK-VNDQSHTGLA-PYQRPVS--MLFQENNLFAHL 85 (213)
T ss_pred cceeeEEEEeCC---cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEEcccCC-hhccceE--EEeccCccCCCC
Confidence 578999999999 99999999999999999999999999999976 5555543211 1122333 333332 11111
Q ss_pred hhhccCCCCCCchhhHHHH-hcC-------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 84 LRFALNQETLPHTMVMLVV-SMT-------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~-d~~-------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
.+.+....... ... ....+++.++. .+.+++.+..| |+||+||++||||+..++..+++||
T Consensus 86 --------t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 86 --------TVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGI-ADYLDRLPEQL--SGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred --------cHHHHHHhHhhccCCccHHHHHHHHHHHHHcCc-HHHhhCCcccC--CHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 00000000000 000 01122333333 23445555555 9999999999999997777666676
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
| +.++|.+..+.+.+.|+++..+.|.+++++||.
T Consensus 155 P------------------------------------------t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 155 P------------------------------------------FSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred C------------------------------------------CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5 456777888899999999987779999999955
No 144
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.82 E-value=1.7e-19 Score=171.07 Aligned_cols=175 Identities=11% Similarity=0.027 Sum_probs=113.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++.... ..+..++++.+.+ .|.
T Consensus 13 ~~il~~is~~i~~G---e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~-i~g~~~~~~~---~~~~~i~~~~q~~~~~~ 85 (237)
T TIGR00968 13 FQALDDVNLEVPTG---SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR-LNGQDATRVH---ARDRKIGFVFQHYALFK 85 (237)
T ss_pred eeeeeeEEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEEcCcCC---hhhcCEEEEecChhhcc
Confidence 46899999999999 99999999999999999999999999999975 5555543221 1122344444332 111
Q ss_pred --hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 --NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 --~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.+..+............ .......+.+++.+..+ ..+++.+..| |+||+||++|||++..++..+++|||
T Consensus 86 ~~t~~enl~~~~~~~~~~~--~~~~~~~~~~l~~~~l~-~~~~~~~~~l--S~G~~qrl~laral~~~p~llllDEP--- 157 (237)
T TIGR00968 86 HLTVRDNIAFGLEIRKHPK--AKIKARVEELLELVQLE-GLGDRYPNQL--SGGQRQRVALARALAVEPQVLLLDEP--- 157 (237)
T ss_pred CCcHHHHHHhHHHhcCCCH--HHHHHHHHHHHHHcCCH-hHhhCChhhC--CHHHHHHHHHHHHHhcCCCEEEEcCC---
Confidence 11110000000000000 00000012234444332 3344455555 99999999999999977777777765
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++.++|.+++++||.
T Consensus 158 ---------------------------------------~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~ 190 (237)
T TIGR00968 158 ---------------------------------------FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190 (237)
T ss_pred ---------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 457777889999999999987779999999964
No 145
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.82 E-value=7.3e-20 Score=171.83 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=112.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.. .....+++ +.+.. .+.
T Consensus 13 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~~~~~~~---~~~~~~~~--~~q~~~~~~ 83 (223)
T TIGR03740 13 QTAVNNISLTVPKN---SVYGLLGPNGAGKSTLLKMITGILRPTSGEII-FDGHPWTR---KDLHKIGS--LIESPPLYE 83 (223)
T ss_pred EEEEeeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEeccc---cccccEEE--EcCCCCccc
Confidence 46899999999999 99999999999999999999999999999965 55444321 11123333 33322 111
Q ss_pred hhhhhccCCCCCCchhhHHH--HhcC--CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 82 NLLRFALNQETLPHTMVMLV--VSMT--TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~--~d~~--~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
.+ ...+...... .... ....+++.++.. ..++..+..| |+||+||++||||+..++..+++|||
T Consensus 84 ~~--------t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~~rv~laral~~~p~llllDEP- 151 (223)
T TIGR03740 84 NL--------TARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQF--SLGMKQRLGIAIALLNHPKLLILDEP- 151 (223)
T ss_pred cC--------CHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-HHHhhhHhhC--CHHHHHHHHHHHHHhcCCCEEEECCC-
Confidence 11 1111110000 0100 112344444442 4456666666 99999999999999987777777765
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
..++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 152 -----------------------------------------~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~ 183 (223)
T TIGR03740 152 -----------------------------------------TNGLDPIGIQELRELIRSFPE-QGITVILSSHI 183 (223)
T ss_pred -----------------------------------------ccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 356777889999999999975 58899999954
No 146
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.1e-19 Score=176.33 Aligned_cols=171 Identities=11% Similarity=0.046 Sum_probs=112.5
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~~~ 82 (415)
.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.++ +.+.++...... ....+++...+....+..
T Consensus 21 ~~l~~v~l~i~~G---e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 21 NQLNGVSFSITKG---EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK-IDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred eeeeeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE-ECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 4899999999999 99999999999999999999999999999976 666555432211 123344443321111111
Q ss_pred hhhhccCCCCCCchhhHHHH--hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVV--SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~--d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
. .+.+....... .... ...+++.++. ...+++.+..| |+||+||+.|||||..++..+++|
T Consensus 97 ~--------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~lAraL~~~p~llllD 165 (277)
T PRK13642 97 A--------TVEDDVAFGMENQGIPREEMIKRVDEALLAVNM-LDFKTREPARL--SGGQKQRVAVAGIIALRPEIIILD 165 (277)
T ss_pred C--------CHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-HhHhhCCcccC--CHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0 11110000000 0000 0112222222 13334444455 999999999999999877777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|.+..+.+.+.+++++.++|.+++++||.
T Consensus 166 EP------------------------------------------t~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~ 200 (277)
T PRK13642 166 ES------------------------------------------TSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200 (277)
T ss_pred CC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 65 357777888999999999988889999999944
No 147
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.82 E-value=1.2e-19 Score=162.58 Aligned_cols=127 Identities=20% Similarity=0.206 Sum_probs=97.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~~ 80 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... ..++++. .
T Consensus 13 ~~vl~~i~~~i~~G---e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~-~~g~~~~~~~~~~~~~~~i~~~--~----- 81 (163)
T cd03216 13 VKALDGVSLSVRRG---EVHALLGENGAGKSTLMKILSGLYKPDSGEIL-VDGKEVSFASPRDARRAGIAMV--Y----- 81 (163)
T ss_pred eEEEeeeEEEEeCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEECCcCCHHHHHhcCeEEE--E-----
Confidence 46899999999999 99999999999999999999999999999965 4444432211100 1111111 0
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFY 160 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~ 160 (415)
+ ||+||+||+++|||+..++..+++|||
T Consensus 82 ---------q---------------------------------------LS~G~~qrl~laral~~~p~illlDEP---- 109 (163)
T cd03216 82 ---------Q---------------------------------------LSVGERQMVEIARALARNARLLILDEP---- 109 (163)
T ss_pred ---------e---------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC----
Confidence 0 499999999999999977777777765
Q ss_pred cccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 161 LFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 161 ~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 110 --------------------------------------~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~ 141 (163)
T cd03216 110 --------------------------------------TAALTPAEVERLFKVIRRLRA-QGVAVIFISHR 141 (163)
T ss_pred --------------------------------------CcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 356777888999999999974 48899999954
No 148
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.2e-19 Score=175.43 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=109.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc---cccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR---EDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~---~~~~~l~i~~l~g~~~ 79 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ..+.++++.. +++.
T Consensus 14 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~--q~~~ 87 (271)
T PRK13638 14 EPVLKGLNLDFSLS---PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL-WQGKPLDYSKRGLLALRQQVATVF--QDPE 87 (271)
T ss_pred cccccceEEEEcCC---CEEEEECCCCCCHHHHHHHHcCCCCCCccEEE-ECCEEcccccCCHHHHHhheEEEe--eChh
Confidence 46899999999999 99999999999999999999999999999976 55555431111 1122344443 3221
Q ss_pred chhhhhhccCCCCCCchhhHHHHh-cC-Cch-------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVS-MT-TPW-------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d-~~-~p~-------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
.. + ....+.+. +..... .. .+. .+++.++. ....++.+..| |+||+||++||||+..++..
T Consensus 88 ~~-~-----~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 88 QQ-I-----FYTDIDSD-IAFSLRNLGVPEAEITRRVDEALTLVDA-QHFRHQPIQCL--SHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred hc-c-----ccccHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHcCC-HhHhcCCchhC--CHHHHHHHHHHHHHHcCCCE
Confidence 00 0 00000000 000000 00 011 12222222 12233344445 99999999999999987777
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++||| +.++|.+..+.+.+.|++++. .|.+++++||
T Consensus 158 llLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH 194 (271)
T PRK13638 158 LLLDEP------------------------------------------TAGLDPAGRTQMIAIIRRIVA-QGNHVIISSH 194 (271)
T ss_pred EEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC
Confidence 777775 346777888899999999875 4899999994
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 195 ~ 195 (271)
T PRK13638 195 D 195 (271)
T ss_pred C
Confidence 3
No 149
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.82 E-value=1.6e-19 Score=173.07 Aligned_cols=177 Identities=13% Similarity=0.049 Sum_probs=110.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCccc-c
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPA-H 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~-~ 80 (415)
..+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|++. +.+.++....... ...+++ +.+... +
T Consensus 14 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~--~~q~~~~~ 87 (256)
T TIGR03873 14 RLIVDGVDVTAPPG---SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD-LAGVDLHGLSRRARARRVAL--VEQDSDTA 87 (256)
T ss_pred EEEEeeeeEEEcCC---cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE-ECCEEcccCCHHHHhhheEE--ecccCccC
Confidence 36899999999999 99999999999999999999999999999976 5555544322211 122333 333221 1
Q ss_pred h--hhhhhccCC-CCCCchhhHH-HHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 81 S--NLLRFALNQ-ETLPHTMVML-VVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 81 ~--~Ll~~~l~~-~~~~~~~v~~-~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
. ++..+.... .......... ..+......+++.+.. .+.+++.+..| |+||+||++||||+..++..+++|||
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrl~la~al~~~p~llllDEP 164 (256)
T TIGR03873 88 VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL-SHLADRDMSTL--SGGERQRVHVARALAQEPKLLLLDEP 164 (256)
T ss_pred CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCc-HhhhcCCcccC--CHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 0 111110000 0000000000 0000001122333333 13344445555 99999999999999977777777765
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 165 ------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~ 196 (256)
T TIGR03873 165 ------------------------------------------TNHLDVRAQLETLALVRELAA-TGVTVVAALHD 196 (256)
T ss_pred ------------------------------------------cccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 356777888899999999874 58999999954
No 150
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=175.74 Aligned_cols=174 Identities=11% Similarity=-0.012 Sum_probs=109.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc--
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-- 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-- 80 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.. ...+..+.++.+++.+
T Consensus 20 ~~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~----~~~~~~i~~v~q~~~~~~ 91 (272)
T PRK15056 20 HTALRDASFTVPGG---SIAALVGVNGSGKSTLFKALMGFVRLASGKIS-ILGQPTRQ----ALQKNLVAYVPQSEEVDW 91 (272)
T ss_pred cEEEEeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEhHH----hhccceEEEecccccccc
Confidence 46899999999999 99999999999999999999999999999965 55544421 1111123333333211
Q ss_pred --hhh-hhhccCCCCCCchhhHH---HHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 81 --SNL-LRFALNQETLPHTMVML---VVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 81 --~~L-l~~~l~~~~~~~~~v~~---~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
... ....... .+....+.. ..+......+++.++. ...+++.+..| |+||+||++||||+..++..+++|
T Consensus 92 ~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--SgG~~qrv~laraL~~~p~llllD 167 (272)
T PRK15056 92 SFPVLVEDVVMMG-RYGHMGWLRRAKKRDRQIVTAALARVDM-VEFRHRQIGEL--SGGQKKRVFLARAIAQQGQVILLD 167 (272)
T ss_pred CCCcchhhheecc-cccccccccCCCHHHHHHHHHHHHHcCC-hhHhcCCcccC--CHHHHHHHHHHHHHhcCCCEEEEe
Confidence 000 0000000 000000000 0000000122333333 23334455555 999999999999999777777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 168 EP------------------------------------------t~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~ 201 (272)
T PRK15056 168 EP------------------------------------------FTGVDVKTEARIISLLRELRD-EGKTMLVSTHN 201 (272)
T ss_pred CC------------------------------------------CccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 65 356777888899999999975 48999999954
No 151
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.5e-19 Score=171.74 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=110.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCC---Cc-c-ccceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDE---YR-E-DHTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~---~~-~-~~~~l~i~~l~g~ 77 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++... .. . ...+.++.++.+.
T Consensus 15 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 15 HQALFDITLDCPQG---ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN-IAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred eeeEeeeeeEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEecccccccchhhHHHHHhheEEEecC
Confidence 46899999999999 99999999999999999999999999999966 655543210 00 0 1111223333332
Q ss_pred cc-chhhhhhccCCCCCCchhhHHHHh---cCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 78 PA-HSNLLRFALNQETLPHTMVMLVVS---MTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 78 ~~-~~~Ll~~~l~~~~~~~~~v~~~~d---~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
+. +..+ .+.+........ ... ...+++.++.. ..+++.+..| |+||+||++||||+..+
T Consensus 91 ~~~~~~~--------tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~L--S~G~~qrv~laral~~~ 159 (242)
T PRK11124 91 YNLWPHL--------TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHL--SGGQQQRVAIARALMME 159 (242)
T ss_pred ccccCCC--------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhC--CHHHHHHHHHHHHHhcC
Confidence 21 1111 111100000000 000 11223333332 3445555555 99999999999999987
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
+..+++||| +.++|.+..+.+.+.++++.. .|.++++
T Consensus 160 p~llilDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tii~ 196 (242)
T PRK11124 160 PQVLLFDEP------------------------------------------TAALDPEITAQIVSIIRELAE-TGITQVI 196 (242)
T ss_pred CCEEEEcCC------------------------------------------CCcCCHHHHHHHHHHHHHHHH-cCCEEEE
Confidence 777777765 346777888899999998854 5899999
Q ss_pred eccC
Q psy13975 228 TSAK 231 (415)
Q Consensus 228 tS~k 231 (415)
+||.
T Consensus 197 ~sh~ 200 (242)
T PRK11124 197 VTHE 200 (242)
T ss_pred EeCC
Confidence 9954
No 152
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.6e-19 Score=179.42 Aligned_cols=179 Identities=8% Similarity=0.063 Sum_probs=117.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCcccc-----ceEEEEEe
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDH-----TRLGVWIL 74 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~-----~~l~i~~l 74 (415)
.+|+||||+|.+| ++++|+|+||||||||+++|+|+.+ ++.|.++ |.+.++........ .++++.++
T Consensus 21 ~~l~~vsl~i~~G---e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~~~i~~v~Q 96 (330)
T PRK15093 21 KAVDRVSMTLTEG---EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR-FDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred EEEeeeEEEECCC---CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE-ECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 5899999999999 9999999999999999999999986 5789876 66666644322211 23555544
Q ss_pred cCcccchhhhhhccCCCCCCchhhH-H-HHh------------cCCchhHHHHHHhH--HHHHHHHHhhhcCChhhHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVM-L-VVS------------MTTPWNIIDELHNW--ASVLQDHIDSLNIGAHDYQAG 138 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~-~-~~d------------~~~p~~~l~~l~~w--~~~l~~~~~~L~lSgGekQRl 138 (415)
+....+... ..+...... + ... ......+++.++.+ ...+++.+..| |+||+||+
T Consensus 97 ~~~~~l~p~-------~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L--SgG~~QRv 167 (330)
T PRK15093 97 EPQSCLDPS-------ERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL--TEGECQKV 167 (330)
T ss_pred CcchhcCcc-------ccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC--CHHHHHHH
Confidence 322111100 000000000 0 000 00011234444332 12345556566 99999999
Q ss_pred HHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHH
Q psy13975 139 RCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFC 218 (415)
Q Consensus 139 ~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~ 218 (415)
+|||||..++..+++|||+ .++|......|.+.|+++.
T Consensus 168 ~iArAL~~~P~llilDEPt------------------------------------------s~LD~~~~~~i~~lL~~l~ 205 (330)
T PRK15093 168 MIAIALANQPRLLIADEPT------------------------------------------NAMEPTTQAQIFRLLTRLN 205 (330)
T ss_pred HHHHHHHCCCCEEEEeCCC------------------------------------------CcCCHHHHHHHHHHHHHHH
Confidence 9999999888777777763 4666677888999999998
Q ss_pred HHhCCeEEEeccCCcccHHHHHH
Q psy13975 219 LKFGAGLFYTSAKEDKNCDLLYK 241 (415)
Q Consensus 219 ~~~Gasli~tS~k~~~n~~~l~~ 241 (415)
.++|.+++++| ++++.+.+
T Consensus 206 ~~~g~tii~it----Hdl~~v~~ 224 (330)
T PRK15093 206 QNNNTTILLIS----HDLQMLSQ 224 (330)
T ss_pred HhcCCEEEEEE----CCHHHHHH
Confidence 87899999999 45544444
No 153
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.3e-19 Score=176.85 Aligned_cols=170 Identities=15% Similarity=0.071 Sum_probs=110.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-----ccccceEEEEEecCc-
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-----REDHTRLGVWILDGE- 77 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-----~~~~~~l~i~~l~g~- 77 (415)
.+|+||||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +++.++.... ...+.++++......
T Consensus 20 ~~l~~vsl~i~~G---e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 95 (288)
T PRK13643 20 RALFDIDLEVKKG---SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT-VGDIVVSSTSKQKEIKPVRKKVGVVFQFPES 95 (288)
T ss_pred cceeeeEEEEcCC---CEEEEECCCCChHHHHHHHHhcCCCCCCcEEE-ECCEECccccccccHHHHHhhEEEEecCcch
Confidence 5999999999999 99999999999999999999999999999976 6666553211 111234555444321
Q ss_pred ccchhhhhhccCCCCCCchhhHHHHhcCC-c-------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 78 PAHSNLLRFALNQETLPHTMVMLVVSMTT-P-------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~-p-------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
..+. . .+.+...+....+.. . ..+++.++......++.+..| |+|||||++|||++..++.
T Consensus 96 ~l~~-~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L--SgGqkqrvaiA~aL~~~p~ 164 (288)
T PRK13643 96 QLFE-E--------TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFEL--SGGQMRRVAIAGILAMEPE 164 (288)
T ss_pred hccc-c--------hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccC--CHHHHHHHHHHHHHHhCCC
Confidence 1111 0 000000000001000 0 112222222111234444445 9999999999999998777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|....+.+.+.|+.++. .|.+++++|
T Consensus 165 illLDEP------------------------------------------t~gLD~~~~~~l~~~l~~l~~-~g~til~vt 201 (288)
T PRK13643 165 VLVLDEP------------------------------------------TAGLDPKARIEMMQLFESIHQ-SGQTVVLVT 201 (288)
T ss_pred EEEEECC------------------------------------------ccCCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 7777775 346677788888899998875 599999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 202 Hd 203 (288)
T PRK13643 202 HL 203 (288)
T ss_pred cC
Confidence 44
No 154
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.4e-19 Score=168.44 Aligned_cols=167 Identities=16% Similarity=0.095 Sum_probs=108.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-ch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~ 81 (415)
+++|+|+||+|.+| +++|+|+||||||||+++|+|+.+|++|.+. +.+.++..........++ ++.+++. +.
T Consensus 13 ~~~l~~vs~~i~~g----~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~i~--~~~q~~~~~~ 85 (211)
T cd03264 13 KRALDGVSLTLGPG----MYGLLGPNGAGKTTLMRILATLTPPSSGTIR-IDGQDVLKQPQKLRRRIG--YLPQEFGVYP 85 (211)
T ss_pred EEEEcceeEEEcCC----cEEEECCCCCCHHHHHHHHhCCCCCCccEEE-ECCCccccchHHHHhheE--EecCCCcccc
Confidence 35899999999998 9999999999999999999999999999976 554444322111122333 3333221 11
Q ss_pred hhhhhccCCCCCCchhhHH-HH-hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVML-VV-SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~-~~-d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+...+. .+ .... ...+++.++.. ..++..+..| |+||+||++||||+..++..+++
T Consensus 86 ~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrv~la~al~~~p~llll 154 (211)
T cd03264 86 NF--------TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSL--SGGMRRRVGIAQALVGDPSILIV 154 (211)
T ss_pred cC--------CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 111110000 00 0000 11233333332 3345555656 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|.+..+.+.+.|++++. +.+++++||.
T Consensus 155 DEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~ 188 (211)
T cd03264 155 DEP------------------------------------------TAGLDPEERIRFRNLLSELGE--DRIVILSTHI 188 (211)
T ss_pred cCC------------------------------------------cccCCHHHHHHHHHHHHHHhC--CCEEEEEcCC
Confidence 765 356777888999999999974 5899999943
No 155
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.82 E-value=7.8e-20 Score=192.75 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=116.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|++|||||||++.|+|+++|++|.++ +++.++.+. ... +..+++..++......
T Consensus 348 ~~vL~~isl~i~~G---~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~ 422 (529)
T TIGR02868 348 PPVLDGVSLDLPPG---ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT-LDGVSVSSL-QDELRRRISVFAQDAHLFDT 422 (529)
T ss_pred CceeecceEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEEhhhH-HHHHHhheEEEccCcccccc
Confidence 45899999999999 99999999999999999999999999999977 777777765 333 3344554333322223
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
.+.++.. ......+..+..++.....++++..+.. -++..+.. ..||||||||++||||+.+++..+++||+++
T Consensus 423 TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~---GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TS 499 (529)
T TIGR02868 423 TVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD---GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTE 499 (529)
T ss_pred cHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc---cccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3322222 1112233333333333333333333210 11222221 2359999999999999998888888888754
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.+|.+.-+.|++.+++. ..+.+++.+||+
T Consensus 500 ------------------------------------------aLD~~te~~I~~~l~~~--~~~~TvIiItHr 528 (529)
T TIGR02868 500 ------------------------------------------HLDAGTESELLEDLLAA--LSGKTVVVITHH 528 (529)
T ss_pred ------------------------------------------cCCHHHHHHHHHHHHHh--cCCCEEEEEecC
Confidence 45555666777777754 357899999875
No 156
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.82 E-value=1.2e-19 Score=190.61 Aligned_cols=165 Identities=17% Similarity=0.099 Sum_probs=111.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcccc--ceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDH--TRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~--~~l~i~~l~g~~~~ 80 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++........ ..+++...... .+
T Consensus 24 ~~il~~vsl~i~~G---e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~-~~ 98 (510)
T PRK15439 24 VEVLKGIDFTLHAG---EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE-IGGNPCARLTPAKAHQLGIYLVPQEPL-LF 98 (510)
T ss_pred ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEECCCCCHHHHHhCCEEEEeccCc-cC
Confidence 46899999999999 99999999999999999999999999999976 55555533222221 22444332211 11
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcC---------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMT---------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~---------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
....+...+.+. +...+++.++. ....++.+..| |+|||||++|||||..++..+
T Consensus 99 -------------~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrv~la~aL~~~p~ll 162 (510)
T PRK15439 99 -------------PNLSVKENILFGLPKRQASMQKMKQLLAALGC-QLDLDSSAGSL--EVADRQIVEILRGLMRDSRIL 162 (510)
T ss_pred -------------CCCcHHHHhhcccccchHHHHHHHHHHHHcCC-CccccCChhhC--CHHHHHHHHHHHHHHcCCCEE
Confidence 111111111110 00112333332 12334555556 999999999999999877777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 163 lLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd 199 (510)
T PRK15439 163 ILDEP------------------------------------------TASLTPAETERLFSRIRELLA-QGVGIVFISHK 199 (510)
T ss_pred EEECC------------------------------------------CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 77775 346777888999999999875 58999999953
No 157
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.2e-19 Score=176.25 Aligned_cols=172 Identities=13% Similarity=0.096 Sum_probs=109.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-----ccccceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-----REDHTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-----~~~~~~l~i~~l~g~ 77 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.... ...+.++++......
T Consensus 20 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~ 95 (280)
T PRK13649 20 GRALFDVNLTIEDG---SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVR-VDDTLITSTSKNKDIKQIRKKVGLVFQFPE 95 (280)
T ss_pred cceeeeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEccccccccCHHHHHhheEEEeeChh
Confidence 36999999999999 99999999999999999999999999999976 5555543211 011223444433210
Q ss_pred ccchhhhhhccCCCCCCchhhHHHHhcC-Cch-------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 78 PAHSNLLRFALNQETLPHTMVMLVVSMT-TPW-------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~~~d~~-~p~-------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
..+ ....+.+...+...... ..+ .+++.++.....+++.+..| |+||+||++||||+..++.
T Consensus 96 ~~~--------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgG~~qrv~la~al~~~p~ 165 (280)
T PRK13649 96 SQL--------FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFEL--SGGQMRRVAIAGILAMEPK 165 (280)
T ss_pred hhh--------ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC--CHHHHHHHHHHHHHHcCCC
Confidence 011 00011111000000000 011 12222222111234445555 9999999999999998777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+..+.+.+.|++++. .|.+++++|
T Consensus 166 lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tiiivs 202 (280)
T PRK13649 166 ILVLDEP------------------------------------------TAGLDPKGRKELMTLFKKLHQ-SGMTIVLVT 202 (280)
T ss_pred EEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 7777775 346777888899999999975 589999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 203 H~ 204 (280)
T PRK13649 203 HL 204 (280)
T ss_pred cc
Confidence 54
No 158
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.3e-19 Score=169.95 Aligned_cols=169 Identities=13% Similarity=0.131 Sum_probs=114.0
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.++ +.+.++..... ...++++...... .+..+
T Consensus 13 ~~l~~is~~i~~G---e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~-i~g~~~~~~~~-~~~~i~~~~q~~~-~~~~~ 86 (235)
T cd03299 13 FKLKNVSLEVERG---DYFVILGPTGSGKSVLLETIAGFIKPDSGKIL-LNGKDITNLPP-EKRDISYVPQNYA-LFPHM 86 (235)
T ss_pred ceeeeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhCCcCCCceEEE-ECCEEcCcCCh-hHcCEEEEeecCc-cCCCc
Confidence 3799999999999 99999999999999999999999999999966 55555433211 1234444433211 11111
Q ss_pred hhhccCCCCCCchhhHHHHhc--C------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 84 LRFALNQETLPHTMVMLVVSM--T------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~d~--~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
...+...+..... . ....+++.+... ..+++.+..| |+||+||++||||+..++..+++||
T Consensus 87 --------t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 87 --------TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETL--SGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred --------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccC--CHHHHHHHHHHHHHHcCCCEEEECC
Confidence 1111100000000 0 011234444442 4455556666 9999999999999997777777776
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
| +.++|.+..+.+.+.|+.++.++|.+++.+||.
T Consensus 156 P------------------------------------------t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~ 189 (235)
T cd03299 156 P------------------------------------------FSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189 (235)
T ss_pred C------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5 356777889999999999988789999999953
No 159
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.81 E-value=2.1e-19 Score=171.74 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=109.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-c
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI--DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-A 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl--~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~ 79 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+ .+|+.|.+. +.+.++.........+.+++++.+.. .
T Consensus 20 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~q~~~~ 95 (252)
T CHL00131 20 NEILKGLNLSINKG---EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDIL-FKGESILDLEPEERAHLGIFLAFQYPIE 95 (252)
T ss_pred EEeeecceeEEcCC---cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEE-ECCEEcccCChhhhheeeEEEEeccccc
Confidence 35899999999999 99999999999999999999998 578999976 55555543322223334454444332 1
Q ss_pred chhh--hhhc---cCCCC-CCchhhHHHHhc-CCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 80 HSNL--LRFA---LNQET-LPHTMVMLVVSM-TTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 80 ~~~L--l~~~---l~~~~-~~~~~v~~~~d~-~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
+..+ ..+. ..... .....-.....+ .....+++.++.....+++.+.. .||+||+||++||||+..++..++
T Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~LSgG~~qrv~la~al~~~p~lll 174 (252)
T CHL00131 96 IPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNE-GFSGGEKKRNEILQMALLDSELAI 174 (252)
T ss_pred cccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccccc-CCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1111 0000 00000 000000000000 00001122222210122333322 149999999999999997777777
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||| +.++|.+..+.+.+.|+.++. .|.+++++||.
T Consensus 175 lDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~ 210 (252)
T CHL00131 175 LDET------------------------------------------DSGLDIDALKIIAEGINKLMT-SENSIILITHY 210 (252)
T ss_pred EcCC------------------------------------------cccCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 7765 357777888899999999874 68999999954
No 160
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.5e-19 Score=170.35 Aligned_cols=178 Identities=17% Similarity=0.183 Sum_probs=105.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc--
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-- 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-- 80 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|..|.+. +.+.++....... .+..+.++.+.+.+
T Consensus 16 ~~~l~~isl~i~~G---~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 90 (229)
T cd03254 16 KPVLKDINFSIKPG---ETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL-IDGIDIRDISRKS-LRSMIGVVLQDTFLFS 90 (229)
T ss_pred CccccceEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE-ECCEeHHHcCHHH-HhhhEEEecCCchhhh
Confidence 35899999999999 99999999999999999999999999999966 5544443221111 12223333333211
Q ss_pred hhhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 81 SNLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 81 ~~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
..+..+.. .........+...++......+++.+. .....+.+....| |+||+||++||||+..++..+++|||
T Consensus 91 ~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L--S~G~~~rv~la~al~~~p~llllDEP-- 166 (229)
T cd03254 91 GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNL--SQGERQLLAIARAMLRDPKILILDEA-- 166 (229)
T ss_pred hHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcC--CHHHHHHHHHHHHHhcCCCEEEEeCc--
Confidence 11111110 000000000000000000000111100 0001112223444 99999999999999988877777775
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
..++|....+.+.+.|+.++ .|.+++++||.
T Consensus 167 ----------------------------------------~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~ 197 (229)
T cd03254 167 ----------------------------------------TSNIDTETEKLIQEALEKLM--KGRTSIIIAHR 197 (229)
T ss_pred ----------------------------------------cccCCHHHHHHHHHHHHHhc--CCCEEEEEecC
Confidence 34677778888999999885 38999999954
No 161
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.81 E-value=5.1e-19 Score=175.75 Aligned_cols=170 Identities=11% Similarity=0.069 Sum_probs=112.6
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeecCCCCcccc-----ceEEEEEec
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE---KGLALEYAYINVSDEYREDH-----TRLGVWILD 75 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~---~G~il~~~~~~v~~~~~~~~-----~~l~i~~l~ 75 (415)
.+|+||||+|.+| ++++|+|+||||||||+++|+|+.+|. +|.++ |.+.++........ .++++..++
T Consensus 30 ~~l~~vsl~i~~G---e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~-~~G~~i~~~~~~~~~~~r~~~i~~v~Q~ 105 (330)
T PRK09473 30 TAVNDLNFSLRAG---ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT-FNGREILNLPEKELNKLRAEQISMIFQD 105 (330)
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE-ECCEECCcCCHHHHHHHhcCCEEEEEcC
Confidence 5899999999999 999999999999999999999999885 89876 77766654332221 245555443
Q ss_pred CcccchhhhhhccCCC-CCCchhhHHHHh----cCCc------hhHHHHHHhH--HHHHHHHHhhhcCChhhHHHHHHHH
Q psy13975 76 GEPAHSNLLRFALNQE-TLPHTMVMLVVS----MTTP------WNIIDELHNW--ASVLQDHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 76 g~~~~~~Ll~~~l~~~-~~~~~~v~~~~d----~~~p------~~~l~~l~~w--~~~l~~~~~~L~lSgGekQRl~LAr 142 (415)
....+ .+. .+. ..+...+. +... ..+++.++.. ...+++...+| |+||+||++|||
T Consensus 106 ~~~~l--------~p~~~v~-~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~L--SgG~~QRv~IAr 174 (330)
T PRK09473 106 PMTSL--------NPYMRVG-EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEF--SGGMRQRVMIAM 174 (330)
T ss_pred chhhc--------CCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccC--CHHHHHHHHHHH
Confidence 21111 111 111 11111111 1100 1122222210 01233445555 999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
|+..++..+++|||+ .++|......|++.|+.++.++|
T Consensus 175 AL~~~P~llilDEPt------------------------------------------s~LD~~~~~~i~~lL~~l~~~~g 212 (330)
T PRK09473 175 ALLCRPKLLIADEPT------------------------------------------TALDVTVQAQIMTLLNELKREFN 212 (330)
T ss_pred HHHcCCCEEEEeCCC------------------------------------------ccCCHHHHHHHHHHHHHHHHHcC
Confidence 999888777777753 46666778889999999998889
Q ss_pred CeEEEecc
Q psy13975 223 AGLFYTSA 230 (415)
Q Consensus 223 asli~tS~ 230 (415)
.+++++||
T Consensus 213 ~til~iTH 220 (330)
T PRK09473 213 TAIIMITH 220 (330)
T ss_pred CEEEEEEC
Confidence 99999994
No 162
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.81 E-value=2.8e-19 Score=158.57 Aligned_cols=168 Identities=14% Similarity=0.158 Sum_probs=114.1
Q ss_pred eEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhc
Q psy13975 8 VFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFA 87 (415)
Q Consensus 8 ~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~ 87 (415)
.++++|+.| ++++|+|++|||||||++.|+|++.|.+|.++ +.+.++...... ..-+++.++..
T Consensus 17 ~fdl~v~~g---e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~-i~g~d~t~~~P~-~RPVSmlFQEn----------- 80 (231)
T COG3840 17 RFDLTVPAG---EIVAILGPSGAGKSTLLNLIAGFETPASGEIL-INGVDHTASPPA-ERPVSMLFQEN----------- 80 (231)
T ss_pred EEEEeecCC---cEEEEECCCCccHHHHHHHHHhccCCCCceEE-EcCeecCcCCcc-cCChhhhhhcc-----------
Confidence 467899999 99999999999999999999999999999976 555555432211 12223322221
Q ss_pred cCCCCCCchhhHHHHhcCC-c------------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 88 LNQETLPHTMVMLVVSMTT-P------------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 88 l~~~~~~~~~v~~~~d~~~-p------------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
+.+.+.+|..++.+.. | ..+..++.. ....++...+| |||||||++|||+|.+.++.+++|
T Consensus 81 ---NLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl-~~~~~RLP~~L--SGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 81 ---NLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL-AGFLKRLPGEL--SGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred ---ccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhCh-hhHhhhCcccc--CchHHHHHHHHHHHhccCCeEEec
Confidence 1234444444444332 1 112233333 24455556666 999999999999999888888888
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcc
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDK 234 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~ 234 (415)
||.+ .+++.-+..+...+..+|.+.+.+++++| +
T Consensus 155 EPFs------------------------------------------ALdP~LR~eMl~Lv~~l~~E~~~TllmVT----H 188 (231)
T COG3840 155 EPFS------------------------------------------ALDPALRAEMLALVSQLCDERKMTLLMVT----H 188 (231)
T ss_pred Cchh------------------------------------------hcCHHHHHHHHHHHHHHHHhhCCEEEEEe----C
Confidence 8755 23344566677778899999999999999 4
Q ss_pred cHHHHHHHH
Q psy13975 235 NCDLLYKYL 243 (415)
Q Consensus 235 n~~~l~~~l 243 (415)
..+.+.+..
T Consensus 189 ~~~Da~~ia 197 (231)
T COG3840 189 HPEDAARIA 197 (231)
T ss_pred CHHHHHHhh
Confidence 555555543
No 163
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.81 E-value=3.2e-19 Score=179.76 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=115.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEecee----ecCCCCccc-----cceEEEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYI----NVSDEYRED-----HTRLGVWI 73 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~----~v~~~~~~~-----~~~l~i~~ 73 (415)
..+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|+++ +.+. ++....... ..++++.+
T Consensus 37 ~~~l~~vsf~i~~G---ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~-idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 37 VVGVANASLDIEEG---EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL-VKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred EEEEEeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE-ECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 35799999999999 99999999999999999999999999999976 4443 222211111 12355544
Q ss_pred ecCcccchhhhhhccCCCCCCchhhHHHHh---cCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 74 LDGEPAHSNLLRFALNQETLPHTMVMLVVS---MTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 74 l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d---~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
+... .+..+ ++.+.. ..... +.. ...+++.+.. ....++.+..| |+||+||++|||||
T Consensus 113 Q~~~-l~p~~--------Tv~eNi-~~~~~~~g~~~~~~~~~a~e~le~vgL-~~~~~~~~~~L--SgGq~QRV~LARAL 179 (382)
T TIGR03415 113 QKFA-LMPWL--------TVEENV-AFGLEMQGMPEAERRKRVDEQLELVGL-AQWADKKPGEL--SGGMQQRVGLARAF 179 (382)
T ss_pred CCCc-CCCCC--------cHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCC-chhhcCChhhC--CHHHHHHHHHHHHH
Confidence 3221 11100 111110 00010 011 1123333333 13345555556 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| ..++|....+.+++.|++++.+.|.+
T Consensus 180 a~~P~ILLlDEP------------------------------------------ts~LD~~~r~~l~~~L~~l~~~~~~T 217 (382)
T TIGR03415 180 AMDADILLMDEP------------------------------------------FSALDPLIRTQLQDELLELQAKLNKT 217 (382)
T ss_pred hcCCCEEEEECC------------------------------------------CccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 977777777765 34677788889999999998878999
Q ss_pred EEEeccCCcccHHHHHHH
Q psy13975 225 LFYTSAKEDKNCDLLYKY 242 (415)
Q Consensus 225 li~tS~k~~~n~~~l~~~ 242 (415)
++++| ++++.+.++
T Consensus 218 II~iT----Hdl~e~~~l 231 (382)
T TIGR03415 218 IIFVS----HDLDEALKI 231 (382)
T ss_pred EEEEe----CCHHHHHHh
Confidence 99999 455554443
No 164
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.5e-19 Score=166.96 Aligned_cols=172 Identities=13% Similarity=0.050 Sum_probs=111.2
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cchh--
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHSN-- 82 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~~-- 82 (415)
..++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ....+++. .+.+ .+..
T Consensus 15 ~~~is~~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~-~~~~i~~~--~q~~~~~~~~t 87 (232)
T PRK10771 15 PMRFDLTVERG---ERVAILGPSGAGKSTLLNLIAGFLTPASGSLT-LNGQDHTTTPP-SRRPVSML--FQENNLFSHLT 87 (232)
T ss_pred cceeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCeecCcCCh-hhccEEEE--ecccccccCCc
Confidence 34899999999 99999999999999999999999999999976 55555432211 12234443 3322 1111
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLF 162 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~ 162 (415)
+........ ..... ....+..+...+++.++.. ..+++.+..| |+||+||++||||+..++..+++|||
T Consensus 88 v~e~l~~~~-~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrv~laral~~~p~lllLDEP------ 156 (232)
T PRK10771 88 VAQNIGLGL-NPGLK-LNAAQREKLHAIARQMGIE-DLLARLPGQL--SGGQRQRVALARCLVREQPILLLDEP------ 156 (232)
T ss_pred HHHHHhccc-ccccC-CCHHHHHHHHHHHHHcCcH-HHHhCCcccC--CHHHHHHHHHHHHHhcCCCEEEEeCC------
Confidence 111110000 00000 0000000112234444442 4455666666 99999999999999977777777765
Q ss_pred cCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 163 YSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 163 ~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
..++|.+..+.+.+.|+.++.+.|.+++++||.
T Consensus 157 ------------------------------------~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 157 ------------------------------------FSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred ------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 357777888899999999988789999999944
No 165
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.81 E-value=8.3e-19 Score=168.06 Aligned_cols=170 Identities=14% Similarity=0.038 Sum_probs=112.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC----CCcEEEEeceeecCCCCccccceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP----EKGLALEYAYINVSDEYREDHTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p----~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~ 78 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++.. . ...+..+.++.+++
T Consensus 16 ~~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~-~~g~~i~~--~-~~~~~~i~~v~q~~ 88 (254)
T PRK10418 16 QPLVHGVSLTLQRG---RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVL-LDGKPVAP--C-ALRGRKIATIMQNP 88 (254)
T ss_pred cceecceEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEE-ECCeeccc--c-ccccceEEEEecCC
Confidence 46899999999999 99999999999999999999999998 899966 55555431 1 11122333333332
Q ss_pred --cchhhhhhccCCCCCCchhhHHHH-hcCC------chhHHHHHHhHH--HHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 79 --AHSNLLRFALNQETLPHTMVMLVV-SMTT------PWNIIDELHNWA--SVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 79 --~~~~Ll~~~l~~~~~~~~~v~~~~-d~~~------p~~~l~~l~~w~--~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
.+.... .+... +.... .... .+.+++.++.+. ..+++.+..| |+||+||+.||||+..+
T Consensus 89 ~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~L--S~Gq~qrv~laral~~~ 158 (254)
T PRK10418 89 RSAFNPLH-------TMHTH-ARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEM--SGGMLQRMMIALALLCE 158 (254)
T ss_pred ccccCccc-------cHHHH-HHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCccc--CHHHHHHHHHHHHHhcC
Confidence 121110 00000 00000 0010 112333333211 1344555556 99999999999999987
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
+..+++||| +.++|.+..+.+.+.|++++.+.|.++++
T Consensus 159 p~lLlLDEP------------------------------------------t~~LD~~~~~~l~~~L~~~~~~~g~til~ 196 (254)
T PRK10418 159 APFIIADEP------------------------------------------TTDLDVVAQARILDLLESIVQKRALGMLL 196 (254)
T ss_pred CCEEEEeCC------------------------------------------CcccCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 777777775 34677778889999999998878999999
Q ss_pred eccC
Q psy13975 228 TSAK 231 (415)
Q Consensus 228 tS~k 231 (415)
+||.
T Consensus 197 ~sH~ 200 (254)
T PRK10418 197 VTHD 200 (254)
T ss_pred EecC
Confidence 9953
No 166
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.5e-19 Score=170.88 Aligned_cols=177 Identities=16% Similarity=0.131 Sum_probs=105.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc--h
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH--S 81 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~--~ 81 (415)
++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... .+-.+.++.+.+.+ .
T Consensus 16 ~~l~~i~~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~ 90 (234)
T cd03251 16 PVLRDISLDIPAG---ETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL-IDGHDVRDYTLAS-LRRQIGLVSQDVFLFND 90 (234)
T ss_pred cceeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhccccCCCCEEE-ECCEEhhhCCHHH-HHhhEEEeCCCCeeccc
Confidence 6899999999999 99999999999999999999999999999976 5554443221111 12223333333211 0
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.+..+.. .........+....+......+++.+. .....++..+..| |+||+||+.||||+...+..+++|||
T Consensus 91 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L--S~G~~qrv~la~al~~~p~lllLDEP--- 165 (234)
T cd03251 91 TVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKL--SGGQRQRIAIARALLKDPPILILDEA--- 165 (234)
T ss_pred cHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcC--CHHHHHHHHHHHHHhcCCCEEEEeCc---
Confidence 1110000 000000000000000000001111110 0000112223334 99999999999999977777777765
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++ + |.+++++||.
T Consensus 166 ---------------------------------------~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~ 196 (234)
T cd03251 166 ---------------------------------------TSALDTESERLVQAALERLM-K-NRTTFVIAHR 196 (234)
T ss_pred ---------------------------------------cccCCHHHHHHHHHHHHHhc-C-CCEEEEEecC
Confidence 35677788889999999886 3 8899999944
No 167
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.5e-19 Score=169.32 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=112.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.++ +.+.++..... ....+++ +.+.+ .+.
T Consensus 13 ~~il~~i~~~i~~G---e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~-~~g~~~~~~~~-~~~~i~~--~~q~~~~~~ 85 (232)
T cd03300 13 FVALDGVSLDIKEG---EFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL-LDGKDITNLPP-HKRPVNT--VFQNYALFP 85 (232)
T ss_pred eeeeccceEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEEcCcCCh-hhcceEE--EecccccCC
Confidence 46899999999999 99999999999999999999999999999966 55555543221 1223333 33322 111
Q ss_pred hhhhhccCCCCCCchhhHHHHhc-CCc-------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSM-TTP-------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~-~~p-------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+ .+.+......... ..+ +.+++.++. .+.+++.+..| |+||+||++||||+..++..+++
T Consensus 86 ~~--------t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~l--S~G~~qrl~laral~~~p~llll 154 (232)
T cd03300 86 HL--------TVFENIAFGLRLKKLPKAEIKERVAEALDLVQL-EGYANRKPSQL--SGGQQQRVAIARALVNEPKVLLL 154 (232)
T ss_pred CC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chhhcCChhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 1111110000000 011 122333333 23344455555 99999999999999987777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|....+.+.+.|+.+..++|.+++.+|+.
T Consensus 155 DEP------------------------------------------~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 155 DEP------------------------------------------LGALDLKLRKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred cCC------------------------------------------cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 765 357777888999999999987779999999944
No 168
>KOG0084|consensus
Probab=99.81 E-value=1.1e-19 Score=162.63 Aligned_cols=160 Identities=19% Similarity=0.306 Sum_probs=129.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC---CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSP---EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p---~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|++|+|||+|+.++++..-+ -++.+++|.-..+ .......+++||+++|++.|+.+ +..+|+++
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~--e~~gk~iKlQIWDTAGQERFrti-----t~syYR~a 82 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTV--ELDGKTIKLQIWDTAGQERFRTI-----TSSYYRGA 82 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEe--eecceEEEEEeeeccccHHHhhh-----hHhhccCC
Confidence 47899999999999999999865333 2334443433322 23445679999999999999988 88899999
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|+++.++ |+.+..|...++++...
T Consensus 83 hGii~vyDiT~~~S-F~~v~~Wi~Ei~~~~~~------------------------------------------------ 113 (205)
T KOG0084|consen 83 HGIIFVYDITKQES-FNNVKRWIQEIDRYASE------------------------------------------------ 113 (205)
T ss_pred CeEEEEEEcccHHH-hhhHHHHHHHhhhhccC------------------------------------------------
Confidence 8 578999999888 89999999888888731
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe-EEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG-LFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas-li~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
++|+++||||+|+.+. +.+..++ .+.|+.++|.. +++||||++.|++..|..|.+.+...
T Consensus 114 ----~v~~lLVGNK~Dl~~~----~~v~~~~-------a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 114 ----NVPKLLVGNKCDLTEK----RVVSTEE-------AQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred ----CCCeEEEeeccccHhh----eecCHHH-------HHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHh
Confidence 6899999999999753 4555555 68999999998 99999999999999999999998864
No 169
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2e-19 Score=174.98 Aligned_cols=172 Identities=13% Similarity=0.128 Sum_probs=113.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCC---cEEEEeceeecCCCCcc-ccceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK---GLALEYAYINVSDEYRE-DHTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~---G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~ 78 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+. |.++ +.+.++...... ...++++.......
T Consensus 20 ~~~l~~v~l~i~~G---e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~-i~g~~~~~~~~~~~~~~ig~v~q~~~~ 95 (282)
T PRK13640 20 KPALNDISFSIPRG---SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKIT-VDGITLTAKTVWDIREKVGIVFQNPDN 95 (282)
T ss_pred ccceeeEEEEEcCC---CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEE-ECCEECCcCCHHHHHhheEEEEECHHH
Confidence 35899999999999 9999999999999999999999999987 7865 555555322111 12345554333211
Q ss_pred cchhhhhhccCCCCCCchhhHHHHhcC-C-------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 79 AHSNLLRFALNQETLPHTMVMLVVSMT-T-------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 79 ~~~~Ll~~~l~~~~~~~~~v~~~~d~~-~-------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
.+... .+.+...+...... . ...+++.++. ...+++.+..| |+||+||++||||+..++..
T Consensus 96 ~~~~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~L--S~G~~qrv~laral~~~P~l 164 (282)
T PRK13640 96 QFVGA--------TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGM-LDYIDSEPANL--SGGQKQRVAIAGILAVEPKI 164 (282)
T ss_pred hhccC--------CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC-hhHhcCCcccC--CHHHHHHHHHHHHHHcCCCE
Confidence 11100 01110000000000 0 1122333333 23445555555 99999999999999987777
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++||| +.++|....+.+.+.|+.++.+.|.+++++||
T Consensus 165 lllDEP------------------------------------------t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH 202 (282)
T PRK13640 165 IILDES------------------------------------------TSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202 (282)
T ss_pred EEEECC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 777765 45777788899999999998878999999995
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 203 ~ 203 (282)
T PRK13640 203 D 203 (282)
T ss_pred C
Confidence 4
No 170
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.81 E-value=1.9e-19 Score=169.23 Aligned_cols=175 Identities=17% Similarity=0.130 Sum_probs=109.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccc--
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAH-- 80 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~-- 80 (415)
.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... ...+++. .+.+.+
T Consensus 28 ~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~--~q~~~l~~ 101 (226)
T cd03248 28 LVLQDVSFTLHPG---EVTALVGPSGSGKSTVVALLENFYQPQGGQVL-LDGKPISQYEHKYLHSKVSLV--GQEPVLFA 101 (226)
T ss_pred ccccceEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE-ECCCchHHcCHHHHHhhEEEE--ecccHHHh
Confidence 6899999999999 99999999999999999999999999999965 5544432211111 2234443 333211
Q ss_pred hhhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHH--HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 81 SNLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDEL--HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 81 ~~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l--~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
..+..... .........+....+....+.+++.+ +. ...+++....| |+||+||++|||++..++..+++|||
T Consensus 102 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl-~~~~~~~~~~L--SgG~~qrv~laral~~~p~llllDEP- 177 (226)
T cd03248 102 RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGY-DTEVGEKGSQL--SGGQKQRVAIARALIRNPQVLILDEA- 177 (226)
T ss_pred hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccc-cchhhcCCCcC--CHHHHHHHHHHHHHhcCCCEEEEeCC-
Confidence 11111111 00000000000000111112233333 12 12334445555 99999999999999987777777775
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.+++++. +.+++++||.
T Consensus 178 -----------------------------------------t~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~ 208 (226)
T cd03248 178 -----------------------------------------TSALDAESEQQVQQALYDWPE--RRTVLVIAHR 208 (226)
T ss_pred -----------------------------------------cccCCHHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 357777888999999999863 6899999954
No 171
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.2e-19 Score=169.91 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=107.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... .+..+.++.+.+.+-.
T Consensus 14 ~~~l~~i~~~i~~G---e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~-~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 88 (236)
T cd03253 14 RPVLKDVSFTIPAG---KKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL-IDGQDIREVTLDS-LRRAIGVVPQDTVLFN 88 (236)
T ss_pred CceeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcccCCCCCEEE-ECCEEhhhCCHHH-HHhhEEEECCCChhhc
Confidence 45899999999999 99999999999999999999999999999976 5555543322111 1223444443322100
Q ss_pred hhhhccCCCCCCchhhHHHHhcC----Cchh---HHHHHHh--HHH--------HHHHHHhhhcCChhhHHHHHHHHHhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT----TPWN---IIDELHN--WAS--------VLQDHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~----~p~~---~l~~l~~--w~~--------~l~~~~~~L~lSgGekQRl~LArAl~ 145 (415)
.++...+.+. ..+. +++.... +.. .+.+....| |+||+||++|||||.
T Consensus 89 -------------~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~L--S~G~~~rl~la~aL~ 153 (236)
T cd03253 89 -------------DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKL--SGGEKQRVAIARAIL 153 (236)
T ss_pred -------------chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcC--CHHHHHHHHHHHHHh
Confidence 1111111110 0011 1111111 101 112223344 999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++||| ..++|.+..+.+.+.|+.++. |.++
T Consensus 154 ~~p~llllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~--~~ti 189 (236)
T cd03253 154 KNPPILLLDEA------------------------------------------TSALDTHTEREIQAALRDVSK--GRTT 189 (236)
T ss_pred cCCCEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHhcC--CCEE
Confidence 87877777775 356777888899999998864 8999
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++||.
T Consensus 190 ii~sh~ 195 (236)
T cd03253 190 IVIAHR 195 (236)
T ss_pred EEEcCC
Confidence 999954
No 172
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.8e-19 Score=191.87 Aligned_cols=178 Identities=10% Similarity=0.061 Sum_probs=118.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc----ccceEEEEEecCc-c
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE----DHTRLGVWILDGE-P 78 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~----~~~~l~i~~l~g~-~ 78 (415)
.+|++|||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. |.+.++...... .+.++++..++.. .
T Consensus 338 ~~l~~vs~~i~~G---e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~-~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 338 HAVEKVSFDLWPG---ETLSLVGESGSGKSTTGRALLRLVESQGGEII-FNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred EEEeeeEeEEcCC---CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEE-ECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 5899999999999 99999999999999999999999999999976 666555432211 1234555443321 0
Q ss_pred cchhhhhhccCCCCCCchhhH-HHH-hcCC-------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 79 AHSNLLRFALNQETLPHTMVM-LVV-SMTT-------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 79 ~~~~Ll~~~l~~~~~~~~~v~-~~~-d~~~-------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.+..+ .+.+.... ... .+.. ...+++.++.....+++.+..| |+|||||++||||+..++.
T Consensus 414 l~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~L--SgGqrQRv~iAraL~~~p~ 483 (623)
T PRK10261 414 LDPRQ--------TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEF--SGGQRQRICIARALALNPK 483 (623)
T ss_pred cCCCC--------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccC--CHHHHHHHHHHHHHhcCCC
Confidence 11111 11110000 000 1000 1123333333213345556666 9999999999999998777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|......|.+.|++++.++|.+++++|
T Consensus 484 llllDEPt------------------------------------------s~LD~~~~~~i~~ll~~l~~~~g~tvi~is 521 (623)
T PRK10261 484 VIIADEAV------------------------------------------SALDVSIRGQIINLLLDLQRDFGIAYLFIS 521 (623)
T ss_pred EEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 77777753 466777888999999999988899999999
Q ss_pred cCCcccHHHHHH
Q psy13975 230 AKEDKNCDLLYK 241 (415)
Q Consensus 230 ~k~~~n~~~l~~ 241 (415)
++++.+..
T Consensus 522 ----Hdl~~v~~ 529 (623)
T PRK10261 522 ----HDMAVVER 529 (623)
T ss_pred ----CCHHHHHH
Confidence 45544443
No 173
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.4e-19 Score=173.84 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=113.8
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc---cccceEEEEEecCcccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR---EDHTRLGVWILDGEPAH 80 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~---~~~~~l~i~~l~g~~~~ 80 (415)
.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++..... ....++++...+....+
T Consensus 16 ~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 16 EALKGINFKAEKG---EMVALLGPNGAGKSTLFLHFNGILKPTSGEVL-IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred eeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCccEEE-ECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 5899999999999 99999999999999999999999999999976 66655431111 11233444433321011
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcC--C------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMT--T------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~--~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
... .+.+...+...+.. . ...+++.++. ....++.+..| |+||+||++||||+..++..++
T Consensus 92 ~~~--------tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~L--S~Gq~qrv~laral~~~p~lll 160 (275)
T PRK13639 92 FAP--------TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGM-EGFENKPPHHL--SGGQKKRVAIAGILAMKPEIIV 160 (275)
T ss_pred ccc--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chhhcCChhhC--CHHHHHHHHHHHHHhcCCCEEE
Confidence 000 11110000000100 0 0112222222 12334445555 9999999999999997777766
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+||| +.++|.+..+.+.+.|+.++.+ |.+++++|
T Consensus 161 lDEP------------------------------------------t~gLD~~~~~~l~~~l~~l~~~-~~til~vt--- 194 (275)
T PRK13639 161 LDEP------------------------------------------TSGLDPMGASQIMKLLYDLNKE-GITIIIST--- 194 (275)
T ss_pred EeCC------------------------------------------CcCCCHHHHHHHHHHHHHHHHC-CCEEEEEe---
Confidence 6665 4577778889999999999764 99999999
Q ss_pred cccHHHHHHHH
Q psy13975 233 DKNCDLLYKYL 243 (415)
Q Consensus 233 ~~n~~~l~~~l 243 (415)
++++.+.++.
T Consensus 195 -H~~~~~~~~~ 204 (275)
T PRK13639 195 -HDVDLVPVYA 204 (275)
T ss_pred -cCHHHHHHhC
Confidence 4454444443
No 174
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.81 E-value=2.6e-19 Score=165.51 Aligned_cols=149 Identities=21% Similarity=0.225 Sum_probs=104.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI--DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl--~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~ 80 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+ .+|+.|.+. +.+.++.........+..++++.+.+..
T Consensus 13 ~~~l~~is~~i~~G---e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (200)
T cd03217 13 KEILKGVNLTIKKG---EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL-FKGEDITDLPPEERARLGIFLAFQYPPE 88 (200)
T ss_pred EEeeeccceEECCC---cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEE-ECCEECCcCCHHHHhhCcEEEeecChhh
Confidence 36899999999999 99999999999999999999999 478999966 5555554332222222234434332211
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFY 160 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~ 160 (415)
+....+. +. ++.....| |+||+||++||||+..++..+++|||
T Consensus 89 ------------~~~~~~~------------~~-------l~~~~~~L--S~G~~qrv~laral~~~p~illlDEP---- 131 (200)
T cd03217 89 ------------IPGVKNA------------DF-------LRYVNEGF--SGGEKKRNEILQLLLLEPDLAILDEP---- 131 (200)
T ss_pred ------------ccCccHH------------HH-------HhhccccC--CHHHHHHHHHHHHHhcCCCEEEEeCC----
Confidence 1111110 00 11222344 99999999999999977777777765
Q ss_pred cccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 161 LFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 161 ~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 132 --------------------------------------t~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~ 163 (200)
T cd03217 132 --------------------------------------DSGLDIDALRLVAEVINKLRE-EGKSVLIITHY 163 (200)
T ss_pred --------------------------------------CccCCHHHHHHHHHHHHHHHH-CCCEEEEEecC
Confidence 346677778888999999864 58899999954
No 175
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.81 E-value=4.5e-19 Score=165.99 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=106.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. |.+.++....... .+..+.++.+.+.+
T Consensus 17 ~~~l~~i~~~i~~G---~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~-~~~~i~~~~q~~~~-- 89 (220)
T cd03245 17 IPALDNVSLTIRAG---EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL-LDGTDIRQLDPAD-LRRNIGYVPQDVTL-- 89 (220)
T ss_pred cccccceEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEE-ECCEEhHHCCHHH-HHhhEEEeCCCCcc--
Confidence 45899999999999 99999999999999999999999999999966 5554443211111 11223333333211
Q ss_pred hhhhccCCCCCCchhhHHHHhcC----Cc---hhHHHHHHhHHHHHHHHH-----------hhhcCChhhHHHHHHHHHh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT----TP---WNIIDELHNWASVLQDHI-----------DSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~----~p---~~~l~~l~~w~~~l~~~~-----------~~L~lSgGekQRl~LArAl 144 (415)
+. ..+...+.+. .. ..+++.+.. .+.+++.+ .. ||+||+||++||||+
T Consensus 90 ----------~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~~~~--LSgG~~qrl~la~al 155 (220)
T cd03245 90 ----------FY-GTLRDNITLGAPLADDERILRAAELAGV-TDFVNKHPNGLDLQIGERGRG--LSGGQRQAVALARAL 155 (220)
T ss_pred ----------cc-chHHHHhhcCCCCCCHHHHHHHHHHcCc-HHHHHhccccccceecCCCcc--CCHHHHHHHHHHHHH
Confidence 00 0111111110 00 112222222 12233322 23 499999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|.+..+.+.+.|++++. +.+
T Consensus 156 ~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~--~~t 191 (220)
T cd03245 156 LNDPPILLLDEP------------------------------------------TSAMDMNSEERLKERLRQLLG--DKT 191 (220)
T ss_pred hcCCCEEEEeCc------------------------------------------cccCCHHHHHHHHHHHHHhcC--CCE
Confidence 977777777765 457778889999999999875 378
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 192 ii~~sH~ 198 (220)
T cd03245 192 LIIITHR 198 (220)
T ss_pred EEEEeCC
Confidence 9999954
No 176
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.81 E-value=3.2e-19 Score=172.33 Aligned_cols=174 Identities=17% Similarity=0.167 Sum_probs=111.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc----ccceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE----DHTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~----~~~~l~i~~l~g~~ 78 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++...... ....+++.......
T Consensus 25 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~-~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 100 (268)
T PRK10419 25 QTVLNNVSLSLKSG---ETVALLGRSGCGKSTLARLLVGLESPSQGNVS-WRGEPLAKLNRAQRKAFRRDIQMVFQDSIS 100 (268)
T ss_pred eeeEeceeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEeccccChhHHHHHHhcEEEEEcChhh
Confidence 56899999999999 99999999999999999999999999999966 555554332211 12234443322111
Q ss_pred cchhhhhhccCCCCCCchhhHHHH---hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 79 AHSNLLRFALNQETLPHTMVMLVV---SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 79 ~~~~Ll~~~l~~~~~~~~~v~~~~---d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.+.. .....+....... .+.. ...+++.++......++.+..| |+||+||++||||+..++.
T Consensus 101 ~~~~-------~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L--S~Ge~qrl~laral~~~p~ 171 (268)
T PRK10419 101 AVNP-------RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQL--SGGQLQRVCLARALAVEPK 171 (268)
T ss_pred ccCC-------CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccC--ChHHHHHHHHHHHHhcCCC
Confidence 1100 0011111000000 0000 0112222221001233344444 9999999999999998777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+..+.+.+.|+.++.++|.+++++|
T Consensus 172 lllLDEP------------------------------------------t~~LD~~~~~~~~~~l~~~~~~~~~tiiivs 209 (268)
T PRK10419 172 LLILDEA------------------------------------------VSNLDLVLQAGVIRLLKKLQQQFGTACLFIT 209 (268)
T ss_pred EEEEeCC------------------------------------------CcccCHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 7777775 3467777788899999999888899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 210 H~ 211 (268)
T PRK10419 210 HD 211 (268)
T ss_pred CC
Confidence 55
No 177
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.81 E-value=2e-19 Score=195.25 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=113.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.++ +++.++...+.+. +.++++..++......
T Consensus 466 ~~vL~~isl~i~~G---e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPG---EFVAIVGPSGSGKSTLLRLLLGFETPESGSVF-YDGQDLAGLDVQAVRRQLGVVLQNGRLMSG 541 (686)
T ss_pred ccceeeeEEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE-ECCEEcCcCCHHHHHhccEEEccCCccCcc
Confidence 46999999999999 99999999999999999999999999999987 7788877654433 3445555443322223
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
++.++........+..+..+++....+.+++.+.. -++..+.. ..||||||||++||||+.+++..+++||+++
T Consensus 542 TI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~---G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS- 617 (686)
T TIGR03797 542 SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPM---GMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATS- 617 (686)
T ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccc---cccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc-
Confidence 33222211111222222222222222222222110 01111111 1359999999999999998888888888754
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
++|.+..+.|++.|+++ +.+++.+||+.
T Consensus 618 -----------------------------------------~LD~~te~~i~~~L~~~----~~T~IiItHr~ 645 (686)
T TIGR03797 618 -----------------------------------------ALDNRTQAIVSESLERL----KVTRIVIAHRL 645 (686)
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHh----CCeEEEEecCh
Confidence 44445555667767664 67999999763
No 178
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.1e-19 Score=188.69 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=110.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~~ 80 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ..++++...... .+
T Consensus 18 ~~il~~vs~~i~~G---e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~i~~v~q~~~-~~ 92 (510)
T PRK09700 18 VHALKSVNLTVYPG---EIHALLGENGAGKSTLMKVLSGIHEPTKGTIT-INNINYNKLDHKLAAQLGIGIIYQELS-VI 92 (510)
T ss_pred eEEeeeeeEEEcCC---cEEEEECCCCCCHHHHHHHHcCCcCCCccEEE-ECCEECCCCCHHHHHHCCeEEEeeccc-cc
Confidence 46899999999999 99999999999999999999999999999976 5655554322211 123454433211 11
Q ss_pred hhh--hhhcc-CCCC---CCchhhHHHHh-cCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 81 SNL--LRFAL-NQET---LPHTMVMLVVS-MTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 81 ~~L--l~~~l-~~~~---~~~~~v~~~~d-~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
..+ ..+.. .... +........-+ ..+...+++.++.. ...++.+..| |+|||||++|||||..++..+++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~L--SgG~~qrv~ia~al~~~p~lllL 169 (510)
T PRK09700 93 DELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANL--SISHKQMLEIAKTLMLDAKVIIM 169 (510)
T ss_pred CCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 111 11110 0000 00000000000 00001122222221 2234455555 99999999999999988877777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
|||+ .++|.+....+.+.|++++. .|.+++++||
T Consensus 170 DEPt------------------------------------------~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH 203 (510)
T PRK09700 170 DEPT------------------------------------------SSLTNKEVDYLFLIMNQLRK-EGTAIVYISH 203 (510)
T ss_pred eCCC------------------------------------------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 7753 46777888899999999875 4889999995
No 179
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.80 E-value=3.5e-19 Score=170.88 Aligned_cols=170 Identities=14% Similarity=0.084 Sum_probs=108.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC--------------ccccce
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY--------------REDHTR 68 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~--------------~~~~~~ 68 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++.... .....+
T Consensus 18 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (257)
T PRK10619 18 HEVLKGVSLQANAG---DVISIIGSSGSGKSTFLRCINFLEKPSEGSIV-VNGQTINLVRDKDGQLKVADKNQLRLLRTR 93 (257)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEEcccccccccccccccchHHHHHhhc
Confidence 35899999999999 99999999999999999999999999999965 5555443100 011223
Q ss_pred EEEEEecCcccchhhhhhccCCCCCCchhhHHHHhcCC---------chhHHHHHHhHHHHH-HHHHhhhcCChhhHHHH
Q psy13975 69 LGVWILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTT---------PWNIIDELHNWASVL-QDHIDSLNIGAHDYQAG 138 (415)
Q Consensus 69 l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~---------p~~~l~~l~~w~~~l-~~~~~~L~lSgGekQRl 138 (415)
+++...... .+..+ ++.+........+.. ...+++.++.. ..+ ++....| |+||+||+
T Consensus 94 i~~v~q~~~-l~~~~--------sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~L--S~G~~qrv 161 (257)
T PRK10619 94 LTMVFQHFN-LWSHM--------TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGID-ERAQGKYPVHL--SGGQQQRV 161 (257)
T ss_pred eEEEecCcc-cCCCC--------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCC-hhhhhCCcccC--CHHHHHHH
Confidence 444432211 11100 111111000000000 11223333321 111 3344445 99999999
Q ss_pred HHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHH
Q psy13975 139 RCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFC 218 (415)
Q Consensus 139 ~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~ 218 (415)
+||||+..++..+++||| +.++|.+..+.+.+.|+++.
T Consensus 162 ~laral~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~l~ 199 (257)
T PRK10619 162 SIARALAMEPEVLLFDEP------------------------------------------TSALDPELVGEVLRIMQQLA 199 (257)
T ss_pred HHHHHHhcCCCEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHH
Confidence 999999987777777765 35677788889999999986
Q ss_pred HHhCCeEEEeccC
Q psy13975 219 LKFGAGLFYTSAK 231 (415)
Q Consensus 219 ~~~Gasli~tS~k 231 (415)
. .|.+++++||.
T Consensus 200 ~-~g~tiiivsH~ 211 (257)
T PRK10619 200 E-EGKTMVVVTHE 211 (257)
T ss_pred h-cCCEEEEEeCC
Confidence 5 59999999954
No 180
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.80 E-value=2.6e-19 Score=169.66 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=106.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... .+..+.++.+.+.+..
T Consensus 16 ~~~l~~i~~~i~~G---e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~ 90 (238)
T cd03249 16 VPILKGLSLTIPPG---KTVALVGSSGCGKSTVVSLLERFYDPTSGEIL-LDGVDIRDLNLRW-LRSQIGLVSQEPVLFD 90 (238)
T ss_pred ccceeceEEEecCC---CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEE-ECCEehhhcCHHH-HHhhEEEECCchhhhh
Confidence 35899999999999 99999999999999999999999999999966 5555443221111 1122333443322100
Q ss_pred hhhhccCCCCCCchhhHHHHhcC----Cch---hHHHHH--HhHHHH--------HHHHHhhhcCChhhHHHHHHHHHhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT----TPW---NIIDEL--HNWASV--------LQDHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~----~p~---~~l~~l--~~w~~~--------l~~~~~~L~lSgGekQRl~LArAl~ 145 (415)
. .+...+.+. ... ..++.. ..|... +...+..| |+||+||+.||||+.
T Consensus 91 ~-------------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L--S~G~~qrv~la~al~ 155 (238)
T cd03249 91 G-------------TIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQL--SGGQKQRIAIARALL 155 (238)
T ss_pred h-------------hHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccC--CHHHHHHHHHHHHHh
Confidence 0 111111100 000 011111 111111 11223344 999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++||| +.++|....+.+.+.|+.++ .|.++
T Consensus 156 ~~p~llllDEP------------------------------------------~~gLD~~~~~~l~~~l~~~~--~g~~v 191 (238)
T cd03249 156 RNPKILLLDEA------------------------------------------TSALDAESEKLVQEALDRAM--KGRTT 191 (238)
T ss_pred cCCCEEEEeCc------------------------------------------cccCCHHHHHHHHHHHHHhc--CCCEE
Confidence 77777777765 35677788889999999986 58999
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++||.
T Consensus 192 i~~sh~ 197 (238)
T cd03249 192 IVIAHR 197 (238)
T ss_pred EEEeCC
Confidence 999954
No 181
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.3e-19 Score=169.50 Aligned_cols=170 Identities=15% Similarity=0.106 Sum_probs=107.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCccccceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYREDHTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~ 77 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++....... .+..+.++.+.
T Consensus 16 ~~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~~g~~i~~~~~~~-~~~~i~~v~q~ 90 (250)
T PRK14247 16 VEVLDGVNLEIPDN---TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVY-LDGQDIFKMDVIE-LRRRVQMVFQI 90 (250)
T ss_pred eeeeecceeEEcCC---CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEE-ECCEECCcCCHHH-HhccEEEEecc
Confidence 46899999999999 99999999999999999999999874 689876 5555553322111 12233334333
Q ss_pred cc-chhhhhhccCCCCCCchhhH-HHH-hc-CC-------chhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 78 PA-HSNLLRFALNQETLPHTMVM-LVV-SM-TT-------PWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 78 ~~-~~~Ll~~~l~~~~~~~~~v~-~~~-d~-~~-------p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
+. +..+ .+.+...+ ... .+ .. .+.+++.++.. ...+++.+..| |+||+||++||||
T Consensus 91 ~~~~~~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--SgG~~qrv~lara 160 (250)
T PRK14247 91 PNPIPNL--------SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKL--SGGQQQRLCIARA 160 (250)
T ss_pred CccCCCC--------cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccC--CHHHHHHHHHHHH
Confidence 21 1111 01000000 000 00 00 01122222221 01233344445 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++||| +.++|.+..+.+.+.|++++ + |.
T Consensus 161 l~~~p~lllLDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~-~-~~ 196 (250)
T PRK14247 161 LAFQPEVLLADEP------------------------------------------TANLDPENTAKIESLFLELK-K-DM 196 (250)
T ss_pred HhcCCCEEEEcCC------------------------------------------CccCCHHHHHHHHHHHHHHh-c-CC
Confidence 9987777777775 34677788889999999985 3 88
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 197 tiii~sH~ 204 (250)
T PRK14247 197 TIVLVTHF 204 (250)
T ss_pred EEEEEeCC
Confidence 99999954
No 182
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.3e-20 Score=172.05 Aligned_cols=194 Identities=15% Similarity=0.118 Sum_probs=123.4
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-ccccceEEEEEecCcccc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-REDHTRLGVWILDGEPAH 80 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-~~~~~~l~i~~l~g~~~~ 80 (415)
+++||+|+|++|++| ++.+|+|+|||||||||++++|.+.|++|.+..+......... .+-+.++|++.-.-+..|
T Consensus 43 gk~iL~~isW~V~~g---e~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~ 119 (257)
T COG1119 43 GKKILGDLSWQVNPG---EHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERF 119 (257)
T ss_pred CEeeccccceeecCC---CcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhc
Confidence 468999999999999 9999999999999999999999999998887655544444333 344556666522111111
Q ss_pred hh---hhhhccCCCCCCchhhH----HHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 81 SN---LLRFALNQETLPHTMVM----LVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 81 ~~---Ll~~~l~~~~~~~~~v~----~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.. ....++.. .+....+. ...++.....+++.+.. .+..++....| |.|||||+-|||||..+|..+++
T Consensus 120 ~~~~~v~dvVlSg-~~~siG~y~~~~~~~~~~~a~~lle~~g~-~~la~r~~~~L--S~Ge~rrvLiaRALv~~P~LLiL 195 (257)
T COG1119 120 RVRETVRDVVLSG-FFASIGIYQEDLTAEDLAAAQWLLELLGA-KHLADRPFGSL--SQGEQRRVLIARALVKDPELLIL 195 (257)
T ss_pred ccccccceeeeec-ccccccccccCCCHHHHHHHHHHHHHcch-hhhccCchhhc--CHhHHHHHHHHHHHhcCCCEEEe
Confidence 00 00111100 00000000 00011111123344444 34556666666 99999999999999988888888
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKE 232 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~ 232 (415)
|||+ .++|...+..+.+.+..++...++ +++|+||..
T Consensus 196 DEP~------------------------------------------~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 196 DEPA------------------------------------------QGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred cCcc------------------------------------------ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 8863 355556677778888998888777 799999654
Q ss_pred cccHHHHHHHHHHHHh
Q psy13975 233 DKNCDLLYKYLAHRLY 248 (415)
Q Consensus 233 ~~n~~~l~~~l~h~l~ 248 (415)
+++-..+.|++.
T Consensus 234 ----eEi~~~~th~ll 245 (257)
T COG1119 234 ----EEIPPCFTHRLL 245 (257)
T ss_pred ----hhcccccceEEE
Confidence 444455555544
No 183
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.80 E-value=4.6e-19 Score=171.56 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=109.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC--------CcEEEEeceeecCCCCccc-cceEEEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE--------KGLALEYAYINVSDEYRED-HTRLGVWI 73 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~--------~G~il~~~~~~v~~~~~~~-~~~l~i~~ 73 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+ .|.+. +.+.++....... ...+++..
T Consensus 14 ~~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~v~ 89 (272)
T PRK13547 14 RAILRDLSLRIEPG---RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVT-LNGEPLAAIDAPRLARLRAVLP 89 (272)
T ss_pred EeEEecceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEE-ECCEEcccCCHHHHHhhcEEec
Confidence 46899999999999 999999999999999999999999987 88866 5555543222111 12233332
Q ss_pred ecCcccch-hhhhhccCCCC-CCc-hhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc----
Q psy13975 74 LDGEPAHS-NLLRFALNQET-LPH-TMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF---- 146 (415)
Q Consensus 74 l~g~~~~~-~Ll~~~l~~~~-~~~-~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~---- 146 (415)
......+. .+..+...... ... .......+....+.+++.++. ...+++.+..| |+||+||++||||+..
T Consensus 90 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrv~laral~~~~~~ 166 (272)
T PRK13547 90 QAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-TALVGRDVTTL--SGGELARVQFARVLAQLWPP 166 (272)
T ss_pred ccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-HhhhcCCcccC--CHHHHHHHHHHHHHhccccc
Confidence 22111111 11111110000 000 000000000001122333332 12334444555 9999999999999983
Q ss_pred -----ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh
Q psy13975 147 -----ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF 221 (415)
Q Consensus 147 -----~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~ 221 (415)
++..+++||| +.++|.+..+.+.+.|++++.++
T Consensus 167 ~~~~~~p~lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~ 204 (272)
T PRK13547 167 HDAAQPPRYLLLDEP------------------------------------------TAALDLAHQHRLLDTVRRLARDW 204 (272)
T ss_pred cccCCCCCEEEEcCc------------------------------------------cccCCHHHHHHHHHHHHHHHHhc
Confidence 5555555554 45778888999999999998777
Q ss_pred CCeEEEeccC
Q psy13975 222 GAGLFYTSAK 231 (415)
Q Consensus 222 Gasli~tS~k 231 (415)
|.+++++||.
T Consensus 205 ~~tviiisH~ 214 (272)
T PRK13547 205 NLGVLAIVHD 214 (272)
T ss_pred CCEEEEEECC
Confidence 9999999954
No 184
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.80 E-value=5.4e-19 Score=159.69 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=101.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
..+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ..++++ +.+.+.
T Consensus 15 ~~~l~~~~~~i~~G---e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~--~~q~~~-- 86 (173)
T cd03246 15 PPVLRNVSFSIEPG---ESLAIIGPSGSGKSTLARLILGLLRPTSGRVR-LDGADISQWDPNELGDHVGY--LPQDDE-- 86 (173)
T ss_pred CcceeeeEEEECCC---CEEEEECCCCCCHHHHHHHHHhccCCCCCeEE-ECCEEcccCCHHHHHhheEE--ECCCCc--
Confidence 35899999999999 99999999999999999999999999999976 5554443221111 122333 222110
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhcc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYL 161 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~ 161 (415)
.+.. ++.+.+ ||+||+||++||||+..++..+++|||
T Consensus 87 ----------~~~~-------------tv~~~l---------------LS~G~~qrv~la~al~~~p~~lllDEP----- 123 (173)
T cd03246 87 ----------LFSG-------------SIAENI---------------LSGGQRQRLGLARALYGNPRILVLDEP----- 123 (173)
T ss_pred ----------cccC-------------cHHHHC---------------cCHHHHHHHHHHHHHhcCCCEEEEECC-----
Confidence 0111 111111 499999999999999977777777765
Q ss_pred ccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 162 FYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 162 ~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|....+.+.+.|+.++. .|.+++++||.
T Consensus 124 -------------------------------------t~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~ 155 (173)
T cd03246 124 -------------------------------------NSHLDVEGERALNQAIAALKA-AGATRIVIAHR 155 (173)
T ss_pred -------------------------------------ccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 356777888899999999864 58999999954
No 185
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.80 E-value=4e-19 Score=167.25 Aligned_cols=168 Identities=12% Similarity=0.100 Sum_probs=108.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC---CCCcEEEEeceeecCCCCccccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS---PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~---p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~ 79 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+ |+.|.++ +.+.++.. . ..+..+.++.+...
T Consensus 20 ~~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~-~~g~~~~~--~--~~~~~i~~~~q~~~ 91 (226)
T cd03234 20 ARILNDVSLHVESG---QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL-FNGQPRKP--D--QFQKCVAYVRQDDI 91 (226)
T ss_pred cccccCceEEEcCC---eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEE-ECCEECCh--H--HhcccEEEeCCCCc
Confidence 57899999999999 9999999999999999999999998 8999976 55544421 1 12223444443321
Q ss_pred -chhhhhhccCCCCCCchhhHHHH-hc-CC-c--------hh-HHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc
Q psy13975 80 -HSNLLRFALNQETLPHTMVMLVV-SM-TT-P--------WN-IIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 80 -~~~Ll~~~l~~~~~~~~~v~~~~-d~-~~-p--------~~-~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~ 146 (415)
+..+ ++.+...+... .. .. . .. +++.+.. ....++.+..| |+||+||++|||++..
T Consensus 92 ~~~~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrl~laral~~ 160 (226)
T cd03234 92 LLPGL--------TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL-TRIGGNLVKGI--SGGERRRVSIAVQLLW 160 (226)
T ss_pred cCcCC--------cHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcc-hhhhcccccCc--CHHHHHHHHHHHHHHh
Confidence 1111 11110000000 00 00 0 00 1222221 12223334444 9999999999999998
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
++..+++||| ..++|....+.+.+.+++++.+ |.+++
T Consensus 161 ~p~illlDEP------------------------------------------~~gLD~~~~~~~~~~l~~~~~~-~~tii 197 (226)
T cd03234 161 DPKVLILDEP------------------------------------------TSGLDSFTALNLVSTLSQLARR-NRIVI 197 (226)
T ss_pred CCCEEEEeCC------------------------------------------CcCCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence 7777777765 3567778888999999998754 89999
Q ss_pred EeccCC
Q psy13975 227 YTSAKE 232 (415)
Q Consensus 227 ~tS~k~ 232 (415)
++||..
T Consensus 198 i~sh~~ 203 (226)
T cd03234 198 LTIHQP 203 (226)
T ss_pred EEecCC
Confidence 999664
No 186
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=4.6e-20 Score=161.55 Aligned_cols=176 Identities=18% Similarity=0.217 Sum_probs=117.4
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEE----ecC
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWI----LDG 76 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~----l~g 76 (415)
+.++|+++||.+.+| +.++|.||+|||||||+++++.+..|+.|.++ |.+.++.....+. +.++.|+. +.|
T Consensus 15 ~a~il~~isl~v~~G---e~iaitGPSG~GKStllk~va~Lisp~~G~l~-f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 15 DAKILNNISLSVRAG---EFIAITGPSGCGKSTLLKIVASLISPTSGTLL-FEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCeeecceeeeecCC---ceEEEeCCCCccHHHHHHHHHhccCCCCceEE-EcCccccccChHHHHHHHHHHHcCccccc
Confidence 567999999999999 99999999999999999999999999999976 7777776654332 23333332 223
Q ss_pred cccchhhhhhccCCCCCCchhhHHHHhcCCch---hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLVVSMTTPW---NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~p~---~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
+..+.+|+ .+..+++ +..++. .++..+.+-...+.+.+..| ||||+||++|+|.|+..|..+++
T Consensus 91 ~tVeDNli----fP~~~r~-------rr~dr~aa~~llar~~l~~~~L~k~it~l--SGGE~QriAliR~Lq~~P~ILLL 157 (223)
T COG4619 91 DTVEDNLI----FPWQIRN-------RRPDRAAALDLLARFALPDSILTKNITEL--SGGEKQRIALIRNLQFMPKILLL 157 (223)
T ss_pred cchhhccc----cchHHhc-------cCCChHHHHHHHHHcCCchhhhcchhhhc--cchHHHHHHHHHHhhcCCceEEe
Confidence 33344441 1111111 011122 22333333334566667777 99999999999999988888888
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCc
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKED 233 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~ 233 (415)
||.+++ +++.....|-..+.++......+++.++|-..
T Consensus 158 DE~TsA------------------------------------------LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d 195 (223)
T COG4619 158 DEITSA------------------------------------------LDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195 (223)
T ss_pred cCchhh------------------------------------------cChhhHHHHHHHHHHHhhhhceEEEEEecChH
Confidence 887652 23333444444455555567889999887654
Q ss_pred ccH
Q psy13975 234 KNC 236 (415)
Q Consensus 234 ~n~ 236 (415)
..+
T Consensus 196 qa~ 198 (223)
T COG4619 196 QAI 198 (223)
T ss_pred HHh
Confidence 443
No 187
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=2.1e-19 Score=157.90 Aligned_cols=176 Identities=14% Similarity=0.073 Sum_probs=114.4
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcccc-----ceEEEEEecCcc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDH-----TRLGVWILDGEP 78 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~-----~~l~i~~l~g~~ 78 (415)
.||++|+|.|.+| +.++|||++||||||||-.+.|++.|++|++. +.+.+....+.+.+ .+++++++.-..
T Consensus 24 ~IL~~V~L~v~~G---e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~-l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~L 99 (228)
T COG4181 24 SILKGVELVVKRG---ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR-LLGQPLHKLDEDARAALRARHVGFVFQSFHL 99 (228)
T ss_pred eEeecceEEecCC---ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE-EcCcchhhcCHHHHHHhhccceeEEEEeeec
Confidence 5899999999999 99999999999999999999999999999976 44555555444332 346666543211
Q ss_pred cchhh--hhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 79 AHSNL--LRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 79 ~~~~L--l~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
..+| ++++..+-.+.+...... +.....+++.+.+ -+.+..++.+| ||||+|||+|||||.-+|..+..||
T Consensus 100 -ip~ltAlENV~lPleL~ge~~~~~--~~~A~~lL~~vGL-g~Rl~HyP~qL--SGGEQQRVAiARAfa~~P~vLfADE- 172 (228)
T COG4181 100 -IPNLTALENVALPLELRGESSADS--RAGAKALLEAVGL-GKRLTHYPAQL--SGGEQQRVALARAFAGRPDVLFADE- 172 (228)
T ss_pred -cccchhhhhccchhhhcCCccccH--HHHHHHHHHHhCc-ccccccCcccc--CchHHHHHHHHHHhcCCCCEEeccC-
Confidence 1111 011000000111000000 0001133444444 35566677777 9999999999999995555444444
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|+..++.+-=+.|...|-.+..+.|.+++.++|-
T Consensus 173 -----------------------------------------PTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD 206 (228)
T COG4181 173 -----------------------------------------PTGNLDRATGDKIADLLFALNRERGTTLVLVTHD 206 (228)
T ss_pred -----------------------------------------CCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCC
Confidence 4455665666777788888888999999999864
No 188
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=5.3e-19 Score=165.44 Aligned_cols=167 Identities=13% Similarity=0.056 Sum_probs=105.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc---cccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR---EDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~---~~~~~l~i~~l~g~~~ 79 (415)
.++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ....+.++.++.+.+.
T Consensus 14 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 89 (218)
T cd03290 14 LATLSNINIRIPTG---QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH-WSNKNESEPSFEATRSRNRYSVAYAAQKPW 89 (218)
T ss_pred CcceeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhccCCCCCCeEE-ECCcccccccccccchhhcceEEEEcCCCc
Confidence 46899999999999 99999999999999999999999999999976 55544432111 1112223444444332
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcCC---c---hhHHHHHHhHHHHHH-----------HHHhhhcCChhhHHHHHHHH
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMTT---P---WNIIDELHNWASVLQ-----------DHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~~---p---~~~l~~l~~w~~~l~-----------~~~~~L~lSgGekQRl~LAr 142 (415)
+-. ..+...+.+.. . +.+++.++. ...++ ..+.. +|+||+||++|||
T Consensus 90 ~~~-------------~t~~~nl~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~--LS~G~~qrv~lar 153 (218)
T cd03290 90 LLN-------------ATVEENITFGSPFNKQRYKAVTDACSL-QPDIDLLPFGDQTEIGERGIN--LSGGQRQRICVAR 153 (218)
T ss_pred ccc-------------ccHHHHHhhcCcCCHHHHHHHHHHhCc-HHHHHhCcCccccCcccCCCc--CCHHHHHHHHHHH
Confidence 101 11111111110 0 111222211 11111 22333 4999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHH--HHHHHHHH
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQ--YIRKFCLK 220 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q--~LR~l~~~ 220 (415)
|+..++..+++||| +.++|.+..+.+.+ .++.+ .+
T Consensus 154 al~~~p~illlDEP------------------------------------------t~~LD~~~~~~l~~~~ll~~~-~~ 190 (218)
T cd03290 154 ALYQNTNIVFLDDP------------------------------------------FSALDIHLSDHLMQEGILKFL-QD 190 (218)
T ss_pred HHhhCCCEEEEeCC------------------------------------------ccccCHHHHHHHHHHHHHHHH-hc
Confidence 99988877777775 34666677777776 55555 45
Q ss_pred hCCeEEEeccCC
Q psy13975 221 FGAGLFYTSAKE 232 (415)
Q Consensus 221 ~Gasli~tS~k~ 232 (415)
+|.++|++||..
T Consensus 191 ~~~tii~~sH~~ 202 (218)
T cd03290 191 DKRTLVLVTHKL 202 (218)
T ss_pred CCCEEEEEeCCh
Confidence 799999999664
No 189
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.80 E-value=3e-19 Score=190.58 Aligned_cols=179 Identities=14% Similarity=0.084 Sum_probs=115.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|++|||||||++.|+|++ |++|.++ +++.++.+...+. +..+++..++...+..
T Consensus 363 ~~vL~~i~l~i~~G---~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~-i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAG---QRIALVGPSGAGKTSLLNALLGFL-PYQGSLK-INGIELRELDPESWRKHLSWVGQNPQLPHG 437 (588)
T ss_pred CeeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE-ECCEecccCCHHHHHhheEEecCCCcCCCc
Confidence 46899999999999 999999999999999999999999 9999977 7777776654433 3344444333222223
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHh-HHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHN-WASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~-w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
++.++.. ....+.+..+..+++....+.+++.+.. +...+.+.-. .||||||||++||||+.+++..+++||+++
T Consensus 438 TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~--~LSGGQrQRialARAll~~~~IliLDE~TS- 514 (588)
T PRK11174 438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA--GLSVGQAQRLALARALLQPCQLLLLDEPTA- 514 (588)
T ss_pred CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCC--CCCHHHHHHHHHHHHHhcCCCEEEEeCCcc-
Confidence 3322222 1112222223333333332222332210 0111222222 259999999999999998888888888755
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
.+|.+.-+.|++.|+++. .+.+++.+||+.
T Consensus 515 -----------------------------------------aLD~~te~~i~~~l~~~~--~~~TvIiItHrl 544 (588)
T PRK11174 515 -----------------------------------------SLDAHSEQLVMQALNAAS--RRQTTLMVTHQL 544 (588)
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHHh--CCCEEEEEecCh
Confidence 445555667777888774 478999998663
No 190
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.80 E-value=4.1e-19 Score=169.26 Aligned_cols=181 Identities=13% Similarity=0.115 Sum_probs=105.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC--CCCCcEEEEeceeecCCCCccccceEEEEEecCccc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID--SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA- 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~--~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~- 79 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+. +|++|.+. +.+.++.........+.++.++.+.+.
T Consensus 14 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 89 (248)
T PRK09580 14 KAILRGLNLEVRPG---EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE-FKGKDLLELSPEDRAGEGIFMAFQYPVE 89 (248)
T ss_pred eeeeecceeEEcCC---CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEE-ECCCccccCCHHHHhhcceEEEecCchh
Confidence 46899999999999 999999999999999999999994 68999965 555444322222222233444433321
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHH-------HHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWAS-------VLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~-------~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
+..+.....................-+.+.+.+.+..+.+ ..++... -.||+||+||++||||+..++..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~LS~G~~qrv~laral~~~p~ill 168 (248)
T PRK09580 90 IPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN-VGFSGGEKKRNDILQMAVLEPELCI 168 (248)
T ss_pred ccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC-CCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1111000000000000000000000000000011111111 0111111 1359999999999999998887777
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||| +.++|.+..+.+.+.++.++ +.|.+++++||.
T Consensus 169 LDEP------------------------------------------t~~LD~~~~~~l~~~l~~l~-~~~~tiii~sH~ 204 (248)
T PRK09580 169 LDES------------------------------------------DSGLDIDALKIVADGVNSLR-DGKRSFIIVTHY 204 (248)
T ss_pred EeCC------------------------------------------CccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCC
Confidence 7775 34677788888999999886 468899999954
No 191
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.80 E-value=2.4e-19 Score=187.88 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=110.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~~ 80 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ..++++..+.. ..+
T Consensus 17 ~~~l~~is~~i~~G---e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~-~~~ 91 (501)
T PRK10762 17 VKALSGAALNVYPG---RVMALVGENGAGKSTMMKVLTGIYTRDAGSIL-YLGKEVTFNGPKSSQEAGIGIIHQEL-NLI 91 (501)
T ss_pred eEEeeeeeEEEcCC---eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCHHHHHhCCEEEEEcch-hcc
Confidence 46899999999999 99999999999999999999999999999976 5555543221111 23355543321 111
Q ss_pred hhh--hhhcc-CCCCCCchhhHHHHhc----CCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 81 SNL--LRFAL-NQETLPHTMVMLVVSM----TTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 81 ~~L--l~~~l-~~~~~~~~~v~~~~d~----~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
..+ ..+.. ......... ..+. .....+++.++.. ...++.+..| |+|||||++||||+..++..+++
T Consensus 92 ~~~tv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgG~~qrv~la~al~~~p~lllL 165 (501)
T PRK10762 92 PQLTIAENIFLGREFVNRFG---RIDWKKMYAEADKLLARLNLR-FSSDKLVGEL--SIGEQQMVEIAKVLSFESKVIIM 165 (501)
T ss_pred CCCcHHHHhhhccccccccC---ccCHHHHHHHHHHHHHHcCCC-CCccCchhhC--CHHHHHHHHHHHHHhcCCCEEEE
Confidence 111 11100 000000000 0000 0001122222221 2234445555 99999999999999988877777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|||+ .++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 166 DEPt------------------------------------------~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd 200 (501)
T PRK10762 166 DEPT------------------------------------------DALTDTETESLFRVIRELKS-QGRGIVYISHR 200 (501)
T ss_pred eCCc------------------------------------------CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 7763 46777888899999999864 58899999953
No 192
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.4e-19 Score=162.41 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=127.5
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcccc-ceEEEEEecCcc--
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDH-TRLGVWILDGEP-- 78 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~-~~l~i~~l~g~~-- 78 (415)
++.||+++|++|++| ++..|+||||||||||+.+++.+.+.++|.+. +.+.++.....+.. .++++.-+....
T Consensus 13 ~~~vl~~isl~i~~g---~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~-i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 13 TKVVLDDVSLDIPKG---GITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT-IDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred CEEeeccceeeecCC---ceeEEECCCCccHHHHHHHHHHhccccCceEE-EeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 457899999999999 99999999999999999999999999999976 77777766544332 222222111100
Q ss_pred --cchhhhhhccCCCCCCchhh-HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 79 --AHSNLLRFALNQETLPHTMV-MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 79 --~~~~Ll~~~l~~~~~~~~~v-~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
-.+.|..|.-.| .... .-.-|+......++-+++ ...-++++++| |||||||.-+|..++|.-....+||
T Consensus 89 rlTV~dLv~FGRfP----YSqGRlt~eD~~~I~~aieyl~L-~~l~dryLd~L--SGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 89 RLTVRDLVGFGRFP----YSQGRLTKEDRRIINEAIEYLHL-EDLSDRYLDEL--SGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred eeEHHHHhhcCCCc----ccCCCCchHHHHHHHHHHHHhcc-cchHHHhHHhc--ccchhhhhhhheeeeccCcEEEecC
Confidence 001111111111 0000 000011111123444444 34557888888 9999999999999988777777777
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc-----
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA----- 230 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~----- 230 (415)
| | ..++-.|.--|++.||+++.+.|-+++.+=|
T Consensus 162 P-------------L-----------------------------NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfA 199 (252)
T COG4604 162 P-------------L-----------------------------NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA 199 (252)
T ss_pred c-------------c-----------------------------cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHH
Confidence 5 2 2344467788899999999999988877644
Q ss_pred ----------------CCcccHHHHHHHHHHHHhCCCC
Q psy13975 231 ----------------KEDKNCDLLYKYLAHRLYGFPF 252 (415)
Q Consensus 231 ----------------k~~~n~~~l~~~l~h~l~~~~f 252 (415)
++|..-+.+-..++..+|..+.
T Consensus 200 S~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiydm~i 237 (252)
T COG4604 200 SCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIYDMDI 237 (252)
T ss_pred HhhhhheeeecCCEEEecCCHHHhcCHHHHHHHhcCCc
Confidence 3334445555666666676654
No 193
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.80 E-value=5.7e-19 Score=166.13 Aligned_cols=167 Identities=16% Similarity=0.049 Sum_probs=105.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.. ....++.........+
T Consensus 35 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~-~~g~~~~~------~~~~~~~~~~~tv~en 104 (224)
T cd03220 35 FWALKDVSFEVPRG---ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT-VRGRVSSL------LGLGGGFNPELTGREN 104 (224)
T ss_pred eEEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEchh------hcccccCCCCCcHHHH
Confidence 46899999999999 99999999999999999999999999999965 44433210 0001111110001111
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLF 162 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~ 162 (415)
+. +............ ......+++.+.. ...+++.+..| |+||+||++||||+..++..+++|||
T Consensus 105 l~-~~~~~~~~~~~~~-----~~~~~~~l~~~~l-~~~~~~~~~~L--SgG~~qrv~laral~~~p~llllDEP------ 169 (224)
T cd03220 105 IY-LNGRLLGLSRKEI-----DEKIDEIIEFSEL-GDFIDLPVKTY--SSGMKARLAFAIATALEPDILLIDEV------ 169 (224)
T ss_pred HH-HHHHHcCCCHHHH-----HHHHHHHHHHcCC-hhhhhCChhhC--CHHHHHHHHHHHHHhcCCCEEEEeCC------
Confidence 10 0000000000000 0000112222222 23344555555 99999999999999977777777765
Q ss_pred cCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 163 YSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 163 ~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
..++|.+..+.+.+.|++++.+ |.+++++||.
T Consensus 170 ------------------------------------~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~ 201 (224)
T cd03220 170 ------------------------------------LAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHD 201 (224)
T ss_pred ------------------------------------cccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 3567778888999999999865 8999999954
No 194
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.9e-19 Score=185.80 Aligned_cols=178 Identities=17% Similarity=0.125 Sum_probs=110.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~~ 80 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ..++++...... .+
T Consensus 11 ~~il~~vs~~i~~G---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~-~~ 85 (491)
T PRK10982 11 VKALDNVNLKVRPH---SIHALMGENGAGKSTLLKCLFGIYQKDSGSIL-FQGKEIDFKSSKEALENGISMVHQELN-LV 85 (491)
T ss_pred EEeeeeeeEEEcCC---cEEEEECCCCCCHHHHHHHHcCCCCCCceEEE-ECCEECCCCCHHHHHhCCEEEEecccc-cc
Confidence 46899999999999 99999999999999999999999999999976 5555553221111 233454433211 11
Q ss_pred hhh--hhhccCC-CCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 81 SNL--LRFALNQ-ETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 81 ~~L--l~~~l~~-~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
..+ ....... ........-..........+++.++.+ ...++.+..| |+|||||++||||+..++..+++|||
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgGq~qrv~lA~al~~~p~lllLDEP- 161 (491)
T PRK10982 86 LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-IDPRAKVATL--SVSQMQMIEIAKAFSYNAKIVIMDEP- 161 (491)
T ss_pred cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-CCccCchhhC--CHHHHHHHHHHHHHHhCCCEEEEeCC-
Confidence 111 1110000 000000000000000001122222221 2234455555 99999999999999987877777775
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++. .|.+++++||.
T Consensus 162 -----------------------------------------t~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~ 193 (491)
T PRK10982 162 -----------------------------------------TSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHK 193 (491)
T ss_pred -----------------------------------------CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 346777888889999999864 58899999953
No 195
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.80 E-value=4.9e-19 Score=166.30 Aligned_cols=169 Identities=14% Similarity=0.087 Sum_probs=106.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEec--ee--ecCCCCccc-----cceEEEEEe
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYA--YI--NVSDEYRED-----HTRLGVWIL 74 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~--~~--~v~~~~~~~-----~~~l~i~~l 74 (415)
.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +. +. ++....... ..++++.
T Consensus 22 ~il~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~~~g~~~~~~~~~~~~~~~~~~~~i~~~-- 95 (224)
T TIGR02324 22 PVLKNVSLTVNAG---ECVALSGPSGAGKSTLLKSLYANYLPDSGRIL-VRHEGAWVDLAQASPREVLEVRRKTIGYV-- 95 (224)
T ss_pred EEEecceEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE-EecCCCccchhhcCHHHHHHHHhcceEEE--
Confidence 5899999999999 99999999999999999999999999999965 33 11 221111111 1234443
Q ss_pred cCccc-chhhhhhccCCCCCCchhhH--HHHhcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhh
Q psy13975 75 DGEPA-HSNLLRFALNQETLPHTMVM--LVVSMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 75 ~g~~~-~~~Ll~~~l~~~~~~~~~v~--~~~d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~ 145 (415)
.+.+. +..+ ...+.... ...... ....+++.++......+..+..| |+||+||++||||+.
T Consensus 96 ~q~~~~~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--S~G~~qrl~laral~ 165 (224)
T TIGR02324 96 SQFLRVIPRV--------SALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF--SGGEQQRVNIARGFI 165 (224)
T ss_pred ecccccCCCc--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC--CHHHHHHHHHHHHHh
Confidence 33221 1111 00000000 000000 01122333322111123344445 999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++||| +.++|.+..+.+.+.|++++. .|.++
T Consensus 166 ~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~g~ti 202 (224)
T TIGR02324 166 ADYPILLLDEP------------------------------------------TASLDAANRQVVVELIAEAKA-RGAAL 202 (224)
T ss_pred cCCCEEEEcCC------------------------------------------cccCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 77777777765 356777888899999999865 48999
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++||.
T Consensus 203 i~vsH~ 208 (224)
T TIGR02324 203 IGIFHD 208 (224)
T ss_pred EEEeCC
Confidence 999965
No 196
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=2.8e-19 Score=168.94 Aligned_cols=155 Identities=14% Similarity=0.182 Sum_probs=113.6
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
.+++||||+|.+| ++++|||++|||||||-++|.|+++|+.|.++ |.+.++....
T Consensus 27 ~avd~Vsf~i~~g---e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~-f~g~~i~~~~--------------------- 81 (268)
T COG4608 27 KAVDGVSFSIKEG---ETLGLVGESGCGKSTLGRLILGLEEPTSGEIL-FEGKDITKLS--------------------- 81 (268)
T ss_pred EEecceeEEEcCC---CEEEEEecCCCCHHHHHHHHHcCcCCCCceEE-EcCcchhhcc---------------------
Confidence 5799999999999 99999999999999999999999999999976 6554432211
Q ss_pred hhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhcccc
Q psy13975 84 LRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFY 163 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~ 163 (415)
..... .+...+++.++.-.+.+.++..+| ||||+||+.||||+..+|..+.+||+.|
T Consensus 82 ----------~~~~~------~~v~elL~~Vgl~~~~~~ryPhel--SGGQrQRi~IARALal~P~liV~DEpvS----- 138 (268)
T COG4608 82 ----------KEERR------ERVLELLEKVGLPEEFLYRYPHEL--SGGQRQRIGIARALALNPKLIVADEPVS----- 138 (268)
T ss_pred ----------hhHHH------HHHHHHHHHhCCCHHHhhcCCccc--CchhhhhHHHHHHHhhCCcEEEecCchh-----
Confidence 00000 001123444444345677888888 9999999999999998888888888754
Q ss_pred CccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHH
Q psy13975 164 SSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 164 ~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l 243 (415)
.++.--...|+..|+.+-.++|.+++|.|| ++.. .+|+
T Consensus 139 -------------------------------------aLDvSiqaqIlnLL~dlq~~~~lt~lFIsH----DL~v-v~~i 176 (268)
T COG4608 139 -------------------------------------ALDVSVQAQILNLLKDLQEELGLTYLFISH----DLSV-VRYI 176 (268)
T ss_pred -------------------------------------hcchhHHHHHHHHHHHHHHHhCCeEEEEEE----EHHh-hhhh
Confidence 222334567888899999999999999994 4432 3555
Q ss_pred HHHHh
Q psy13975 244 AHRLY 248 (415)
Q Consensus 244 ~h~l~ 248 (415)
.+++.
T Consensus 177 sdri~ 181 (268)
T COG4608 177 SDRIA 181 (268)
T ss_pred cccEE
Confidence 55443
No 197
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.8e-19 Score=187.71 Aligned_cols=179 Identities=15% Similarity=0.024 Sum_probs=110.7
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecC--ccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDG--EPA 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g--~~~ 79 (415)
.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ..+++++.+.. ...
T Consensus 277 ~~l~~isl~i~~G---e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 352 (510)
T PRK09700 277 KKVRDISFSVCRG---EILGFAGLVGSGRTELMNCLFGVDKRAGGEIR-LNGKDISPRSPLDAVKKGMAYITESRRDNGF 352 (510)
T ss_pred CcccceeEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE-ECCEECCCCCHHHHHHCCcEEccCccccCCC
Confidence 4799999999999 99999999999999999999999999999976 5555543211111 22344443321 011
Q ss_pred chhh--hhhccCCCCCC--chh----hH-HHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 80 HSNL--LRFALNQETLP--HTM----VM-LVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 80 ~~~L--l~~~l~~~~~~--~~~----v~-~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
+..+ .........+. ... .. ...+......+++.++...+..++.+..| |+|||||+.||||+..++..
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 353 FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITEL--SGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred cCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccC--ChHHHHHHHHHHHHhcCCCE
Confidence 2111 11111000000 000 00 00000001122333322102234455555 99999999999999987777
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++||| +.++|....+.+.+.|++++. .|.+++++||
T Consensus 431 LlLDEP------------------------------------------t~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsH 467 (510)
T PRK09700 431 IIFDEP------------------------------------------TRGIDVGAKAEIYKVMRQLAD-DGKVILMVSS 467 (510)
T ss_pred EEECCC------------------------------------------CCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcC
Confidence 777775 346777888999999999985 5999999994
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 468 d 468 (510)
T PRK09700 468 E 468 (510)
T ss_pred C
Confidence 3
No 198
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.80 E-value=4e-19 Score=182.72 Aligned_cols=184 Identities=17% Similarity=0.197 Sum_probs=123.5
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCC---CccccceEEEEEecCcccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDE---YREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~---~~~~~~~l~i~~l~g~~~~ 80 (415)
.+++||||+|.+| ++++|||++|||||||.++|+|+.+|+.|.+. |.+.+..-. ....+.++.+.++++...
T Consensus 305 ~Av~~VSf~l~~G---E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~-~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S- 379 (539)
T COG1123 305 KAVDDVSFDLREG---ETLGLVGESGSGKSTLARILAGLLPPSSGSII-FDGQDLDLTGGELRRLRRRIQMVFQDPYSS- 379 (539)
T ss_pred eeeeeeeeEecCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-EeCcccccccchhhhhhhheEEEEeCcccc-
Confidence 5799999999999 99999999999999999999999999999976 555442111 111234566666654322
Q ss_pred hhhhhhccCCC-CCCchhhHHHHhcCC----------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 81 SNLLRFALNQE-TLPHTMVMLVVSMTT----------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 81 ~~Ll~~~l~~~-~~~~~~v~~~~d~~~----------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
| ++. ++.+.. ...+.+.. ...+++.+.+-.+.+.+++.+| |||||||++|||||..+|.
T Consensus 380 --L-----nPr~tV~~~i-~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~el--SGGQrQRvaIARALa~~P~ 449 (539)
T COG1123 380 --L-----NPRMTVGDIL-AEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHEL--SGGQRQRVAIARALALEPK 449 (539)
T ss_pred --c-----CccccHHHHH-HhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhc--CcchhHHHHHHHHHhcCCC
Confidence 2 111 111110 00111000 1122344433334577777777 9999999999999999999
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||+++ .+|.--...|.+.|..+-.+.|.+++|+|
T Consensus 450 lli~DEp~S------------------------------------------aLDvsvqa~VlnLl~~lq~e~g~t~lfIS 487 (539)
T COG1123 450 LLILDEPVS------------------------------------------ALDVSVQAQVLNLLKDLQEELGLTYLFIS 487 (539)
T ss_pred EEEecCCcc------------------------------------------ccCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 888888755 23334456677888999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHhC
Q psy13975 230 AKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 230 ~k~~~n~~~l~~~l~h~l~~ 249 (415)
|++.. .+++.|++.-
T Consensus 488 ----HDl~v-V~~i~drv~v 502 (539)
T COG1123 488 ----HDLAV-VRYIADRVAV 502 (539)
T ss_pred ----CCHHH-HHhhCceEEE
Confidence 55544 3556566543
No 199
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=5.9e-19 Score=160.10 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=51.8
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED 65 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~ 65 (415)
++.+|++|+|++.+| |.++|||||||||||||+.|+|...|++|+.. |.+.+...+...+
T Consensus 13 Gr~ll~~vsl~~~pG---ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~-~~g~~l~~~~~~~ 72 (259)
T COG4559 13 GRRLLDGVSLDLRPG---EVLAILGPNGAGKSTLLKALSGELSPDSGEVT-LNGVPLNSWPPEE 72 (259)
T ss_pred cceeccCcceeccCC---cEEEEECCCCccHHHHHHHhhCccCCCCCeEe-eCCcChhhCCHHH
Confidence 467899999999999 99999999999999999999999999999966 6666665554444
No 200
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=5.9e-19 Score=163.45 Aligned_cols=156 Identities=12% Similarity=0.007 Sum_probs=98.8
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc--h
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH--S 81 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~--~ 81 (415)
.+|+++||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+ ++++. .+++.+ .
T Consensus 19 ~il~~~s~~i~~G---~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~-~~g------------~i~~~--~q~~~l~~~ 80 (204)
T cd03250 19 FTLKDINLEVPKG---ELVAIVGPVGSGKSSLLSALLGELEKLSGSVS-VPG------------SIAYV--SQEPWIQNG 80 (204)
T ss_pred ceeeeeeEEECCC---CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE-EcC------------EEEEE--ecCchhccC
Confidence 6999999999999 99999999999999999999999999999965 322 33333 322211 1
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHh--HHHH--------HHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHN--WASV--------LQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~--w~~~--------l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
.+..+......+... ..+...+.+.. |... +++.... +|+||+||++||||+..++..+
T Consensus 81 t~~enl~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--lS~G~~qrv~laral~~~p~ll 149 (204)
T cd03250 81 TIRENILFGKPFDEE---------RYEKVIKACALEPDLEILPDGDLTEIGEKGIN--LSGGQKQRISLARAVYSDADIY 149 (204)
T ss_pred cHHHHhccCCCcCHH---------HHHHHHHHcCcHHHHHhccCcccceecCCCCc--CCHHHHHHHHHHHHHhcCCCEE
Confidence 111111110000000 00111111111 1111 1112233 4999999999999999888877
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHH-HHHHHHHHhCCeEEEecc
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQ-YIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q-~LR~l~~~~Gasli~tS~ 230 (415)
++|||+ .++|.+..+.+.+ .++.++.+ |.+++++||
T Consensus 150 llDEP~------------------------------------------~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh 186 (204)
T cd03250 150 LLDDPL------------------------------------------SAVDAHVGRHIFENCILGLLLN-NKTRILVTH 186 (204)
T ss_pred EEeCcc------------------------------------------ccCCHHHHHHHHHHHHHHhccC-CCEEEEEeC
Confidence 777753 4566666666666 56666554 899999996
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 187 ~ 187 (204)
T cd03250 187 Q 187 (204)
T ss_pred C
Confidence 5
No 201
>KOG0058|consensus
Probab=99.80 E-value=2e-19 Score=187.90 Aligned_cols=154 Identities=15% Similarity=0.141 Sum_probs=108.9
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAH 80 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~ 80 (415)
+.+||+|+||+|++| |+++||||+|+||||+++.|..+++|++|.++ .++.++++.+... +.+++++-+....+-
T Consensus 480 ~~~Vlk~lsfti~pG---e~vALVGPSGsGKSTiasLL~rfY~PtsG~Il-lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPG---EVVALVGPSGSGKSTIASLLLRFYDPTSGRIL-LDGVPISDINHKYLRRKIGLVGQEPVLFS 555 (716)
T ss_pred CchhhcCceeeeCCC---CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE-ECCeehhhcCHHHHHHHeeeeeccceeec
Confidence 346999999999999 99999999999999999999999999999987 8888887755432 344444433322233
Q ss_pred hhhhhhc-cCCCCCCchhhHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 81 SNLLRFA-LNQETLPHTMVMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 81 ~~Ll~~~-l~~~~~~~~~v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
..+.++. +.-....+..+.....+.+.+.++..+ +.|...+.++-.+| |||||||++|||||.++|..+++||.+|
T Consensus 556 ~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL--SGGQKQRIAIARALlr~P~VLILDEATS 633 (716)
T KOG0058|consen 556 GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL--SGGQKQRIAIARALLRNPRVLILDEATS 633 (716)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc--cchHHHHHHHHHHHhcCCCEEEEechhh
Confidence 3342222 222233444444455555655655555 33444455554455 9999999999999999999999999877
Q ss_pred hcc
Q psy13975 159 FYL 161 (415)
Q Consensus 159 ~~~ 161 (415)
|.|
T Consensus 634 ALD 636 (716)
T KOG0058|consen 634 ALD 636 (716)
T ss_pred hcc
Confidence 443
No 202
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.6e-18 Score=165.80 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=106.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCC--CCc-cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSD--EYR-EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~--~~~-~~~~~l~i~~l 74 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++.. ... ....++++...
T Consensus 17 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~~~q 92 (253)
T PRK14267 17 NHVIKGVDLKIPQN---GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR-LFGRNIYSPDVDPIEVRREVGMVFQ 92 (253)
T ss_pred eeeeecceEEEcCC---CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE-ECCEEccccccChHHHhhceeEEec
Confidence 46899999999999 99999999999999999999999887 489866 55555431 111 11223444332
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHH--HhcC-Cc-------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLV--VSMT-TP-------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCC 141 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~--~d~~-~p-------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LA 141 (415)
... .+..+ .+.+...... ..+. .. ..+++.++.+ ...+++.+..| |+||+||++||
T Consensus 93 ~~~-~~~~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~G~~qrv~la 161 (253)
T PRK14267 93 YPN-PFPHL--------TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNL--SGGQRQRLVIA 161 (253)
T ss_pred CCc-cCCCC--------cHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhC--CHHHHHHHHHH
Confidence 211 11111 1111000000 0000 00 1122222211 01233445555 99999999999
Q ss_pred HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh
Q psy13975 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF 221 (415)
Q Consensus 142 rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~ 221 (415)
||+..++..+++||| ..++|.+..+.+.+.|++++.
T Consensus 162 ral~~~p~llllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~-- 197 (253)
T PRK14267 162 RALAMKPKILLMDEP------------------------------------------TANIDPVGTAKIEELLFELKK-- 197 (253)
T ss_pred HHHhcCCCEEEEcCC------------------------------------------CccCCHHHHHHHHHHHHHHhh--
Confidence 999987777777775 346777788899999999853
Q ss_pred CCeEEEeccC
Q psy13975 222 GAGLFYTSAK 231 (415)
Q Consensus 222 Gasli~tS~k 231 (415)
+.+++++||.
T Consensus 198 ~~tiii~sH~ 207 (253)
T PRK14267 198 EYTIVLVTHS 207 (253)
T ss_pred CCEEEEEECC
Confidence 6899999943
No 203
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.9e-19 Score=172.72 Aligned_cols=174 Identities=12% Similarity=0.058 Sum_probs=106.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCC--Cc-cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDE--YR-EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~--~~-~~~~~l~i~~l 74 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+ |++|.+. +.+.++... .. ..+.++++.
T Consensus 26 ~~il~~is~~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~-~~g~~i~~~~~~~~~~~~~i~~v-- 99 (269)
T PRK14259 26 FEAVKNVFCDIPRG---KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVL-FDGTDLYDPRVDPVEVRRRIGMV-- 99 (269)
T ss_pred EEEEcceEEEEcCC---CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-ECCEEcccccCCHHHHhhceEEE--
Confidence 35899999999999 9999999999999999999999976 5889866 555554311 11 112234443
Q ss_pred cCccc-ch-hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHH---HHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 75 DGEPA-HS-NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWA---SVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 75 ~g~~~-~~-~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~---~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.+++. |. .+..+............ .. ......+++.++.|. ..+++.+..| |+||+||++||||+..++.
T Consensus 100 ~q~~~l~~~tv~enl~~~~~~~~~~~--~~-~~~~~~~l~~~~l~~~l~~~~~~~~~~L--S~G~~qrl~laral~~~p~ 174 (269)
T PRK14259 100 FQQPNPFPKSIYENIAFGARINGYTG--DM-DELVERSLRKAAVWDECKDKLNESGYSL--SGGQQQRLCIARTIAIEPE 174 (269)
T ss_pred ccCCccchhhHHHHHhhhhhhcCCcH--HH-HHHHHHHHHHhCCcchhhhhhCCCcccC--CHHHHHHHHHHHHHhcCCC
Confidence 33221 11 11111000000000000 00 000012233333321 1233344445 9999999999999998777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+..+.+++.|++++. +.+++++|
T Consensus 175 lllLDEP------------------------------------------t~gLD~~~~~~l~~~l~~~~~--~~tiiivt 210 (269)
T PRK14259 175 VILMDEP------------------------------------------CSALDPISTLKIEETMHELKK--NFTIVIVT 210 (269)
T ss_pred EEEEcCC------------------------------------------CccCCHHHHHHHHHHHHHHhc--CCEEEEEe
Confidence 7777775 346777888899999999853 78999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 211 H~ 212 (269)
T PRK14259 211 HN 212 (269)
T ss_pred CC
Confidence 54
No 204
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.6e-19 Score=186.53 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=109.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~~ 80 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... +..+++..+... .+
T Consensus 17 ~~il~~isl~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-~~g~~i~~~~~~~~~~~~i~~v~q~~~-~~ 91 (501)
T PRK11288 17 VKALDDISFDCRAG---QVHALMGENGAGKSTLLKILSGNYQPDAGSIL-IDGQEMRFASTTAALAAGVAIIYQELH-LV 91 (501)
T ss_pred EEEEeeeeEEEeCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE-ECCEECCCCCHHHHHhCCEEEEEechh-cc
Confidence 35899999999999 99999999999999999999999999999976 5555553221111 223444433211 11
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcC---------Cc-------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMT---------TP-------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~---------~p-------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
.. .++...+.+. .. ..+++.++.. ...++.+..| |+|||||++||||+
T Consensus 92 ~~-------------~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgGq~qrv~laral 155 (501)
T PRK11288 92 PE-------------MTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYL--SIGQRQMVEIAKAL 155 (501)
T ss_pred CC-------------CCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhC--CHHHHHHHHHHHHH
Confidence 11 1111111100 00 1122222221 1223444555 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|.+..+.+.+.|++++. .|.+
T Consensus 156 ~~~p~lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~-~g~t 192 (501)
T PRK11288 156 ARNARVIAFDEP------------------------------------------TSSLSAREIEQLFRVIRELRA-EGRV 192 (501)
T ss_pred HhCCCEEEEcCC------------------------------------------CCCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 987777777775 346777888899999999864 5899
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 193 iiiitHd 199 (501)
T PRK11288 193 ILYVSHR 199 (501)
T ss_pred EEEEeCC
Confidence 9999953
No 205
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.79 E-value=7.2e-19 Score=167.69 Aligned_cols=167 Identities=14% Similarity=0.133 Sum_probs=107.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC-----CcEEEEeceeecCCCC--c-cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE-----KGLALEYAYINVSDEY--R-EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~-----~G~il~~~~~~v~~~~--~-~~~~~l~i~~l 74 (415)
..+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+ +|.+. +.+.++.... . .....+++.
T Consensus 14 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~v-- 87 (247)
T TIGR00972 14 KEALKNINLDIPKN---QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL-FDGQDIYDKKIDVVELRRRVGMV-- 87 (247)
T ss_pred eeeecceeEEECCC---CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEE-ECCEEccccccchHHHHhheEEE--
Confidence 35899999999999 999999999999999999999999988 89976 6665553211 1 112234443
Q ss_pred cCccc-chhhhhhccCCCCCCchhhHHHHhcC---C-------chhHHHHHHhH--H-HHHHHHHhhhcCChhhHHHHHH
Q psy13975 75 DGEPA-HSNLLRFALNQETLPHTMVMLVVSMT---T-------PWNIIDELHNW--A-SVLQDHIDSLNIGAHDYQAGRC 140 (415)
Q Consensus 75 ~g~~~-~~~Ll~~~l~~~~~~~~~v~~~~d~~---~-------p~~~l~~l~~w--~-~~l~~~~~~L~lSgGekQRl~L 140 (415)
.+... +. + ...+...+ ..... . ...+++.++.. . ..+++.+..| |+||+||++|
T Consensus 88 ~q~~~~~~-~--------tv~e~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--SgG~~qrv~l 155 (247)
T TIGR00972 88 FQKPNPFP-M--------SIYDNIAY-GPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGL--SGGQQQRLCI 155 (247)
T ss_pred ecCcccCC-C--------CHHHHHHh-HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccC--CHHHHHHHHH
Confidence 32221 11 1 11111000 00000 0 01122222221 0 2233444445 9999999999
Q ss_pred HHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH
Q psy13975 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK 220 (415)
Q Consensus 141 ArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~ 220 (415)
|||+..++..+++||| +.++|......+.+.|+.++.
T Consensus 156 aral~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~- 192 (247)
T TIGR00972 156 ARALAVEPEVLLLDEP------------------------------------------TSALDPIATGKIEELIQELKK- 192 (247)
T ss_pred HHHHhcCCCEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHh-
Confidence 9999977777777765 346777888889999999865
Q ss_pred hCCeEEEeccC
Q psy13975 221 FGAGLFYTSAK 231 (415)
Q Consensus 221 ~Gasli~tS~k 231 (415)
+.+++++||.
T Consensus 193 -~~tiiivsH~ 202 (247)
T TIGR00972 193 -KYTIVIVTHN 202 (247)
T ss_pred -cCeEEEEecC
Confidence 4789999943
No 206
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.9e-19 Score=172.49 Aligned_cols=171 Identities=11% Similarity=0.053 Sum_probs=106.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCC--c-cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEY--R-EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~--~-~~~~~l~i~~l 74 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+| +.|.+. +.+.++.... . ..+..+++...
T Consensus 32 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~-~~g~~i~~~~~~~~~~~~~i~~v~q 107 (267)
T PRK14235 32 KQALFDVDLDIPEK---TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKIT-LDGEDIYDPRLDVVELRARVGMVFQ 107 (267)
T ss_pred EEEEEEEEEEEcCC---CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE-ECCEECcccccchHHHhhceEEEec
Confidence 35899999999999 99999999999999999999999874 789976 6665553211 1 11233444432
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHHHhc--CC------chhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSM--TT------PWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~--~~------p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
........+....... .....+ .. .+.+++.++.. ...+++....| |+||+||++||||
T Consensus 108 ~~~~~~~tv~enl~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--SgGq~qrv~lara 177 (267)
T PRK14235 108 KPNPFPKSIYENVAYG--------PRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL--SGGQQQRLCIARA 177 (267)
T ss_pred CCCCCCCcHHHHHHHH--------HHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC--CHHHHHHHHHHHH
Confidence 2111101110000000 000000 00 01122222221 01223334445 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++||| +.++|....+.+.+.|+.++. +.
T Consensus 178 l~~~p~lllLDEP------------------------------------------t~~LD~~~~~~l~~~L~~l~~--~~ 213 (267)
T PRK14235 178 IAVSPEVILMDEP------------------------------------------CSALDPIATAKVEELIDELRQ--NY 213 (267)
T ss_pred HHcCCCEEEEeCC------------------------------------------CcCCCHHHHHHHHHHHHHHhc--CC
Confidence 9988877777775 346777888899999999854 68
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 214 tiiivtH~ 221 (267)
T PRK14235 214 TIVIVTHS 221 (267)
T ss_pred eEEEEEcC
Confidence 99999943
No 207
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.8e-19 Score=169.06 Aligned_cols=170 Identities=12% Similarity=0.054 Sum_probs=106.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCc-cccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYR-EDHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~-~~~~~l~i~~l~g 76 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+| ++|++. +.+.++..... ....+..+.++.+
T Consensus 25 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q 100 (258)
T PRK14268 25 KQALKNVSMQIPKN---SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS-IEGEDIYEPDVDVVELRKNVGMVFQ 100 (258)
T ss_pred eeeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEE-ECCEEcccccchHHHHhhhEEEEec
Confidence 46899999999999 99999999999999999999999874 789976 55555432111 1111222333333
Q ss_pred ccc-chhhhhhccCCCCCCchhhHHHHhcCC--------chhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPA-HSNLLRFALNQETLPHTMVMLVVSMTT--------PWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~-~~~Ll~~~l~~~~~~~~~v~~~~d~~~--------p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
... +. + ...+...+....... ...+++.++.+ ...+++.+..| |+||+||++||||+
T Consensus 101 ~~~~~~-~--------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--SgG~~qrv~laral 169 (258)
T PRK14268 101 KPNPFP-M--------SIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSL--SGGQQQRLCIARTL 169 (258)
T ss_pred CCccCc-c--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhC--CHHHHHHHHHHHHH
Confidence 221 11 1 111100000000000 01122222221 11233344445 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|.+..+.+.+.|++++ + |.+
T Consensus 170 ~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~l~-~-~~t 205 (258)
T PRK14268 170 AVKPKIILFDEP------------------------------------------TSALDPISTARIEDLIMNLK-K-DYT 205 (258)
T ss_pred HcCCCEEEEeCC------------------------------------------CcccCHHHHHHHHHHHHHHh-h-CCE
Confidence 977777777765 35777788899999999985 3 789
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 206 iiivsH~ 212 (258)
T PRK14268 206 IVIVTHN 212 (258)
T ss_pred EEEEECC
Confidence 9999943
No 208
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.2e-19 Score=169.05 Aligned_cols=175 Identities=11% Similarity=0.019 Sum_probs=106.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCC--c-cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEY--R-EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~--~-~~~~~l~i~~l 74 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.. |++|.+. +.+.++.... . ..+.++++.
T Consensus 26 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~-- 99 (260)
T PRK10744 26 FHALKNINLDIAKN---QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL-LDGENILTPKQDIALLRAKVGMV-- 99 (260)
T ss_pred eEEeeceeEEEcCC---CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE-ECCEEccccccchHHHhcceEEE--
Confidence 35899999999999 9999999999999999999999976 4789866 5555553211 1 112234443
Q ss_pred cCccc-ch-hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 75 DGEPA-HS-NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 75 ~g~~~-~~-~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
.+++. +. .+..... ............ . ..+.+.+++.++.+ ...+++....| |+||+||++||||+..++
T Consensus 100 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~-~-~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~Gq~qrv~laral~~~p 175 (260)
T PRK10744 100 FQKPTPFPMSIYDNIAFGVRLFEKLSRAE-M-DERVEWALTKAALWNEVKDKLHQSGYSL--SGGQQQRLCIARGIAIRP 175 (260)
T ss_pred ecCCccCcCcHHHHHhhhHhhcCCCCHHH-H-HHHHHHHHHHcCCChhhHHHHhcCCCCC--CHHHHHHHHHHHHHHCCC
Confidence 33221 11 1100000 000000000000 0 00011222332221 11233344445 999999999999999888
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++|||+ .++|.+..+.+.+.|++++ + |.+++++
T Consensus 176 ~lllLDEPt------------------------------------------~~LD~~~~~~l~~~L~~~~-~-~~tiii~ 211 (260)
T PRK10744 176 EVLLLDEPC------------------------------------------SALDPISTGRIEELITELK-Q-DYTVVIV 211 (260)
T ss_pred CEEEEcCCC------------------------------------------ccCCHHHHHHHHHHHHHHh-c-CCeEEEE
Confidence 777777753 4667778889999999985 3 7899999
Q ss_pred ccC
Q psy13975 229 SAK 231 (415)
Q Consensus 229 S~k 231 (415)
||.
T Consensus 212 sH~ 214 (260)
T PRK10744 212 THN 214 (260)
T ss_pred eCC
Confidence 954
No 209
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.79 E-value=8.2e-19 Score=161.48 Aligned_cols=148 Identities=13% Similarity=0.068 Sum_probs=103.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC--CCCCcEEEEeceeecCCCCccccceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID--SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~--~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~ 80 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+. +|+.|.+. |.+.++... ....++++ +.+...
T Consensus 22 ~~~l~~~~~~i~~G---e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~-~~g~~~~~~--~~~~~i~~--~~q~~~- 92 (194)
T cd03213 22 KQLLKNVSGKAKPG---ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL-INGRPLDKR--SFRKIIGY--VPQDDI- 92 (194)
T ss_pred ccceecceEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE-ECCEeCchH--hhhheEEE--ccCccc-
Confidence 57999999999999 999999999999999999999999 99999976 555554321 11222332 222111
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFY 160 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~ 160 (415)
.+....+. +.+..+ .. +.. ||+||+||++||||+..++..+++|||
T Consensus 93 -----------~~~~~t~~------------~~i~~~-~~----~~~--LS~G~~qrv~laral~~~p~illlDEP---- 138 (194)
T cd03213 93 -----------LHPTLTVR------------ETLMFA-AK----LRG--LSGGERKRVSIALELVSNPSLLFLDEP---- 138 (194)
T ss_pred -----------CCCCCcHH------------HHHHHH-HH----hcc--CCHHHHHHHHHHHHHHcCCCEEEEeCC----
Confidence 11121211 111111 00 113 499999999999999977777777765
Q ss_pred cccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 161 LFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 161 ~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
..++|....+.+.+.|+++.. .|.+++++||..
T Consensus 139 --------------------------------------~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~ 171 (194)
T cd03213 139 --------------------------------------TSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQP 171 (194)
T ss_pred --------------------------------------CcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCc
Confidence 346777788889999998865 489999999653
No 210
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.79 E-value=4.1e-19 Score=161.10 Aligned_cols=141 Identities=18% Similarity=0.161 Sum_probs=100.5
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|++. +.+.++..........+++. .+++.+
T Consensus 16 ~~l~~i~~~i~~G---e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~~--~q~~~~--- 86 (178)
T cd03247 16 QVLKNLSLELKQG---EKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT-LDGVPVSDLEKALSSLISVL--NQRPYL--- 86 (178)
T ss_pred cceEEEEEEEcCC---CEEEEECCCCCCHHHHHHHHhccCCCCCCEEE-ECCEEHHHHHHHHHhhEEEE--ccCCee---
Confidence 6899999999999 99999999999999999999999999999965 55444322100111223332 221110
Q ss_pred hhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhcccc
Q psy13975 84 LRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFY 163 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~ 163 (415)
+ ... +.+.+ ...| |+||+||++||||+..++..+++|||+
T Consensus 87 ---------~-~~t------------v~~~i----------~~~L--S~G~~qrv~laral~~~p~~lllDEP~------ 126 (178)
T cd03247 87 ---------F-DTT------------LRNNL----------GRRF--SGGERQRLALARILLQDAPIVLLDEPT------ 126 (178)
T ss_pred ---------e-ccc------------HHHhh----------cccC--CHHHHHHHHHHHHHhcCCCEEEEECCc------
Confidence 0 001 11111 4455 999999999999999888777777753
Q ss_pred CccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 164 SSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 164 ~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.++|.+..+.+.+.|++++ .|.+++++||.
T Consensus 127 ------------------------------------~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~ 156 (178)
T cd03247 127 ------------------------------------VGLDPITERQLLSLIFEVL--KDKTLIWITHH 156 (178)
T ss_pred ------------------------------------ccCCHHHHHHHHHHHHHHc--CCCEEEEEecC
Confidence 4666777888999999885 38899999954
No 211
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=7e-19 Score=163.31 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=107.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
.++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... .+..+.++.+++.+
T Consensus 21 ~~~l~~isl~i~~G---~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~-~~~~i~~v~q~~~~-- 93 (207)
T cd03369 21 PPVLKNVSFKVKAG---EKIGIVGRTGAGKSTLILALFRFLEAEEGKIE-IDGIDISTIPLED-LRSSLTIIPQDPTL-- 93 (207)
T ss_pred cccccCceEEECCC---CEEEEECCCCCCHHHHHHHHhcccCCCCCeEE-ECCEEhHHCCHHH-HHhhEEEEecCCcc--
Confidence 36899999999999 99999999999999999999999999999976 5555543222111 12234444433221
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLF 162 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~ 162 (415)
+. ..+...+.+..... .+.+..+.+ +++....| |+||+||++||||+..++..+++|||
T Consensus 94 ----------~~-~tv~~~l~~~~~~~-~~~~~~~l~-~~~~~~~L--S~G~~qrv~laral~~~p~llllDEP------ 152 (207)
T cd03369 94 ----------FS-GTIRSNLDPFDEYS-DEEIYGALR-VSEGGLNL--SQGQRQLLCLARALLKRPRVLVLDEA------ 152 (207)
T ss_pred ----------cC-ccHHHHhcccCCCC-HHHHHHHhh-ccCCCCcC--CHHHHHHHHHHHHHhhCCCEEEEeCC------
Confidence 00 01111111111000 011111111 33444555 99999999999999977777777765
Q ss_pred cCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 163 YSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 163 ~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|+.+. .|.+++++||.
T Consensus 153 ------------------------------------~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~ 183 (207)
T cd03369 153 ------------------------------------TASIDYATDALIQKTIREEF--TNSTILTIAHR 183 (207)
T ss_pred ------------------------------------cccCCHHHHHHHHHHHHHhc--CCCEEEEEeCC
Confidence 34677788888999999874 38999999954
No 212
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=167.45 Aligned_cols=171 Identities=10% Similarity=0.028 Sum_probs=106.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCC-ccccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEY-REDHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~-~~~~~~l~i~~l~g 76 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++.... .....+..+.++.+
T Consensus 17 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~-~~g~~~~~~~~~~~~~~~~i~~~~q 92 (258)
T PRK14241 17 FHAVEDVNLNIEPR---SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVL-LDGEDLYGPGVDPVAVRRTIGMVFQ 92 (258)
T ss_pred EeeeeeeeEEEcCC---cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEE-ECCEeccccccChHHHhcceEEEcc
Confidence 46899999999999 99999999999999999999999864 689866 5555542110 01112223343333
Q ss_pred cc-cchhhhhhccCCCCCCchhhHHHHhcC--Cc-------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 77 EP-AHSNLLRFALNQETLPHTMVMLVVSMT--TP-------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 77 ~~-~~~~Ll~~~l~~~~~~~~~v~~~~d~~--~p-------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
.. .+..+ .+.+.......... .. ..+++.++.+ ...+++.+..| |+||+||++||||
T Consensus 93 ~~~~~~~~--------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~G~~qrv~lara 162 (258)
T PRK14241 93 RPNPFPTM--------SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGL--SGGQQQRLCIARA 162 (258)
T ss_pred ccccCCCC--------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC--CHHHHHHHHHHHH
Confidence 22 11111 11111000000000 00 1122222221 12233444555 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++||| ..++|.+..+.+.+.|++++. +.
T Consensus 163 l~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~--~~ 198 (258)
T PRK14241 163 IAVEPDVLLMDEP------------------------------------------CSALDPISTLAIEDLINELKQ--DY 198 (258)
T ss_pred HhcCCCEEEEcCC------------------------------------------CccCCHHHHHHHHHHHHHHhc--CC
Confidence 9987777777775 346777888899999999863 68
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 199 tviivsH~ 206 (258)
T PRK14241 199 TIVIVTHN 206 (258)
T ss_pred EEEEEecC
Confidence 99999943
No 213
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.79 E-value=6.9e-19 Score=168.93 Aligned_cols=167 Identities=10% Similarity=0.053 Sum_probs=105.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAH- 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~- 80 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.++ +.+.++....... ..++++ +.+.+.+
T Consensus 34 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-i~g~~i~~~~~~~~~~~i~~--v~q~~~l~ 107 (257)
T cd03288 34 KPVLKHVKAYIKPG---QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV-IDGIDISKLPLHTLRSRLSI--ILQDPILF 107 (257)
T ss_pred CcceeEEEEEEcCC---CEEEEECCCCCCHHHHHHHHHcccCCCCCeEE-ECCEEhhhCCHHHHhhhEEE--ECCCCccc
Confidence 46899999999999 99999999999999999999999999999976 5555554322211 223343 3333211
Q ss_pred h-hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHH-----------HHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 81 S-NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQD-----------HIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 81 ~-~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~-----------~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
. .+.............. .+.+++.... .+.++. .... ||+||+||++||||+..++
T Consensus 108 ~~tv~~nl~~~~~~~~~~---------~~~~l~~~~l-~~~~~~~~~~l~~~~~~~~~~--LS~G~~qrl~laral~~~p 175 (257)
T cd03288 108 SGSIRFNLDPECKCTDDR---------LWEALEIAQL-KNMVKSLPGGLDAVVTEGGEN--FSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred ccHHHHhcCcCCCCCHHH---------HHHHHHHhCc-HHHHhhcccccCcEeccCCCc--CCHHHHHHHHHHHHHhcCC
Confidence 1 1110000000000000 0111111111 111221 2223 4999999999999999777
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++||| +.+++.+..+.+.+.++.++ .|.+++++
T Consensus 176 ~llllDEP------------------------------------------t~gLD~~~~~~l~~~l~~~~--~~~tiii~ 211 (257)
T cd03288 176 SILIMDEA------------------------------------------TASIDMATENILQKVVMTAF--ADRTVVTI 211 (257)
T ss_pred CEEEEeCC------------------------------------------ccCCCHHHHHHHHHHHHHhc--CCCEEEEE
Confidence 77777765 34667777888888888864 48999999
Q ss_pred ccC
Q psy13975 229 SAK 231 (415)
Q Consensus 229 S~k 231 (415)
||.
T Consensus 212 sh~ 214 (257)
T cd03288 212 AHR 214 (257)
T ss_pred ecC
Confidence 954
No 214
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1e-18 Score=183.37 Aligned_cols=178 Identities=18% Similarity=0.165 Sum_probs=110.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEeceeecCCCCccc--cceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP--EKGLALEYAYINVSDEYRED--HTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p--~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~ 78 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++....... +..+++..+...
T Consensus 18 ~~il~~isl~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~- 92 (506)
T PRK13549 18 VKALDNVSLKVRAG---EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEII-FEGEELQASNIRDTERAGIAIIHQELA- 92 (506)
T ss_pred eEeecceeEEEeCC---eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE-ECCEECCCCCHHHHHHCCeEEEEeccc-
Confidence 46899999999999 99999999999999999999999886 799976 5665553322111 233555543321
Q ss_pred cchhh--hhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 79 AHSNL--LRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 79 ~~~~L--l~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
.+..+ ..+.. ..........-..........+++.++. ....++.+..| |+|||||++||||+..++..+++||
T Consensus 93 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgGqkqrv~la~al~~~p~lllLDE 169 (506)
T PRK13549 93 LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-DINPATPVGNL--GLGQQQLVEIAKALNKQARLLILDE 169 (506)
T ss_pred cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC-CCCcccchhhC--CHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11111 01000 0000000000000000000112222222 12234455555 9999999999999998888777777
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|+ .++|.+....+.+.|++++. .|.+++++||.
T Consensus 170 Pt------------------------------------------~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~ 202 (506)
T PRK13549 170 PT------------------------------------------ASLTESETAVLLDIIRDLKA-HGIACIYISHK 202 (506)
T ss_pred CC------------------------------------------CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCc
Confidence 63 46677788888899999864 58899999853
No 215
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.79 E-value=3.9e-19 Score=193.73 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=113.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|+|+++|++|.++ +++.++.+.+... +.++++..++......
T Consensus 492 ~~vL~~isl~i~~G---e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPG---QRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL-FDGIPREEIPREVLANSVAMVDQDIFLFEG 567 (710)
T ss_pred CCcccceeEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEeHHHCCHHHHHhheeEEecCChhhhc
Confidence 56999999999999 99999999999999999999999999999977 7777776544332 4455555443322223
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
++.++.. ......+..+..++.....+.++..+. .+...+.+.-. +||||||||++||||+.+++..+++||+++
T Consensus 568 Ti~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~--~LSGGQrQRiaLARall~~p~iliLDEptS- 644 (710)
T TIGR03796 568 TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA--NLSGGQRQRLEIARALVRNPSILILDEATS- 644 (710)
T ss_pred cHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC--CCCHHHHHHHHHHHHHhhCCCEEEEECccc-
Confidence 3322221 111122222222222222222222220 00111111111 359999999999999998888888888754
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
++|.+..+.|++.|++ .+.+++.+||+.
T Consensus 645 -----------------------------------------~LD~~te~~i~~~l~~----~~~T~IiitHrl 672 (710)
T TIGR03796 645 -----------------------------------------ALDPETEKIIDDNLRR----RGCTCIIVAHRL 672 (710)
T ss_pred -----------------------------------------cCCHHHHHHHHHHHHh----cCCEEEEEecCH
Confidence 4455555666666664 488999999763
No 216
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=8.2e-19 Score=161.17 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=101.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC--CCCCcEEEEeceeecCCCCccccceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID--SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~--~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~ 80 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+. .|+.|++. +.+.++. .....++++ +.+.+.
T Consensus 20 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~-~~g~~~~---~~~~~~i~~--~~q~~~- 89 (192)
T cd03232 20 RQLLNNISGYVKPG---TLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL-INGRPLD---KNFQRSTGY--VEQQDV- 89 (192)
T ss_pred eEeEEccEEEEeCC---cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE-ECCEehH---HHhhhceEE--ecccCc-
Confidence 46899999999999 999999999999999999999975 47899865 5444432 111222332 222111
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFY 160 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~ 160 (415)
.+....+...+ ... ..+ .. ||+||+||++||||+..++..+++|||
T Consensus 90 -----------~~~~~tv~~~l------------~~~-~~~----~~--LSgGe~qrv~la~al~~~p~vlllDEP---- 135 (192)
T cd03232 90 -----------HSPNLTVREAL------------RFS-ALL----RG--LSVEQRKRLTIGVELAAKPSILFLDEP---- 135 (192)
T ss_pred -----------cccCCcHHHHH------------HHH-HHH----hc--CCHHHhHHHHHHHHHhcCCcEEEEeCC----
Confidence 12222222111 110 001 14 499999999999999977777777765
Q ss_pred cccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 161 LFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 161 ~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
..++|.+..+.+.+.+++++. .|.+++++||..
T Consensus 136 --------------------------------------~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~ 168 (192)
T cd03232 136 --------------------------------------TSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQP 168 (192)
T ss_pred --------------------------------------CcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCC
Confidence 356777888899999999875 589999999653
No 217
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=5.4e-19 Score=188.82 Aligned_cols=179 Identities=15% Similarity=0.045 Sum_probs=113.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.++ +++.++.+.+... +.++++..++......
T Consensus 354 ~~il~~i~l~i~~G---e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~-idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~ 429 (592)
T PRK10790 354 NLVLQNINLSVPSR---GFVALVGHTGSGKSTLASLLMGYYPLTEGEIR-LDGRPLSSLSHSVLRQGVAMVQQDPVVLAD 429 (592)
T ss_pred CceeeceeEEEcCC---CEEEEECCCCCCHHHHHHHHhcccCCCCceEE-ECCEEhhhCCHHHHHhheEEEccCCccccc
Confidence 46999999999999 99999999999999999999999999999977 7777776544332 3445554333222222
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.+..+........+..+...++....+++++.+.. -++..+.. ..||||||||++||||+..++..+++|||++
T Consensus 430 Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~---Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts- 505 (592)
T PRK10790 430 TFLANVTLGRDISEEQVWQALETVQLAELARSLPD---GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATA- 505 (592)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccc---cccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcc-
Confidence 23222211112222222222222222222222200 01111111 1259999999999999998777777777644
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
.+|.+..+.|++.|++++ .+.+++.+||..
T Consensus 506 -----------------------------------------~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~ 535 (592)
T PRK10790 506 -----------------------------------------NIDSGTEQAIQQALAAVR--EHTTLVVIAHRL 535 (592)
T ss_pred -----------------------------------------cCCHHHHHHHHHHHHHHh--CCCEEEEEecch
Confidence 555666677888888875 368999999663
No 218
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=8.2e-19 Score=162.18 Aligned_cols=170 Identities=18% Similarity=0.194 Sum_probs=117.3
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccch
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~ 81 (415)
++.+++|+||++++| ++++++|+|||||||++|+|.|+..|++|.+. +.+.. .......++||. |.-+
T Consensus 14 ~k~av~~isf~v~~G---~i~GllG~NGAGKTTtfRmILglle~~~G~I~-~~g~~---~~~~~~~rIGyL-----PEER 81 (300)
T COG4152 14 DKKAVDNISFEVPPG---EIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT-WNGGP---LSQEIKNRIGYL-----PEER 81 (300)
T ss_pred ceeeecceeeeecCC---eEEEeecCCCCCccchHHHHhccCCccCceEE-EcCcc---hhhhhhhhcccC-----hhhh
Confidence 457899999999999 99999999999999999999999999999965 44433 333445566654 1111
Q ss_pred hhhhhccCCCCCCchhhHHHHh----cC--CchhHHHHHHhHHHHH------HHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVS----MT--TPWNIIDELHNWASVL------QDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d----~~--~p~~~l~~l~~w~~~l------~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
. .|+.+.+...+- +. ....+-..++.|.+.+ .+.++.| |.|++|++.+..++..+|.
T Consensus 82 G---------Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~L--SKGnqQKIQfisaviHePe 150 (300)
T COG4152 82 G---------LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKEL--SKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred c---------cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHh--hhhhhHHHHHHHHHhcCCC
Confidence 2 244444332211 11 1123344555665443 3566777 9999999998888887777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||. .|+|+-..+.+-+.++.+.. .|++++|.|
T Consensus 151 LlILDEPF------------------------------------------SGLDPVN~elLk~~I~~lk~-~GatIifSs 187 (300)
T COG4152 151 LLILDEPF------------------------------------------SGLDPVNVELLKDAIFELKE-EGATIIFSS 187 (300)
T ss_pred EEEecCCc------------------------------------------cCCChhhHHHHHHHHHHHHh-cCCEEEEec
Confidence 77777653 46666666777777788754 599999999
Q ss_pred cCCcccHHH
Q psy13975 230 AKEDKNCDL 238 (415)
Q Consensus 230 ~k~~~n~~~ 238 (415)
|.. .++++
T Consensus 188 H~M-e~vEe 195 (300)
T COG4152 188 HRM-EHVEE 195 (300)
T ss_pred chH-HHHHH
Confidence 876 34433
No 219
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.79 E-value=1e-18 Score=184.33 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=115.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----cceEEEEEecCc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----HTRLGVWILDGE- 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~~~l~i~~l~g~- 77 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+ ++|.+. +.+.++....... +.++++..+...
T Consensus 299 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~-~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 373 (529)
T PRK15134 299 NVVVKNISFTLRPG---ETLGLVGESGSGKSTTGLALLRLIN-SQGEIW-FDGQPLHNLNRRQLLPVRHRIQVVFQDPNS 373 (529)
T ss_pred ceeeecceeEEcCC---CEEEEECCCCCCHHHHHHHHhCcCC-CCcEEE-ECCEEccccchhhHHHhhhceEEEEeCchh
Confidence 46899999999999 9999999999999999999999984 889976 5555553321111 234555544321
Q ss_pred ccchhhhhhccCCCCCCchhhH-HHHh---cC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 78 PAHSNLLRFALNQETLPHTMVM-LVVS---MT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~-~~~d---~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
..+..+ ...+.... .... +. ....+++.++......++.+..| |+|||||++||||+..+
T Consensus 374 ~l~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgG~~qrv~la~al~~~ 443 (529)
T PRK15134 374 SLNPRL--------NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEF--SGGQRQRIAIARALILK 443 (529)
T ss_pred hcCCcc--------cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccC--CHHHHHHHHHHHHHhCC
Confidence 011111 01110000 0000 00 01122333333112334455555 99999999999999977
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
+..+++||| +.++|......+.+.|++++.++|.++++
T Consensus 444 p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 481 (529)
T PRK15134 444 PSLIILDEP------------------------------------------TSSLDKTVQAQILALLKSLQQKHQLAYLF 481 (529)
T ss_pred CCEEEeeCC------------------------------------------ccccCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 777777765 45777788999999999999888999999
Q ss_pred eccCCcccHHHHHHH
Q psy13975 228 TSAKEDKNCDLLYKY 242 (415)
Q Consensus 228 tS~k~~~n~~~l~~~ 242 (415)
+| ++++.+..+
T Consensus 482 vs----Hd~~~~~~~ 492 (529)
T PRK15134 482 IS----HDLHVVRAL 492 (529)
T ss_pred Ee----CCHHHHHHh
Confidence 99 455544443
No 220
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.7e-19 Score=167.46 Aligned_cols=170 Identities=11% Similarity=0.082 Sum_probs=107.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC---CCCcEEEEeceeecCCCCccccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS---PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~---p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~ 79 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.. |+.|++. +.+.++...... ..+..+.++.+++.
T Consensus 15 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~-~~g~~i~~~~~~-~~~~~i~~~~q~~~ 89 (246)
T PRK14269 15 KQALFDINMQIEQN---KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE-IEGKDVKNQDVV-ALRKNVGMVFQQPN 89 (246)
T ss_pred EeeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEE-ECCEecccCCHH-HHhhhEEEEecCCc
Confidence 36899999999999 9999999999999999999999874 6899976 666565432211 12223333333321
Q ss_pred chhhhhhccCCCCCCchhhHHH-H-hc-C-------CchhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHhhc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLV-V-SM-T-------TPWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~-~-d~-~-------~p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl~~ 146 (415)
.-.. +..+...+.. . .+ . +...+++.++.. ...+++....| |+||+||++||||+..
T Consensus 90 l~~~--------tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~G~~qrv~laral~~ 159 (246)
T PRK14269 90 VFVK--------SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALAL--SGGQQQRLCIARALAI 159 (246)
T ss_pred cccc--------cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccC--CHHHHHHHHHHHHHhc
Confidence 1000 0101000000 0 00 0 011223332221 01123334444 9999999999999998
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
++..+++||| +.++|.+..+.+.+.|++++ .|.+++
T Consensus 160 ~p~lllLDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~--~~~tii 195 (246)
T PRK14269 160 KPKLLLLDEP------------------------------------------TSALDPISSGVIEELLKELS--HNLSMI 195 (246)
T ss_pred CCCEEEEcCC------------------------------------------cccCCHHHHHHHHHHHHHHh--CCCEEE
Confidence 8877777775 34667777888899999885 388999
Q ss_pred EeccC
Q psy13975 227 YTSAK 231 (415)
Q Consensus 227 ~tS~k 231 (415)
++||.
T Consensus 196 i~tH~ 200 (246)
T PRK14269 196 MVTHN 200 (246)
T ss_pred EEecC
Confidence 99954
No 221
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=4.3e-19 Score=186.20 Aligned_cols=180 Identities=13% Similarity=0.017 Sum_probs=110.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEEEeceeecCCCCccccceEEEEEecCcc---
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-PEKGLALEYAYINVSDEYREDHTRLGVWILDGEP--- 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~--- 78 (415)
+.+|+|+||+|++| ++++|+|+||||||||+++|+|+.+ |++|.+. +.+.++.........+.++.++.+.+
T Consensus 275 ~~vl~~vsl~i~~G---e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 350 (506)
T PRK13549 275 IKRVDDVSFSLRRG---EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF-IDGKPVKIRNPQQAIAQGIAMVPEDRKRD 350 (506)
T ss_pred cccccceeeEEcCC---cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEE-ECCEECCCCCHHHHHHCCCEEeCcchhhC
Confidence 36899999999999 9999999999999999999999998 5899976 55555432211111122233333322
Q ss_pred -cchhh--hhhccCCC--CCCchhhH-HHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 79 -AHSNL--LRFALNQE--TLPHTMVM-LVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 79 -~~~~L--l~~~l~~~--~~~~~~v~-~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
.+..+ ..+..... .+...... ..........+++.++......++.+..| |+|||||++||||+..++..++
T Consensus 351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgG~kqrv~lA~al~~~p~lll 428 (506)
T PRK13549 351 GIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARL--SGGNQQKAVLAKCLLLNPKILI 428 (506)
T ss_pred CCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccC--CHHHHHHHHHHHHHhhCCCEEE
Confidence 11111 11110000 00000000 00000001122333322101234555566 9999999999999997777777
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||| +.++|....+.+.+.|+.++. .|.+++++||.
T Consensus 429 LDEP------------------------------------------t~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd 464 (506)
T PRK13549 429 LDEP------------------------------------------TRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSE 464 (506)
T ss_pred EcCC------------------------------------------CCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCC
Confidence 7775 356777888899999999985 59999999943
No 222
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=9.5e-19 Score=163.90 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=106.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+..|+.|.+. +.+.++....... .+..+.++.+.+.+-.
T Consensus 17 ~~~l~~i~~~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~-~~~~i~~~~q~~~l~~ 91 (221)
T cd03244 17 PPVLKNISFSIKPG---EKVGIVGRTGSGKSSLLLALFRLVELSSGSIL-IDGVDISKIGLHD-LRSRISIIPQDPVLFS 91 (221)
T ss_pred cccccceEEEECCC---CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE-ECCEEhHhCCHHH-HhhhEEEECCCCcccc
Confidence 36999999999999 99999999999999999999999999999976 5554443221111 1223333443322100
Q ss_pred hhhhccCCCCCCchhhHHHHhc---CCchh---HHHHHHhHHHHHH-----------HHHhhhcCChhhHHHHHHHHHhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM---TTPWN---IIDELHNWASVLQ-----------DHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~---~~p~~---~l~~l~~w~~~l~-----------~~~~~L~lSgGekQRl~LArAl~ 145 (415)
. .+...+++ ...+. .++.+..+ +.+. +....| |+||+||++||||+.
T Consensus 92 ~-------------tv~enl~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~~l~~~~~~~~~~L--S~G~~qr~~laral~ 155 (221)
T cd03244 92 G-------------TIRSNLDPFGEYSDEELWQALERVGLK-EFVESLPGGLDTVVEEGGENL--SVGQRQLLCLARALL 155 (221)
T ss_pred c-------------hHHHHhCcCCCCCHHHHHHHHHHhCcH-HHHHhcccccccccccCCCcC--CHHHHHHHHHHHHHh
Confidence 0 11111111 01111 12222221 2222 233444 999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++||| +.++|....+.+.+.|+++. .+.++
T Consensus 156 ~~p~llllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~--~~~ti 191 (221)
T cd03244 156 RKSKILVLDEA------------------------------------------TASVDPETDALIQKTIREAF--KDCTV 191 (221)
T ss_pred cCCCEEEEeCc------------------------------------------cccCCHHHHHHHHHHHHHhc--CCCEE
Confidence 87777777775 34667777888889999874 36889
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++|+.
T Consensus 192 i~~sh~ 197 (221)
T cd03244 192 LTIAHR 197 (221)
T ss_pred EEEeCC
Confidence 999954
No 223
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.79 E-value=2.5e-18 Score=164.09 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=105.9
Q ss_pred CCeeeEeEEEc-----CCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc
Q psy13975 4 PYYDVFVLRFN-----DGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP 78 (415)
Q Consensus 4 ~iL~~vs~~i~-----~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~ 78 (415)
..|.+++|++. +| ++++|+|+||||||||+++|+|+.+|++|.+. +.+. ++++. .+..
T Consensus 8 ~~~~~~~l~~~~~~i~~G---e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~-~~g~-----------~i~~~--~q~~ 70 (246)
T cd03237 8 KTLGEFTLEVEGGSISES---EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE-IELD-----------TVSYK--PQYI 70 (246)
T ss_pred cccCcEEEEEecCCcCCC---CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE-ECCc-----------eEEEe--cccc
Confidence 46788888887 68 99999999999999999999999999999864 3221 23332 2221
Q ss_pred cchhhhhhccCCCCCCchhhHHHHhcCC-c---hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 79 AHSNLLRFALNQETLPHTMVMLVVSMTT-P---WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 79 ~~~~Ll~~~l~~~~~~~~~v~~~~d~~~-p---~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
... ......+........... . ..+++.++. ...+++.+..| |+||+||++||||+..++..+++|
T Consensus 71 ~~~-------~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l-~~~~~~~~~~L--SgGe~qrv~iaraL~~~p~llllD 140 (246)
T cd03237 71 KAD-------YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI-EQILDREVPEL--SGGELQRVAIAACLSKDADIYLLD 140 (246)
T ss_pred cCC-------CCCCHHHHHHHHhhhccccHHHHHHHHHHcCC-HHHhhCChhhC--CHHHHHHHHHHHHHhcCCCEEEEe
Confidence 100 000001100000000000 0 123444443 24455666666 999999999999999777777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|.+....+.+.|++++.+.|.+++++||.
T Consensus 141 EP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 141 EP------------------------------------------SAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred CC------------------------------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 65 346777888999999999998889999999944
No 224
>KOG0078|consensus
Probab=99.79 E-value=4.3e-19 Score=160.74 Aligned_cols=159 Identities=20% Similarity=0.349 Sum_probs=129.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-CCCC--CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-IDSP--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l~~p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++++|++|+|||+++.+++. -... .+..+++|....+. ......++.+|++.|++.|..+ +..+++.+
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~--l~g~~i~lQiWDtaGQerf~ti-----~~sYyrgA 85 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIE--LDGKKIKLQIWDTAGQERFRTI-----TTAYYRGA 85 (207)
T ss_pred EEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEE--eCCeEEEEEEEEcccchhHHHH-----HHHHHhhc
Confidence 5899999999999999999984 3322 33445555443332 2335678999999999999988 67778887
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|+++.++ ++.+..|.+.++++...
T Consensus 86 ~gi~LvyDitne~S-feni~~W~~~I~e~a~~------------------------------------------------ 116 (207)
T KOG0078|consen 86 MGILLVYDITNEKS-FENIRNWIKNIDEHASD------------------------------------------------ 116 (207)
T ss_pred CeeEEEEEccchHH-HHHHHHHHHHHHhhCCC------------------------------------------------
Confidence 7 578999999888 67777799888888731
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++++++||||+|+.+ .+.+..|+ ..++|.+||+.+++||||++.||++.|..|+..++.
T Consensus 117 ----~v~~~LvGNK~D~~~----~R~V~~e~-------ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 117 ----DVVKILVGNKCDLEE----KRQVSKER-------GEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ----CCcEEEeeccccccc----cccccHHH-------HHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 899999999999964 46666666 899999999999999999999999999999999985
No 225
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=9.5e-19 Score=167.40 Aligned_cols=170 Identities=13% Similarity=0.088 Sum_probs=105.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.. |++|.+. +.+.++...... ...+..+.++.+
T Consensus 19 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q 94 (253)
T PRK14242 19 FQALHDISLEFEQN---QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL-LDGENIYDPHVDVVELRRRVGMVFQ 94 (253)
T ss_pred eeeecceeEEEeCC---CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE-ECCEEccccccCHHHHhhcEEEEec
Confidence 46899999999999 9999999999999999999999864 5789866 555554321111 111223333333
Q ss_pred cccchhhhhhccCCCCCCchhhHHHHhcC---C-------chhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLVVSMT---T-------PWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~---~-------p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
...+ .+..+.+... ...... . ...+++.++.+ ...+++.+..| |+||+||++||||
T Consensus 95 ~~~~--------~~~tv~enl~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--SgGq~qrv~lara 163 (253)
T PRK14242 95 KPNP--------FPKSIFENVA-YGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGL--SGGQQQRLCIARA 163 (253)
T ss_pred CCCC--------CcCcHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccC--CHHHHHHHHHHHH
Confidence 2211 0001111100 000000 0 00112222221 11223334445 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++||| +.++|.+..+.+.+.|++++ + |.
T Consensus 164 l~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~-~-~~ 199 (253)
T PRK14242 164 LAVEPEVLLMDEP------------------------------------------ASALDPIATQKIEELIHELK-A-RY 199 (253)
T ss_pred HhcCCCEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHh-c-CC
Confidence 9977777777765 35677788889999999985 3 78
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 200 tvii~tH~ 207 (253)
T PRK14242 200 TIIIVTHN 207 (253)
T ss_pred eEEEEEec
Confidence 99999954
No 226
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=1.8e-19 Score=168.87 Aligned_cols=165 Identities=14% Similarity=0.094 Sum_probs=112.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccc--------eEE-EEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHT--------RLG-VWI 73 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~--------~l~-i~~ 73 (415)
.++++|+||+|++| ++++++|+|||||||+|++|+|+..|++|.+. ..+++-.+....... +.+ .|+
T Consensus 37 ~~AVqdisf~IP~G---~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~-V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 37 IEAVQDISFEIPKG---EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR-VNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhheeeeecCCC---cEEEEEcCCCCcchhhHHHHhCccccCCCeEE-ecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 35789999999999 99999999999999999999999999999976 333332221111111 222 243
Q ss_pred ecCcccchhhhhhccCCCCCCchhh-HHHHhcCCc------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc
Q psy13975 74 LDGEPAHSNLLRFALNQETLPHTMV-MLVVSMTTP------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 74 l~g~~~~~~Ll~~~l~~~~~~~~~v-~~~~d~~~p------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~ 146 (415)
++-. ....+ -..+++... ..+.+.++. ...++..+..| |.|||.|++||.+|..
T Consensus 113 lp~~----------------ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl-~~~lk~~vr~L--SlGqRmraeLaaaLLh 173 (325)
T COG4586 113 LPAL----------------DSLEVLKLIYEIPDDEFAERLDFLTEILDL-EGFLKWPVRKL--SLGQRMRAELAAALLH 173 (325)
T ss_pred chhh----------------hhHHHHHHHHhCCHHHHHHHHHHHHHHhcc-hhhhhhhhhhc--cchHHHHHHHHHHhcC
Confidence 3311 11111 122333221 112233333 34566777777 9999999999999997
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
++..+.+||| +-|+|--..+.|..+++.+|.+++++++
T Consensus 174 ~p~VLfLDEp------------------------------------------TvgLDV~aq~~ir~Flke~n~~~~aTVl 211 (325)
T COG4586 174 PPKVLFLDEP------------------------------------------TVGLDVNAQANIREFLKEYNEERQATVL 211 (325)
T ss_pred CCcEEEecCC------------------------------------------ccCcchhHHHHHHHHHHHHHHhhCceEE
Confidence 7766666665 3355555677888899999999999999
Q ss_pred EeccCC
Q psy13975 227 YTSAKE 232 (415)
Q Consensus 227 ~tS~k~ 232 (415)
||||.-
T Consensus 212 lTTH~~ 217 (325)
T COG4586 212 LTTHIF 217 (325)
T ss_pred EEecch
Confidence 999654
No 227
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.79 E-value=1e-18 Score=184.20 Aligned_cols=180 Identities=11% Similarity=0.096 Sum_probs=114.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.++ +++.++.+...+. +.++++..++....-.
T Consensus 335 ~~il~~i~l~i~~G---~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~-~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ 410 (529)
T TIGR02857 335 APALRPVSFTVPPG---ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA-VNGVPLADADADSWRDQIAWVPQHPFLFAG 410 (529)
T ss_pred cccccceeEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEehhhCCHHHHHhheEEEcCCCcccCc
Confidence 36999999999999 99999999999999999999999999999977 6777766544332 3344554332211222
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHh-HHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHN-WASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~-w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
++.++.. ......+..+...+.....+.+++.+.. +...+.+.-.. ||||||||++||||+.+++..+++||+++
T Consensus 411 ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~--LSgGq~qri~laRal~~~~~ililDE~ts- 487 (529)
T TIGR02857 411 TIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAG--LSGGQAQRLALARAFLRDAPLLLLDEPTA- 487 (529)
T ss_pred CHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhcccccc--CCHHHHHHHHHHHHHhcCCCEEEEeCccc-
Confidence 2222221 1111222222222222222233333211 01112222223 59999999999999998888888887644
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
++|.+..+.|++.++.+. .|.+++.+||..
T Consensus 488 -----------------------------------------~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~ 517 (529)
T TIGR02857 488 -----------------------------------------HLDAETEALVTEALRALA--QGRTVLLVTHRL 517 (529)
T ss_pred -----------------------------------------ccCHHHHHHHHHHHHHhc--CCCEEEEEecCH
Confidence 455566667777787763 588999999764
No 228
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.79 E-value=5.2e-19 Score=185.35 Aligned_cols=185 Identities=12% Similarity=0.033 Sum_probs=112.7
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc----c
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP----A 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~----~ 79 (415)
.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........+.++.++.+.+ .
T Consensus 266 ~~l~~vsl~i~~G---e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~-~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 341 (501)
T PRK10762 266 PGVNDVSFTLRKG---EILGVSGLMGAGRTELMKVLYGALPRTSGYVT-LDGHEVVTRSPQDGLANGIVYISEDRKRDGL 341 (501)
T ss_pred CCcccceEEEcCC---cEEEEecCCCCCHHHHHHHHhCCCCCCceEEE-ECCEECCCCCHHHHHHCCCEEecCccccCCC
Confidence 4689999999999 99999999999999999999999999999976 55555533221111122233333332 1
Q ss_pred chhh--hhhcc-CCC-CCCch-hhHH-HHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 80 HSNL--LRFAL-NQE-TLPHT-MVML-VVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 80 ~~~L--l~~~l-~~~-~~~~~-~v~~-~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
+..+ ..+.. ... .+... .... .........+++.++......++.+..| |+|||||++||||+..++..+++
T Consensus 342 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 342 VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLL--SGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred cCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhC--CHHHHHHHHHHHHHhhCCCEEEE
Confidence 1111 11000 000 00000 0000 0000000112222222001234455555 99999999999999988877777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCc
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKED 233 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~ 233 (415)
||| +.++|....+.+.+.|++++.+ |.+++++|
T Consensus 420 DEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~~-g~tviivt---- 452 (501)
T PRK10762 420 DEP------------------------------------------TRGVDVGAKKEIYQLINQFKAE-GLSIILVS---- 452 (501)
T ss_pred cCC------------------------------------------CCCCCHhHHHHHHHHHHHHHHC-CCEEEEEc----
Confidence 775 3467778889999999999764 99999999
Q ss_pred ccHHHHHH
Q psy13975 234 KNCDLLYK 241 (415)
Q Consensus 234 ~n~~~l~~ 241 (415)
++++.+.+
T Consensus 453 Hd~~~~~~ 460 (501)
T PRK10762 453 SEMPEVLG 460 (501)
T ss_pred CCHHHHHh
Confidence 45554444
No 229
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.79 E-value=2.4e-18 Score=164.34 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=104.5
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcc-cch-
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEP-AHS- 81 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~-~~~- 81 (415)
+|+++||+|.+| ++++|+|+||||||||+++|+|+.+ .+|.+. +.+.++....... ...+++. .+.. .+.
T Consensus 11 ~l~~vsl~i~~G---ei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~-~~g~~i~~~~~~~~~~~i~~v--~q~~~~~~~ 83 (248)
T PRK03695 11 RLGPLSAEVRAG---EILHLVGPNGAGKSTLLARMAGLLP-GSGSIQ-FAGQPLEAWSAAELARHRAYL--SQQQTPPFA 83 (248)
T ss_pred eecceEEEEcCC---CEEEEECCCCCCHHHHHHHHcCCCC-CCeEEE-ECCEecCcCCHHHHhhheEEe--cccCccCCC
Confidence 689999999999 9999999999999999999999985 489865 5555553322111 1223333 3222 111
Q ss_pred -hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc-------cccccc
Q psy13975 82 -NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF-------ARLRAH 152 (415)
Q Consensus 82 -~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~-------~~~~~~ 152 (415)
....+.. .......... .......+++.++. ...+++.+..| |+||+||++||||+.. ++..++
T Consensus 84 ~tv~~nl~~~~~~~~~~~~----~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~la~al~~~~~~~~p~p~lll 156 (248)
T PRK03695 84 MPVFQYLTLHQPDKTRTEA----VASALNEVAEALGL-DDKLGRSVNQL--SGGEWQRVRLAAVVLQVWPDINPAGQLLL 156 (248)
T ss_pred ccHHHHHHhcCccCCCcHH----HHHHHHHHHHHcCC-HhHhcCCcccC--CHHHHHHHHHHHHHhccccccCCCCCEEE
Confidence 1111100 0000000000 00001122333333 23344455555 9999999999999985 334555
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||| +.++|.+..+.+.+.|+.++. .|.+++++||.
T Consensus 157 lDEP------------------------------------------t~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~ 192 (248)
T PRK03695 157 LDEP------------------------------------------MNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHD 192 (248)
T ss_pred EcCC------------------------------------------cccCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 5554 457777888999999999975 48999999944
No 230
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.78 E-value=5.3e-19 Score=192.60 Aligned_cols=178 Identities=13% Similarity=0.077 Sum_probs=114.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.++ +++.++.+.+.+. +.++++..++......
T Consensus 487 ~~iL~~isl~i~~G---~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g 562 (708)
T TIGR01193 487 SNILSDISLTIKMN---SKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL-LNGFSLKDIDRHTLRQFINYLPQEPYIFSG 562 (708)
T ss_pred CcceeceeEEECCC---CEEEEECCCCCCHHHHHHHHhccCCCCCcEEE-ECCEEHHHcCHHHHHHheEEEecCceehhH
Confidence 57999999999999 99999999999999999999999999999977 7777776554433 3445555443322323
Q ss_pred hhhhhcc-C-CCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 82 NLLRFAL-N-QETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 82 ~Ll~~~l-~-~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
++..+.. . .....+..+...........++..+.. -++..+.. .+||||||||++||||+.+++..+++||++
T Consensus 563 TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~---gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~T 639 (708)
T TIGR01193 563 SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPL---GYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST 639 (708)
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhccc---ccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 3322221 1 111222122222222221122221100 01111111 235999999999999999888888888865
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+ ++|.+..+.|++.|+.+ .|.+++.+||+.
T Consensus 640 s------------------------------------------~LD~~te~~i~~~L~~~---~~~T~IiitHr~ 669 (708)
T TIGR01193 640 S------------------------------------------NLDTITEKKIVNNLLNL---QDKTIIFVAHRL 669 (708)
T ss_pred c------------------------------------------cCCHHHHHHHHHHHHHh---cCCEEEEEecch
Confidence 4 45556667788888764 478999999764
No 231
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.5e-18 Score=167.59 Aligned_cols=168 Identities=11% Similarity=0.085 Sum_probs=106.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCC--c-cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEY--R-EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~--~-~~~~~l~i~~l 74 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+ |++|.+. +.+.++.... . ....++++..
T Consensus 52 ~~il~~is~~i~~G---e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~-i~G~~i~~~~~~~~~~~~~i~~v~- 126 (285)
T PRK14254 52 EQALDDVSMDIPEN---QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT-FRGKNVYDADVDPVALRRRIGMVF- 126 (285)
T ss_pred EeeEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE-ECCEEccccccchHhhhccEEEEe-
Confidence 36899999999999 9999999999999999999999986 6889976 5555543211 1 1122344443
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHHHhc---C-----CchhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSM---T-----TPWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~---~-----~p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
+...+ .+..+.+.... .... . ..+.+++.++.+ ...+++.+..| |+||+||++||||
T Consensus 127 -q~~~l--------~~~tv~enl~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L--SgGe~qrv~LAra 194 (285)
T PRK14254 127 -QKPNP--------FPKSIYDNVAY-GLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDL--SGGQQQRLCIARA 194 (285)
T ss_pred -cCCcc--------CcCCHHHHHHH-HHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccC--CHHHHHHHHHHHH
Confidence 32211 00011110000 0000 0 011222222221 12234444555 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++|||+ .++|.+..+.+.+.|++++. +.
T Consensus 195 L~~~p~lLLLDEPt------------------------------------------s~LD~~~~~~l~~~L~~~~~--~~ 230 (285)
T PRK14254 195 IAPDPEVILMDEPA------------------------------------------SALDPVATSKIEDLIEELAE--EY 230 (285)
T ss_pred HHcCCCEEEEeCCC------------------------------------------CCCCHHHHHHHHHHHHHHhc--CC
Confidence 99888777777753 46777888899999999975 36
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 231 tiii~tH~ 238 (285)
T PRK14254 231 TVVIVTHN 238 (285)
T ss_pred EEEEEeCC
Confidence 89999943
No 232
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.78 E-value=6e-19 Score=191.79 Aligned_cols=180 Identities=15% Similarity=0.147 Sum_probs=114.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.++ +++.++.+..... +..+++..++...+..
T Consensus 478 ~~vL~~i~l~i~~G---~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~-idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPG---EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL-LDGVDIRQIDPADLRRNIGYVPQDPRLFYG 553 (694)
T ss_pred ccceeeeeEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEhhhCCHHHHHhccEEECCChhhhhh
Confidence 46999999999999 99999999999999999999999999999977 7777776544332 3344444332221222
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.+.++.. ....+.+..+..+++....+.+++.+. .+...+.+.-. .||||||||++||||+.+++..+++||+++
T Consensus 554 TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~--~LSgGQrQRlalARall~~p~iliLDE~Ts- 630 (694)
T TIGR03375 554 TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGR--SLSGGQRQAVALARALLRDPPILLLDEPTS- 630 (694)
T ss_pred hHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCC--CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-
Confidence 2222221 111122222222222222222222220 00111111111 359999999999999998888888887644
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
++|.+..+.|++.|+++. .+.+++++||..
T Consensus 631 -----------------------------------------~LD~~te~~i~~~l~~~~--~~~T~iiItHrl 660 (694)
T TIGR03375 631 -----------------------------------------AMDNRSEERFKDRLKRWL--AGKTLVLVTHRT 660 (694)
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHHh--CCCEEEEEecCH
Confidence 556666778888888775 478999999664
No 233
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.78 E-value=2.3e-18 Score=181.64 Aligned_cols=173 Identities=15% Similarity=0.127 Sum_probs=113.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCccc-----cceEEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYRED-----HTRLGVW 72 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~~-----~~~l~i~ 72 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+++| ++|.+. +.+.++....... ..++++.
T Consensus 22 ~~~l~~isl~i~~G---e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~~~ig~v 97 (529)
T PRK15134 22 RTVVNDVSLQIEAG---ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIR-FHGESLLHASEQTLRGVRGNKIAMI 97 (529)
T ss_pred eeeeeceEEEEeCC---CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEE-ECCEecccCCHHHHHHHhcCceEEE
Confidence 46899999999999 99999999999999999999999886 689866 5665554322111 1245555
Q ss_pred EecCcccchhhhhhccCCCCCCchhhHHHHh----cCC------chhHHHHHHhH--HHHHHHHHhhhcCChhhHHHHHH
Q psy13975 73 ILDGEPAHSNLLRFALNQETLPHTMVMLVVS----MTT------PWNIIDELHNW--ASVLQDHIDSLNIGAHDYQAGRC 140 (415)
Q Consensus 73 ~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d----~~~------p~~~l~~l~~w--~~~l~~~~~~L~lSgGekQRl~L 140 (415)
.+.....+... ..+.+. +..... +.. ...+++.++.. ...+++.+..| |+|||||++|
T Consensus 98 ~Q~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~L--SgGe~qrv~i 167 (529)
T PRK15134 98 FQEPMVSLNPL-------HTLEKQ-LYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQL--SGGERQRVMI 167 (529)
T ss_pred ecCchhhcCch-------hhHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCccc--CHHHHHHHHH
Confidence 44321101000 000000 000000 000 11223333221 01235556666 9999999999
Q ss_pred HHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH
Q psy13975 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK 220 (415)
Q Consensus 141 ArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~ 220 (415)
|||+..++..+++|||+ .++|.+....+.+.|++++.+
T Consensus 168 AraL~~~p~llllDEPt------------------------------------------~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 168 AMALLTRPELLIADEPT------------------------------------------TALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred HHHHhcCCCEEEEcCCC------------------------------------------CccCHHHHHHHHHHHHHHHHh
Confidence 99999888777777753 467778899999999999887
Q ss_pred hCCeEEEeccC
Q psy13975 221 FGAGLFYTSAK 231 (415)
Q Consensus 221 ~Gasli~tS~k 231 (415)
+|.+++++||.
T Consensus 206 ~g~tvi~vtHd 216 (529)
T PRK15134 206 LNMGLLFITHN 216 (529)
T ss_pred cCCeEEEEcCc
Confidence 89999999954
No 234
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.4e-18 Score=156.65 Aligned_cols=138 Identities=19% Similarity=0.233 Sum_probs=98.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~~ 82 (415)
.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++....... ..++++. .+++.
T Consensus 16 ~~l~~i~~~i~~G---~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~--~~~~~--- 86 (171)
T cd03228 16 PVLKDVSLTIKPG---EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-IDGVDLRDLDLESLRKNIAYV--PQDPF--- 86 (171)
T ss_pred ccccceEEEEcCC---CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE-ECCEEhhhcCHHHHHhhEEEE--cCCch---
Confidence 6899999999999 99999999999999999999999999999965 5554443211111 1222322 21110
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLF 162 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~ 162 (415)
+ + .. ++.+.+ | |+||+||++||||+..++..+++|||
T Consensus 87 ~---------~-~~------------t~~e~l-------------L--S~G~~~rl~la~al~~~p~llllDEP------ 123 (171)
T cd03228 87 L---------F-SG------------TIRENI-------------L--SGGQRQRIAIARALLRDPPILILDEA------ 123 (171)
T ss_pred h---------c-cc------------hHHHHh-------------h--CHHHHHHHHHHHHHhcCCCEEEEECC------
Confidence 0 0 00 111111 4 99999999999999977777777765
Q ss_pred cCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 163 YSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 163 ~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.|++++ + +++++++||.
T Consensus 124 ------------------------------------~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~ 154 (171)
T cd03228 124 ------------------------------------TSALDPETEALILEALRALA-K-GKTVIVIAHR 154 (171)
T ss_pred ------------------------------------CcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecC
Confidence 35677778888999999885 3 7899999955
No 235
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.78 E-value=9.2e-19 Score=185.26 Aligned_cols=180 Identities=16% Similarity=0.108 Sum_probs=113.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc--c
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA--H 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~--~ 80 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|+|+++|++|.++ +++.++....... .+-.+.++.+++. .
T Consensus 331 ~~~l~~~~~~i~~G---~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~-~~g~~i~~~~~~~-~~~~i~~v~q~~~lf~ 405 (544)
T TIGR01842 331 KPTLRGISFRLQAG---EALAIIGPSGSGKSTLARLIVGIWPPTSGSVR-LDGADLKQWDRET-FGKHIGYLPQDVELFP 405 (544)
T ss_pred ccccccceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEehhhCCHHH-HhhheEEecCCccccc
Confidence 46899999999999 99999999999999999999999999999976 6666665433322 2223333444332 1
Q ss_pred hhhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHh-HHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 81 SNLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHN-WASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 81 ~~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~-w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
..+..+.. ......+..+...++....+++++.+.. +...+.+... .||+|||||++||||+..++..+++|||+
T Consensus 406 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~--~LSgGq~qrl~lARall~~~~ililDEpt- 482 (544)
T TIGR01842 406 GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGA--TLSGGQRQRIALARALYGDPKLVVLDEPN- 482 (544)
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcC--CCCHHHHHHHHHHHHHhcCCCEEEEeCCc-
Confidence 22221111 1111112112222222222222222210 0111112222 25999999999999999888888888764
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
.++|.+..+.+.+.|+.++ ..|.+++++||..
T Consensus 483 -----------------------------------------s~LD~~~~~~i~~~l~~~~-~~~~tvi~ith~~ 514 (544)
T TIGR01842 483 -----------------------------------------SNLDEEGEQALANAIKALK-ARGITVVVITHRP 514 (544)
T ss_pred -----------------------------------------cccCHHHHHHHHHHHHHHh-hCCCEEEEEeCCH
Confidence 3566677778888888875 3588999999764
No 236
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.78 E-value=1.1e-18 Score=182.79 Aligned_cols=177 Identities=18% Similarity=0.109 Sum_probs=108.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEeceeecCCCCccc--cceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP--EKGLALEYAYINVSDEYRED--HTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p--~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~ 78 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++....... ..++++..+...
T Consensus 14 ~~il~~isl~i~~G---e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~- 88 (500)
T TIGR02633 14 VKALDGIDLEVRPG---ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIY-WSGSPLKASNIRDTERAGIVIIHQELT- 88 (500)
T ss_pred eEeecceEEEEeCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE-ECCEECCCCCHHHHHhCCEEEEeeccc-
Confidence 46899999999999 99999999999999999999999886 789976 5555554322111 223555433221
Q ss_pred cchhh--hhhcc-CCCCCCchhhHHHHh-cCCchhHHHHHHhHHHHH-HHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 79 AHSNL--LRFAL-NQETLPHTMVMLVVS-MTTPWNIIDELHNWASVL-QDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 79 ~~~~L--l~~~l-~~~~~~~~~v~~~~d-~~~p~~~l~~l~~w~~~l-~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+..+ ..... .............-. ......+++.++.. ... ++.+..| |+|||||++||||+..++..+++
T Consensus 89 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~L--SgG~~qrv~iA~al~~~p~lllL 165 (500)
T TIGR02633 89 LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD-ADNVTRPVGDY--GGGQQQLVEIAKALNKQARLLIL 165 (500)
T ss_pred cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCC-CCcccCchhhC--CHHHHHHHHHHHHHhhCCCEEEE
Confidence 11111 00000 000000000000000 00001122222221 111 2335555 99999999999999977777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
||| +.++|.+..+.+.+.|++++ ++|.+++++||
T Consensus 166 DEP------------------------------------------t~~LD~~~~~~l~~~l~~l~-~~g~tviiitH 199 (500)
T TIGR02633 166 DEP------------------------------------------SSSLTEKETEILLDIIRDLK-AHGVACVYISH 199 (500)
T ss_pred eCC------------------------------------------CCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeC
Confidence 765 35777888999999999997 46999999995
No 237
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=166.12 Aligned_cols=171 Identities=11% Similarity=0.057 Sum_probs=106.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++...... ...+.++.++.+
T Consensus 20 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q 95 (254)
T PRK14273 20 FKALNNINIKILKN---SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI-YEGKNIYSNNFDILELRRKIGMVFQ 95 (254)
T ss_pred ceeecceeeEEcCC---CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE-ECCEecccccccHHHHhhceEEEee
Confidence 46899999999999 99999999999999999999999886 478866 555554321111 111223333333
Q ss_pred cccchhhhhhccCCCCCCchhhHHH--HhcCCc-------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLV--VSMTTP-------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~--~d~~~p-------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
++..-.+ .+.+...+.. ...... ..+++.++.+ ...+++.+..| |+||+||++||||+
T Consensus 96 ~~~~~~~--------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L--SgG~~qrv~laral 165 (254)
T PRK14273 96 TPNPFLM--------SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSL--SGGQQQRLCIARTL 165 (254)
T ss_pred ccccccC--------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccC--CHHHHHHHHHHHHH
Confidence 2211001 0111000000 000000 0112222221 01223334444 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|......+++.|++++ .+.+
T Consensus 166 ~~~p~lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~--~~~t 201 (254)
T PRK14273 166 AIEPNVILMDEP------------------------------------------TSALDPISTGKIEELIINLK--ESYT 201 (254)
T ss_pred HcCCCEEEEeCC------------------------------------------CcccCHHHHHHHHHHHHHHh--cCCE
Confidence 988877777775 34677788889999999985 3789
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 202 vii~sH~ 208 (254)
T PRK14273 202 IIIVTHN 208 (254)
T ss_pred EEEEeCC
Confidence 9999954
No 238
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=2.6e-18 Score=158.14 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=105.5
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
.+.++||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++... ....+++. .+...+
T Consensus 15 ~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~i~~~---~~~~~~~~--~~~~~~---- 81 (195)
T PRK13541 15 NLFDLSITFLPS---AITYIKGANGCGKSSLLRMIAGIMQPSSGNIY-YKNCNINNI---AKPYCTYI--GHNLGL---- 81 (195)
T ss_pred EEEEEEEEEcCC---cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCcccChh---hhhhEEec--cCCcCC----
Confidence 344599999999 99999999999999999999999999999966 554444221 11222222 211110
Q ss_pred hhccCCCCCCchhhHHHHh-----cC---CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 85 RFALNQETLPHTMVMLVVS-----MT---TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d-----~~---~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
+....+...+. .. ..+.+++.+.. ...+++....| |+||+||++||||+..++..+++|||
T Consensus 82 --------~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 82 --------KLEMTVFENLKFWSEIYNSAETLYAAIHYFKL-HDLLDEKCYSL--SSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred --------CccCCHHHHHHHHHHhcccHHHHHHHHHHcCC-HhhhccChhhC--CHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11111111110 00 11122333333 23445566666 99999999999999987877777775
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+ .++|.+..+.+.+.++... +.|.+++++||..
T Consensus 151 ~------------------------------------------~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~ 183 (195)
T PRK13541 151 E------------------------------------------TNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLE 183 (195)
T ss_pred c------------------------------------------ccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCc
Confidence 3 4666677888888888654 5689999999764
No 239
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-18 Score=168.39 Aligned_cols=178 Identities=12% Similarity=0.099 Sum_probs=106.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.. |+.|.+. +.+.++...... ...+.++.++.+
T Consensus 34 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q 109 (268)
T PRK14248 34 KRAVNDISMDIEKH---AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEIL-YEGLNILDSNINVVNLRREIGMVFQ 109 (268)
T ss_pred ceeeeceEEEEcCC---CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEE-ECCEEcccccccHHHHhccEEEEec
Confidence 46899999999999 9999999999999999999999754 6889865 555554321111 111223333333
Q ss_pred ccc-c-hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 77 EPA-H-SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 77 ~~~-~-~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
... + ..+..+......+.........+ .....+++.+..+ ...+++.+..| |+||+||++|||||..++..+
T Consensus 110 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~L--SgGq~qrl~laral~~~p~ll 186 (268)
T PRK14248 110 KPNPFPKSIYNNITHALKYAGERRKSVLD-EIVEESLTKAALWDEVKDRLHSSALSL--SGGQQQRLCIARTLAMKPAVL 186 (268)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHcCCCcchHHHHhcCcccC--CHHHHHHHHHHHHHhCCCCEE
Confidence 221 1 11110000000000000000000 0000112222211 12334445555 999999999999999877777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|++++. +.+++++||.
T Consensus 187 lLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~ 222 (268)
T PRK14248 187 LLDEP------------------------------------------ASALDPISNAKIEELITELKE--EYSIIIVTHN 222 (268)
T ss_pred EEcCC------------------------------------------CcccCHHHHHHHHHHHHHHhc--CCEEEEEEeC
Confidence 77775 346777888899999999853 6789999943
No 240
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.1e-18 Score=164.92 Aligned_cols=169 Identities=11% Similarity=0.108 Sum_probs=104.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC--C---CCcEEEEeceeecCCCCc---cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS--P---EKGLALEYAYINVSDEYR---EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~--p---~~G~il~~~~~~v~~~~~---~~~~~l~i~~l 74 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+ | ++|++. +.+.++..... ..+.++++.
T Consensus 17 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~~i~~~~~~~~~~~~~i~~~-- 90 (252)
T PRK14256 17 NHAVKDVSMDFPEN---SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL-LDDTDIYDRGVDPVSIRRRVGMV-- 90 (252)
T ss_pred eeEEecceEEEcCC---CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE-ECCEEcccccCChHHhhccEEEE--
Confidence 46899999999999 9999999999999999999999975 3 579865 66655532111 112234443
Q ss_pred cCcc-cchhhhhhccCCCCCCchhhHHHHhcC--C-------chhHHHHHHhH--H-HHHHHHHhhhcCChhhHHHHHHH
Q psy13975 75 DGEP-AHSNLLRFALNQETLPHTMVMLVVSMT--T-------PWNIIDELHNW--A-SVLQDHIDSLNIGAHDYQAGRCC 141 (415)
Q Consensus 75 ~g~~-~~~~Ll~~~l~~~~~~~~~v~~~~d~~--~-------p~~~l~~l~~w--~-~~l~~~~~~L~lSgGekQRl~LA 141 (415)
.++. .+..+ .+.+.......... . ...+++.++.. . ..++..+..| |+||+||++||
T Consensus 91 ~q~~~~~~~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~G~~qrl~la 160 (252)
T PRK14256 91 FQKPNPFPAM--------SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMEL--SGGQQQRLCIA 160 (252)
T ss_pred ecCCCCCCcC--------cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcC--CHHHHHHHHHH
Confidence 3322 11111 11110000000000 0 01122222221 0 1122334444 99999999999
Q ss_pred HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh
Q psy13975 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF 221 (415)
Q Consensus 142 rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~ 221 (415)
||+..++..+++||| ..++|.+..+.+.+.|++++.
T Consensus 161 ral~~~p~llllDEP------------------------------------------~~gLD~~~~~~l~~~l~~~~~-- 196 (252)
T PRK14256 161 RTIAVKPEVILMDEP------------------------------------------ASALDPISTLKIEELIEELKE-- 196 (252)
T ss_pred HHHhcCCCEEEEcCC------------------------------------------cccCCHHHHHHHHHHHHHHHh--
Confidence 999977777777765 346777888899999999964
Q ss_pred CCeEEEeccC
Q psy13975 222 GAGLFYTSAK 231 (415)
Q Consensus 222 Gasli~tS~k 231 (415)
+.+++++||.
T Consensus 197 ~~tiiivsH~ 206 (252)
T PRK14256 197 KYTIIIVTHN 206 (252)
T ss_pred CCcEEEEECC
Confidence 5789999943
No 241
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.78 E-value=1.2e-18 Score=183.34 Aligned_cols=171 Identities=13% Similarity=0.142 Sum_probs=109.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC--CCCCcEEEEec-----------------------eee
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID--SPEKGLALEYA-----------------------YIN 57 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~--~p~~G~il~~~-----------------------~~~ 57 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+. .|+.|.+. +. +.+
T Consensus 13 ~~~l~~is~~i~~G---e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~-~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 88 (520)
T TIGR03269 13 KEVLKNISFTIEEG---EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII-YHVALCEKCGYVERPSKVGEPCPVCGGT 88 (520)
T ss_pred eEeeeceeEEEcCC---CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEE-Eecccccccccccccccccccccccccc
Confidence 46899999999999 999999999999999999999996 69999976 32 111
Q ss_pred cC----CC---Cc----cccceEEEEEecCcccchhhhhhccCCCCCCchhhHHHHh---cC------CchhHHHHHHhH
Q psy13975 58 VS----DE---YR----EDHTRLGVWILDGEPAHSNLLRFALNQETLPHTMVMLVVS---MT------TPWNIIDELHNW 117 (415)
Q Consensus 58 v~----~~---~~----~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d---~~------~p~~~l~~l~~w 117 (415)
+. +. .. ..+.++++..+.....+..+ ...+. +...+. +. +...+++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~--------tv~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~gl- 158 (520)
T TIGR03269 89 LEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD--------TVLDN-VLEALEEIGYEGKEAVGRAVDLIEMVQL- 158 (520)
T ss_pred ccccchhhhccCHHHHHHhhhcEEEEeccccccCCCC--------CHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHcCC-
Confidence 10 00 00 00122344332211111111 00000 000010 00 01122333333
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhh
Q psy13975 118 ASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLE 197 (415)
Q Consensus 118 ~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE 197 (415)
...+++.+..| |+|||||++||||+..++..+++|||+
T Consensus 159 ~~~~~~~~~~L--SgGq~qrv~iA~al~~~p~lllLDEPt---------------------------------------- 196 (520)
T TIGR03269 159 SHRITHIARDL--SGGEKQRVVLARQLAKEPFLFLADEPT---------------------------------------- 196 (520)
T ss_pred hhhhhcCcccC--CHHHHHHHHHHHHHhcCCCEEEeeCCc----------------------------------------
Confidence 13334555555 999999999999999888777777753
Q ss_pred hcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 198 KDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 198 ~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.++|.+..+.+.+.|++++.++|.+++++||.
T Consensus 197 --~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 197 --GTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred --ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 46778889999999999988889999999964
No 242
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.78 E-value=7.6e-19 Score=183.61 Aligned_cols=172 Identities=13% Similarity=0.069 Sum_probs=111.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ...+++..+.....+
T Consensus 16 ~~il~~vsl~i~~G---e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~-~~~~~~~~~~~~~~~~~i~~~~q~~~~~~- 90 (490)
T PRK10938 16 TKTLQLPSLTLNAG---DSWAFVGANGSGKSALARALAGELPLLSGERQ-SQFSHITRLSFEQLQKLVSDEWQRNNTDM- 90 (490)
T ss_pred eeecccceEEEcCC---CEEEEECCCCCCHHHHHHHHhccCCCCCceEE-ECCcccccCCHHHHHHHhceeccCcchhh-
Confidence 45899999999999 99999999999999999999999999999965 4333332111111 122333322211000
Q ss_pred hhhhhccCC-CCCCchhhHHHHhc-----CCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 82 NLLRFALNQ-ETLPHTMVMLVVSM-----TTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 82 ~Ll~~~l~~-~~~~~~~v~~~~d~-----~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
+ .. .......+...+.. .+...+++.++.+ ..+++.+..| |+|||||++||||+..++..+++||
T Consensus 91 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 91 -L-----SPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGIT-ALLDRRFKYL--STGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred -c-----ccchhhccccHHHhcccchhHHHHHHHHHHHcCCH-hhhhCCcccC--CHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 0 00 00001111111111 0112334444442 4455666666 9999999999999998887777777
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|+ .++|.+....+.+.|++++. .|.+++++||.
T Consensus 162 Pt------------------------------------------~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~ 194 (490)
T PRK10938 162 PF------------------------------------------DGLDVASRQQLAELLASLHQ-SGITLVLVLNR 194 (490)
T ss_pred Cc------------------------------------------ccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence 53 46777889999999999875 48999999953
No 243
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.78 E-value=1.9e-18 Score=181.87 Aligned_cols=178 Identities=13% Similarity=0.069 Sum_probs=114.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEec-ee---ecCCCCc----cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYA-YI---NVSDEYR----EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~-~~---~v~~~~~----~~~~~l~i~~l 74 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +. +. ++..... ..+.++++..+
T Consensus 297 ~~il~~is~~i~~G---e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~-~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q 372 (520)
T TIGR03269 297 VKAVDNVSLEVKEG---EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVN-VRVGDEWVDMTKPGPDGRGRAKRYIGILHQ 372 (520)
T ss_pred ceEEeeEEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-EecCCccccccccchhhHHHHhhhEEEEcc
Confidence 35899999999999 99999999999999999999999999999976 32 21 1111110 11223454433
Q ss_pred cCcccchhhhhhccCCCCCCchhhH-HHHhcC------CchhHHHHHHhHH----HHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVM-LVVSMT------TPWNIIDELHNWA----SVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~-~~~d~~------~p~~~l~~l~~w~----~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
... .+..+ ...+.... ..+.+. ....+++.++... +.+++.+..| |+|||||++||||
T Consensus 373 ~~~-l~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L--SgGq~qrv~lara 441 (520)
T TIGR03269 373 EYD-LYPHR--------TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDEL--SEGERHRVALAQV 441 (520)
T ss_pred Ccc-cCCCC--------cHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhC--CHHHHHHHHHHHH
Confidence 211 11111 01000000 000000 0112333333321 1345666666 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++||| +.++|....+.+.+.|++++.++|.
T Consensus 442 l~~~p~lLllDEP------------------------------------------t~~LD~~~~~~l~~~l~~l~~~~g~ 479 (520)
T TIGR03269 442 LIKEPRIVILDEP------------------------------------------TGTMDPITKVDVTHSILKAREEMEQ 479 (520)
T ss_pred HhcCCCEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHHHcCc
Confidence 9987777777775 3577778899999999999888899
Q ss_pred eEEEeccCCcccHHHHHH
Q psy13975 224 GLFYTSAKEDKNCDLLYK 241 (415)
Q Consensus 224 sli~tS~k~~~n~~~l~~ 241 (415)
+++++| ++++.+.+
T Consensus 480 tvi~vs----Hd~~~~~~ 493 (520)
T TIGR03269 480 TFIIVS----HDMDFVLD 493 (520)
T ss_pred EEEEEe----CCHHHHHH
Confidence 999999 45544443
No 244
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.78 E-value=1.7e-18 Score=184.93 Aligned_cols=179 Identities=13% Similarity=0.095 Sum_probs=114.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
.++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.+. +++.++.+..... +.++++..++......
T Consensus 348 ~~iL~~inl~i~~G---~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 423 (588)
T PRK13657 348 RQGVEDVSFEAKPG---QTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL-IDGTDIRTVTRASLRRNIAVVFQDAGLFNR 423 (588)
T ss_pred CceecceeEEECCC---CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE-ECCEEhhhCCHHHHHhheEEEecCcccccc
Confidence 46899999999999 99999999999999999999999999999977 6777776554333 3445554333222222
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
.+..+.. ......+..+...++......+++.+.. -++..+.. -.|||||+||++||||+..++..+++|||+
T Consensus 424 Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~---gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt- 499 (588)
T PRK13657 424 SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPD---GYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT- 499 (588)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcc---cccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-
Confidence 2322211 1111222222222221111122222100 01222221 125999999999999999888877777764
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
.++|.+..+.|++.|+.++ .+.+++.+||..
T Consensus 500 -----------------------------------------s~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~ 530 (588)
T PRK13657 500 -----------------------------------------SALDVETEAKVKAALDELM--KGRTTFIIAHRL 530 (588)
T ss_pred -----------------------------------------cCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH
Confidence 3566677777888888764 478999999764
No 245
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.78 E-value=9e-19 Score=186.70 Aligned_cols=179 Identities=13% Similarity=0.092 Sum_probs=111.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.++ +++.++.+..... +.++++..++......
T Consensus 356 ~~il~~i~l~i~~G---~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~-i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~ 431 (582)
T PRK11176 356 VPALRNINFKIPAG---KTVALVGRSGSGKSTIANLLTRFYDIDEGEIL-LDGHDLRDYTLASLRNQVALVSQNVHLFND 431 (582)
T ss_pred CccccCceEEeCCC---CEEEEECCCCCCHHHHHHHHHhccCCCCceEE-ECCEEhhhcCHHHHHhhceEEccCceeecc
Confidence 56999999999999 99999999999999999999999999999977 7777776544333 3344444333222222
Q ss_pred hhhhhccC--CCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 82 NLLRFALN--QETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 82 ~Ll~~~l~--~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
.+..+... +..+.+..+...+.....+.+++.+.. -++..+.. -.||||||||++||||+.+++..+++|||+
T Consensus 432 Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~---Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt 508 (582)
T PRK11176 432 TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN---GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_pred hHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhccc---ccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 22222211 111222222222222111112222100 01111111 125999999999999999888888888875
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+ .+|.+....+.+.|++++ .+.+++.+||..
T Consensus 509 s------------------------------------------aLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~ 539 (582)
T PRK11176 509 S------------------------------------------ALDTESERAIQAALDELQ--KNRTSLVIAHRL 539 (582)
T ss_pred c------------------------------------------cCCHHHHHHHHHHHHHHh--CCCEEEEEecch
Confidence 4 445555566777777753 478999999664
No 246
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.78 E-value=8.7e-19 Score=183.65 Aligned_cols=179 Identities=12% Similarity=0.027 Sum_probs=108.5
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc----c
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP----A 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~----~ 79 (415)
.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. |.+.++.........+.++.++.+.+ .
T Consensus 267 ~~l~~isl~i~~G---e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 342 (501)
T PRK11288 267 GLREPISFSVRAG---EIVGLFGLVGAGRSELMKLLYGATRRTAGQVY-LDGKPIDIRSPRDAIRAGIMLCPEDRKAEGI 342 (501)
T ss_pred CcccceeEEEeCC---cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEE-ECCEECCCCCHHHHHhCCCEEcCcCHhhCCC
Confidence 4799999999999 99999999999999999999999999999976 55544432111111122233333322 1
Q ss_pred chhh--hhhccCCCCCCch--hhH--HHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 80 HSNL--LRFALNQETLPHT--MVM--LVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 80 ~~~L--l~~~l~~~~~~~~--~v~--~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
+..+ ............. .+. ...+......+++.++.-....++.+..| |+|||||+.|||++..++..+++
T Consensus 343 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 343 IPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNL--SGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred cCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccC--CHHHHHHHHHHHHHccCCCEEEE
Confidence 1111 0100000000000 000 00000000112222221001223444555 99999999999999987777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||| +.++|......+.+.|++++. +|.+++++||.
T Consensus 421 DEP------------------------------------------t~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd 455 (501)
T PRK11288 421 DEP------------------------------------------TRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSD 455 (501)
T ss_pred cCC------------------------------------------CCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCC
Confidence 775 356777888999999999975 69999999943
No 247
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.77 E-value=5.6e-19 Score=181.63 Aligned_cols=171 Identities=10% Similarity=0.070 Sum_probs=115.8
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC----CcEEEEeceeecCCCCccc-----cceEEEEEe
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE----KGLALEYAYINVSDEYRED-----HTRLGVWIL 74 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~----~G~il~~~~~~v~~~~~~~-----~~~l~i~~l 74 (415)
.+++||||+|.+| |+++|||++||||||+.+.|.|+.++. .|+++ |.+.++....... ..++++.++
T Consensus 23 ~~v~~vsf~v~~G---E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~-~~g~dl~~l~~~~~r~~rg~~Ia~i~Q 98 (539)
T COG1123 23 PAVRDVSFEVEPG---EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI-LDGRDLLGLSEREMRKLRGKRIAMIFQ 98 (539)
T ss_pred eeeecceEEecCC---cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEE-ECCcchhcCCHHHHHHhccccEEEEec
Confidence 5899999999999 999999999999999999999998776 68876 6666554443322 245666655
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHHHhcCC----------chhHHHHHHhHHHHH-HHHHhhhcCChhhHHHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSMTT----------PWNIIDELHNWASVL-QDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~----------p~~~l~~l~~w~~~l-~~~~~~L~lSgGekQRl~LArA 143 (415)
+....+... .--...+..++-... ...+++.++.-.... ++++.+| |||||||+.||+|
T Consensus 99 ~p~~slnP~--------~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheL--SGG~rQRv~iAmA 168 (539)
T COG1123 99 DPMTSLNPV--------MTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQL--SGGMRQRVMIAMA 168 (539)
T ss_pred CchhhcCch--------hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCccc--CchHHHHHHHHHH
Confidence 543333221 111111111111111 112233332210111 3467777 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..+|..++.|||+ ..+|..-...|++.|+.++.++|.
T Consensus 169 La~~P~LLIaDEPT------------------------------------------TaLDvt~q~qIL~llk~l~~e~g~ 206 (539)
T COG1123 169 LALKPKLLIADEPT------------------------------------------TALDVTTQAQILDLLKDLQRELGM 206 (539)
T ss_pred HhCCCCEEEECCCc------------------------------------------cccCHHHHHHHHHHHHHHHHHcCc
Confidence 99777777777764 455556678899999999999999
Q ss_pred eEEEecc
Q psy13975 224 GLFYTSA 230 (415)
Q Consensus 224 sli~tS~ 230 (415)
+++|+||
T Consensus 207 a~l~ITH 213 (539)
T COG1123 207 AVLFITH 213 (539)
T ss_pred EEEEEcC
Confidence 9999995
No 248
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.8e-18 Score=165.29 Aligned_cols=170 Identities=11% Similarity=0.072 Sum_probs=105.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCc---cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYR---EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~---~~~~~l~i~~l 74 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.. |+.|.+. +.+.++..... ..+..+++...
T Consensus 18 ~~~l~~is~~i~~G---e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q 93 (251)
T PRK14244 18 KQILFDINLDIYKR---EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD-IDGIDVYSVDTNVVLLRAKVGMVFQ 93 (251)
T ss_pred eeeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEE-ECCEehHhcccchHHHhhhEEEEec
Confidence 46899999999999 9999999999999999999999975 4689865 55544432111 11223444433
Q ss_pred cCcccchhhhhhccCCCCCCchhhHH-HHhcC--------CchhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVML-VVSMT--------TPWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~-~~d~~--------~p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LAr 142 (415)
........+.. +..... ..+.. ..+.+++.++.. ...++..+..| |+||+||++|||
T Consensus 94 ~~~~~~~tv~~---------ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~Gq~qrv~lar 162 (251)
T PRK14244 94 KPNPFPKSIYD---------NVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFEL--SGGQQQRLCIAR 162 (251)
T ss_pred CcccccCCHHH---------HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhC--CHHHHHHHHHHH
Confidence 21111101100 000000 00000 011223333221 11233344445 999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
|+..++..+++||| +.++|....+.+.+.|++++ + |
T Consensus 163 al~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~-~-~ 198 (251)
T PRK14244 163 AIAVKPTMLLMDEP------------------------------------------CSALDPVATNVIENLIQELK-K-N 198 (251)
T ss_pred HHhcCCCEEEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHh-c-C
Confidence 99977777777765 34667777888999999884 3 8
Q ss_pred CeEEEeccC
Q psy13975 223 AGLFYTSAK 231 (415)
Q Consensus 223 asli~tS~k 231 (415)
.+++++||.
T Consensus 199 ~tiiiisH~ 207 (251)
T PRK14244 199 FTIIVVTHS 207 (251)
T ss_pred CeEEEEeCC
Confidence 899999943
No 249
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.1e-18 Score=162.60 Aligned_cols=171 Identities=11% Similarity=0.066 Sum_probs=105.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCccccceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYREDHTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~ 77 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++.........+..+.++.+.
T Consensus 16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~~~~~~~~~~~~~~~i~~~~q~ 91 (249)
T PRK14253 16 NQALKSINLPIPAR---QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT-MDGEDIYGNIDVADLRIKVGMVFQK 91 (249)
T ss_pred eeeeecceEEecCC---CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE-ECCEEcccccchHHHHhheeEEecC
Confidence 46899999999999 99999999999999999999999886 478865 5555543111111122234444433
Q ss_pred ccchhhhhhccCCCCCCchhhHH-HH-hcCCch-------hHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHhh
Q psy13975 78 PAHSNLLRFALNQETLPHTMVML-VV-SMTTPW-------NIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~-~~-d~~~p~-------~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl~ 145 (415)
+.+-.. .+.+...+. .. ...... .+++.++.+ ...+++....| |+||+||++||||+.
T Consensus 92 ~~~~~~--------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L--S~G~~qrv~laral~ 161 (249)
T PRK14253 92 PNPFPM--------SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGL--SGGQQQRLCIARTIA 161 (249)
T ss_pred CCcCcc--------cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccC--CHHHHHHHHHHHHHH
Confidence 211001 000000000 00 000000 111111211 01223333444 999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++||| +.++|.+....+.+.|++++. +.++
T Consensus 162 ~~p~llllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~--~~ti 197 (249)
T PRK14253 162 MEPDVILMDEP------------------------------------------TSALDPIATHKIEELMEELKK--NYTI 197 (249)
T ss_pred cCCCEEEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHhc--CCeE
Confidence 77777777765 357777888999999999864 5899
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++||.
T Consensus 198 i~~sh~ 203 (249)
T PRK14253 198 VIVTHS 203 (249)
T ss_pred EEEecC
Confidence 999954
No 250
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5.6e-18 Score=161.78 Aligned_cols=169 Identities=12% Similarity=0.071 Sum_probs=104.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCC--Cc-cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDE--YR-EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~--~~-~~~~~l~i~~l 74 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.++ +.|++. +.+.++... .. ..+.++++.
T Consensus 16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~-- 89 (250)
T PRK14240 16 FQALKKINLDIEEN---QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVL-LDGQDIYKSDIDVNQLRKRVGMV-- 89 (250)
T ss_pred ceeeecceEEEcCC---CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-ECCEEccccccchHHHhccEEEE--
Confidence 46899999999999 99999999999999999999998753 589876 565555321 11 112234443
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHHHhcC--Cc-------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSMT--TP-------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~--~p-------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LAr 142 (415)
.+.+.+-.+ ...+...+...... .. ..+++.++.. ...+++.+..| |+||+||++|||
T Consensus 90 ~q~~~~~~~--------t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L--S~G~~qrv~lar 159 (250)
T PRK14240 90 FQQPNPFPM--------SIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGL--SGGQQQRLCIAR 159 (250)
T ss_pred ecCCccCcc--------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCC--CHHHHHHHHHHH
Confidence 332211001 00000000000000 00 0111111110 11223334445 999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
|+..++..+++||| +.++|.+..+.+.+.|++++ + |
T Consensus 160 al~~~p~llllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~-~-~ 195 (250)
T PRK14240 160 ALAVEPEVLLMDEP------------------------------------------TSALDPISTLKIEELIQELK-K-D 195 (250)
T ss_pred HHhcCCCEEEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHh-c-C
Confidence 99988877777775 34677788888999999984 3 7
Q ss_pred CeEEEeccC
Q psy13975 223 AGLFYTSAK 231 (415)
Q Consensus 223 asli~tS~k 231 (415)
.+++++||.
T Consensus 196 ~tiii~sH~ 204 (250)
T PRK14240 196 YTIVIVTHN 204 (250)
T ss_pred CeEEEEEeC
Confidence 899999954
No 251
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.9e-18 Score=163.81 Aligned_cols=171 Identities=11% Similarity=0.080 Sum_probs=107.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+ |+.|.+. +.+.++...... ...+.++.++.+
T Consensus 17 ~~~l~~~sl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~-i~g~~~~~~~~~~~~~~~~i~~~~q 92 (251)
T PRK14251 17 YEALHGISLDFEEK---ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIK-FEGQNIYGSKMDLVELRKEVGMVFQ 92 (251)
T ss_pred eeeeeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEE-ECCEEcccccchHHHhhccEEEEec
Confidence 46899999999999 9999999999999999999999986 4789866 555554321111 112223444433
Q ss_pred cccchhhhhhccCCCCCCchhhHHH--HhcCCc-------hhHHHHHHhHH---HHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLV--VSMTTP-------WNIIDELHNWA---SVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~--~d~~~p-------~~~l~~l~~w~---~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
.+.+-.. .+.+...+.. ...... ..+++.++.|. ..+++.+..| |+||+||++||||+
T Consensus 93 ~~~~~~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~Gq~qr~~laral 162 (251)
T PRK14251 93 QPTPFPF--------SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAF--SGGQQQRICIARAL 162 (251)
T ss_pred CCccCCC--------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhC--CHHHHHHHHHHHHH
Confidence 3211000 1111000000 000000 11222223321 1234444555 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| ..++|.+..+.+.+.|++++. +.+
T Consensus 163 ~~~p~llllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~--~~t 198 (251)
T PRK14251 163 AVRPKVVLLDEP------------------------------------------TSALDPISSSEIEETLMELKH--QYT 198 (251)
T ss_pred hcCCCEEEecCC------------------------------------------CccCCHHHHHHHHHHHHHHHc--CCe
Confidence 987777777765 356777888899999999853 689
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 199 iiiisH~ 205 (251)
T PRK14251 199 FIMVTHN 205 (251)
T ss_pred EEEEECC
Confidence 9999954
No 252
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.77 E-value=3.8e-18 Score=178.77 Aligned_cols=183 Identities=13% Similarity=-0.007 Sum_probs=110.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEEEeceeecCCCCc--cccceEEEEEecCc--
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-EKGLALEYAYINVSDEYR--EDHTRLGVWILDGE-- 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-~~G~il~~~~~~v~~~~~--~~~~~l~i~~l~g~-- 77 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++..... ..+.+++++.+...
T Consensus 273 ~~~l~~is~~i~~G---e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (500)
T TIGR02633 273 RKRVDDVSFSLRRG---EILGVAGLVGAGRTELVQALFGAYPGKFEGNVF-INGKPVDIRNPAQAIRAGIAMVPEDRKRH 348 (500)
T ss_pred ccccccceeEEeCC---cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEE-ECCEECCCCCHHHHHhCCCEEcCcchhhC
Confidence 36899999999999 99999999999999999999999985 799976 55555432111 11223444432210
Q ss_pred ccchhh--hhhccCCCCCCchhhHHHHhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 78 PAHSNL--LRFALNQETLPHTMVMLVVSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 78 ~~~~~L--l~~~l~~~~~~~~~v~~~~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
..+..+ ....... .+... .....+.. ...+++.++......++.+..| |+|||||++||||+..++.
T Consensus 349 ~l~~~~tv~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGqkqrv~la~al~~~p~ 423 (500)
T TIGR02633 349 GIVPILGVGKNITLS-VLKSF--CFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRL--SGGNQQKAVLAKMLLTNPR 423 (500)
T ss_pred CcCCCCCHHHHhcch-hhhhh--ccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccC--CHHHHHHHHHHHHHhhCCC
Confidence 111111 0000000 00000 00000000 0112222222001123344455 9999999999999997777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|....+.+++.++.++. +|.+++++|
T Consensus 424 lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~l~~-~g~tviivs 460 (500)
T TIGR02633 424 VLILDEP------------------------------------------TRGVDVGAKYEIYKLINQLAQ-EGVAIIVVS 460 (500)
T ss_pred EEEEcCC------------------------------------------CCCcCHhHHHHHHHHHHHHHh-CCCEEEEEC
Confidence 7777775 346777888899999999975 599999999
Q ss_pred cCCcccHHHHHH
Q psy13975 230 AKEDKNCDLLYK 241 (415)
Q Consensus 230 ~k~~~n~~~l~~ 241 (415)
| +++.+.+
T Consensus 461 H----d~~~~~~ 468 (500)
T TIGR02633 461 S----ELAEVLG 468 (500)
T ss_pred C----CHHHHHH
Confidence 4 4444443
No 253
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.77 E-value=9.3e-19 Score=183.80 Aligned_cols=181 Identities=14% Similarity=0.077 Sum_probs=111.7
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++.........+.++.++.+......+
T Consensus 277 ~~l~~isl~i~~G---e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l 352 (510)
T PRK15439 277 EGFRNISLEVRAG---EILGLAGVVGAGRTELAETLYGLRPARGGRIM-LNGKEINALSTAQRLARGLVYLPEDRQSSGL 352 (510)
T ss_pred CCccceeEEEcCC---cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE-ECCEECCCCCHHHHHhCCcEECCCChhhCCc
Confidence 3689999999999 99999999999999999999999999999965 5555543222111112233333332110001
Q ss_pred hhhccCCCCCCchhhHHH---Hhc-CC-------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 84 LRFALNQETLPHTMVMLV---VSM-TT-------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~---~d~-~~-------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
. ............. ... .. ...+++.++.....+++.+..| |+|||||+.||||+..++..++
T Consensus 353 ~----~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgG~kqrl~la~al~~~p~lLl 426 (510)
T PRK15439 353 Y----LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTL--SGGNQQKVLIAKCLEASPQLLI 426 (510)
T ss_pred c----CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccC--CcHHHHHHHHHHHHhhCCCEEE
Confidence 0 0000000000000 000 00 0112222222001234445555 9999999999999997777777
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+||| +.++|....+.+.+.|++++. .|.++|++|
T Consensus 427 LDEP------------------------------------------t~gLD~~~~~~l~~~l~~l~~-~g~tiIivs--- 460 (510)
T PRK15439 427 VDEP------------------------------------------TRGVDVSARNDIYQLIRSIAA-QNVAVLFIS--- 460 (510)
T ss_pred ECCC------------------------------------------CcCcChhHHHHHHHHHHHHHh-CCCEEEEEC---
Confidence 7775 356777888999999999986 599999999
Q ss_pred cccHHHHHH
Q psy13975 233 DKNCDLLYK 241 (415)
Q Consensus 233 ~~n~~~l~~ 241 (415)
++++.+.+
T Consensus 461 -Hd~~~i~~ 468 (510)
T PRK15439 461 -SDLEEIEQ 468 (510)
T ss_pred -CCHHHHHH
Confidence 45544444
No 254
>KOG0098|consensus
Probab=99.77 E-value=9.7e-19 Score=154.83 Aligned_cols=159 Identities=19% Similarity=0.314 Sum_probs=133.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-CCC--CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-DSP--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~~p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+.|+|||+||.+++.. +.| +.+.+++|....+.- ++...++++|++.|++.|.++ +..+|+++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i--d~k~IKlqiwDtaGqe~frsv-----~~syYr~a 79 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI--DGKQIKLQIWDTAGQESFRSV-----TRSYYRGA 79 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE--cCceEEEEEEecCCcHHHHHH-----HHHHhccC
Confidence 57999999999999999999863 333 345666776655543 345689999999999999998 78889988
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|+++..+ +..|..|...++.+.. +
T Consensus 80 ~GalLVydit~r~s-F~hL~~wL~D~rq~~~---------------------------------------------~--- 110 (216)
T KOG0098|consen 80 AGALLVYDITRRES-FNHLTSWLEDARQHSN---------------------------------------------E--- 110 (216)
T ss_pred cceEEEEEccchhh-HHHHHHHHHHHHHhcC---------------------------------------------C---
Confidence 8 578999999887 8899999877766642 1
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.+-|++++||+||. ..+.+++|+ .+.||.+||..++.||+|++.|+++.|....+.+|.
T Consensus 111 ----NmvImLiGNKsDL~----~rR~Vs~EE-------GeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 111 ----NMVIMLIGNKSDLE----ARREVSKEE-------GEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred ----CcEEEEEcchhhhh----ccccccHHH-------HHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 67899999999994 557899888 899999999999999999999999999999999996
No 255
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3e-18 Score=163.83 Aligned_cols=178 Identities=11% Similarity=0.076 Sum_probs=105.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC-----CcEEEEeceeecCCCCc---cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE-----KGLALEYAYINVSDEYR---EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~-----~G~il~~~~~~v~~~~~---~~~~~l~i~~l 74 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+ .|.+. +.+.++..... ..+..+++...
T Consensus 17 ~~il~~~s~~i~~G---~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~~~~~~~~~~~~~~~~i~~v~q 92 (251)
T PRK14249 17 HQVLKNINMDFPER---QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVL-LDNENIYSPNLDVVNLRKRVGMVFQ 92 (251)
T ss_pred eeEecceEEEEcCC---CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEE-ECCEEccccccChHHhhceEEEEec
Confidence 35899999999999 999999999999999999999999886 58865 55555432111 11233444433
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
........+..+......+.........+ .....+++.++.| ...+++.+..| |+||+||++||||+..++..+
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~l~~~~~~~~~~L--S~Gq~qrv~laral~~~p~ll 169 (251)
T PRK14249 93 QPNPFPKSIFDNVAFGPRMLGTTAQSRLD-EVVEKSLRQAALWDEVKDNLHKSGLAL--SGGQQQRLCIARVLAIEPEVI 169 (251)
T ss_pred CCccCcCcHHHHHhhHHHhcCCChhhHHH-HHHHHHHHHhCCchhhhhHhhCCcccC--CHHHHHHHHHHHHHhcCCCEE
Confidence 21111111111000000000000000000 0000112222222 11233444445 999999999999999877777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|+.++ .|.+++++||.
T Consensus 170 lLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~--~~~tilivsh~ 205 (251)
T PRK14249 170 LMDEP------------------------------------------CSALDPVSTMRIEELMQELK--QNYTIAIVTHN 205 (251)
T ss_pred EEeCC------------------------------------------CccCCHHHHHHHHHHHHHHh--cCCEEEEEeCC
Confidence 77775 34677788888899999884 48899999953
No 256
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.77 E-value=3.5e-18 Score=153.46 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=95.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.. ..+++++ .+++.
T Consensus 14 ~~~l~~i~l~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~~----------~~~i~~~--~q~~~--- 74 (166)
T cd03223 14 RVLLKDLSFEIKPG---DRLLITGPSGTGKSSLFRALAGLWPWGSGRIG-MPE----------GEDLLFL--PQRPY--- 74 (166)
T ss_pred CeeeecCeEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECC----------CceEEEE--CCCCc---
Confidence 46899999999999 99999999999999999999999999999965 221 1234443 22111
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLF 162 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~ 162 (415)
+....+. +.+..+ ....| |+||+||++||||+..++..+++|||+
T Consensus 75 ----------~~~~tv~------------~nl~~~------~~~~L--S~G~~~rv~laral~~~p~~lllDEPt----- 119 (166)
T cd03223 75 ----------LPLGTLR------------EQLIYP------WDDVL--SGGEQQRLAFARLLLHKPKFVFLDEAT----- 119 (166)
T ss_pred ----------cccccHH------------HHhhcc------CCCCC--CHHHHHHHHHHHHHHcCCCEEEEECCc-----
Confidence 1111111 111110 23444 999999999999999888777777763
Q ss_pred cCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 163 YSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 163 ~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.++|.+..+.+.+.++++ +.+++++||.
T Consensus 120 -------------------------------------~~LD~~~~~~l~~~l~~~----~~tiiivsh~ 147 (166)
T cd03223 120 -------------------------------------SALDEESEDRLYQLLKEL----GITVISVGHR 147 (166)
T ss_pred -------------------------------------cccCHHHHHHHHHHHHHh----CCEEEEEeCC
Confidence 456666777777777764 6899999965
No 257
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.8e-18 Score=163.49 Aligned_cols=171 Identities=13% Similarity=0.137 Sum_probs=106.0
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC-----CcEEEEeceeecCCCCcc-ccceEEEEEecCc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE-----KGLALEYAYINVSDEYRE-DHTRLGVWILDGE 77 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~-----~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~ 77 (415)
.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+ .|.+. +.+.++...... ...+..+.++.+.
T Consensus 21 ~il~~is~~i~~G---e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~~~q~ 96 (261)
T PRK14258 21 KILEGVSMEIYQS---KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVE-FFNQNIYERRVNLNRLRRQVSMVHPK 96 (261)
T ss_pred eEeeceEEEEcCC---cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEE-ECCEEhhccccchHHhhccEEEEecC
Confidence 5899999999999 999999999999999999999999885 67754 444444211111 1112223333322
Q ss_pred cc-chhhhhhccCCCCCCchhhHHHHhcC-Cc--------hhHHHHHHhH--H-HHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 78 PA-HSNLLRFALNQETLPHTMVMLVVSMT-TP--------WNIIDELHNW--A-SVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 78 ~~-~~~Ll~~~l~~~~~~~~~v~~~~d~~-~p--------~~~l~~l~~w--~-~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
.. +. + .+.+.......... .+ ..+++.++.+ . ..+++.+..| |+||+||++|||++
T Consensus 97 ~~l~~-~--------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--SgGq~qrv~laral 165 (261)
T PRK14258 97 PNLFP-M--------SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDL--SGGQQQRLCIARAL 165 (261)
T ss_pred CccCc-c--------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccC--CHHHHHHHHHHHHH
Confidence 11 11 0 11110000000000 00 1122222221 1 1223333444 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|.+....+.+.|+.++.+.|.+
T Consensus 166 ~~~p~vllLDEP------------------------------------------~~~LD~~~~~~l~~~l~~l~~~~~~t 203 (261)
T PRK14258 166 AVKPKVLLMDEP------------------------------------------CFGLDPIASMKVESLIQSLRLRSELT 203 (261)
T ss_pred hcCCCEEEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 977777777765 34677788889999999988767899
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 204 iiivsH~ 210 (261)
T PRK14258 204 MVIVSHN 210 (261)
T ss_pred EEEEECC
Confidence 9999944
No 258
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=182.14 Aligned_cols=175 Identities=13% Similarity=0.080 Sum_probs=109.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........+.++.++.+......+
T Consensus 262 ~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~ 337 (491)
T PRK10982 262 PSIRDVSFDLHKG---EILGIAGLVGAKRTDIVETLFGIREKSAGTIT-LHGKKINNHNANEAINHGFALVTEERRSTGI 337 (491)
T ss_pred cccceeeEEEeCC---cEEEEecCCCCCHHHHHHHHcCCCcCCccEEE-ECCEECCCCCHHHHHHCCCEEcCCchhhCCc
Confidence 5899999999999 99999999999999999999999999999976 5555543222111122223333332210001
Q ss_pred hhhccCCCCCCchhhHHHH-------hc-CC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 84 LRFALNQETLPHTMVMLVV-------SM-TT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~-------d~-~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
. ....+.+..+...+ .+ .. ...+++.+..+....++.+..| |+|||||++|||++..++.
T Consensus 338 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGq~qrv~la~al~~~p~ 411 (491)
T PRK10982 338 Y----AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSL--SGGNQQKVIIGRWLLTQPE 411 (491)
T ss_pred c----cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccC--CcHHHHHHHHHHHHhcCCC
Confidence 0 00000000000000 00 00 0112222222111234455555 9999999999999998887
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|....+.+++.++.++. +|.+++++|
T Consensus 412 illLDEPt------------------------------------------~gLD~~~~~~~~~~l~~l~~-~~~tvi~vs 448 (491)
T PRK10982 412 ILMLDEPT------------------------------------------RGIDVGAKFEIYQLIAELAK-KDKGIIIIS 448 (491)
T ss_pred EEEEcCCC------------------------------------------cccChhHHHHHHHHHHHHHH-CCCEEEEEC
Confidence 77777763 46777888899999999875 699999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 449 Hd 450 (491)
T PRK10982 449 SE 450 (491)
T ss_pred CC
Confidence 44
No 259
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.77 E-value=1.9e-18 Score=183.75 Aligned_cols=180 Identities=12% Similarity=0.083 Sum_probs=111.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
.++|+++||+|++| ++++|+|+||||||||++.|+|+++|++|.++ +++.++....... +..+++..++......
T Consensus 328 ~~~l~~i~~~i~~G---~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~-~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ 403 (569)
T PRK10789 328 HPALENVNFTLKPG---QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR-FHDIPLTKLQLDSWRSRLAVVSQTPFLFSD 403 (569)
T ss_pred CccccCeeEEECCC---CEEEEECCCCCCHHHHHHHHhcccCCCCCEEE-ECCEEHhhCCHHHHHhheEEEccCCeeccc
Confidence 46899999999999 99999999999999999999999999999977 6666665433222 2334444322211112
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.+..+.. ......+..+...++....+.++..+ +.+...+.+... .||+|||||++||||+.+++..+++||++
T Consensus 404 ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~--~LSgGq~qRi~lARall~~~~illlDEpt-- 479 (569)
T PRK10789 404 TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGV--MLSGGQKQRISIARALLLNAEILILDDAL-- 479 (569)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCC--cCCHHHHHHHHHHHHHhcCCCEEEEECcc--
Confidence 2211111 11111111111111111111111111 000011112222 25999999999999999888888888764
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
.++|.+..+.+++.|+.++ .|.+++++||..
T Consensus 480 ----------------------------------------s~LD~~~~~~i~~~l~~~~--~~~tii~itH~~ 510 (569)
T PRK10789 480 ----------------------------------------SAVDGRTEHQILHNLRQWG--EGRTVIISAHRL 510 (569)
T ss_pred ----------------------------------------ccCCHHHHHHHHHHHHHHh--CCCEEEEEecch
Confidence 4566677788888898874 588999999763
No 260
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.6e-18 Score=169.01 Aligned_cols=170 Identities=9% Similarity=0.067 Sum_probs=105.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+ |+.|.+. +.+.++...... ...+..+.++.+
T Consensus 52 ~~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~-~~g~~i~~~~~~~~~~~~~i~~v~q 127 (286)
T PRK14275 52 FEAVKKVNADILSK---YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM-FDGEDIYGKFTDEVLLRKKIGMVFQ 127 (286)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEE-ECCEEhhhcccchHHhhhcEEEECC
Confidence 35899999999999 9999999999999999999999854 4889866 555554321111 112223444443
Q ss_pred cccchhhhhhccCCCCCCchhhHH--HHhcCCc-------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVML--VVSMTTP-------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~--~~d~~~p-------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
.+.+ ....+.+...+. ....... ..+++.++.+ ...+++.+..| |+||+||++||||+
T Consensus 128 ~~~l--------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L--SgGq~qrv~LAraL 197 (286)
T PRK14275 128 KPNP--------FPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGL--SGGQQQRLCVARTL 197 (286)
T ss_pred CCCC--------CccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhC--CHHHHHHHHHHHHH
Confidence 3211 000011100000 0000000 0112222211 12234445555 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| ..++|.+..+.+.+.|+.++. +.+
T Consensus 198 ~~~p~lllLDEP------------------------------------------t~gLD~~~~~~l~~~L~~~~~--~~t 233 (286)
T PRK14275 198 AVEPEILLLDEP------------------------------------------TSALDPKATAKIEDLIQELRG--SYT 233 (286)
T ss_pred hcCCCEEEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHhc--CCe
Confidence 987777777765 356777888889999998853 689
Q ss_pred EEEecc
Q psy13975 225 LFYTSA 230 (415)
Q Consensus 225 li~tS~ 230 (415)
++++||
T Consensus 234 vIivsH 239 (286)
T PRK14275 234 IMIVTH 239 (286)
T ss_pred EEEEeC
Confidence 999994
No 261
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=4.7e-18 Score=158.59 Aligned_cols=164 Identities=12% Similarity=0.113 Sum_probs=106.1
Q ss_pred eEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc-----cccceEEEEEecCccc-ch
Q psy13975 8 VFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR-----EDHTRLGVWILDGEPA-HS 81 (415)
Q Consensus 8 ~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~-----~~~~~l~i~~l~g~~~-~~ 81 (415)
|+||+|.+ ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... .....+++ +.+... +.
T Consensus 16 ~vsl~i~~----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~--~~q~~~~~~ 88 (214)
T cd03297 16 KIDFDLNE----EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIV-LNGTVLFDSRKKINLPPQQRKIGL--VFQQYALFP 88 (214)
T ss_pred CceEEEcc----eeEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEecccccchhhhhhHhhcEEE--EecCCccCC
Confidence 99999974 59999999999999999999999999999975 55554432110 11223333 333221 11
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
.+ .+.+...+...... ....+++.++.. ..+++.+..| |+||+||+.||||+..++..+++||
T Consensus 89 ~~--------t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--S~G~~qrv~la~al~~~p~llllDE 157 (214)
T cd03297 89 HL--------NVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQL--SGGEKQRVALARALAAQPELLLLDE 157 (214)
T ss_pred CC--------CHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccC--CHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 11 11111000000000 011233333332 3345555555 9999999999999997777777776
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
| +.++|.+..+.+.+.+++++.++|.+++++||.
T Consensus 158 P------------------------------------------t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 191 (214)
T cd03297 158 P------------------------------------------FSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191 (214)
T ss_pred C------------------------------------------cccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence 5 457777889999999999988789999999944
No 262
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.77 E-value=9.8e-19 Score=182.77 Aligned_cols=191 Identities=13% Similarity=0.041 Sum_probs=116.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEEEeceeecCCCCc--cccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-EKGLALEYAYINVSDEYR--EDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-~~G~il~~~~~~v~~~~~--~~~~~l~i~~l~g~~~ 79 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.++ ++|.+. |.+.++..... ..+.++++........
T Consensus 273 ~~il~~vsl~i~~G---e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (490)
T PRK10938 273 RPILHNLSWQVNPG---EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLT-LFGRRRGSGETIWDIKKHIGYVSSSLHLD 348 (490)
T ss_pred eeEEeeceEEEcCC---CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEE-EecccCCCCCCHHHHHhhceEECHHHHhh
Confidence 35899999999999 99999999999999999999998765 689866 44433211100 1122344432211110
Q ss_pred ch---hhhhhccCC-----CCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 80 HS---NLLRFALNQ-----ETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 80 ~~---~Ll~~~l~~-----~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
+. ....+.... ..+.... .........+++.++......++.+..| |+|||||++||||+..++..+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGq~qrv~la~al~~~p~ll 423 (490)
T PRK10938 349 YRVSTSVRNVILSGFFDSIGIYQAVS---DRQQKLAQQWLDILGIDKRTADAPFHSL--SWGQQRLALIVRALVKHPTLL 423 (490)
T ss_pred cccCCcHHHHHHhccccccccccCCC---HHHHHHHHHHHHHcCCchhhccCchhhC--CHHHHHHHHHHHHHhcCCCEE
Confidence 00 000000000 0000000 0000001123344443211445566666 999999999999999777777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|++++.+.+.+++++|
T Consensus 424 lLDEP------------------------------------------t~gLD~~~~~~l~~~L~~l~~~~~~tviivs-- 459 (490)
T PRK10938 424 ILDEP------------------------------------------LQGLDPLNRQLVRRFVDVLISEGETQLLFVS-- 459 (490)
T ss_pred EEcCc------------------------------------------cccCCHHHHHHHHHHHHHHHhcCCcEEEEEe--
Confidence 77765 3577788899999999999876556799999
Q ss_pred CcccHHHHHHHHHHHHh
Q psy13975 232 EDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 232 ~~~n~~~l~~~l~h~l~ 248 (415)
++++.+.+++.++++
T Consensus 460 --Hd~~~~~~~~~d~v~ 474 (490)
T PRK10938 460 --HHAEDAPACITHRLE 474 (490)
T ss_pred --cchhhhhhhhheeEE
Confidence 455555555545444
No 263
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.1e-18 Score=161.17 Aligned_cols=171 Identities=12% Similarity=0.087 Sum_probs=105.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC-----CcEEEEeceeecCCCCc-cccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE-----KGLALEYAYINVSDEYR-EDHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~-----~G~il~~~~~~v~~~~~-~~~~~l~i~~l~g 76 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+ +|.+. +.+.++..... ....+..+.++.+
T Consensus 17 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q 92 (252)
T PRK14272 17 KQAVKNVNLDVQRG---TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRIL-LDGQDIYGPRVDPVAMRRRVGMVFQ 92 (252)
T ss_pred EEeeccceEEEcCC---CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEE-ECCEEcccCccCHHHhhceeEEEec
Confidence 46899999999999 999999999999999999999998764 68866 55555432111 1111223333333
Q ss_pred cc-cchhhhhhccCCCCCCchhhHHH--HhcCCchh-------HHHHHHhHH---HHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 77 EP-AHSNLLRFALNQETLPHTMVMLV--VSMTTPWN-------IIDELHNWA---SVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 77 ~~-~~~~Ll~~~l~~~~~~~~~v~~~--~d~~~p~~-------~l~~l~~w~---~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
.+ .+..+ .+.+...... ........ ++..+..|. ...+..+..| |+||+||++||||
T Consensus 93 ~~~~~~~~--------t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L--S~G~~qrv~lara 162 (252)
T PRK14272 93 KPNPFPTM--------SVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGL--SGGQQQRLCIARA 162 (252)
T ss_pred cCccCcCC--------CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccC--CHHHHHHHHHHHH
Confidence 22 11111 1111100000 00001111 111122221 1223344445 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++||| ..++|......+.+.|+.++ + +.
T Consensus 163 l~~~p~llllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~-~-~~ 198 (252)
T PRK14272 163 LAVEPEILLMDEP------------------------------------------TSALDPASTARIEDLMTDLK-K-VT 198 (252)
T ss_pred HhcCCCEEEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHh-c-CC
Confidence 9988877777775 34667778889999999985 3 68
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 199 tiii~sH~ 206 (252)
T PRK14272 199 TIIIVTHN 206 (252)
T ss_pred eEEEEeCC
Confidence 99999954
No 264
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=9.3e-18 Score=160.26 Aligned_cols=171 Identities=11% Similarity=0.079 Sum_probs=105.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+..| ++|.+. +.+.++...... ...+..+.++.+
T Consensus 16 ~~~l~~i~~~i~~G---e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~-i~g~~~~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14262 16 KKAVKNVTMKIFKN---QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIY-FKGQDIYDPQLDVTEYRKKVGMVFQ 91 (250)
T ss_pred ceeEeeeeEeecCC---CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE-ECCEEcccchhhHHHhhhhEEEEec
Confidence 46899999999999 99999999999999999999999873 789866 555454321111 111223333333
Q ss_pred cccchhhhhhccCCCCCCchhhHHHHhcC-Cc--------hhHHHHHHhHH---HHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLVVSMT-TP--------WNIIDELHNWA---SVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~-~p--------~~~l~~l~~w~---~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
++.+-.. ...+...+...... .. +.+++.++.+. ...++.+..| |+||+||++||||+
T Consensus 92 ~~~~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~Gq~qr~~la~al 161 (250)
T PRK14262 92 KPTPFPM--------SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRL--SGGQQQRLCIARAL 161 (250)
T ss_pred CCccCcc--------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhc--CHHHHHHHHHHHHH
Confidence 3211001 11110000000000 00 11122222210 1233444445 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|....+.+.+.|++++. +.+
T Consensus 162 ~~~p~llllDEP------------------------------------------~~~LD~~~~~~l~~~l~~~~~--~~t 197 (250)
T PRK14262 162 AVEPEVILLDEP------------------------------------------TSALDPIATQRIEKLLEELSE--NYT 197 (250)
T ss_pred hCCCCEEEEeCC------------------------------------------ccccCHHHHHHHHHHHHHHhc--CcE
Confidence 987777777765 346777788899999999863 689
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 198 ili~sH~ 204 (250)
T PRK14262 198 IVIVTHN 204 (250)
T ss_pred EEEEeCC
Confidence 9999954
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.3e-18 Score=184.83 Aligned_cols=179 Identities=9% Similarity=0.097 Sum_probs=115.4
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecC----------CCCcc---c--cce
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVS----------DEYRE---D--HTR 68 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~----------~~~~~---~--~~~ 68 (415)
++|+||||+|.+| ++++|+|+||||||||+++|+|+++|+.|.+. +.+..+. ..... . ..+
T Consensus 30 ~~l~~is~~v~~G---e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 30 AAVRNLSFSLQRG---ETLAIVGESGSGKSVTALALMRLLEQAGGLVQ-CDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eEEEeeEEEECCC---CEEEEECCCCChHHHHHHHHHcCCCCCCeEEE-ECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 5899999999999 99999999999999999999999999999865 4443221 00100 0 123
Q ss_pred EEEEEecCc-ccchhhhhhccCCCCCCchhhH-HHH--hcC------CchhHHHHHHhH--HHHHHHHHhhhcCChhhHH
Q psy13975 69 LGVWILDGE-PAHSNLLRFALNQETLPHTMVM-LVV--SMT------TPWNIIDELHNW--ASVLQDHIDSLNIGAHDYQ 136 (415)
Q Consensus 69 l~i~~l~g~-~~~~~Ll~~~l~~~~~~~~~v~-~~~--d~~------~p~~~l~~l~~w--~~~l~~~~~~L~lSgGekQ 136 (415)
+++..+... ..+..+ .+.+.... ... .+. +...+++.++.. ...+++.+.+| |+||||
T Consensus 106 ig~v~Q~~~~~l~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L--SgGq~Q 175 (623)
T PRK10261 106 MAMIFQEPMTSLNPVF--------TVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL--SGGMRQ 175 (623)
T ss_pred EEEEEeCchhhcCCCC--------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC--CHHHHH
Confidence 555544321 011111 11111000 000 000 011233333331 12345566666 999999
Q ss_pred HHHHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHH
Q psy13975 137 AGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRK 216 (415)
Q Consensus 137 Rl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~ 216 (415)
||+|||||..++..+++|||+ .++|......+.+.+++
T Consensus 176 Rv~iA~AL~~~P~lLllDEPt------------------------------------------~~LD~~~~~~l~~ll~~ 213 (623)
T PRK10261 176 RVMIAMALSCRPAVLIADEPT------------------------------------------TALDVTIQAQILQLIKV 213 (623)
T ss_pred HHHHHHHHhCCCCEEEEeCCC------------------------------------------CccCHHHHHHHHHHHHH
Confidence 999999999877777777753 46677788889999999
Q ss_pred HHHHhCCeEEEeccCCcccHHHHHHH
Q psy13975 217 FCLKFGAGLFYTSAKEDKNCDLLYKY 242 (415)
Q Consensus 217 l~~~~Gasli~tS~k~~~n~~~l~~~ 242 (415)
++.++|.+++++|| +++.+..+
T Consensus 214 l~~~~g~tvi~itH----dl~~~~~~ 235 (623)
T PRK10261 214 LQKEMSMGVIFITH----DMGVVAEI 235 (623)
T ss_pred HHHhcCCEEEEEcC----CHHHHHHh
Confidence 99888999999994 44444443
No 266
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.77 E-value=1.7e-18 Score=184.15 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=111.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|.|+++|++|.++ +++.++.....+. +..+++..++......
T Consensus 345 ~~il~~inl~i~~G---~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~-i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~ 420 (571)
T TIGR02203 345 RPALDSISLVIEPG---ETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL-LDGHDLADYTLASLRRQVALVSQDVVLFND 420 (571)
T ss_pred CccccCeeEEecCC---CEEEEECCCCCCHHHHHHHHHhccCCCCCeEE-ECCEeHHhcCHHHHHhhceEEccCcccccc
Confidence 46899999999999 99999999999999999999999999999977 6666665543333 2334444332211222
Q ss_pred hhhhhcc-CC-CCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 82 NLLRFAL-NQ-ETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 82 ~Ll~~~l-~~-~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
.+..+.. .. ....+..+...++....+.++..+.. -++..+.. -.||||||||++||||+.+++..+++|||+
T Consensus 421 Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~---gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpt 497 (571)
T TIGR02203 421 TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPL---GLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT 497 (571)
T ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcC---cccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 2222111 11 01222112222221111111111100 01111111 125999999999999999888888888864
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+ ++|.+..+.|++.|++++ .+.+++.+||..
T Consensus 498 s------------------------------------------~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~ 528 (571)
T TIGR02203 498 S------------------------------------------ALDNESERLVQAALERLM--QGRTTLVIAHRL 528 (571)
T ss_pred c------------------------------------------cCCHHHHHHHHHHHHHHh--CCCEEEEEehhh
Confidence 4 555666777888888764 468999999663
No 267
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5.2e-18 Score=164.57 Aligned_cols=168 Identities=16% Similarity=0.160 Sum_probs=105.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCc--cccceEEEEEec
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYR--EDHTRLGVWILD 75 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~--~~~~~l~i~~l~ 75 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++..... ....++++. .
T Consensus 34 ~~il~~vs~~i~~G---e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~i~~v--~ 107 (276)
T PRK14271 34 KTVLDQVSMGFPAR---AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL-LGGRSIFNYRDVLEFRRRVGML--F 107 (276)
T ss_pred EEEeeeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEE-ECCEEccccchhHHHhhheEEe--c
Confidence 46899999999999 99999999999999999999999885 688865 55544432111 112233333 3
Q ss_pred Cccc-chhhhhhccCCCCCCchhhHHHH--hcCCc-------hhHHHHHHhHH---HHHHHHHhhhcCChhhHHHHHHHH
Q psy13975 76 GEPA-HSNLLRFALNQETLPHTMVMLVV--SMTTP-------WNIIDELHNWA---SVLQDHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 76 g~~~-~~~Ll~~~l~~~~~~~~~v~~~~--d~~~p-------~~~l~~l~~w~---~~l~~~~~~L~lSgGekQRl~LAr 142 (415)
+++. |. . ...+...+... ..... ..+++.++.+. ..+++.+..| |+||+||++|||
T Consensus 108 q~~~l~~-~--------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~L--SgGq~qrl~LAr 176 (276)
T PRK14271 108 QRPNPFP-M--------SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRL--SGGQQQLLCLAR 176 (276)
T ss_pred cCCccCC-c--------cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccC--CHHHHHHHHHHH
Confidence 3221 10 0 01110000000 00000 11222222210 1223334445 999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
|+..++..+++||| +.+++....+.+.+.|++++. +
T Consensus 177 al~~~p~lllLDEP------------------------------------------t~~LD~~~~~~l~~~L~~~~~--~ 212 (276)
T PRK14271 177 TLAVNPEVLLLDEP------------------------------------------TSALDPTTTEKIEEFIRSLAD--R 212 (276)
T ss_pred HHhcCCCEEEEcCC------------------------------------------cccCCHHHHHHHHHHHHHHhc--C
Confidence 99987777777775 346677778889999999864 4
Q ss_pred CeEEEeccC
Q psy13975 223 AGLFYTSAK 231 (415)
Q Consensus 223 asli~tS~k 231 (415)
.+++++||.
T Consensus 213 ~tiiivsH~ 221 (276)
T PRK14271 213 LTVIIVTHN 221 (276)
T ss_pred CEEEEEeCC
Confidence 799999953
No 268
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.3e-18 Score=165.92 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=108.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCC--C-ccccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDE--Y-REDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~--~-~~~~~~l~i~~l 74 (415)
.++|+|+||+|.+| ++++|+|+||||||||+++|+|+.. |+.|.+. +.+.++... . .....++++...
T Consensus 23 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q 98 (264)
T PRK14243 23 FLAVKNVWLDIPKN---QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT-FHGKNLYAPDVDPVEVRRRIGMVFQ 98 (264)
T ss_pred EEEeecceEEEcCC---CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE-ECCEEccccccChHHHhhhEEEEcc
Confidence 36899999999999 9999999999999999999999875 3789865 555544211 1 111223444332
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHHHhc-CCchhHHHHHHhHH---HHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSM-TTPWNIIDELHNWA---SVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~-~~p~~~l~~l~~w~---~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
........+.............. ... .....+++.++.|. ..+++.+..| |+||+||++||||+..++..
T Consensus 99 ~~~~~~~tv~enl~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L--SgGq~qrv~laral~~~p~l 172 (264)
T PRK14243 99 KPNPFPKSIYDNIAYGARINGYK----GDMDELVERSLRQAALWDEVKDKLKQSGLSL--SGGQQQRLCIARAIAVQPEV 172 (264)
T ss_pred CCccccccHHHHHHhhhhhcCcc----hHHHHHHHHHHHHhCchhhHHHHhcCCcccC--CHHHHHHHHHHHHHhcCCCE
Confidence 21111011111000000000000 000 00001222223321 1123334445 99999999999999987777
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++||| ..++|.+..+.+.+.|+.++. +.+++++||
T Consensus 173 llLDEP------------------------------------------t~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH 208 (264)
T PRK14243 173 ILMDEP------------------------------------------CSALDPISTLRIEELMHELKE--QYTIIIVTH 208 (264)
T ss_pred EEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHhc--CCEEEEEec
Confidence 777775 346777888889999999864 478999984
Q ss_pred CCcccHHHHHHHH
Q psy13975 231 KEDKNCDLLYKYL 243 (415)
Q Consensus 231 k~~~n~~~l~~~l 243 (415)
+++.+.++.
T Consensus 209 ----~~~~~~~~~ 217 (264)
T PRK14243 209 ----NMQQAARVS 217 (264)
T ss_pred ----CHHHHHHhC
Confidence 444444433
No 269
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.76 E-value=4.1e-18 Score=165.11 Aligned_cols=164 Identities=12% Similarity=0.120 Sum_probs=109.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
..+|+|+||+|.+| ++++|+|+||||||||+++|.|+.+ .+|.++ +++.++....... +.++++. .+.+.+
T Consensus 17 ~~~l~~isl~I~~G---e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~-i~g~~i~~~~~~~lr~~i~~v--~q~~~l- 88 (275)
T cd03289 17 NAVLENISFSISPG---QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQ-IDGVSWNSVPLQKWRKAFGVI--PQKVFI- 88 (275)
T ss_pred CcceeceEEEEcCC---CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEE-ECCEEhhhCCHHHHhhhEEEE--CCCccc-
Confidence 45899999999999 9999999999999999999999987 789976 6665554322211 2344444 332211
Q ss_pred hhhhhccCCCCCCchhhHHHHhc------CCchhHHHHHHhHHHHHHHHHhhh---------cCChhhHHHHHHHHHhhc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSM------TTPWNIIDELHNWASVLQDHIDSL---------NIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~------~~p~~~l~~l~~w~~~l~~~~~~L---------~lSgGekQRl~LArAl~~ 146 (415)
+. .++...++. ...|.+++.++. ...+++.+..+ .||+||+||++||||+..
T Consensus 89 -----------f~-~tv~~nl~~~~~~~~~~~~~~l~~~gL-~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~ 155 (275)
T cd03289 89 -----------FS-GTFRKNLDPYGKWSDEEIWKVAEEVGL-KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS 155 (275)
T ss_pred -----------ch-hhHHHHhhhccCCCHHHHHHHHHHcCC-HHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 00 011111110 012333444444 24445555441 159999999999999997
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
++..+++||| +.++|.+....+++.|+.+. .|.+++
T Consensus 156 ~p~illlDEp------------------------------------------ts~LD~~~~~~l~~~l~~~~--~~~tii 191 (275)
T cd03289 156 KAKILLLDEP------------------------------------------SAHLDPITYQVIRKTLKQAF--ADCTVI 191 (275)
T ss_pred CCCEEEEECc------------------------------------------cccCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 7777777765 34666677788888888763 489999
Q ss_pred EeccC
Q psy13975 227 YTSAK 231 (415)
Q Consensus 227 ~tS~k 231 (415)
++||.
T Consensus 192 ~isH~ 196 (275)
T cd03289 192 LSEHR 196 (275)
T ss_pred EEECC
Confidence 99955
No 270
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.2e-18 Score=162.56 Aligned_cols=171 Identities=11% Similarity=0.043 Sum_probs=103.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCC--CC-ccccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSD--EY-REDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~--~~-~~~~~~l~i~~l 74 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+..| ++|.++ +.+.++.. .. .....+..+.++
T Consensus 29 ~~vl~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~-~~g~~~~~~~~~~~~~~~~~~i~~~ 104 (265)
T PRK14252 29 YQALKNINMMVHEK---QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII-LHPDNVNILSPEVDPIEVRMRISMV 104 (265)
T ss_pred eeeeeeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE-EcCccccccccccCHHHHhccEEEE
Confidence 36899999999999 99999999999999999999999875 678865 44333221 00 001112233333
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHH--HhcC-------CchhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLV--VSMT-------TPWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~--~d~~-------~p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LAr 142 (415)
.+...+ ....+.+...... .... ....+++.++.+ ...+++....| |+||+||++|||
T Consensus 105 ~q~~~~--------~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L--S~G~~qrv~lar 174 (265)
T PRK14252 105 FQKPNP--------FPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL--SGGQQQRLCIAR 174 (265)
T ss_pred ccCCcC--------CcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccC--CHHHHHHHHHHH
Confidence 332211 0000000000000 0000 001122222221 11223333444 999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
|+..++..+++||| +.++|.+..+.+++.|++++. +
T Consensus 175 al~~~p~llllDEP------------------------------------------t~gLD~~~~~~l~~~l~~l~~--~ 210 (265)
T PRK14252 175 ALATDPEILLFDEP------------------------------------------TSALDPIATASIEELISDLKN--K 210 (265)
T ss_pred HHHcCCCEEEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHHh--C
Confidence 99987777777775 346777788899999999863 6
Q ss_pred CeEEEeccC
Q psy13975 223 AGLFYTSAK 231 (415)
Q Consensus 223 asli~tS~k 231 (415)
.+++++||.
T Consensus 211 ~tiiivth~ 219 (265)
T PRK14252 211 VTILIVTHN 219 (265)
T ss_pred CEEEEEecC
Confidence 899999943
No 271
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.6e-18 Score=161.00 Aligned_cols=171 Identities=11% Similarity=0.024 Sum_probs=105.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++...... ...+..+.++.+
T Consensus 17 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~~~q 92 (251)
T PRK14270 17 KQALNDINLPIYEN---KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL-LDGKNIYDKDVDVVELRKRVGMVFQ 92 (251)
T ss_pred eeeeeceeEEEcCC---CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE-ECCEecccccccHHHHHhheEEEec
Confidence 46899999999999 99999999999999999999999875 689866 555555321111 111222333333
Q ss_pred cccchhhhhhccCCCCCCchhhHHHHhcC--C-------chhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLVVSMT--T-------PWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~--~-------p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
...+-.. +..+...+...... . .+.+++.++.+ ...+++.+..| |+||+||++||||+
T Consensus 93 ~~~~~~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~G~~qrv~laral 162 (251)
T PRK14270 93 KPNPFPM--------SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKL--SGGQQQRLCIARTI 162 (251)
T ss_pred CCCcCCC--------cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC--CHHHHHHHHHHHHH
Confidence 2211001 00010000000000 0 01122222221 11223344445 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|.+..+.+.+.|+++.. +.+
T Consensus 163 ~~~p~llllDEP------------------------------------------~~~LD~~~~~~l~~~L~~~~~--~~t 198 (251)
T PRK14270 163 AVKPDVILMDEP------------------------------------------TSALDPISTLKIEDLMVELKK--EYT 198 (251)
T ss_pred hcCCCEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHh--CCe
Confidence 987777777775 346777888889999999864 588
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 199 iiivsH~ 205 (251)
T PRK14270 199 IVIVTHN 205 (251)
T ss_pred EEEEEcC
Confidence 9999943
No 272
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.9e-18 Score=162.32 Aligned_cols=171 Identities=14% Similarity=0.107 Sum_probs=105.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC--CC---CCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID--SP---EKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~--~p---~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+. .| ++|.+. +.+.++...... ...+..+.++.+
T Consensus 18 ~~~l~~~s~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~v~q 93 (252)
T PRK14239 18 KKALNSVSLDFYPN---EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV-YNGHNIYSPRTDTVDLRKEIGMVFQ 93 (252)
T ss_pred eeeeeeeeEEEcCC---cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE-ECCEECcCcccchHhhhhcEEEEec
Confidence 46899999999999 999999999999999999999984 36 489866 555554321111 111223333333
Q ss_pred cccchhhhhhccCCCCCCchhhHHHHhcC--Cc-------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLVVSMT--TP-------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~--~p-------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
.+.+ ....+.+...+...... .. ..+++.+..+ ...+++.+..| |+||+||++||||+
T Consensus 94 ~~~~--------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~G~~qrv~laral 163 (252)
T PRK14239 94 QPNP--------FPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGL--SGGQQQRVCIARVL 163 (252)
T ss_pred CCcc--------CcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccC--CHHHHHHHHHHHHH
Confidence 3211 00011111000000000 00 0112222211 11233344445 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|.+..+.+.+.|++++. +.+
T Consensus 164 ~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~--~~t 199 (252)
T PRK14239 164 ATSPKIILLDEP------------------------------------------TSALDPISAGKIEETLLGLKD--DYT 199 (252)
T ss_pred hcCCCEEEEcCC------------------------------------------ccccCHHHHHHHHHHHHHHhh--CCe
Confidence 977777777765 357777888999999999853 689
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 200 ii~~sH~ 206 (252)
T PRK14239 200 MLLVTRS 206 (252)
T ss_pred EEEEECC
Confidence 9999954
No 273
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=2.1e-18 Score=187.50 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=113.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|+|+++|++|.++ +++.++.+.+... +..+++..++......
T Consensus 470 ~~il~~i~l~i~~G---~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~-idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ 545 (694)
T TIGR01846 470 PEVLSNLNLDIKPG---EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL-VDGVDLAIADPAWLRRQMGVVLQENVLFSR 545 (694)
T ss_pred ccccccceEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEehhhCCHHHHHHhCeEEccCCeehhh
Confidence 45899999999999 99999999999999999999999999999987 7777776654433 3344444332211222
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.+..+.. .........+...++....+.+++.+. .+...+.+... .||+|||||++||||+.+++..+++||++
T Consensus 546 ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~--~LSgGq~qri~lARall~~~~ililDEpt-- 621 (694)
T TIGR01846 546 SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGA--NLSGGQRQRIAIARALVGNPRILIFDEAT-- 621 (694)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCC--CCCHHHHHHHHHHHHHHhCCCEEEEECCC--
Confidence 2211111 111111111111121111111111110 00011111112 35999999999999999888888888764
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
.++|.+..+.+.+.|+++. .|.+++++||+.
T Consensus 622 ----------------------------------------s~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~ 652 (694)
T TIGR01846 622 ----------------------------------------SALDYESEALIMRNMREIC--RGRTVIIIAHRL 652 (694)
T ss_pred ----------------------------------------cCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh
Confidence 3566677888888888873 588999999764
No 274
>KOG0057|consensus
Probab=99.76 E-value=1.2e-18 Score=176.73 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=121.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
++||+++||+|++| ++|+|+|+|||||||+||+|.++++ .+|.++ .++.++.....+. +..++++.++...+..
T Consensus 365 ~~iL~gvsf~I~kG---ekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~-IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd 439 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKG---EKVAIVGSNGSGKSTILRLLLRFFD-YSGSIL-IDGQDIKEVSLESLRQSIGVVPQDSVLFND 439 (591)
T ss_pred CceecceeEEecCC---CEEEEECCCCCCHHHHHHHHHHHhc-cCCcEE-ECCeeHhhhChHHhhhheeEeCCcccccch
Confidence 35999999999999 9999999999999999999999998 899987 7777876654433 4456666555544444
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.++.+.. ......+..|+........+..+..+ +.+...+.+.-.. ||||||||+++|||+..+++..++||++|.
T Consensus 440 TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~--LSGGekQrvslaRa~lKda~Il~~DEaTS~ 517 (591)
T KOG0057|consen 440 TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLM--LSGGEKQRVSLARAFLKDAPILLLDEATSA 517 (591)
T ss_pred hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccc--cccchHHHHHHHHHHhcCCCeEEecCcccc
Confidence 4433322 22223333333322222223333333 1222334444433 499999999999999999999999999886
Q ss_pred ccccC-ccccCCCccccccccCCcEEEEEeCcchhhhh
Q psy13975 160 YLFYS-SVSVIPGEGILERNLGVDIVVVVTKTDYMSTL 196 (415)
Q Consensus 160 ~~~~~-~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~l 196 (415)
.+... ...+- ..+..--+.+++.|.+..|+....
T Consensus 518 LD~~TE~~i~~---~i~~~~~~rTvI~IvH~l~ll~~~ 552 (591)
T KOG0057|consen 518 LDSETEREILD---MIMDVMSGRTVIMIVHRLDLLKDF 552 (591)
T ss_pred cchhhHHHHHH---HHHHhcCCCeEEEEEecchhHhcC
Confidence 65321 11110 011112389999999999998653
No 275
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.4e-18 Score=164.28 Aligned_cols=171 Identities=12% Similarity=0.087 Sum_probs=105.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCc-cccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYR-EDHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~-~~~~~l~i~~l~g 76 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+ |++|++. +.+.++..... ....+.++.++.+
T Consensus 33 ~~il~~vsl~i~~G---e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~v~q 108 (267)
T PRK14237 33 KEAIKGIDMQFEKN---KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL-YRGIDINRKEINVYEMRKHIGMVFQ 108 (267)
T ss_pred eeeEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE-ECCEEcccccCChHHHhcceEEEec
Confidence 56899999999999 9999999999999999999999986 5789866 55555432111 1111223333333
Q ss_pred cccchhhhhhccCCCCCCchhhHHHHhcC--Cc-------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLVVSMT--TP-------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~--~p-------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
...+- . ..+.+.......... .. ..+++.++.+ ...+++.+..| |+||+||++||||+
T Consensus 109 ~~~~~-------~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L--S~G~~qrl~laral 178 (267)
T PRK14237 109 RPNPF-------A-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTL--SGGQQQRLCIARAI 178 (267)
T ss_pred CCccc-------c-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccC--CHHHHHHHHHHHHH
Confidence 22110 0 011000000000000 00 0112222211 01223334444 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++|||+ .++|....+.+.+.|+++. + +.+
T Consensus 179 ~~~p~lllLDEPt------------------------------------------~~LD~~~~~~l~~~l~~~~-~-~~t 214 (267)
T PRK14237 179 AVKPDILLMDEPA------------------------------------------SALDPISTMQLEETMFELK-K-NYT 214 (267)
T ss_pred hcCCCEEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHh-c-CCE
Confidence 9888777777753 4667777888899999884 3 789
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 215 iii~tH~ 221 (267)
T PRK14237 215 IIIVTHN 221 (267)
T ss_pred EEEEecC
Confidence 9999953
No 276
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.8e-18 Score=165.13 Aligned_cols=176 Identities=11% Similarity=-0.025 Sum_probs=105.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCcc---ccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYRE---DHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~---~~~~l~i~~l 74 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+..| +.|.+. +.+.++...... ....+++...
T Consensus 21 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q 96 (261)
T PRK14263 21 FMAVRDSHVPIRKN---EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVH-FLGQDVYGKGVDPVVVRRYIGMVFQ 96 (261)
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEE-ECCEeccccccchHhhhhceEEEec
Confidence 36899999999999 99999999999999999999999876 689876 565554321111 1223444332
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHH---HHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWA---SVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~---~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
........+..+......+... ..........+++.++.+. ..+++....| |+||+||++|||||..++..+
T Consensus 97 ~~~~~~~tv~enl~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L--S~G~~qrv~laral~~~p~ll 171 (261)
T PRK14263 97 QPNPFSMSIFDNVAFGLRLNRY---KGDLGDRVKHALQGAALWDEVKDKLKVSGLSL--SGGQQQRLCIARAIATEPEVL 171 (261)
T ss_pred CCccccccHHHHHHHHHhhcCc---hHHHHHHHHHHHHHcCCchhhhhhhhCCcccC--CHHHHHHHHHHHHHHcCCCEE
Confidence 2211110110000000000000 0000000112233322210 1112223344 999999999999999777777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|....+.+.+.|++++ + |.+++++||.
T Consensus 172 llDEP------------------------------------------tsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~ 207 (261)
T PRK14263 172 LLDEP------------------------------------------CSALDPIATRRVEELMVELK-K-DYTIALVTHN 207 (261)
T ss_pred EEeCC------------------------------------------CccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCC
Confidence 77765 34677778888999999985 3 7899999943
No 277
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9.2e-18 Score=160.62 Aligned_cols=171 Identities=13% Similarity=0.042 Sum_probs=105.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCC-ccccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEY-REDHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~-~~~~~~l~i~~l~g 76 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+..+ +.|.+. +.+.++.... .....+..+.++.+
T Consensus 19 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q 94 (253)
T PRK14261 19 KHALYDITISIPKN---RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL-YNGENIMDSGADVVALRRKIGMVFQ 94 (253)
T ss_pred eeeeeeeEEEECCC---cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE-ECCEEccccccchhhhhceEEEEec
Confidence 46899999999999 99999999999999999999998653 479866 5555553321 01111223444333
Q ss_pred ccc-c-hhhhhhccCCCCCCchhhHHHHhcCC-------chhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPA-H-SNLLRFALNQETLPHTMVMLVVSMTT-------PWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~-~-~~Ll~~~l~~~~~~~~~v~~~~d~~~-------p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
.+. | ..+....... ....+... ...+++.++.+ ...+++....| |+||+||++||||+
T Consensus 95 ~~~~~~~tv~eni~~~--------~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L--S~G~~qrv~laral 164 (253)
T PRK14261 95 RPNPFPKSIYENVAYG--------PRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSL--SGGQQQRLCIARTL 164 (253)
T ss_pred CCccCcccHHHHHHhh--------HHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhC--CHHHHHHHHHHHHH
Confidence 321 1 1110000000 00000000 01112222221 12234455555 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| ..++|.+..+.+.+.|+.++. +.+
T Consensus 165 ~~~p~lllLDEP------------------------------------------~~gLD~~~~~~l~~~l~~~~~--~~t 200 (253)
T PRK14261 165 AVNPEVILMDEP------------------------------------------CSALDPIATAKIEDLIEDLKK--EYT 200 (253)
T ss_pred hcCCCEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHhh--Cce
Confidence 977777777765 357777888899999999864 578
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 201 vii~sh~ 207 (253)
T PRK14261 201 VIIVTHN 207 (253)
T ss_pred EEEEEcC
Confidence 9999843
No 278
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.76 E-value=3.4e-18 Score=181.98 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=111.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.++ +++.++.+..... +..+++..++...+..
T Consensus 353 ~~il~~i~~~i~~G---~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAG---EKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL-LNGQPIADYSEAALRQAISVVSQRVHLFSA 428 (574)
T ss_pred CcceecceEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEhhhCCHHHHHhheeEEcccchhhcc
Confidence 46899999999999 99999999999999999999999999999977 7777776554333 2334444332211222
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHH------HHhh--hcCChhhHHHHHHHHHhhccccccc
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQD------HIDS--LNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~------~~~~--L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
++..+.. ......+..+ +.+++..+. .+.+++ .+.. ..||+|||||++||||+.+++..++
T Consensus 429 ti~~Ni~~~~~~~~~~~i---------~~al~~~~l-~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 429 TLRDNLLLAAPNASDEAL---------IEVLQQVGL-EKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred cHHHHhhcCCCccCHHHH---------HHHHHHcCC-HHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2211111 1001111111 122222222 122222 1111 1259999999999999998888777
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+||+++ ++|.+..+.|++.|++++ .|.+++.+||..
T Consensus 499 lDE~ts------------------------------------------~lD~~t~~~i~~~l~~~~--~~~tviiitHr~ 534 (574)
T PRK11160 499 LDEPTE------------------------------------------GLDAETERQILELLAEHA--QNKTVLMITHRL 534 (574)
T ss_pred EeCCcc------------------------------------------cCCHHHHHHHHHHHHHHc--CCCEEEEEecCh
Confidence 777643 566677778888888874 488999999664
No 279
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.76 E-value=2.5e-18 Score=187.27 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=94.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|.|+++|++|.++ +++.++.+..... +.++++..++......
T Consensus 494 ~~vL~~isl~i~~G---e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPG---EVVALVGPSGSGKSTVAALLQNLYQPTGGQVL-LDGVPLVQYDHHYLHRQVALVGQEPVLFSG 569 (711)
T ss_pred CccccCceEEEcCC---CEEEEECCCCCCHHHHHHHHHhccCCCCCEEE-ECCEEHHhcCHHHHHhhceEEecCcccccc
Confidence 46999999999999 99999999999999999999999999999987 7777776544332 3445555433222222
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHh-HHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHN-WASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~-w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
++..+.. ......+..+..++.......+++.+.. +...+.+.-. .||||||||++||||+.+++..+++||+++
T Consensus 570 TIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~--~LSGGQkQRlalARALl~~p~ILILDEpTS 646 (711)
T TIGR00958 570 SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS--QLSGGQKQRIAIARALVRKPRVLILDEATS 646 (711)
T ss_pred CHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC--cCCHHHHHHHHHHHHHhcCCCEEEEEcccc
Confidence 2322211 1111222222222222222222222210 0111111112 259999999999999999888888898765
No 280
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.3e-17 Score=159.35 Aligned_cols=170 Identities=11% Similarity=0.078 Sum_probs=104.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC---CCC--CCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI---DSP--EKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl---~~p--~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+ .+| +.|++. +.+.++...... ...+.++.++.+
T Consensus 16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~v~q 91 (250)
T PRK14245 16 FHALKGISMEIEEK---SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR-IDGRNIYDKGVQVDELRKNVGMVFQ 91 (250)
T ss_pred EeEEeeeeEEEeCC---CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEE-ECCEecccccccHHHHhhheEEEec
Confidence 35899999999999 99999999999999999999986 344 479866 555555321111 111223333333
Q ss_pred cccchhhhhhccCCCCCCchhhHHHHhcC---Cc-------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLVVSMT---TP-------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~---~p-------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
.+.+ ....+.+.. ....... .. +.+++.++.. ...+.+....| |+||+||++||||
T Consensus 92 ~~~~--------~~~tv~~nl-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~G~~qrv~lara 160 (250)
T PRK14245 92 RPNP--------FPKSIFENV-AYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFAL--SGGQQQRLCIARA 160 (250)
T ss_pred CCcc--------CcccHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccC--CHHHHHHHHHHHH
Confidence 2211 000111100 0001100 00 1122222210 01223334445 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++||| +.++|.+..+.+.+.|++++ + |.
T Consensus 161 l~~~p~lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~-~-~~ 196 (250)
T PRK14245 161 MAVSPSVLLMDEP------------------------------------------ASALDPISTAKVEELIHELK-K-DY 196 (250)
T ss_pred HhcCCCEEEEeCC------------------------------------------CccCCHHHHHHHHHHHHHHh-c-CC
Confidence 9987777777765 35677788899999999984 3 78
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 197 tiiivtH~ 204 (250)
T PRK14245 197 TIVIVTHN 204 (250)
T ss_pred eEEEEeCC
Confidence 99999943
No 281
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.5e-18 Score=161.46 Aligned_cols=171 Identities=12% Similarity=0.047 Sum_probs=104.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC--C---CCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS--P---EKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~--p---~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.. | +.|.+. +.+.++...... ...+..+.++.+
T Consensus 25 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~v~q 100 (259)
T PRK14274 25 HHALKNINLSIPEN---EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN-YNGSNILKGKVDLVELRKNIGMVFQ 100 (259)
T ss_pred eeeEEeeEEEEcCC---CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE-ECCEEccccccCHHHHhhceEEEec
Confidence 46899999999999 9999999999999999999999986 3 578866 666555321111 111223333333
Q ss_pred cccchhhhhhccCCCCCCchhhHHHHhcC--Cch-------hHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLVVSMT--TPW-------NIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~--~p~-------~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
++.+ ....+.+...+...... ... .+++.++.. ...++.....| |+||+||++|||++
T Consensus 101 ~~~~--------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~L--S~Gq~qrv~laral 170 (259)
T PRK14274 101 KGNP--------FPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSL--SGGQQQRLCIARAL 170 (259)
T ss_pred CCcc--------cccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccC--CHHHHHHHHHHHHH
Confidence 2211 00001110000000000 001 112222211 01223334444 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|.+....+.+.|+++. + +.+
T Consensus 171 ~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~-~-~~t 206 (259)
T PRK14274 171 ATNPDVLLMDEP------------------------------------------TSALDPVSTRKIEELILKLK-E-KYT 206 (259)
T ss_pred hcCCCEEEEcCC------------------------------------------cccCCHHHHHHHHHHHHHHh-c-CCE
Confidence 987777777765 34667777888889999885 3 789
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 207 iiivtH~ 213 (259)
T PRK14274 207 IVIVTHN 213 (259)
T ss_pred EEEEEcC
Confidence 9999943
No 282
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.3e-17 Score=149.65 Aligned_cols=160 Identities=15% Similarity=0.145 Sum_probs=106.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
.+|+|||++|..| +.++++||+|||||||++.++|+..|..|.+. .++..+.. .-...+++++....
T Consensus 19 ~~le~vsL~ia~g---e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~-l~~r~i~g----PgaergvVFQ~~~L----- 85 (259)
T COG4525 19 SALEDVSLTIASG---ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ-LNGRRIEG----PGAERGVVFQNEAL----- 85 (259)
T ss_pred hhhhccceeecCC---CEEEEEcCCCccHHHHHHHHhcCcCcccceEE-ECCEeccC----CCccceeEeccCcc-----
Confidence 3899999999999 99999999999999999999999999999965 55544432 22344666554321
Q ss_pred hhhccCCCCCCchhhHHHHhcC-------Cc------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 84 LRFALNQETLPHTMVMLVVSMT-------TP------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~d~~-------~p------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
++-..++.++.+. +. ..++..+.+ .+.-++++-+| |||||||+.||||+.-.|..
T Consensus 86 ---------lPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL-~~~~~~~i~qL--SGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 86 ---------LPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGL-EGAEHKYIWQL--SGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ---------chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCc-ccccccceEee--cchHHHHHHHHHHhhcCcce
Confidence 1111222221111 00 011111111 11113334444 99999999999999988888
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+.+|||.. .+|.--++.+|..|-.+...-|..+++++|
T Consensus 154 LlLDEPfg------------------------------------------AlDa~tRe~mQelLldlw~~tgk~~lliTH 191 (259)
T COG4525 154 LLLDEPFG------------------------------------------ALDALTREQMQELLLDLWQETGKQVLLITH 191 (259)
T ss_pred EeecCchh------------------------------------------hHHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 88888633 222234667788888888999999999884
No 283
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.76 E-value=2.8e-18 Score=182.68 Aligned_cols=180 Identities=16% Similarity=0.154 Sum_probs=111.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.+. +++.++....... +..+++..++....-.
T Consensus 353 ~~iL~~inl~i~~G---e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~-i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~ 428 (576)
T TIGR02204 353 QPALDGLNLTVRPG---ETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL-LDGVDLRQLDPAELRARMALVPQDPVLFAA 428 (576)
T ss_pred CccccceeEEecCC---CEEEEECCCCCCHHHHHHHHHhccCCCCCEEE-ECCEEHHhcCHHHHHHhceEEccCCccccc
Confidence 46899999999999 99999999999999999999999999999976 6666665543322 2344554333221222
Q ss_pred hhhhhccC-CCCCCchhhHHHHhcCCchhHHHHHHh-HHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFALN-QETLPHTMVMLVVSMTTPWNIIDELHN-WASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l~-~~~~~~~~v~~~~d~~~p~~~l~~l~~-w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
++.++... .....+..+...++......+++.+.. +...+.+.- ..||||||||++||||+.+++..+++|||++
T Consensus 429 Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g--~~LSgGq~Qrl~laRal~~~~~ililDEpts- 505 (576)
T TIGR02204 429 SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERG--VTLSGGQRQRIAIARAILKDAPILLLDEATS- 505 (576)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCC--CcCCHHHHHHHHHHHHHHhCCCeEEEeCccc-
Confidence 22211111 111111112222221111111221100 000111111 1259999999999999998888888887644
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
++|.+..+.|++.|+.++ .+.+++.+||..
T Consensus 506 -----------------------------------------~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~ 535 (576)
T TIGR02204 506 -----------------------------------------ALDAESEQLVQQALETLM--KGRTTLIIAHRL 535 (576)
T ss_pred -----------------------------------------ccCHHHHHHHHHHHHHHh--CCCEEEEEecch
Confidence 455555667888888774 378999999764
No 284
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.76 E-value=5.8e-18 Score=180.60 Aligned_cols=179 Identities=15% Similarity=0.109 Sum_probs=109.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|+|+++|++|.++ +++.++.+...+. +..+++..++......
T Consensus 348 ~~~l~~i~~~i~~G---~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ 423 (585)
T TIGR01192 348 SQGVFDVSFEAKAG---QTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL-IDGIDINTVTRESLRKSIATVFQDAGLFNR 423 (585)
T ss_pred CccccceeEEEcCC---CEEEEECCCCCCHHHHHHHHccCCCCCCCEEE-ECCEEhhhCCHHHHHhheEEEccCCccCcc
Confidence 46899999999999 99999999999999999999999999999976 6666665433222 2334443322211111
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.+.++.. ......+..+....+....+.++..+ +.+...+.+.... ||||||||++||||+..++..+++||++
T Consensus 424 ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~--LSgGq~qrl~lARall~~p~ililDEpt-- 499 (585)
T TIGR01192 424 SIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR--LSGGERQRLAIARAILKNAPILVLDEAT-- 499 (585)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCC--CCHHHHHHHHHHHHHhcCCCEEEEECCc--
Confidence 2211111 10011111111111111111111111 0000112222222 5999999999999999888888888764
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.++|.+..+.+++.|+++. .|.+++++||.
T Consensus 500 ----------------------------------------s~LD~~~~~~i~~~l~~~~--~~~tvI~isH~ 529 (585)
T TIGR01192 500 ----------------------------------------SALDVETEARVKNAIDALR--KNRTTFIIAHR 529 (585)
T ss_pred ----------------------------------------cCCCHHHHHHHHHHHHHHh--CCCEEEEEEcC
Confidence 3566677778888888763 48899999966
No 285
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.7e-18 Score=163.03 Aligned_cols=171 Identities=12% Similarity=0.051 Sum_probs=105.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCc-cccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYR-EDHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~-~~~~~l~i~~l~g 76 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+ |++|.+. +.+.++..... ....+..+.++.+
T Consensus 38 ~~il~~vs~~i~~G---e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~-i~g~~i~~~~~~~~~~~~~i~~v~q 113 (272)
T PRK14236 38 KQALFDISMRIPKN---RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIR-LDGQNIYDKKVDVAELRRRVGMVFQ 113 (272)
T ss_pred eeEeeeEEEEEcCC---CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEE-ECCEECcccccCHHHHhccEEEEec
Confidence 46899999999999 9999999999999999999999977 3789976 55555532111 1111223333333
Q ss_pred cccchhhhhhccCCCCCCchhhHHH--HhcCC-------chhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLV--VSMTT-------PWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~--~d~~~-------p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
...+ ....+.+...+.. ..+.. .+.+++.++.+ ...+++....| |+||+||++||||+
T Consensus 114 ~~~l--------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--S~Gq~qrv~laral 183 (272)
T PRK14236 114 RPNP--------FPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGL--SGGQQQRLVIARAI 183 (272)
T ss_pred CCcc--------CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccC--CHHHHHHHHHHHHH
Confidence 2211 0001101000000 00000 01112222221 11223334445 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++||| +.++|.+..+.+.+.|++++. +.+
T Consensus 184 ~~~p~lllLDEP------------------------------------------t~gLD~~~~~~l~~~L~~~~~--~~t 219 (272)
T PRK14236 184 AIEPEVLLLDEP------------------------------------------TSALDPISTLKIEELITELKS--KYT 219 (272)
T ss_pred HCCCCEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHHh--CCe
Confidence 987777777765 356777888899999999863 689
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 220 iiivtH~ 226 (272)
T PRK14236 220 IVIVTHN 226 (272)
T ss_pred EEEEeCC
Confidence 9999944
No 286
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.8e-17 Score=160.44 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=104.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCC--c-cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEY--R-EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~--~-~~~~~l~i~~l 74 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+ |+.|.+. +.+.++.... . .....+++.
T Consensus 37 ~~il~~vsl~i~~G---e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~v-- 110 (271)
T PRK14238 37 DHALKNINLDIHEN---EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKIL-YRDQNIFDKSYSVEELRTNVGMV-- 110 (271)
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEE-ECCEEcccccccHHHHhhhEEEE--
Confidence 46899999999999 9999999999999999999999986 6889976 5555543211 1 112234443
Q ss_pred cCcccchhhhhhccCCCCCCchhhH-HHH-hcCCch-------hHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVM-LVV-SMTTPW-------NIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~-~~~-d~~~p~-------~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LAr 142 (415)
.+.+.+ ......+...+ ... +..... .+++.+..| ...+++.+..| |+||+||++|||
T Consensus 111 ~q~~~~--------~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L--SgGe~qrv~lar 180 (271)
T PRK14238 111 FQKPNP--------FPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL--SGGQQQRLCIAR 180 (271)
T ss_pred ecCCcc--------ccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC--CHHHHHHHHHHH
Confidence 333211 00011110000 000 000000 111111111 11223344445 999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
++..++..+++||| ..++|.+....+.+.|+++.. +
T Consensus 181 aL~~~p~lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~--~ 216 (271)
T PRK14238 181 CLAIEPDVILMDEP------------------------------------------TSALDPISTLKVEELVQELKK--D 216 (271)
T ss_pred HHHcCCCEEEEeCC------------------------------------------CCcCCHHHHHHHHHHHHHHHc--C
Confidence 99987777777775 346777778888999998853 6
Q ss_pred CeEEEeccC
Q psy13975 223 AGLFYTSAK 231 (415)
Q Consensus 223 asli~tS~k 231 (415)
.+++++||.
T Consensus 217 ~tiiivsH~ 225 (271)
T PRK14238 217 YSIIIVTHN 225 (271)
T ss_pred CEEEEEEcC
Confidence 899999943
No 287
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=6.3e-18 Score=163.83 Aligned_cols=176 Identities=12% Similarity=0.022 Sum_probs=105.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCC-ccccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEY-REDHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~-~~~~~~l~i~~l~g 76 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+..+ +.|.+. +.+.++.... .....+..+.++.+
T Consensus 33 ~~~l~~vs~~i~~G---e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~l~~~~~~~~~~~~~i~~v~q 108 (274)
T PRK14265 33 FLALVDVHLKIPAK---KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL-YRDRNIYDSQINSVKLRRQVGMVFQ 108 (274)
T ss_pred eEEEeeeeeEEcCC---CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE-ECCEecccccchhHHHhhcEEEEcc
Confidence 35899999999999 99999999999999999999999753 578865 5555543211 11112233444444
Q ss_pred cccc--hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 77 EPAH--SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 77 ~~~~--~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
+..+ ..+.............. ...+ ......++.++.+ .+.+++.+..| |+||+||++||||+..++..+
T Consensus 109 ~~~l~~~tv~~nl~~~~~~~~~~--~~~~-~~~~~~l~~~~l~~~l~~~~~~~~~~L--SgGq~qrv~LAraL~~~p~ll 183 (274)
T PRK14265 109 RPNPFPKSIYENIAFAPRANGYK--GNLD-ELVEDSLRRAAIWEEVKDKLKEKGTAL--SGGQQQRLCIARAIAMKPDVL 183 (274)
T ss_pred CCccccccHHHHHHhHHHhcCch--HHHH-HHHHHHHHHcccchhhHHHhcCCcccC--CHHHHHHHHHHHHHhhCCCEE
Confidence 3211 01110000000000000 0000 0000112222221 01223334444 999999999999999877777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++||| +.++|.+..+.+.+.|++++. +.+++++||.
T Consensus 184 lLDEP------------------------------------------t~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~ 219 (274)
T PRK14265 184 LMDEP------------------------------------------CSALDPISTRQVEELCLELKE--QYTIIMVTHN 219 (274)
T ss_pred EEeCC------------------------------------------cccCCHHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 77775 346777888999999999863 6899999944
No 288
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.75 E-value=7.7e-18 Score=152.71 Aligned_cols=119 Identities=16% Similarity=0.022 Sum_probs=92.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+++++ |+|++| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+. .+++. .
T Consensus 13 ~~~l~~~-~~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~-----------~i~~~--~------- 67 (177)
T cd03222 13 FFLLVEL-GVVKEG---EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE-WDGI-----------TPVYK--P------- 67 (177)
T ss_pred EEEEccC-cEECCC---CEEEEECCCCChHHHHHHHHHcCCCCCCcEEE-ECCE-----------EEEEE--c-------
Confidence 4567774 899999 99999999999999999999999999999965 3321 12211 1
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLF 162 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~ 162 (415)
+. .. ||+||+||+++||++..++..+++|||
T Consensus 68 -------q~-~~-----------------------------------LSgGq~qrv~laral~~~p~lllLDEP------ 98 (177)
T cd03222 68 -------QY-ID-----------------------------------LSGGELQRVAIAAALLRNATFYLFDEP------ 98 (177)
T ss_pred -------cc-CC-----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECC------
Confidence 00 00 499999999999999977777777765
Q ss_pred cCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 163 YSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 163 ~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.+++++.+.|.+++++||.
T Consensus 99 ------------------------------------ts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 99 ------------------------------------SAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred ------------------------------------cccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 356777888899999999876655899999954
No 289
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-17 Score=153.14 Aligned_cols=178 Identities=17% Similarity=0.177 Sum_probs=118.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-c
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI--DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-A 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl--~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~ 79 (415)
++||++|||+|..| ++.+|+||||||||||...|+|. +++++|.++ |.+.++.+...+.+++.|++...|.| .
T Consensus 17 keILkgvnL~v~~G---EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~-~~GedI~~l~~~ERAr~GifLafQ~P~e 92 (251)
T COG0396 17 KEILKGVNLTVKEG---EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL-FDGEDILELSPDERARAGIFLAFQYPVE 92 (251)
T ss_pred hhhhcCcceeEcCC---cEEEEECCCCCCHHHHHHHHhCCCCceEecceEE-ECCcccccCCHhHHHhcCCEEeecCCcc
Confidence 48999999999999 99999999999999999999997 578999987 89999998888889999987655543 2
Q ss_pred chhh-----hhhccCCCCCCchhhHHHHhcC-CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 80 HSNL-----LRFALNQETLPHTMVMLVVSMT-TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 80 ~~~L-----l~~~l~~~~~~~~~v~~~~d~~-~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
+..+ +..+.+...-..- + ..++. .....++.++.-...+++.+. .++|||||+|.+|++.+..+|...++
T Consensus 93 i~GV~~~~fLr~a~n~~~~~~~--~-~~~~~~~~~e~~~~l~~~~~~l~R~vN-~GFSGGEkKR~EilQ~~~lePkl~IL 168 (251)
T COG0396 93 IPGVTNSDFLRAAMNARRGARG--I-LPEFIKELKEKAELLGLDEEFLERYVN-EGFSGGEKKRNEILQLLLLEPKLAIL 168 (251)
T ss_pred CCCeeHHHHHHHHHHhhhcccc--c-cHHHHHHHHHHHHHcCCCHHHhhcccC-CCcCcchHHHHHHHHHHhcCCCEEEe
Confidence 2111 1111110000000 0 00000 000111122111112222222 24599999999999999988888888
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||+ +.|+|-...+.|...+..+... |.+++.++|.
T Consensus 169 DE~------------------------------------------DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy 203 (251)
T COG0396 169 DEP------------------------------------------DSGLDIDALKIVAEGINALREE-GRGVLIITHY 203 (251)
T ss_pred cCC------------------------------------------CcCccHHHHHHHHHHHHHHhcC-CCeEEEEecH
Confidence 875 3466667788888888888655 7777777654
No 290
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=5.3e-18 Score=161.94 Aligned_cols=169 Identities=16% Similarity=0.170 Sum_probs=116.1
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-----cceEEEEEecCcccc
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-----HTRLGVWILDGEPAH 80 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-----~~~l~i~~l~g~~~~ 80 (415)
+.|+||+|++| ++++|.|=+|||||||++++.++.+|+.|+++ +.+.++....... +.+++++++.
T Consensus 44 v~~~sl~v~~G---eIfViMGLSGSGKSTLvR~~NrLiept~G~il-v~g~di~~~~~~~Lr~~Rr~~~sMVFQ~----- 114 (386)
T COG4175 44 VNDASLDVEEG---EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL-VDGKDIAKLSAAELRELRRKKISMVFQS----- 114 (386)
T ss_pred eccceeeecCC---eEEEEEecCCCCHHHHHHHHhccCCCCCceEE-ECCcchhcCCHHHHHHHHhhhhhhhhhh-----
Confidence 78999999999 99999999999999999999999999999987 7777765544332 1233333322
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcC-------------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMT-------------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~-------------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
|++ +++.+|..+..+. +...|++.+.+ ..+.++++.+| ||||||||.|||||...
T Consensus 115 -----FaL----lPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL-~~~~~~yp~eL--SGGMqQRVGLARAla~~ 182 (386)
T COG4175 115 -----FAL----LPHRTVLENVAFGLEVQGVPKAEREERALEALELVGL-EGYADKYPNEL--SGGMQQRVGLARALAND 182 (386)
T ss_pred -----hcc----ccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCc-hhhhhcCcccc--cchHHHHHHHHHHHccC
Confidence 111 2222232222111 01134444444 34567778887 99999999999999977
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
+..++.||+.|+ +++--+..+|..|.++-.++.-+++|
T Consensus 183 ~~IlLMDEaFSA------------------------------------------LDPLIR~~mQdeLl~Lq~~l~KTIvF 220 (386)
T COG4175 183 PDILLMDEAFSA------------------------------------------LDPLIRTEMQDELLELQAKLKKTIVF 220 (386)
T ss_pred CCEEEecCchhh------------------------------------------cChHHHHHHHHHHHHHHHHhCCeEEE
Confidence 776666776542 23333445566678888888999999
Q ss_pred eccCCcccHHHHHH
Q psy13975 228 TSAKEDKNCDLLYK 241 (415)
Q Consensus 228 tS~k~~~n~~~l~~ 241 (415)
+| +.+|+.++
T Consensus 221 it----HDLdEAlr 230 (386)
T COG4175 221 IT----HDLDEALR 230 (386)
T ss_pred Ee----cCHHHHHh
Confidence 99 55655554
No 291
>KOG0092|consensus
Probab=99.75 E-value=6e-18 Score=150.89 Aligned_cols=162 Identities=20% Similarity=0.293 Sum_probs=128.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-CCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-GID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|||+.|+|||||+-++. |-+ .|+-|-.+ ....+.. .+...++.||+++|++.|.+| .+.+|+
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF--~tktv~~--~~~~ikfeIWDTAGQERy~sl-----apMYyR 76 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAF--LTKTVTV--DDNTIKFEIWDTAGQERYHSL-----APMYYR 76 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccccccccccEE--EEEEEEe--CCcEEEEEEEEcCCccccccc-----ccceec
Confidence 589999999999999988875 543 34445433 3333322 334678899999999999999 889999
Q ss_pred chhh-HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTMV-MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~v-~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+... ++++|+++..+ |..++.|...+++... +
T Consensus 77 gA~AAivvYDit~~~S-F~~aK~WvkeL~~~~~---------------------------------------------~- 109 (200)
T KOG0092|consen 77 GANAAIVVYDITDEES-FEKAKNWVKELQRQAS---------------------------------------------P- 109 (200)
T ss_pred CCcEEEEEEecccHHH-HHHHHHHHHHHHhhCC---------------------------------------------C-
Confidence 9985 78899999888 7888899777766652 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPFR 253 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f~ 253 (415)
.+-|.+||||+|+.+. +.+..++ ...+|...|+.+++||+|++.|++.+|..|..+++...+.
T Consensus 110 ------~~vialvGNK~DL~~~----R~V~~~e-------a~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 110 ------NIVIALVGNKADLLER----REVEFEE-------AQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ------CeEEEEecchhhhhhc----ccccHHH-------HHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence 6778899999999862 4444444 7889999999999999999999999999999999987665
Q ss_pred C
Q psy13975 254 T 254 (415)
Q Consensus 254 ~ 254 (415)
.
T Consensus 173 ~ 173 (200)
T KOG0092|consen 173 E 173 (200)
T ss_pred c
Confidence 4
No 292
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=159.99 Aligned_cols=169 Identities=13% Similarity=0.099 Sum_probs=104.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC--C---CCcEEEEeceeecCCCCc---cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS--P---EKGLALEYAYINVSDEYR---EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~--p---~~G~il~~~~~~v~~~~~---~~~~~l~i~~l 74 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+ | ++|.+. +.+.++..... .....+++.
T Consensus 18 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~-- 91 (252)
T PRK14255 18 FEALKGIDLDFNQN---EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS-LRGQNIYAPNEDVVQLRKQVGMV-- 91 (252)
T ss_pred eeEEecceEEEcCC---CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEE-EcCEEcccccccHHHhcCeEEEE--
Confidence 36899999999999 9999999999999999999999864 4 489876 55555432111 112234443
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHHH--hcCCc-------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHH
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLVV--SMTTP-------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~~--d~~~p-------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LAr 142 (415)
.+.+.+ . . ..+.+...+... ..... ...++.+..+ ...++..+..| |+||+||++|||
T Consensus 92 ~q~~~~---~----~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L--S~Gq~qrv~lar 161 (252)
T PRK14255 92 FQQPNP---F----P-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSL--SGGQQQRVCIAR 161 (252)
T ss_pred ECCCcc---C----C-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccC--CHHHHHHHHHHH
Confidence 332211 0 0 011000000000 00010 0111222111 01223334444 999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
|+..++..+++||| +.++|.+..+.+.+.|++++. +
T Consensus 162 al~~~p~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~--~ 197 (252)
T PRK14255 162 VLAVKPDVILLDEP------------------------------------------TSALDPISSTQIENMLLELRD--Q 197 (252)
T ss_pred HHhcCCCEEEEcCC------------------------------------------CccCCHHHHHHHHHHHHHHHh--C
Confidence 99987777777775 346777888899999999854 5
Q ss_pred CeEEEeccC
Q psy13975 223 AGLFYTSAK 231 (415)
Q Consensus 223 asli~tS~k 231 (415)
.+++++||.
T Consensus 198 ~tii~vsH~ 206 (252)
T PRK14255 198 YTIILVTHS 206 (252)
T ss_pred CEEEEEECC
Confidence 789999954
No 293
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.75 E-value=2.2e-17 Score=144.81 Aligned_cols=114 Identities=19% Similarity=0.275 Sum_probs=90.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
..+|+++||++.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+. ..+++. .
T Consensus 13 ~~~l~~~~~~~~~G---e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~~~----------~~i~~~--~------- 69 (144)
T cd03221 13 KLLLKDISLTINPG---DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT-WGST----------VKIGYF--E------- 69 (144)
T ss_pred ceEEEeeEEEECCC---CEEEEECCCCCCHHHHHHHHcCCCCCCceEEE-ECCe----------EEEEEE--c-------
Confidence 36899999999999 99999999999999999999999999999964 3220 122221 1
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLF 162 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~ 162 (415)
+ +|+||+||++||||+..++..+++|||
T Consensus 70 -------~---------------------------------------lS~G~~~rv~laral~~~p~illlDEP------ 97 (144)
T cd03221 70 -------Q---------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP------ 97 (144)
T ss_pred -------c---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC------
Confidence 0 499999999999999987777777775
Q ss_pred cCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 163 YSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 163 ~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
..++|.+..+.+.+.++++ +.+++++||.
T Consensus 98 ------------------------------------~~~LD~~~~~~l~~~l~~~----~~til~~th~ 126 (144)
T cd03221 98 ------------------------------------TNHLDLESIEALEEALKEY----PGTVILVSHD 126 (144)
T ss_pred ------------------------------------ccCCCHHHHHHHHHHHHHc----CCEEEEEECC
Confidence 3466667777787777765 4689999854
No 294
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=7.1e-18 Score=162.07 Aligned_cols=170 Identities=12% Similarity=0.068 Sum_probs=103.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
..+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+| ++|.+. +.+.++...... ...+.++.++.+
T Consensus 20 ~~il~~isl~i~~G---e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q 95 (259)
T PRK14260 20 SKAIEGISMDIYRN---KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVD-FFGQNIYDPRININRLRRQIGMVFQ 95 (259)
T ss_pred eEeecceEEEEcCC---CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEE-ECCEeccccccchHhhhhheEEEec
Confidence 35899999999999 99999999999999999999999875 478865 555554321111 111223333333
Q ss_pred ccc-chhhhhhccCCCCCCchhhHHHHhc---CCc------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 77 EPA-HSNLLRFALNQETLPHTMVMLVVSM---TTP------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 77 ~~~-~~~Ll~~~l~~~~~~~~~v~~~~d~---~~p------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
.+. |. . ...+......... ... ..+++.++.| ...+++....| |+||+||++||||
T Consensus 96 ~~~l~~-~--------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L--S~G~~qrv~lara 164 (259)
T PRK14260 96 RPNPFP-M--------SIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGL--SGGQQQRLCIARA 164 (259)
T ss_pred ccccCC-c--------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccC--CHHHHHHHHHHHH
Confidence 221 10 1 1111000000000 000 0112222221 01222333444 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++||| +.++|....+.+.+.|++++. +.
T Consensus 165 l~~~p~lllLDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~--~~ 200 (259)
T PRK14260 165 LAIKPKVLLMDEP------------------------------------------CSALDPIATMKVEELIHSLRS--EL 200 (259)
T ss_pred HhcCCCEEEEcCC------------------------------------------CccCCHHHHHHHHHHHHHHhc--CC
Confidence 9977777777765 346777778889999999853 58
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 201 tiii~tH~ 208 (259)
T PRK14260 201 TIAIVTHN 208 (259)
T ss_pred EEEEEeCC
Confidence 99999944
No 295
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=1.8e-17 Score=176.26 Aligned_cols=151 Identities=18% Similarity=0.080 Sum_probs=109.1
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
.|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +. .++++. .+....
T Consensus 354 ~l~~~s~~i~~G---eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~-~~------------~~i~y~--~Q~~~~---- 411 (590)
T PRK13409 354 SLEVEGGEIYEG---EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD-PE------------LKISYK--PQYIKP---- 411 (590)
T ss_pred EEEecceEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-Ee------------eeEEEe--cccccC----
Confidence 489999999999 99999999999999999999999999999864 21 123332 222110
Q ss_pred hhccCCCCCCchhhHHHHh-----cCC---chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 85 RFALNQETLPHTMVMLVVS-----MTT---PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d-----~~~---p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
..+.++...+. ... ...+++.++.. ..+++.+..| |+||+||++||||+.+++..+++|||
T Consensus 412 --------~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~L--SGGe~QRvaiAraL~~~p~llLLDEP 480 (590)
T PRK13409 412 --------DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDL--SGGELQRVAIAACLSRDADLYLLDEP 480 (590)
T ss_pred --------CCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccC--CHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 01111111110 001 12345555553 5566777777 99999999999999977777777765
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+.++|.+....+.+.|++++.+.|.+++++||
T Consensus 481 ------------------------------------------t~~LD~~~~~~l~~~l~~l~~~~g~tviivsH 512 (590)
T PRK13409 481 ------------------------------------------SAHLDVEQRLAVAKAIRRIAEEREATALVVDH 512 (590)
T ss_pred ------------------------------------------ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 45777888999999999999888999999994
No 296
>KOG0055|consensus
Probab=99.74 E-value=5.9e-18 Score=185.96 Aligned_cols=177 Identities=15% Similarity=0.100 Sum_probs=117.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
..||+++||.|+.| +.++|||++||||||+++.|.++++|++|.++ .++.+++....+. +.+++++.+..-.+-.
T Consensus 366 v~Il~g~sl~i~~G---~~valVG~SGsGKST~i~LL~RfydP~~G~V~-idG~di~~~~~~~lr~~iglV~QePvlF~~ 441 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSG---QTVALVGPSGSGKSTLIQLLARFYDPTSGEVL-IDGEDIRNLNLKWLRSQIGLVSQEPVLFAT 441 (1228)
T ss_pred chhhCCeEEEeCCC---CEEEEECCCCCCHHHHHHHHHHhcCCCCceEE-EcCccchhcchHHHHhhcCeeeechhhhcc
Confidence 36899999999999 99999999999999999999999999999987 6677766544332 4566776554322222
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
.+.++.. .........+.....+.+.+.++..+. +-.+..+.. ..||||||||++||||+.+.|..++|||+++
T Consensus 442 tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp---~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTS 518 (1228)
T KOG0055|consen 442 TIRENIRYGKPDATREEIEEAAKAANAHDFILKLP---DGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATS 518 (1228)
T ss_pred cHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhH---HhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCccc
Confidence 2211111 111222222333333334333333331 111222221 1259999999999999999888888888755
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
.+|.+....+|+.|++.. .|-+.+.++|
T Consensus 519 ------------------------------------------aLD~~se~~Vq~ALd~~~--~grTTivVaH 546 (1228)
T KOG0055|consen 519 ------------------------------------------ALDAESERVVQEALDKAS--KGRTTIVVAH 546 (1228)
T ss_pred ------------------------------------------ccCHHHHHHHHHHHHHhh--cCCeEEEEee
Confidence 455677778888998874 5777777763
No 297
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=1.4e-17 Score=147.97 Aligned_cols=176 Identities=15% Similarity=0.107 Sum_probs=111.6
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-ccccceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-REDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-~~~~~~l~i~~l~g~~~~~~ 82 (415)
.+++.|||++++| ..++|+|.||||||||.++|.|+.+|++|+++ ++.....-.+ .-...++.+.+++....+..
T Consensus 27 ~AV~~vSFtL~~~---QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il-~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 27 EAVKPVSFTLREG---QTLAIIGENGSGKSTLAKMLAGMIEPTSGEIL-INDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hcccceEEEecCC---cEEEEEccCCCcHhHHHHHHhcccCCCCceEE-ECCccccccchHhhhhheeeeecCCccccCh
Confidence 5789999999999 99999999999999999999999999999987 4443332211 11234555666665444422
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCch---hHHHHHHh---HHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPW---NIIDELHN---WASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~---~~l~~l~~---w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
-+ .--.+-+.-.-.+-+|..+. .+++.+.. +-+..+-++..| +.||||||++|||+...|...+.||.
T Consensus 103 Rl----~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~l--a~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 103 RL----RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHML--APGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hh----hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhc--CchhHHHHHHHHHHhcCCcEEEehhh
Confidence 11 00111121222233333321 23333322 222233334444 99999999999999977766666664
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
. .+++-..+-.+...+-.+-.+.|.+++|++..
T Consensus 177 l------------------------------------------~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qh 209 (267)
T COG4167 177 L------------------------------------------ASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred h------------------------------------------hhccHHHHHHHHHHHHHHHHHhCceEEEEech
Confidence 1 12333445556666778888999999999843
No 298
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=4e-17 Score=157.48 Aligned_cols=178 Identities=11% Similarity=0.093 Sum_probs=118.1
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-C----CCcEEEEeceeecCCCCccc-----cceEEEEE
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-P----EKGLALEYAYINVSDEYRED-----HTRLGVWI 73 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-p----~~G~il~~~~~~v~~~~~~~-----~~~l~i~~ 73 (415)
.+++||||+|.+| ++++|||++||||||+.+.|+|+.+ + ..|+++ |.+.++.....+. ..++++.+
T Consensus 19 ~av~~vs~~i~~G---E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~-f~g~~l~~l~~~~~~~iRG~~I~mIf 94 (316)
T COG0444 19 KAVDGVSFELKKG---EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL-FDGKDLLSLSEKELRKIRGKEIAMIF 94 (316)
T ss_pred EEEeceeEEEcCC---cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEE-ECCcccccCCHHHHHhhcCceEEEEE
Confidence 5899999999999 9999999999999999999999987 3 346654 7776665544332 23455555
Q ss_pred ecCcccchhhhhhccCCCCCCchhhHHHHhcC-----C------chhHHHHHHhH--HHHHHHHHhhhcCChhhHHHHHH
Q psy13975 74 LDGEPAHSNLLRFALNQETLPHTMVMLVVSMT-----T------PWNIIDELHNW--ASVLQDHIDSLNIGAHDYQAGRC 140 (415)
Q Consensus 74 l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~-----~------p~~~l~~l~~w--~~~l~~~~~~L~lSgGekQRl~L 140 (415)
++....+..+ .--...+...+... + ...+++.+..- .+.++.+..+| ||||+|||.|
T Consensus 95 Q~p~~sLnPv--------~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhel--SGGMrQRV~I 164 (316)
T COG0444 95 QDPMTSLNPV--------MTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHEL--SGGMRQRVMI 164 (316)
T ss_pred cCchhhcCCh--------hhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCccc--CCcHHHHHHH
Confidence 5543333222 11111121111110 1 11223333221 13556666666 9999999999
Q ss_pred HHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH
Q psy13975 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK 220 (415)
Q Consensus 141 ArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~ 220 (415)
|.|+.-+|..++.||||+ .+|..-...|++.|+++..+
T Consensus 165 Amala~~P~LlIADEPTT------------------------------------------ALDvt~QaqIl~Ll~~l~~e 202 (316)
T COG0444 165 AMALALNPKLLIADEPTT------------------------------------------ALDVTVQAQILDLLKELQRE 202 (316)
T ss_pred HHHHhCCCCEEEeCCCcc------------------------------------------hhhHHHHHHHHHHHHHHHHh
Confidence 999997777777777643 44445567788899999999
Q ss_pred hCCeEEEeccCCcccHHHHHH
Q psy13975 221 FGAGLFYTSAKEDKNCDLLYK 241 (415)
Q Consensus 221 ~Gasli~tS~k~~~n~~~l~~ 241 (415)
+|.+++++| +++..+.+
T Consensus 203 ~~~aiilIT----HDl~vva~ 219 (316)
T COG0444 203 KGTALILIT----HDLGVVAE 219 (316)
T ss_pred cCCEEEEEe----CCHHHHHH
Confidence 999999999 56554444
No 299
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=164.02 Aligned_cols=179 Identities=10% Similarity=-0.001 Sum_probs=106.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCc-cccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYR-EDHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~-~~~~~l~i~~l~g 76 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+ |++|.+. +.+.++..... ....+..+.++.+
T Consensus 58 ~~iL~~is~~i~~G---e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~-i~g~~i~~~~~~~~~~~~~i~~v~q 133 (305)
T PRK14264 58 DHALKGVSMDIPEK---SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVE-LDGQDIYQDGVNLVELRKRVGMVFQ 133 (305)
T ss_pred eeeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-ECCEEcccccccHHHHhhceEEEcc
Confidence 46899999999999 9999999999999999999999975 5899866 55555432110 0111223333333
Q ss_pred ccc-c-hhhhhhccCC-CC--CCchhhH-HHHhcCC-------chhHHHHHHh--H-HHHHHHHHhhhcCChhhHHHHHH
Q psy13975 77 EPA-H-SNLLRFALNQ-ET--LPHTMVM-LVVSMTT-------PWNIIDELHN--W-ASVLQDHIDSLNIGAHDYQAGRC 140 (415)
Q Consensus 77 ~~~-~-~~Ll~~~l~~-~~--~~~~~v~-~~~d~~~-------p~~~l~~l~~--w-~~~l~~~~~~L~lSgGekQRl~L 140 (415)
... + ..+..+.... .. ....... ..+.... .+.+++.++. + ...+++.+..| |+||+||++|
T Consensus 134 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L--SgGq~qrv~L 211 (305)
T PRK14264 134 SPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGL--SGGQQQRLCI 211 (305)
T ss_pred CCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccC--CHHHHHHHHH
Confidence 321 1 1111111000 00 0000000 0000000 0111222211 0 01223334444 9999999999
Q ss_pred HHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH
Q psy13975 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK 220 (415)
Q Consensus 141 ArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~ 220 (415)
||||..++..+++||| ..++|....+.+.+.|++++.
T Consensus 212 AraL~~~p~lLLLDEP------------------------------------------tsgLD~~~~~~l~~~L~~~~~- 248 (305)
T PRK14264 212 ARCLAVDPEVILMDEP------------------------------------------ASALDPIATSKIEDLIEELAE- 248 (305)
T ss_pred HHHHhcCCCEEEEeCC------------------------------------------cccCCHHHHHHHHHHHHHHhc-
Confidence 9999988877777775 346777888899999999875
Q ss_pred hCCeEEEeccC
Q psy13975 221 FGAGLFYTSAK 231 (415)
Q Consensus 221 ~Gasli~tS~k 231 (415)
+.+++++||.
T Consensus 249 -~~tiiivtH~ 258 (305)
T PRK14264 249 -EYTVVVVTHN 258 (305)
T ss_pred -CCEEEEEEcC
Confidence 4789999943
No 300
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.4e-17 Score=163.66 Aligned_cols=171 Identities=9% Similarity=0.069 Sum_probs=106.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCcc-ccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYRE-DHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g 76 (415)
.++|+|+||+|.+| ++++|+|+||||||||+++|.|+.+ |+.|.+. +++.++...... ...+..+.++.+
T Consensus 95 ~~~L~~is~~I~~G---e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~-idG~~i~~~~~~~~~lr~~i~~v~q 170 (329)
T PRK14257 95 KHVLHDLNLDIKRN---KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY-FLGTNTRSKKISSLELRTRIGMVFQ 170 (329)
T ss_pred ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-ECCEEccccccchHhhhccEEEEec
Confidence 35899999999999 9999999999999999999999875 5689866 666665421111 112223444444
Q ss_pred cccchhhhhhccCCCCCCchhhHHH-Hh-cCC-------chhHHHHHHhHH---HHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 77 EPAHSNLLRFALNQETLPHTMVMLV-VS-MTT-------PWNIIDELHNWA---SVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 77 ~~~~~~Ll~~~l~~~~~~~~~v~~~-~d-~~~-------p~~~l~~l~~w~---~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
.+..-+. ++.+...+.. .+ ... ...+++.+..|. ..+.+....| |+|||||++||||+
T Consensus 171 ~~~~~~~--------ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~L--SgGqkqRl~LARAl 240 (329)
T PRK14257 171 KPTPFEM--------SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNAL--SGGQQQRLCIARAI 240 (329)
T ss_pred CCccCCC--------cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccC--CHHHHHHHHHHHHH
Confidence 3321000 1110000000 00 000 011222222221 1233444444 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++|||+ .++|.+..+.+++.|+.+.. +.+
T Consensus 241 ~~~p~IlLLDEPt------------------------------------------s~LD~~~~~~i~~~i~~l~~--~~T 276 (329)
T PRK14257 241 ALEPEVLLMDEPT------------------------------------------SALDPIATAKIEELILELKK--KYS 276 (329)
T ss_pred HhCCCEEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHhc--CCE
Confidence 9877777777763 45666677788899998853 689
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++.+||.
T Consensus 277 ii~iTH~ 283 (329)
T PRK14257 277 IIIVTHS 283 (329)
T ss_pred EEEEeCC
Confidence 9999854
No 301
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.1e-18 Score=171.40 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=106.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
.++|+|+||++.+| |+++|+|++|||||||+..+.|.++|++|++. +.+.++...+..+ +..+++..+..+.+-.
T Consensus 351 ~~~L~~~~l~l~~G---EkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~-~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~ 426 (573)
T COG4987 351 TKALKNFNLTLAQG---EKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT-LNGVEIASLDEQALRETISVLTQRVHLFSG 426 (573)
T ss_pred cchhhccceeecCC---CeEEEECCCCCCHHHHHHHHHhccCCCCCeee-ECCcChhhCChhhHHHHHhhhccchHHHHH
Confidence 36999999999999 99999999999999999999999999999976 6666665543321 2233333222222222
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhh---------cCChhhHHHHHHHHHhhcccccc
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSL---------NIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L---------~lSgGekQRl~LArAl~~~~~~~ 151 (415)
.+.++.. ......+.. .|.+++++++ .+.++...+.| .+||||+||++|||++.+..+..
T Consensus 427 Tlr~NL~lA~~~AsDEe---------l~~aL~qvgL-~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~ 496 (573)
T COG4987 427 TLRDNLRLANPDASDEE---------LWAALQQVGL-EKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496 (573)
T ss_pred HHHHHHhhcCCCCCHHH---------HHHHHHHcCH-HHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeE
Confidence 2322221 111122211 1233444433 23333322221 25999999999999999776666
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
++|||+ .++|.+--..|++.+..- -.|.+++++|
T Consensus 497 lLDEPT------------------------------------------egLD~~TE~~vL~ll~~~--~~~kTll~vT 530 (573)
T COG4987 497 LLDEPT------------------------------------------EGLDPITERQVLALLFEH--AEGKTLLMVT 530 (573)
T ss_pred EecCCc------------------------------------------ccCChhhHHHHHHHHHHH--hcCCeEEEEe
Confidence 777653 355555444555555444 3589999998
No 302
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.74 E-value=1.5e-17 Score=193.93 Aligned_cols=170 Identities=16% Similarity=0.071 Sum_probs=115.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|++| ++++|+|+||||||||+++|+|+..|++|.+. +.+.++.......+..+++..+.. ..+..
T Consensus 1952 ~~aL~~ISf~I~~G---Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~-i~G~~i~~~~~~~r~~IGy~pQ~~-~L~~~ 2026 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPG---ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT-VAGKSILTNISDVHQNMGYCPQFD-AIDDL 2026 (2272)
T ss_pred ceEEEeeEEEEcCC---cEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-ECCEECcchHHHHhhhEEEEeccc-cCCCC
Confidence 46999999999999 99999999999999999999999999999977 556665432122233455553321 11111
Q ss_pred hhhhccCCCCCCchhhHHH-H-hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLV-V-SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~-~-d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
+ ...+...+.. + .+.. ...+++.++. .+..++.+..| |+|||||+.+|+|+..+|..+++|
T Consensus 2027 L--------Tv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL-~~~~dk~~~~L--SGGqKqRLslA~ALi~~P~VLLLD 2095 (2272)
T TIGR01257 2027 L--------TGREHLYLYARLRGVPAEEIEKVANWSIQSLGL-SLYADRLAGTY--SGGNKRKLSTAIALIGCPPLVLLD 2095 (2272)
T ss_pred C--------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HHHhcCChhhC--CHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1 1111110000 0 0000 0123444444 24455666666 999999999999999777777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|...++.+.+.|++++.+ |.++++|||.
T Consensus 2096 EP------------------------------------------TsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~ 2129 (2272)
T TIGR01257 2096 EP------------------------------------------TTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHS 2129 (2272)
T ss_pred CC------------------------------------------CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 65 4578888999999999999765 9999999954
No 303
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.74 E-value=5.3e-18 Score=195.86 Aligned_cols=181 Identities=13% Similarity=0.103 Sum_probs=114.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-------------------------------------
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP------------------------------------- 45 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p------------------------------------- 45 (415)
.+||+|+||+|++| ++++|||++|||||||+++|.|+++|
T Consensus 1181 ~~vL~~lsl~i~~G---~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSK---KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNE 1257 (1466)
T ss_pred CccccCeeEEEcCC---CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccc
Confidence 36999999999999 99999999999999999999999998
Q ss_pred -----------------CCcEEEEeceeecCCCCccc-cceEEEEEecCcccchhhhhhcc-CCCCCCchhhHHHHhcCC
Q psy13975 46 -----------------EKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHSNLLRFAL-NQETLPHTMVMLVVSMTT 106 (415)
Q Consensus 46 -----------------~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~~Ll~~~l-~~~~~~~~~v~~~~d~~~ 106 (415)
++|.++ +++.++.+..... +..++++.++...+...+..+.. ......+..+..+.....
T Consensus 1258 ~~~~~~~~~~~~~~~~~~~G~I~-idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~ 1336 (1466)
T PTZ00265 1258 FSLTKEGGSGEDSTVFKNSGKIL-LDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAA 1336 (1466)
T ss_pred cccccccccccccccCCCCCeEE-ECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 578876 7777776654333 34445443332222222322111 111122222333333333
Q ss_pred chhHHHHHHh-HHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEE
Q psy13975 107 PWNIIDELHN-WASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVV 185 (415)
Q Consensus 107 p~~~l~~l~~-w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiiv 185 (415)
.+.++..+.. +...+.+.-. .||||||||++||||+.++|..+++||++|
T Consensus 1337 l~~fI~~LP~GydT~VGe~G~--~LSGGQkQRIaIARALlr~p~ILLLDEaTS--------------------------- 1387 (1466)
T PTZ00265 1337 IDEFIESLPNKYDTNVGPYGK--SLSGGQKQRIAIARALLREPKILLLDEATS--------------------------- 1387 (1466)
T ss_pred CHHHHHhCccccCCccCCCCC--cCCHHHHHHHHHHHHHhcCCCEEEEeCccc---------------------------
Confidence 3333333311 1111111112 259999999999999999999889998765
Q ss_pred EEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 186 VVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 186 V~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.+|.+--..|++.|+.+....|.++|.++|+
T Consensus 1388 ---------------aLD~~sE~~I~~~L~~~~~~~~~TvIiIaHR 1418 (1466)
T PTZ00265 1388 ---------------SLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418 (1466)
T ss_pred ---------------ccCHHHHHHHHHHHHHHhccCCCEEEEEech
Confidence 3344445567778887743357899998855
No 304
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.74 E-value=2.4e-17 Score=160.26 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=43.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+.
T Consensus 50 ~~vL~~vs~~i~~G---e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~ 95 (282)
T cd03291 50 APVLKNINLKIEKG---EMLAITGSTGSGKTSLLMLILGELEPSEGKIK 95 (282)
T ss_pred ccceeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 46899999999999 99999999999999999999999999999965
No 305
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.5e-17 Score=158.15 Aligned_cols=170 Identities=11% Similarity=0.077 Sum_probs=103.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEece------eecCCCCccccceEEEEEecC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAY------INVSDEYREDHTRLGVWILDG 76 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~------~~v~~~~~~~~~~l~i~~l~g 76 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+..|+.|.+. +.+ .++..... ...+..+.++.+
T Consensus 23 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~-~~G~~~~~g~~~~~~~~-~~~~~~i~~~~q 97 (257)
T PRK14246 23 KAILKDITIKIPNN---SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIK-VDGKVLYFGKDIFQIDA-IKLRKEVGMVFQ 97 (257)
T ss_pred ceeEeceEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCcCcee-EcCEEEECCcccccCCH-HHHhcceEEEcc
Confidence 46899999999999 99999999999999999999999999987653 221 12111111 111222333333
Q ss_pred cc-cchhhhhhccCCCCCCchhhHHHH--hcCC-------chhHHHHHHhHH---HHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 77 EP-AHSNLLRFALNQETLPHTMVMLVV--SMTT-------PWNIIDELHNWA---SVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 77 ~~-~~~~Ll~~~l~~~~~~~~~v~~~~--d~~~-------p~~~l~~l~~w~---~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
.+ .+..+ .+.+...+... .... ...+++.++.+. ..+++....| |+||+||++||||
T Consensus 98 ~~~~~~~~--------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L--S~G~~qrl~lara 167 (257)
T PRK14246 98 QPNPFPHL--------SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQL--SGGQQQRLTIARA 167 (257)
T ss_pred CCccCCCC--------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccC--CHHHHHHHHHHHH
Confidence 22 11110 00000000000 0000 011222222210 1223334444 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..+|..+++||| +.++|....+.+.+.|++++. +.
T Consensus 168 l~~~P~llllDEP------------------------------------------t~~LD~~~~~~l~~~l~~~~~--~~ 203 (257)
T PRK14246 168 LALKPKVLLMDEP------------------------------------------TSMIDIVNSQAIEKLITELKN--EI 203 (257)
T ss_pred HHcCCCEEEEcCC------------------------------------------CccCCHHHHHHHHHHHHHHhc--Cc
Confidence 9987777777775 346677778899999998863 68
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 204 tiilvsh~ 211 (257)
T PRK14246 204 AIVIVSHN 211 (257)
T ss_pred EEEEEECC
Confidence 99999955
No 306
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.4e-17 Score=159.02 Aligned_cols=169 Identities=12% Similarity=0.107 Sum_probs=104.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCC--c-cccceEEEEEe
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEY--R-EDHTRLGVWIL 74 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~--~-~~~~~l~i~~l 74 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.. |++|.+. +.+.++.... . ....++++.
T Consensus 16 ~~~l~~~s~~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~~i~~~~~~~~~~~~~i~~~-- 89 (250)
T PRK14266 16 AHILKNVNLDIPKN---SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY-LDGVDIYDPAVDVVELRKKVGMV-- 89 (250)
T ss_pred eEEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE-ECCEEcccccccHHHHhhheEEE--
Confidence 36899999999999 9999999999999999999999854 3789876 5555553211 1 112234443
Q ss_pred cCccc-ch-hhhhhccCCCCCCchhhHHHHhcCCc-------hhHHHHHHhH---HHHHHHHHhhhcCChhhHHHHHHHH
Q psy13975 75 DGEPA-HS-NLLRFALNQETLPHTMVMLVVSMTTP-------WNIIDELHNW---ASVLQDHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 75 ~g~~~-~~-~Ll~~~l~~~~~~~~~v~~~~d~~~p-------~~~l~~l~~w---~~~l~~~~~~L~lSgGekQRl~LAr 142 (415)
.+++. |. ....+.... ......... ..+++.++.+ ...+++....| |+||+||++|||
T Consensus 90 ~q~~~~~~~t~~~nl~~~--------~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L--S~Gq~qrv~lar 159 (250)
T PRK14266 90 FQKPNPFPKSIFDNVAYG--------LRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGL--SGGQQQRLCIAR 159 (250)
T ss_pred ecCCccCcchHHHHHHhH--------HhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccC--CHHHHHHHHHHH
Confidence 33221 11 110000000 000000000 0112222221 01123334444 999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
|+..++..+++|||+ .++|......+.+.|++++ + |
T Consensus 160 al~~~p~llllDEP~------------------------------------------~gLD~~~~~~l~~~l~~~~-~-~ 195 (250)
T PRK14266 160 TIAVSPEVILMDEPC------------------------------------------SALDPISTTKIEDLIHKLK-E-D 195 (250)
T ss_pred HHHcCCCEEEEcCCC------------------------------------------ccCCHHHHHHHHHHHHHHh-c-C
Confidence 999888777777753 4666677888899999985 3 7
Q ss_pred CeEEEeccC
Q psy13975 223 AGLFYTSAK 231 (415)
Q Consensus 223 asli~tS~k 231 (415)
.+++++||.
T Consensus 196 ~tiii~sh~ 204 (250)
T PRK14266 196 YTIVIVTHN 204 (250)
T ss_pred CeEEEEECC
Confidence 899999954
No 307
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.9e-17 Score=155.75 Aligned_cols=169 Identities=18% Similarity=0.165 Sum_probs=118.4
Q ss_pred eEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-----ccccceEEEEEecCcccchh
Q psy13975 8 VFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-----REDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 8 ~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-----~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+++.. .+.+|.|++|||||||+++|+|+.+|+.|.+. .++....+.. ...+.+++|++++-..
T Consensus 16 ~a~~~~p~~---GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~-lngr~L~Ds~k~i~lp~~~RriGYVFQDARL---- 87 (352)
T COG4148 16 DANFTLPAR---GITALFGPSGSGKTSLINMIAGLTRPDEGRIE-LNGRVLVDAEKGIFLPPEKRRIGYVFQDARL---- 87 (352)
T ss_pred EEeccCCCC---ceEEEecCCCCChhhHHHHHhccCCccccEEE-ECCEEeecccCCcccChhhheeeeEeecccc----
Confidence 567788874 59999999999999999999999999999965 4443332222 1234678888776422
Q ss_pred hhhhccCCCCCCchhhHHHHhcC-------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT-------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~-------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
+++.+|.-++.+. .-..+.+.+.. ...++++...| ||||||||+|+|||...|..++.||
T Consensus 88 ----------FpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI-~hLL~R~P~~L--SGGEkQRVAIGRALLt~P~LLLmDE 154 (352)
T COG4148 88 ----------FPHYTVRGNLRYGMWKSMRAQFDQLVALLGI-EHLLDRYPGTL--SGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred ----------ccceEEecchhhhhcccchHhHHHHHHHhCc-HHHHhhCCCcc--CcchhhHHHHHHHHhcCCCeeeecC
Confidence 2222221111110 11133444455 46778888887 9999999999999997777777777
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCccc
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKN 235 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n 235 (415)
|.+ .+|...+.-|+.+|.++..+....++|+| +.
T Consensus 155 PLa------------------------------------------SLD~~RK~EilpylERL~~e~~IPIlYVS----HS 188 (352)
T COG4148 155 PLA------------------------------------------SLDLPRKREILPYLERLRDEINIPILYVS----HS 188 (352)
T ss_pred chh------------------------------------------hcccchhhHHHHHHHHHHHhcCCCEEEEe----cC
Confidence 533 34556677889999999999999999999 56
Q ss_pred HHHHHHHH
Q psy13975 236 CDLLYKYL 243 (415)
Q Consensus 236 ~~~l~~~l 243 (415)
++++.+..
T Consensus 189 ~~Ev~RLA 196 (352)
T COG4148 189 LDEVLRLA 196 (352)
T ss_pred HHHHHhhh
Confidence 66666644
No 308
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=2.4e-17 Score=170.30 Aligned_cols=163 Identities=14% Similarity=0.080 Sum_probs=102.8
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEE--EecCcccch
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVW--ILDGEPAHS 81 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~--~l~g~~~~~ 81 (415)
.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.+. .+.+. .........
T Consensus 38 ~IL~nVSfsI~~G---EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~-I~G~~~---------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 38 YALNNISFEVPEG---EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD-IKGSAA---------LIAISSGLNGQLTGIE 104 (549)
T ss_pred eEEeeeEEEEeCC---CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEE-ECCEee---------eEEeccccCCCCcHHH
Confidence 5899999999999 99999999999999999999999999999965 333210 01110 000000001
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhcc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYL 161 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~ 161 (415)
++.-..... .+...... .....+++.++. ...+++.+..| |+||+||++||||+..++..+++|||+
T Consensus 105 nL~l~~~~~-~~~~~e~~-----e~i~elLe~lgL-~~~ld~~~~~L--SGGQrQRVaLArAL~~~P~LLLLDEPT---- 171 (549)
T PRK13545 105 NIELKGLMM-GLTKEKIK-----EIIPEIIEFADI-GKFIYQPVKTY--SSGMKSRLGFAISVHINPDILVIDEAL---- 171 (549)
T ss_pred HHHhhhhhc-CCCHHHHH-----HHHHHHHHHcCC-hhHhhCCcccC--CHHHHHHHHHHHHHHhCCCEEEEECCc----
Confidence 110000000 00000000 000112333333 13445555656 999999999999999877777777753
Q ss_pred ccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 162 FYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 162 ~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.++|....+.+.+.|+.++ +.|.+++++||.
T Consensus 172 --------------------------------------sgLD~~sr~~LlelL~el~-~~G~TIIIVSHd 202 (549)
T PRK13545 172 --------------------------------------SVGDQTFTKKCLDKMNEFK-EQGKTIFFISHS 202 (549)
T ss_pred --------------------------------------ccCCHHHHHHHHHHHHHHH-hCCCEEEEEECC
Confidence 4666777888888899886 458999999943
No 309
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.2e-17 Score=171.54 Aligned_cols=171 Identities=15% Similarity=0.150 Sum_probs=111.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCccc--c
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA--H 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~--~ 80 (415)
++++.|+||++++| ++++|+|+||||||||++.|.|+.+|+.|++. +++.+..+...+.. +-++..++++++ .
T Consensus 334 ~~~l~~l~~t~~~g---~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~-vng~~l~~l~~~~~-~k~i~~v~Q~p~lf~ 408 (559)
T COG4988 334 KPALSDLNLTIKAG---QLTALVGASGAGKSTLLNLLLGFLAPTQGEIR-VNGIDLRDLSPEAW-RKQISWVSQNPYLFA 408 (559)
T ss_pred CcccCCceeEecCC---cEEEEECCCCCCHHHHHHHHhCcCCCCCceEE-ECCccccccCHHHH-HhHeeeeCCCCcccc
Confidence 37899999999999 99999999999999999999999999999966 77777666544332 223333444442 1
Q ss_pred hhhhhhc-cCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHH------HHhh--hcCChhhHHHHHHHHHhhcccccc
Q psy13975 81 SNLLRFA-LNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQD------HIDS--LNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 81 ~~Ll~~~-l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~------~~~~--L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
.++-.+. +......+..+. .+++....| +.++. .+.. -+||+||+||+++|||+..++...
T Consensus 409 gTireNi~l~~~~~s~e~i~---------~al~~a~l~-~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 409 GTIRENILLARPDASDEEII---------AALDQAGLL-EFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred ccHHHHhhccCCcCCHHHHH---------HHHHHhcHH-HhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 2221111 111111121122 233333332 22322 2222 236999999999999999777777
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++|||++ .+|-|--..|++.|.+++. +.++++.||+
T Consensus 479 llDEpTA------------------------------------------~LD~etE~~i~~~l~~l~~--~ktvl~itHr 514 (559)
T COG4988 479 LLDEPTA------------------------------------------HLDAETEQIILQALQELAK--QKTVLVITHR 514 (559)
T ss_pred EecCCcc------------------------------------------CCCHhHHHHHHHHHHHHHh--CCeEEEEEcC
Confidence 7777654 4555556678888888865 5899999965
Q ss_pred C
Q psy13975 232 E 232 (415)
Q Consensus 232 ~ 232 (415)
.
T Consensus 515 l 515 (559)
T COG4988 515 L 515 (559)
T ss_pred h
Confidence 3
No 310
>KOG0080|consensus
Probab=99.74 E-value=6.6e-18 Score=145.99 Aligned_cols=163 Identities=19% Similarity=0.244 Sum_probs=128.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-CCCCCC--cEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-IDSPEK--GLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l~~p~~--G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|||++|+|||+||.++.. ..++.. ..+.+|....+. ....+.++.+|+++|++.|+.| ++.+|+..
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~--vdg~~~KlaiWDTAGqErFRtL-----TpSyyRga 84 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQ--VDGKRLKLAIWDTAGQERFRTL-----TPSYYRGA 84 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEE--EcCceEEEEEEeccchHhhhcc-----CHhHhccC
Confidence 4789999999999999999873 333322 233433322221 1345688999999999999999 99999999
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+...+ +..|+.|...++.+...
T Consensus 85 qGiIlVYDVT~Rdt-f~kLd~W~~Eld~Ystn------------------------------------------------ 115 (209)
T KOG0080|consen 85 QGIILVYDVTSRDT-FVKLDIWLKELDLYSTN------------------------------------------------ 115 (209)
T ss_pred ceeEEEEEccchhh-HHhHHHHHHHHHhhcCC------------------------------------------------
Confidence 8 577899998877 66679997777666532
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPF 252 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f 252 (415)
-.+-.++|+||.|. |.++.++.|+ .+.||.+|++-++++|||+..+++..|+.++..+...|.
T Consensus 116 ---~diikmlVgNKiDk----es~R~V~reE-------G~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 116 ---PDIIKMLVGNKIDK----ESERVVDREE-------GLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETPS 178 (209)
T ss_pred ---ccHhHhhhcccccc----hhcccccHHH-------HHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCcc
Confidence 16677899999996 5567787777 799999999999999999999999999999999988764
No 311
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.74 E-value=3.2e-17 Score=153.14 Aligned_cols=126 Identities=17% Similarity=0.088 Sum_probs=77.0
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
.+|+||||+|++| ++++|+|+||||||||+++|+|+.+|++|.+..+.+..+ .++. ....+..+
T Consensus 1 ~vl~~vs~~i~~G---e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~---------~~~~----~~~l~~~l 64 (213)
T PRK15177 1 VVLDKTDFVMGYH---EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL---------PLGA----NSFILPGL 64 (213)
T ss_pred CeeeeeeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee---------cccc----ccccCCcC
Confidence 4799999999999 999999999999999999999999999999642222110 0000 00000000
Q ss_pred hhhccCCCCCCchhhHHH--HhcCCchhHHH---HHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 84 LRFALNQETLPHTMVMLV--VSMTTPWNIID---ELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~--~d~~~p~~~l~---~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
...+...+.. ..+. .....+ .+..+....+..+..| |+|||||++||||+..++..+++|||
T Consensus 65 --------tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l--S~G~~qrv~la~al~~~p~llllDEP 131 (213)
T PRK15177 65 --------TGEENARMMASLYGLD-GDEFSHFCYQLTQLEQCYTDRVSEY--SVTMKTHLAFAINLLLPCRLYIADGK 131 (213)
T ss_pred --------cHHHHHHHHHHHcCCC-HHHHHHHHHHHhChhHHhhchHhhc--CHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 0011000000 0110 111111 1111123345566666 99999999999999988887777876
No 312
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.74 E-value=1.4e-18 Score=150.25 Aligned_cols=131 Identities=24% Similarity=0.217 Sum_probs=86.3
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccchhhh
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~~~Ll 84 (415)
|+||||+|.+| ++++|+|+||||||||+++|+|..+|+.|.+. +.+.++...... ....++++... ..+
T Consensus 1 L~~v~~~i~~g---~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~-~~~~~~~~~~~~~~~~~i~~~~~~--~~~---- 70 (137)
T PF00005_consen 1 LKNVSLEIKPG---EIVAIVGPNGSGKSTLLKALAGLLPPDSGSIL-INGKDISDIDIEELRRRIGYVPQD--PQL---- 70 (137)
T ss_dssp EEEEEEEEETT---SEEEEEESTTSSHHHHHHHHTTSSHESEEEEE-ETTEEGTTSHHHHHHHTEEEEESS--HCH----
T ss_pred CCceEEEEcCC---CEEEEEccCCCccccceeeecccccccccccc-cccccccccccccccccccccccc--ccc----
Confidence 78999999999 99999999999999999999999999999976 666666552211 23344444222 111
Q ss_pred hhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHH----hhhcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 85 RFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHI----DSLNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~----~~L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
+....+.....-.+.+.+++.+... ......+ ..| |+|||||++||||+..++..+++|||+
T Consensus 71 --------~~~~tv~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~L--S~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 71 --------FPGLTVRENESDERIEEVLKKLGLE-DLLDRKIGQRASSL--SGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp --------HTTSBHHHHHHHHHHHHHHHHTTHG-GGTGSBGTSCGGGS--CHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred --------ccccccccccccccccccccccccc-cccccccccccchh--hHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1111111111111122334444331 2222333 555 999999999999999999999999974
No 313
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.73 E-value=1.4e-17 Score=176.36 Aligned_cols=169 Identities=20% Similarity=0.136 Sum_probs=110.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcc-cc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEP-AH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~-~~ 80 (415)
.++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.+. +++.++.+..... +.++++ +.+++ .|
T Consensus 336 ~~~l~~i~~~i~~G---~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~--v~q~~~lf 409 (547)
T PRK10522 336 GFSVGPINLTIKRG---ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL-LDGKPVTAEQPEDYRKLFSA--VFTDFHLF 409 (547)
T ss_pred CeEEecceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEECCCCCHHHHhhheEE--EecChhHH
Confidence 35899999999999 99999999999999999999999999999977 6777765543322 233444 44433 22
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHH---HHHhhhcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQ---DHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~---~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
...+ .. +.... +-...+.+++.+... ..+. .......||||||||++||||+.+++..+++||++
T Consensus 410 ~~ti----~~-n~~~~------~~~~~~~~~~~~~l~-~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 410 DQLL----GP-EGKPA------NPALVEKWLERLKMA-HKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred HHhh----cc-ccCch------HHHHHHHHHHHcCCc-hhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 2211 11 10000 000111223333221 1111 11111246999999999999999888888888764
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+ ++|.+..+.|.+.+++.+...|.+++++||.
T Consensus 478 s------------------------------------------~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~ 509 (547)
T PRK10522 478 A------------------------------------------DQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509 (547)
T ss_pred C------------------------------------------CCCHHHHHHHHHHHHHHHHhCCCEEEEEEec
Confidence 4 5556666777777776655568999999976
No 314
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.73 E-value=2.2e-17 Score=159.16 Aligned_cols=158 Identities=18% Similarity=0.078 Sum_probs=100.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.+. ..++... ..+.
T Consensus 37 ~~il~~is~~i~~G---e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~-~~g~------------~~~~~~~--~~~~- 97 (264)
T PRK13546 37 FFALDDISLKAYEG---DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD-RNGE------------VSVIAIS--AGLS- 97 (264)
T ss_pred eEEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCcCCCceEEE-ECCE------------EeEEecc--cCCC-
Confidence 46899999999999 99999999999999999999999999999865 3221 1111110 0000
Q ss_pred hhhhccCCCCCCchhhHHHHhcC-Cchh-------HHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT-TPWN-------IIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~-~p~~-------~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
....+.+.......... .... +++.+.. ...++..+..| |+||+||++||||+..++..+++|
T Consensus 98 ------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~Gq~qrv~Laral~~~p~iLlLD 168 (264)
T PRK13546 98 ------GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSEL-GEFIYQPVKKY--SSGMRAKLGFSINITVNPDILVID 168 (264)
T ss_pred ------CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCCcccC--CHHHHHHHHHHHHHhhCCCEEEEe
Confidence 00000000000000000 0111 1111111 12334445555 999999999999999877777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||+ .++|.+..+.+.+.|+.++ +.|.+++++||.
T Consensus 169 EPt------------------------------------------~gLD~~~~~~l~~~L~~~~-~~g~tiIiisH~ 202 (264)
T PRK13546 169 EAL------------------------------------------SVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHN 202 (264)
T ss_pred Ccc------------------------------------------ccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCC
Confidence 753 4666677888888898885 469999999954
No 315
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.73 E-value=1.1e-17 Score=177.76 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=95.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||++++| ++++|+|++|||||||++.|.|+++|++|.++ +++.++.+...+. +.++++..++...+..
T Consensus 342 ~~vl~~is~~i~~G---e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~-idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~ 417 (567)
T COG1132 342 KPVLKDISFSIEPG---EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL-IDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417 (567)
T ss_pred CccccCceEEEcCC---CEEEEECCCCCCHHHHHHHHhccCCCCCCeEE-ECCEehhhcCHHHHHHhccEEcccceeecc
Confidence 57999999999999 99999999999999999999999999999988 4778887665443 4566655433222222
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
.+..+.. ......+..+...........++..+. +-.+..+.+ .+||||||||++||||+..+++.+++||+++
T Consensus 418 TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp---~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 418 TIRENIALGRPDATDEEIEEALKLANAHEFIANLP---DGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc---ccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 2221111 111122222222222222222222220 011222221 2359999999999999998888888888755
No 316
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.73 E-value=1.3e-17 Score=176.84 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=108.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcc-cch
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEP-AHS 81 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~-~~~ 81 (415)
++|+|+||+|++| ++++|+|+||||||||++.|+|+++|++|.++ +++.++.+..... +..+++. .+++ .|.
T Consensus 356 ~~l~~vs~~i~~G---~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~-~~g~~i~~~~~~~~~~~i~~v--~q~~~lf~ 429 (555)
T TIGR01194 356 FALGPIDLRIAQG---DIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL-LDGAAVSADSRDDYRDLFSAI--FADFHLFD 429 (555)
T ss_pred ceeccceEEEcCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCHHHHHhhCcEE--ccChhhhh
Confidence 5899999999999 99999999999999999999999999999977 6777765543322 2334443 3332 122
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh----hcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS----LNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~----L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
..+ ..+..++. +..+.+.+++.++.+ +.++...+. -.||||||||++||||+..++..+++||++
T Consensus 430 ~ti----~~n~~~~~------~~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~t 498 (555)
T TIGR01194 430 DLI----GPDEGEHA------SLDNAQQYLQRLEIA-DKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWA 498 (555)
T ss_pred hhh----hcccccch------hHHHHHHHHHHcCCc-hhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 211 11000000 000112223333321 222222111 135999999999999999888888888764
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+ ++|.+..+.|++.+.+.+...|.+++.+||.
T Consensus 499 s------------------------------------------~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~ 530 (555)
T TIGR01194 499 A------------------------------------------DQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530 (555)
T ss_pred c------------------------------------------CCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 3 5666666777665543333468899999975
No 317
>PLN03232 ABC transporter C family member; Provisional
Probab=99.73 E-value=1.2e-17 Score=194.23 Aligned_cols=179 Identities=12% Similarity=0.027 Sum_probs=114.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
.++|+|+||+|++| ++++|+|++|||||||++.|.|+++|++|.++ +++.++.+..... +.++++..++...+..
T Consensus 1249 ~~vL~~isl~I~~G---ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~-IdG~di~~i~~~~lR~~i~iVpQdp~LF~g 1324 (1495)
T PLN03232 1249 PPVLHGLSFFVSPS---EKVGVVGRTGAGKSSMLNALFRIVELEKGRIM-IDDCDVAKFGLTDLRRVLSIIPQSPVLFSG 1324 (1495)
T ss_pred CcccccceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCcCCCceEE-ECCEEhhhCCHHHHHhhcEEECCCCeeeCc
Confidence 36999999999999 99999999999999999999999999999987 7788876654433 3445554333222222
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFY 160 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~ 160 (415)
.+..+......+.+..+..+++....+.+++.+. .+...+.+.-. +||+|||||++||||+.+++..+++||+++
T Consensus 1325 TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~--~LSgGQrQrlaLARALLr~~~ILILDEATS-- 1400 (1495)
T PLN03232 1325 TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE--NFSVGQRQLLSLARALLRRSKILVLDEATA-- 1400 (1495)
T ss_pred cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCC--CCCHHHHHHHHHHHHHHhCCCEEEEECCcc--
Confidence 2222221111222222222222222222222210 00011111111 359999999999999998888888888754
Q ss_pred cccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 161 LFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 161 ~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.+|.+--..|++.||+.. .+.+++.++|+
T Consensus 1401 ----------------------------------------aLD~~Te~~Iq~~L~~~~--~~~TvI~IAHR 1429 (1495)
T PLN03232 1401 ----------------------------------------SVDVRTDSLIQRTIREEF--KSCTMLVIAHR 1429 (1495)
T ss_pred ----------------------------------------cCCHHHHHHHHHHHHHHc--CCCEEEEEeCC
Confidence 344455567888888763 47899999866
No 318
>PLN03130 ABC transporter C family member; Provisional
Probab=99.73 E-value=1.5e-17 Score=193.88 Aligned_cols=177 Identities=12% Similarity=0.036 Sum_probs=114.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~~ 82 (415)
+||+|+||+|++| ++++|+|++|||||||++.|.|+++|++|.++ +++.++.+..... +.++++..++...+...
T Consensus 1253 ~VL~~is~~I~~G---ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~-IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GT 1328 (1622)
T PLN03130 1253 PVLHGLSFEISPS---EKVGIVGRTGAGKSSMLNALFRIVELERGRIL-IDGCDISKFGLMDLRKVLGIIPQAPVLFSGT 1328 (1622)
T ss_pred ceecceeEEEcCC---CEEEEECCCCCCHHHHHHHHhCcCCCCCceEE-ECCEecccCCHHHHHhccEEECCCCcccccc
Confidence 6999999999999 99999999999999999999999999999987 7888887654333 44555553332222222
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhhhhc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELLSFY 160 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~ 160 (415)
+..+......+.+..+..+++....+.+++.+.. -++..+.. .+||+|||||++||||+.+++..+++||+++
T Consensus 1329 IreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~---GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATS-- 1403 (1622)
T PLN03130 1329 VRFNLDPFNEHNDADLWESLERAHLKDVIRRNSL---GLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATA-- 1403 (1622)
T ss_pred HHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCcc---ccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCC--
Confidence 2222211111222222222222222222222210 01111111 1359999999999999998888888888755
Q ss_pred cccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 161 LFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 161 ~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.+|.+--..|++.||+.. .|.+++.++|+
T Consensus 1404 ----------------------------------------aLD~~Te~~Iq~~I~~~~--~~~TvI~IAHR 1432 (1622)
T PLN03130 1404 ----------------------------------------AVDVRTDALIQKTIREEF--KSCTMLIIAHR 1432 (1622)
T ss_pred ----------------------------------------CCCHHHHHHHHHHHHHHC--CCCEEEEEeCC
Confidence 334444557888888763 47888888865
No 319
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.72 E-value=2.5e-17 Score=154.89 Aligned_cols=165 Identities=14% Similarity=0.116 Sum_probs=100.6
Q ss_pred EEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc-----hhhhh
Q psy13975 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-----SNLLR 85 (415)
Q Consensus 11 ~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-----~~Ll~ 85 (415)
|+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++. ....++++. .+.+.+ ..+..
T Consensus 1 l~i~~G---e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~----~~~~~i~~v--~q~~~~~~~~~~tv~~ 70 (223)
T TIGR03771 1 LSADKG---ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVK-VAGASPG----KGWRHIGYV--PQRHEFAWDFPISVAH 70 (223)
T ss_pred CccCCC---cEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCccch----HhhCcEEEe--cccccccCCCCccHHH
Confidence 578899 99999999999999999999999999999965 5443321 112234443 332211 00111
Q ss_pred hccCC-CCCCchhhHH-HHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhcccc
Q psy13975 86 FALNQ-ETLPHTMVML-VVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFY 163 (415)
Q Consensus 86 ~~l~~-~~~~~~~v~~-~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~ 163 (415)
..... .......... ..+......+++.++. .+..+..+..| |+||+||++||||+..++..+++|||
T Consensus 71 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--S~G~~qrv~laral~~~p~llilDEP------- 140 (223)
T TIGR03771 71 TVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL-TELADRPVGEL--SGGQRQRVLVARALATRPSVLLLDEP------- 140 (223)
T ss_pred HHHhccccccccccCCcHHHHHHHHHHHHHhCC-chhhcCChhhC--CHHHHHHHHHHHHHhcCCCEEEEeCC-------
Confidence 00000 0000000000 0000001112233322 12334455555 99999999999999988877777775
Q ss_pred CccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 164 SSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 164 ~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|....+.+.+.|++++. .|.+++++||.
T Consensus 141 -----------------------------------~~~LD~~~~~~l~~~l~~~~~-~~~tvii~sH~ 172 (223)
T TIGR03771 141 -----------------------------------FTGLDMPTQELLTELFIELAG-AGTAILMTTHD 172 (223)
T ss_pred -----------------------------------cccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 346777888899999999875 59999999954
No 320
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.6e-17 Score=173.68 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=43.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+.
T Consensus 14 ~~il~~vsl~i~~G---e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~ 59 (530)
T PRK15064 14 KPLFENISVKFGGG---NRYGLIGANGCGKSTFMKILGGDLEPSAGNVS 59 (530)
T ss_pred cEeEeCCEEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 46899999999999 99999999999999999999999999999965
No 321
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.72 E-value=1.7e-17 Score=150.38 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=95.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
.++|+|+||+|.+| ++++|+|+||||||||++++.+ +.|.+. +.+. .. .....++.+ +.+
T Consensus 8 ~~~l~~isl~i~~G---~~~~l~G~nG~GKSTLl~~il~----~~G~v~-~~~~-~~---~~~~~~~~~--~~q------ 67 (176)
T cd03238 8 VHNLQNLDVSIPLN---VLVVVTGVSGSGKSTLVNEGLY----ASGKAR-LISF-LP---KFSRNKLIF--IDQ------ 67 (176)
T ss_pred eeeecceEEEEcCC---CEEEEECCCCCCHHHHHHHHhh----cCCcEE-ECCc-cc---ccccccEEE--EhH------
Confidence 46899999999999 9999999999999999999853 567754 2211 00 000111111 110
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc--cccccchhhhhhc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA--RLRAHLIELLSFY 160 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~--~~~~~lde~~s~~ 160 (415)
..+++.+..-...+++.+..| |+||+||++||||+..+ +..+++|||
T Consensus 68 -------------------------~~~l~~~~L~~~~~~~~~~~L--SgGq~qrl~laral~~~~~p~llLlDEP---- 116 (176)
T cd03238 68 -------------------------LQFLIDVGLGYLTLGQKLSTL--SGGELQRVKLASELFSEPPGTLFILDEP---- 116 (176)
T ss_pred -------------------------HHHHHHcCCCccccCCCcCcC--CHHHHHHHHHHHHHhhCCCCCEEEEeCC----
Confidence 122333322000134455556 99999999999999977 666666664
Q ss_pred cccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 161 LFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 161 ~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
..+++.+..+.+.+.+++++. +|.+++++||..
T Consensus 117 --------------------------------------t~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~ 149 (176)
T cd03238 117 --------------------------------------STGLHQQDINQLLEVIKGLID-LGNTVILIEHNL 149 (176)
T ss_pred --------------------------------------cccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence 457778889999999999975 799999999553
No 322
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=8.2e-17 Score=142.93 Aligned_cols=126 Identities=19% Similarity=0.218 Sum_probs=95.7
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~~ 82 (415)
.+|+++||+|.+| ++++|+|+||+|||||+++|.|+.++..|.+. +.+.++....... ...+++. .
T Consensus 13 ~~l~~~~~~i~~g---~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~-~~~~~~~~~~~~~~~~~i~~~--~------- 79 (157)
T cd00267 13 TALDNVSLTLKAG---EIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL-IDGKDIAKLPLEELRRRIGYV--P------- 79 (157)
T ss_pred eeEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCccEEE-ECCEEcccCCHHHHHhceEEE--e-------
Confidence 5899999999999 99999999999999999999999999999964 5444332211100 1111111 0
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLF 162 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~ 162 (415)
+ +|+||+||++|||++...+..+++|||
T Consensus 80 -------q---------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp------ 107 (157)
T cd00267 80 -------Q---------------------------------------LSGGQRQRVALARALLLNPDLLLLDEP------ 107 (157)
T ss_pred -------e---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC------
Confidence 0 499999999999999966666666654
Q ss_pred cCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 163 YSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 163 ~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.++|.+..+.+.+.++.+... |.+++++||.
T Consensus 108 ------------------------------------~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~ 139 (157)
T cd00267 108 ------------------------------------TSGLDPASRERLLELLRELAEE-GRTVIIVTHD 139 (157)
T ss_pred ------------------------------------CcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4567778888899999988765 7899999965
No 323
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.72 E-value=4.6e-17 Score=159.84 Aligned_cols=182 Identities=18% Similarity=0.169 Sum_probs=123.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----cceEEEEEecCccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----HTRLGVWILDGEPA 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~~~l~i~~l~g~~~ 79 (415)
.++++|||++.+| +.++|||++|||||||-..|.++..+. |.+. |.+.++....... +.++.+++++...
T Consensus 301 ~AVd~isl~L~~g---qTlGlVGESGSGKsTlG~allrL~~s~-G~I~-F~G~~i~~~~~~~mrplR~~mQvVFQDPyg- 374 (534)
T COG4172 301 RAVDGISLTLRRG---QTLGLVGESGSGKSTLGLALLRLIPSQ-GEIR-FDGQDIDGLSRKEMRPLRRRMQVVFQDPYG- 374 (534)
T ss_pred EEeccceeEecCC---CeEEEEecCCCCcchHHHHHHhhcCcC-ceEE-ECCccccccChhhhhhhhhhceEEEeCCCC-
Confidence 4789999999999 999999999999999999999998876 8866 7777776544332 4567777776432
Q ss_pred chhhhhhccCCC-CCCchhhHHHHhcCCch-----------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 80 HSNLLRFALNQE-TLPHTMVMLVVSMTTPW-----------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 80 ~~~Ll~~~l~~~-~~~~~~v~~~~d~~~p~-----------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
+| ++. ++.. .+-.-+-...|. ..++.+.+--....++...+ |||||||++||||+..+
T Consensus 375 --SL-----sPRmtV~q-II~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEF--SGGQRQRIAIARAliLk 444 (534)
T COG4172 375 --SL-----SPRMTVGQ-IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF--SGGQRQRIAIARALILK 444 (534)
T ss_pred --CC-----CcccCHHH-HhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCccc--CcchhhHHHHHHHHhcC
Confidence 22 111 1110 011111111111 12333333223445566666 99999999999999999
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
|...++|||+|+.+ -.-...|...||.+-.+||.+++|
T Consensus 445 P~~i~LDEPTSALD------------------------------------------~SVQaQvv~LLr~LQ~k~~LsYLF 482 (534)
T COG4172 445 PELILLDEPTSALD------------------------------------------RSVQAQVLDLLRDLQQKHGLSYLF 482 (534)
T ss_pred CcEEEecCCchHhh------------------------------------------HHHHHHHHHHHHHHHHHhCCeEEE
Confidence 99999999876322 122456777899999999999999
Q ss_pred eccCCcccHHHHHHHHHHHHh
Q psy13975 228 TSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 228 tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.| +.+..++. +.|++.
T Consensus 483 IS----HDL~VvrA-l~~~vi 498 (534)
T COG4172 483 IS----HDLAVVRA-LCHRVI 498 (534)
T ss_pred Ee----ccHHHHHH-hhceEE
Confidence 99 55544443 444443
No 324
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.72 E-value=3.4e-17 Score=190.90 Aligned_cols=169 Identities=13% Similarity=0.130 Sum_probs=113.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.......+..+++..+.. ..+..
T Consensus 943 k~aL~~lsl~I~~G---ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~-i~G~dI~~~~~~~r~~IG~~pQ~~-~L~~~ 1017 (2272)
T TIGR01257 943 RPAVDRLNITFYEN---QITAFLGHNGAGKTTTLSILTGLLPPTSGTVL-VGGKDIETNLDAVRQSLGMCPQHN-ILFHH 1017 (2272)
T ss_pred ceEEEeeEEEEcCC---cEEEEECCCCChHHHHHHHHhcCCCCCceEEE-ECCEECcchHHHHhhcEEEEecCC-cCCCC
Confidence 46899999999999 99999999999999999999999999999976 556565432111233455543321 11111
Q ss_pred hhhhccCCCCCCchhhHHH-H-hcC------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLV-V-SMT------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~-~-d~~------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
+ ...+...+.. + ... +...+++.++. .+..++.+..| |+|||||++||||+..++..+++|
T Consensus 1018 L--------TV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL-~~~~~~~~~~L--SGGqKQRLsLArALi~~PkVLLLD 1086 (2272)
T TIGR01257 1018 L--------TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGL-HHKRNEEAQDL--SGGMQRKLSVAIAFVGDAKVVVLD 1086 (2272)
T ss_pred C--------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chhhcCChhhC--CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 1 1111110000 0 000 01123334433 23445556666 999999999999999777777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| +.++|...++.+.+.|+++. .|.+++++||.
T Consensus 1087 EP------------------------------------------TSGLDp~sr~~l~~lL~~l~--~g~TIIltTHd 1119 (2272)
T TIGR01257 1087 EP------------------------------------------TSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHH 1119 (2272)
T ss_pred CC------------------------------------------CcCCCHHHHHHHHHHHHHHh--CCCEEEEEECC
Confidence 65 45777888999999999984 48999999964
No 325
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=2.1e-17 Score=158.47 Aligned_cols=198 Identities=15% Similarity=0.081 Sum_probs=115.4
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE----------EeceeecCCCCccc-cceEEEE
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL----------EYAYINVSDEYRED-HTRLGVW 72 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il----------~~~~~~v~~~~~~~-~~~l~i~ 72 (415)
.+|+|+++ +.+| ++++|+|+||||||||+++|+|+++|+.|.+. .+.+.++....... ...+.+.
T Consensus 15 ~~l~~i~~-i~~G---e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 90 (255)
T cd03236 15 FKLHRLPV-PREG---QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVI 90 (255)
T ss_pred hhhhcCCC-CCCC---CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhccccee
Confidence 48999995 9999 99999999999999999999999999999964 12222221110000 0111122
Q ss_pred EecCcccchhhhhhccCCCCCCchhhHHHHhcCC----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 73 ILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTT----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 73 ~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
+..+... + .+..+.. .+...+.... ...+++.++. ...+++....| |+||+||++|||++..++
T Consensus 91 ~~~~~~~---~-----~~~~~~~-~i~~~l~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--S~G~~qrv~laral~~~p 158 (255)
T cd03236 91 VKPQYVD---L-----IPKAVKG-KVGELLKKKDERGKLDELVDQLEL-RHVLDRNIDQL--SGGELQRVAIAAALARDA 158 (255)
T ss_pred eecchhc---c-----CchHHHH-HHHHHhchhHHHHHHHHHHHHcCC-chhhcCChhhC--CHHHHHHHHHHHHHHhCC
Confidence 2111110 0 0000000 0111111000 1123333333 13344455555 999999999999999777
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++||| +.+++.+..+.++..+++++. .|.+++++
T Consensus 159 ~illlDEP------------------------------------------ts~LD~~~~~~l~~~l~~l~~-~~~tIIii 195 (255)
T cd03236 159 DFYFFDEP------------------------------------------SSYLDIKQRLNAARLIRELAE-DDNYVLVV 195 (255)
T ss_pred CEEEEECC------------------------------------------CCCCCHHHHHHHHHHHHHHHh-cCCEEEEE
Confidence 77777765 346777778888899998875 48999999
Q ss_pred ccCCcccHHHHHHHHHHHHhCCCCCCCcceeeCCeeEEeCC
Q psy13975 229 SAKEDKNCDLLYKYLAHRLYGFPFRTSALIVEKDAVLIPSG 269 (415)
Q Consensus 229 S~k~~~n~~~l~~~l~h~l~~~~f~~~a~v~d~d~i~iP~g 269 (415)
||. .+.+..+ .++++-+. ..+....-+-+|++
T Consensus 196 SHd----~~~~~~~-ad~i~~l~----~~~~~~~~~~~~~~ 227 (255)
T cd03236 196 EHD----LAVLDYL-SDYIHCLY----GEPGAYGVVTLPKS 227 (255)
T ss_pred ECC----HHHHHHh-CCEEEEEC----CCCCcceeeecCcc
Confidence 954 4433333 34444332 11223345556666
No 326
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=4.7e-17 Score=175.11 Aligned_cols=187 Identities=12% Similarity=0.136 Sum_probs=114.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. + +. ..+++++.+.....+..
T Consensus 332 ~~il~~vsl~i~~G---e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~-~-~~---------~~~i~y~~q~~~~l~~~ 397 (635)
T PRK11147 332 KQLVKDFSAQVQRG---DKIALIGPNGCGKTTLLKLMLGQLQADSGRIH-C-GT---------KLEVAYFDQHRAELDPE 397 (635)
T ss_pred eEEEcCcEEEEcCC---CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE-E-CC---------CcEEEEEeCcccccCCC
Confidence 45899999999999 99999999999999999999999999999864 2 11 12455543321111111
Q ss_pred --hhhhccCCCCCCchhhHHHHhcCC----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 83 --LLRFALNQETLPHTMVMLVVSMTT----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 83 --Ll~~~l~~~~~~~~~v~~~~d~~~----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
+..++.... .. ..... ...++..+......+++.+..| |+|||||++|||++..++..+++|||
T Consensus 398 ~tv~e~l~~~~--~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGekqRl~la~al~~~p~lLlLDEP 467 (635)
T PRK11147 398 KTVMDNLAEGK--QE------VMVNGRPRHVLGYLQDFLFHPKRAMTPVKAL--SGGERNRLLLARLFLKPSNLLILDEP 467 (635)
T ss_pred CCHHHHHHhhc--cc------ccccchHHHHHHHHHhcCCCHHHHhChhhhC--CHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 111100000 00 00000 0122333322123455666767 99999999999999988888787876
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccH
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNC 236 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~ 236 (415)
+ .++|.+..+.+.+.|+.+ +.+++++|| +.
T Consensus 468 t------------------------------------------~~LD~~~~~~l~~~l~~~----~~tvi~vSH----d~ 497 (635)
T PRK11147 468 T------------------------------------------NDLDVETLELLEELLDSY----QGTVLLVSH----DR 497 (635)
T ss_pred C------------------------------------------CCCCHHHHHHHHHHHHhC----CCeEEEEEC----CH
Confidence 4 355556667777766654 668999994 44
Q ss_pred HHHHHHHHHHHhCCCCCCCcceee--CCeeEEeCCCCcc
Q psy13975 237 DLLYKYLAHRLYGFPFRTSALIVE--KDAVLIPSGWDNM 273 (415)
Q Consensus 237 ~~l~~~l~h~l~~~~f~~~a~v~d--~d~i~iP~gwDs~ 273 (415)
+.+..+ .++++ +++ ..-...+.+||.|
T Consensus 498 ~~~~~~-~d~i~---------~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 498 QFVDNT-VTECW---------IFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHh-cCEEE---------EEeCCCeEEEccCCHHHH
Confidence 333332 23322 232 2334457778877
No 327
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.7e-17 Score=171.09 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=102.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.. ..++++........+.
T Consensus 332 ~~~l~~is~~i~~G---e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~-~~~----------~~~i~~~~q~~~~~~~- 396 (530)
T PRK15064 332 GPLFKNLNLLLEAG---ERLAIIGENGVGKTTLLRTLVGELEPDSGTVK-WSE----------NANIGYYAQDHAYDFE- 396 (530)
T ss_pred ceeecCcEEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECC----------ceEEEEEcccccccCC-
Confidence 46899999999999 99999999999999999999999999999865 221 1234444332111110
Q ss_pred hhhhccCCCCCCchhhHHHHh-c---CC----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVVS-M---TT----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d-~---~~----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
....+...+. + .. ...+++.+.......++.+..| |+|||||++|||++..++..+++|
T Consensus 397 -----------~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGq~qrv~la~al~~~p~lllLD 463 (530)
T PRK15064 397 -----------NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVL--SGGEKGRMLFGKLMMQKPNVLVMD 463 (530)
T ss_pred -----------CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCccccc--CHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0011111000 0 00 1123333332113445566666 999999999999999877777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||+ .++|....+.+.+.|+++ +.++|++||.
T Consensus 464 EPt------------------------------------------~~LD~~~~~~l~~~l~~~----~~tvi~vsHd 494 (530)
T PRK15064 464 EPT------------------------------------------NHMDMESIESLNMALEKY----EGTLIFVSHD 494 (530)
T ss_pred CCC------------------------------------------CCCCHHHHHHHHHHHHHC----CCEEEEEeCC
Confidence 763 466667777777777765 5589999943
No 328
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.71 E-value=4.7e-17 Score=149.28 Aligned_cols=158 Identities=20% Similarity=0.325 Sum_probs=115.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-C-CC-CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-D-SP-EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~-~p-~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+.|+|||||++++.+- . .+ ....+.+|....+.. .....++.+|+++|+..|..+ ...++.+.
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~--~~~~~~l~iwDt~G~~~~~~l-----~~~~~~~a 79 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL--DGRRVKLQLWDTSGQGRFCTI-----FRSYSRGA 79 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE--CCEEEEEEEEeCCCcHHHHHH-----HHHHhcCC
Confidence 47999999999999999999852 2 11 112222332222211 234578899999999888777 44455666
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|++++++ ++.+..|.+.+.++. |
T Consensus 80 d~illVfD~t~~~S-f~~~~~w~~~i~~~~-------------------------------------------~------ 109 (189)
T cd04121 80 QGIILVYDITNRWS-FDGIDRWIKEIDEHA-------------------------------------------P------ 109 (189)
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHHHHhC-------------------------------------------C------
Confidence 6 478899999888 777788866553321 1
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|++||+||+|+.. .+.+..++ ++.+|.++|..+++|||+++.|++.+|.+|+..++.
T Consensus 110 ----~~piilVGNK~DL~~----~~~v~~~~-------~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 110 ----GVPKILVGNRLHLAF----KRQVATEQ-------AQAYAERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred ----CCCEEEEEECccchh----ccCCCHHH-------HHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999953 23444444 788888999999999999999999999999988875
No 329
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.71 E-value=2.8e-17 Score=191.32 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=115.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
.++|+|+||+|++| ++++|+|++|||||||++.|.|+++|++|.++ +++.++.+..... +.++++..++...+-.
T Consensus 1299 ~~vL~~is~~I~~G---ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~-IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g 1374 (1522)
T TIGR00957 1299 DLVLRHINVTIHGG---EKVGIVGRTGAGKSSLTLGLFRINESAEGEII-IDGLNIAKIGLHDLRFKITIIPQDPVLFSG 1374 (1522)
T ss_pred cccccceeEEEcCC---CEEEEECCCCCCHHHHHHHHhcCccCCCCeEE-ECCEEccccCHHHHHhcCeEECCCCcccCc
Confidence 36999999999999 99999999999999999999999999999977 7888887655433 4455555333222222
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.+..+..+...+.+..+..++.....+.++..+. .-++..+.. -+||+|||||++||||+.+++..+++||+++
T Consensus 1375 TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp---~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTS- 1450 (1522)
T TIGR00957 1375 SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALP---DKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATA- 1450 (1522)
T ss_pred cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCc---cCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcc-
Confidence 2222211111122222222222222222222210 011222222 2359999999999999998888888888754
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.+|.+--..|++.||+.. .+.+++.++|+
T Consensus 1451 -----------------------------------------alD~~Te~~Iq~~l~~~~--~~~TvI~IAHR 1479 (1522)
T TIGR00957 1451 -----------------------------------------AVDLETDNLIQSTIRTQF--EDCTVLTIAHR 1479 (1522)
T ss_pred -----------------------------------------cCCHHHHHHHHHHHHHHc--CCCEEEEEecC
Confidence 344455567888888763 47899998865
No 330
>PLN03211 ABC transporter G-25; Provisional
Probab=99.71 E-value=5.5e-17 Score=174.66 Aligned_cols=170 Identities=14% Similarity=0.070 Sum_probs=107.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC--CcEEEEeceeecCCCCccccceEEEEEecCccc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPA- 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~- 79 (415)
+.+|+|+||++.+| ++++|+|+||||||||+++|+|..+|+ +|.++ +++.++.. ....++++. .++..
T Consensus 81 ~~iL~~vs~~i~~G---e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~-inG~~~~~---~~~~~i~yv--~Q~~~l 151 (659)
T PLN03211 81 RTILNGVTGMASPG---EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTIL-ANNRKPTK---QILKRTGFV--TQDDIL 151 (659)
T ss_pred CeeeeCCEEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEE-ECCEECch---hhccceEEE--Cccccc
Confidence 56999999999999 999999999999999999999998875 78866 55554321 122334444 33221
Q ss_pred chhhhhhccCCCCCCchhhHHH-HhcCC---c-------hhHHHHHHhHHHHHHHHHh---hhcCChhhHHHHHHHHHhh
Q psy13975 80 HSNLLRFALNQETLPHTMVMLV-VSMTT---P-------WNIIDELHNWASVLQDHID---SLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~-~d~~~---p-------~~~l~~l~~w~~~l~~~~~---~L~lSgGekQRl~LArAl~ 145 (415)
+..+ .+.+...+.. +.... . ..+++.++.. +..+..+. .-+||+|||||+.||+++.
T Consensus 152 ~~~l--------TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 152 YPHL--------TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred CCcC--------CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 1111 1111111100 00000 0 0112222220 11111110 0135999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+.+||| +.++|......+.+.|++++. .|.++
T Consensus 223 ~~P~iLlLDEP------------------------------------------tsgLD~~~~~~l~~~L~~l~~-~g~Tv 259 (659)
T PLN03211 223 INPSLLILDEP------------------------------------------TSGLDATAAYRLVLTLGSLAQ-KGKTI 259 (659)
T ss_pred hCCCEEEEeCC------------------------------------------CCCcCHHHHHHHHHHHHHHHh-CCCEE
Confidence 77777777765 457777888899999999986 59999
Q ss_pred EEeccCCc
Q psy13975 226 FYTSAKED 233 (415)
Q Consensus 226 i~tS~k~~ 233 (415)
+.+||...
T Consensus 260 I~~sH~~~ 267 (659)
T PLN03211 260 VTSMHQPS 267 (659)
T ss_pred EEEecCCC
Confidence 99997654
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3e-17 Score=176.53 Aligned_cols=47 Identities=28% Similarity=0.315 Sum_probs=44.2
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
++.+|+||||+|.+| ++++|+|+||||||||+++|+|+..|++|.+.
T Consensus 13 ~~~~l~~vs~~i~~G---e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~ 59 (638)
T PRK10636 13 VRVLLDNATATINPG---QKVGLVGKNGCGKSTLLALLKNEISADGGSYT 59 (638)
T ss_pred CceeecCcEEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 356899999999999 99999999999999999999999999999965
No 332
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.7e-17 Score=148.06 Aligned_cols=172 Identities=16% Similarity=0.200 Sum_probs=105.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|.++||++.+| +.+.|.|+||+|||||+|+|+|+.+|++|++. |....+..... ..+..+.++..++-.
T Consensus 15 ~~lf~~L~f~l~~G---e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~-~~~~~i~~~~~--~~~~~l~yLGH~~gi-- 86 (209)
T COG4133 15 RTLFSDLSFTLNAG---EALQITGPNGAGKTTLLRILAGLLRPDAGEVY-WQGEPIQNVRE--SYHQALLYLGHQPGI-- 86 (209)
T ss_pred ceeecceeEEEcCC---CEEEEECCCCCcHHHHHHHHHcccCCCCCeEE-ecCCCCccchh--hHHHHHHHhhccccc--
Confidence 56899999999999 99999999999999999999999999999965 44333322211 111111112211110
Q ss_pred hhhhccCCCCCCchhhHHH-Hh---cCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 83 LLRFALNQETLPHTMVMLV-VS---MTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~-~d---~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
+..++. +.+..+... .. -...|..+..+++ ....+..+.+| |.|||+||+|||-|...++.-++|||.
T Consensus 87 --K~eLTa--~ENL~F~~~~~~~~~~~~i~~Al~~vgL-~g~~dlp~~~L--SAGQqRRvAlArL~ls~~pLWiLDEP~- 158 (209)
T COG4133 87 --KTELTA--LENLHFWQRFHGSGNAATIWEALAQVGL-AGLEDLPVGQL--SAGQQRRVALARLWLSPAPLWILDEPF- 158 (209)
T ss_pred --cchhhH--HHHHHHHHHHhCCCchhhHHHHHHHcCc-ccccccchhhc--chhHHHHHHHHHHHcCCCCceeecCcc-
Confidence 000000 011111000 00 0113344444444 34444555555 999999999999999777776777753
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
..+|.+..+.+-..+..-|.+ |.-++.|||.+
T Consensus 159 -----------------------------------------taLDk~g~a~l~~l~~~H~~~-GGiVllttHq~ 190 (209)
T COG4133 159 -----------------------------------------TALDKEGVALLTALMAAHAAQ-GGIVLLTTHQP 190 (209)
T ss_pred -----------------------------------------cccCHHHHHHHHHHHHHHhcC-CCEEEEecCCc
Confidence 345556666666667766654 66778888653
No 333
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=2.5e-17 Score=147.76 Aligned_cols=175 Identities=14% Similarity=0.092 Sum_probs=118.4
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccch
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~ 81 (415)
+..+|+++||+|.+| +.-+|||||||||||+|..|+|..+|+.|+++.....++........++.+|.--.+.+
T Consensus 17 GF~Aln~ls~~v~~G---elr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~P--- 90 (249)
T COG4674 17 GFKALNDLSFSVDPG---ELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP--- 90 (249)
T ss_pred ceeeeeeeEEEecCC---eEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCC---
Confidence 356899999999999 99999999999999999999999999999987333366666555556777776544433
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCC--chhHHHHH-------------------HhHHHHHHHHHhhhcCChhhHHHHHH
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTT--PWNIIDEL-------------------HNWASVLQDHIDSLNIGAHDYQAGRC 140 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~--p~~~l~~l-------------------~~w~~~l~~~~~~L~lSgGekQRl~L 140 (415)
.-+.+..+..++++.. ...++..+ .+ .+..+..+..| |.||||+++|
T Consensus 91 ---------tVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL-~~~~~~~A~~L--SHGqKQwLEI 158 (249)
T COG4674 91 ---------TVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL-GDERDRLAALL--SHGQKQWLEI 158 (249)
T ss_pred ---------eehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHccc-chhhhhhhhhh--ccchhhhhhh
Confidence 1223333333332221 11112111 11 12223333334 9999999999
Q ss_pred HHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH
Q psy13975 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK 220 (415)
Q Consensus 141 ArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~ 220 (415)
.+-+.|+|..+++||| ..++++++....-+.|+.++.+
T Consensus 159 GMll~Q~P~lLLlDEP------------------------------------------vAGMTd~Et~~taeLl~~la~~ 196 (249)
T COG4674 159 GMLLAQDPKLLLLDEP------------------------------------------VAGMTDAETEKTAELLKSLAGK 196 (249)
T ss_pred heeeccCCcEEEecCc------------------------------------------cCCCcHHHHHHHHHHHHHHhcC
Confidence 9999988888888775 2478888888888899999865
Q ss_pred hCCeEEEeccCCcccHHHHHHH
Q psy13975 221 FGAGLFYTSAKEDKNCDLLYKY 242 (415)
Q Consensus 221 ~Gasli~tS~k~~~n~~~l~~~ 242 (415)
+ +++.+- +...-++.+
T Consensus 197 h--silVVE----HDM~Fvr~~ 212 (249)
T COG4674 197 H--SILVVE----HDMGFVREI 212 (249)
T ss_pred c--eEEEEe----ccHHHHHHh
Confidence 5 444442 555444443
No 334
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.71 E-value=1.4e-16 Score=169.12 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=43.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+.
T Consensus 20 ~~il~~vs~~i~~G---e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~ 65 (556)
T PRK11819 20 KQILKDISLSFFPG---AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR 65 (556)
T ss_pred CeeeeCceEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 56999999999999 99999999999999999999999999999965
No 335
>KOG0091|consensus
Probab=99.71 E-value=3e-17 Score=142.32 Aligned_cols=178 Identities=19% Similarity=0.363 Sum_probs=136.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-----CCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-----GIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-----Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-.+++||++-+|||+||+.++ ++.+|+-|. +| +...-......+.++.+|+++|++.|+++ +..+|+
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgv--df-farlie~~pg~riklqlwdtagqerfrsi-----tksyyr 80 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGV--DF-FARLIELRPGYRIKLQLWDTAGQERFRSI-----TKSYYR 80 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccch--HH-HHHHHhcCCCcEEEEEEeeccchHHHHHH-----HHHHhh
Confidence 468899999999999999996 356676665 12 22233334556788999999999999999 777888
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|+++..+ ++.+..|...+..++.. |.
T Consensus 81 nsvgvllvyditnr~s-fehv~~w~~ea~m~~q~-----------------------------------------P~--- 115 (213)
T KOG0091|consen 81 NSVGVLLVYDITNRES-FEHVENWVKEAAMATQG-----------------------------------------PD--- 115 (213)
T ss_pred cccceEEEEeccchhh-HHHHHHHHHHHHHhcCC-----------------------------------------CC---
Confidence 877 578899999877 89999996655444420 11
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPFR 253 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f~ 253 (415)
-+-..+||+|+|+.. .+.++.|+ ..+|+..+|..+++||+|++.|+++.|..+...+|..-+
T Consensus 116 ------k~VFlLVGhKsDL~S----qRqVt~EE-------aEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~- 177 (213)
T KOG0091|consen 116 ------KVVFLLVGHKSDLQS----QRQVTAEE-------AEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQ- 177 (213)
T ss_pred ------eeEEEEeccccchhh----hccccHHH-------HHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHh-
Confidence 456789999999974 46677666 789999999999999999999999999999999986422
Q ss_pred CCcceeeCCeeEEeCCCCcccc
Q psy13975 254 TSALIVEKDAVLIPSGWDNMKK 275 (415)
Q Consensus 254 ~~a~v~d~d~i~iP~gwDs~~k 275 (415)
..-+-+--||+..+.
T Consensus 178 -------qGeik~edgw~gvKS 192 (213)
T KOG0091|consen 178 -------QGEIKLEDGWGGVKS 192 (213)
T ss_pred -------cCceeeeeccccccc
Confidence 223455567777665
No 336
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.71 E-value=2.6e-17 Score=190.16 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=111.0
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~~ 82 (415)
++|+|+||+|++| ++++|+|+||||||||+++|.|+++|++|.++..++.++....... +..++++.+....+...
T Consensus 399 ~vL~~isl~i~~G---e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~T 475 (1466)
T PTZ00265 399 EIYKDLNFTLTEG---KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNS 475 (1466)
T ss_pred ceeccceEEEcCC---CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhcc
Confidence 6999999999999 9999999999999999999999999999998722444544332221 23455543332222122
Q ss_pred hhhhccCCC-CCCc---------------------------------------hhhHHHHhc-------C--CchhHHHH
Q psy13975 83 LLRFALNQE-TLPH---------------------------------------TMVMLVVSM-------T--TPWNIIDE 113 (415)
Q Consensus 83 Ll~~~l~~~-~~~~---------------------------------------~~v~~~~d~-------~--~p~~~l~~ 113 (415)
+..+..... .... ..+...++. . ..+.+++.
T Consensus 476 I~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~ 555 (1466)
T PTZ00265 476 IKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKK 555 (1466)
T ss_pred HHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHH
Confidence 211111000 0000 000001110 0 01111222
Q ss_pred HHhHHHHHHHHHhh---------hcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEE
Q psy13975 114 LHNWASVLQDHIDS---------LNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIV 184 (415)
Q Consensus 114 l~~w~~~l~~~~~~---------L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpii 184 (415)
+..+ +.+.+..+. ..||||||||++||||+..+|..+++||+++
T Consensus 556 ~~l~-~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS-------------------------- 608 (1466)
T PTZ00265 556 VLIH-DFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS-------------------------- 608 (1466)
T ss_pred hCcH-HHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc--------------------------
Confidence 2221 222211111 1259999999999999998888888888644
Q ss_pred EEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 185 VVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 185 vV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++|.+....|++.|+++..+.|.+++++||.
T Consensus 609 ----------------aLD~~se~~i~~~L~~~~~~~g~TvIiIsHr 639 (1466)
T PTZ00265 609 ----------------SLDNKSEYLVQKTINNLKGNENRITIIIAHR 639 (1466)
T ss_pred ----------------ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 5566677788899998865568999999965
No 337
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.70 E-value=9.3e-17 Score=146.40 Aligned_cols=158 Identities=18% Similarity=0.304 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-C----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-D----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+- + .|+-|. .|. ..+. ......++.+|+++|++.|..+ .+.+++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~--~~~-~~~~--~~~~~~~l~iwDtaG~e~~~~~-----~~~~~~ 75 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE--NYT-ASFE--IDTQRIELSLWDTSGSPYYDNV-----RPLSYP 75 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceee--eeE-EEEE--ECCEEEEEEEEECCCchhhHhh-----hhhhcC
Confidence 57999999999999999999742 2 233332 121 1111 1234578999999999888777 555677
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
+.. +++++|++++.+ ++.+ ..|.+.+++.. |
T Consensus 76 ~ad~~ilvyDit~~~S-f~~~~~~w~~~i~~~~-------------------------------------------~--- 108 (182)
T cd04172 76 DSDAVLICFDISRPET-LDSVLKKWKGEIQEFC-------------------------------------------P--- 108 (182)
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHHHC-------------------------------------------C---
Confidence 776 468999999887 5554 78866554432 1
Q ss_pred cccccccCCcEEEEEeCcchhhhhh--------hcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCccc-HHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLE--------KDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKN-CDLLYKY 242 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE--------~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n-~~~l~~~ 242 (415)
.+|+++||||+|+.+... +.+.++.++ .+++|.++|+ .+++||||++.| ++.+|..
T Consensus 109 -------~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~-------~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 109 -------NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ-------GANMAKQIGAATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred -------CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHH-------HHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence 579999999999854211 122344444 7899999996 899999999999 9999999
Q ss_pred HHHHHh
Q psy13975 243 LAHRLY 248 (415)
Q Consensus 243 l~h~l~ 248 (415)
++...+
T Consensus 175 ~~~~~~ 180 (182)
T cd04172 175 ATLACV 180 (182)
T ss_pred HHHHHh
Confidence 876544
No 338
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=3.9e-17 Score=144.75 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=107.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-ccc-------------cce
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-RED-------------HTR 68 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-~~~-------------~~~ 68 (415)
..||++||++-.+| ..+.|||.+||||||+|+||.=++.|+.|.+. ..+..+.-.. .+. +.+
T Consensus 19 ~eVLKGvSL~A~~G---dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~-v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 19 HEVLKGVSLQANAG---DVISIIGSSGSGKSTFLRCINFLEKPSAGSIR-VNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred chhhcceeeecCCC---CEEEEecCCCCchhHHHHHHHhhcCCCCceEE-ECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 47899999999999 99999999999999999999999999999976 3333322110 000 111
Q ss_pred EEEEEecCcccchhhhhhccCCCCCCchhhHHH--------HhcCC------chhHHHHHHhHHHHHHHHHhhhcCChhh
Q psy13975 69 LGVWILDGEPAHSNLLRFALNQETLPHTMVMLV--------VSMTT------PWNIIDELHNWASVLQDHIDSLNIGAHD 134 (415)
Q Consensus 69 l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~--------~d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGe 134 (415)
++++++. -+.+.+++++.+ +-.++ ...++..+.. .+..+.+...| ||||
T Consensus 95 L~mVFQ~--------------FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi-~ek~~~YP~~L--SGGQ 157 (256)
T COG4598 95 LGMVFQH--------------FNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGI-AEKADAYPAHL--SGGQ 157 (256)
T ss_pred hhHhhhh--------------cchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCc-hhhhhcCcccc--CchH
Confidence 2222111 112333333322 11111 1122333333 23334455555 9999
Q ss_pred HHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHH
Q psy13975 135 YQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYI 214 (415)
Q Consensus 135 kQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~L 214 (415)
+||++|||||+..|...++||| +..+|+|-.--++..+
T Consensus 158 QQR~aIARaLameP~vmLFDEP------------------------------------------TSALDPElVgEVLkv~ 195 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEP------------------------------------------TSALDPELVGEVLKVM 195 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCC------------------------------------------cccCCHHHHHHHHHHH
Confidence 9999999999966666666665 4456677888889999
Q ss_pred HHHHHHhCCeEEEeccC
Q psy13975 215 RKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 215 R~l~~~~Gasli~tS~k 231 (415)
|.+|.+ |-+.+.+++-
T Consensus 196 ~~LAeE-grTMv~VTHE 211 (256)
T COG4598 196 QDLAEE-GRTMVVVTHE 211 (256)
T ss_pred HHHHHh-CCeEEEEeee
Confidence 999875 8888888743
No 339
>KOG0094|consensus
Probab=99.70 E-value=6.9e-17 Score=144.22 Aligned_cols=162 Identities=22% Similarity=0.327 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-CC-CC-CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-GI-DS-PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-Gl-~~-p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-++++||+.++|||+||.+++ +. .. ...+.+++|....+ ...+...++.+|+++|++.|..| .+.++++.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~--~l~d~~vrLQlWDTAGQERFrsl-----ipsY~Rds 95 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTM--YLEDRTVRLQLWDTAGQERFRSL-----IPSYIRDS 95 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEE--EEcCcEEEEEEEecccHHHHhhh-----hhhhccCC
Confidence 589999999999999999997 32 22 22344454544443 22345789999999999999999 78899999
Q ss_pred hh-HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 MV-MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~v-~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
.+ ++++|+++..+ ++....|++.+++.-.. +
T Consensus 96 ~vaviVyDit~~~S-fe~t~kWi~dv~~e~gs--------------------------------------------~--- 127 (221)
T KOG0094|consen 96 SVAVIVYDITDRNS-FENTSKWIEDVRRERGS--------------------------------------------D--- 127 (221)
T ss_pred eEEEEEEeccccch-HHHHHHHHHHHHhccCC--------------------------------------------C---
Confidence 86 78899999877 77888886554333210 0
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
++-|++||||.||.+. +.+..++ ....|.++|+-++.||+|.+.|+..+|+-|...+++..
T Consensus 128 ----~viI~LVGnKtDL~dk----rqvs~eE-------g~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 128 ----DVIIFLVGNKTDLSDK----RQVSIEE-------GERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred ----ceEEEEEcccccccch----hhhhHHH-------HHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence 4778999999999853 5666555 45788899999999999999999999999999988863
No 340
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.70 E-value=1.4e-16 Score=168.96 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=102.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.. ..++++........+..
T Consensus 335 ~~~l~~isl~i~~G---e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~-~~~----------~~~i~~v~q~~~~~~~~ 400 (552)
T TIGR03719 335 KLLIDDLSFKLPPG---GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK-IGE----------TVKLAYVDQSRDALDPN 400 (552)
T ss_pred eeeeccceEEEcCC---CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE-ECC----------ceEEEEEeCCccccCCC
Confidence 46899999999999 99999999999999999999999999999865 211 11344443321111111
Q ss_pred --hhhhccCCCCCCchhhHHHHhcCC----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 83 --LLRFALNQETLPHTMVMLVVSMTT----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 83 --Ll~~~l~~~~~~~~~v~~~~d~~~----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
...+....... ..... ...+++.+.......++.+..| |+|||||++|||++..++..+++|||
T Consensus 401 ~tv~e~l~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGe~qrv~la~al~~~p~lllLDEP 470 (552)
T TIGR03719 401 KTVWEEISGGLDI--------IQLGKREVPSRAYVGRFNFKGSDQQKKVGQL--SGGERNRVHLAKTLKSGGNVLLLDEP 470 (552)
T ss_pred CcHHHHHHhhccc--------cccCcchHHHHHHHHhCCCChhHhcCchhhC--CHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 11111000000 00000 0123344333212345556666 99999999999999987777777775
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+.++|.+..+.+.+.|++++ | +++++||
T Consensus 471 ------------------------------------------t~~LD~~~~~~l~~~l~~~~---~-~viivsH 498 (552)
T TIGR03719 471 ------------------------------------------TNDLDVETLRALEEALLEFA---G-CAVVISH 498 (552)
T ss_pred ------------------------------------------CCCCCHHHHHHHHHHHHHCC---C-eEEEEeC
Confidence 34677788888888888773 4 7888984
No 341
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.70 E-value=1.3e-16 Score=145.27 Aligned_cols=165 Identities=19% Similarity=0.334 Sum_probs=114.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-C----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQG-I----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G-l----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++++|+.|+|||||++++.+ . +.|+.|. .+....+.. ......+.+|++.|+..|..+ .+.++.+
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~--~~~~~~i~~--~~~~~~l~iwDt~G~~~~~~~-----~~~~~~~ 72 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGV--NFMEKTISI--RGTEITFSIWDLGGQREFINM-----LPLVCND 72 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce--EEEEEEEEE--CCEEEEEEEEeCCCchhHHHh-----hHHHCcC
Confidence 589999999999999999864 2 2344443 222112211 223568899999998888766 4445666
Q ss_pred hhh-HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TMV-MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~v-~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
+.+ ++++|.+++.+ ++.+..|...+.+.. + .
T Consensus 73 a~~iilv~D~t~~~s-~~~i~~~~~~~~~~~-------------------------------------------~--~-- 104 (182)
T cd04128 73 AVAILFMFDLTRKST-LNSIKEWYRQARGFN-------------------------------------------K--T-- 104 (182)
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHHHHHhC-------------------------------------------C--C--
Confidence 664 67899998876 666777755433221 0 0
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCCCC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPFRT 254 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f~~ 254 (415)
.+| ++|+||+|+...+ ..++...+....+.+|..+|+.+++||||++.|++.+|+.++..++..|...
T Consensus 105 -----~~p-ilVgnK~Dl~~~~------~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~~~ 172 (182)
T cd04128 105 -----AIP-ILVGTKYDLFADL------PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLPLTI 172 (182)
T ss_pred -----CCE-EEEEEchhccccc------cchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCh
Confidence 456 5789999996422 1122223345678889999999999999999999999999999999877543
No 342
>KOG0087|consensus
Probab=99.70 E-value=9.5e-17 Score=145.13 Aligned_cols=160 Identities=21% Similarity=0.337 Sum_probs=132.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC---CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID---SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~---~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
.+++++|++|+|||-||.+++..+ +..++.+++|....+.- .....+..+|+++|++.|..+ +..+|+.+
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v--d~k~vkaqIWDTAGQERyrAi-----tSaYYrgA 87 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV--DGKTVKAQIWDTAGQERYRAI-----TSAYYRGA 87 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee--cCcEEEEeeecccchhhhccc-----cchhhccc
Confidence 579999999999999999998532 33456667676655432 345678899999999999877 88899998
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|+++..+ ++.+..|...++.|.+.
T Consensus 88 vGAllVYDITr~~T-fenv~rWL~ELRdhad~------------------------------------------------ 118 (222)
T KOG0087|consen 88 VGALLVYDITRRQT-FENVERWLKELRDHADS------------------------------------------------ 118 (222)
T ss_pred ceeEEEEechhHHH-HHHHHHHHHHHHhcCCC------------------------------------------------
Confidence 8 478999998777 78999998888888742
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.+++++||||+||.. .+.+..|+ .+.+|.+.|..+++||+.++.|++..|..++..+|..
T Consensus 119 ----nivimLvGNK~DL~~----lraV~te~-------~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 119 ----NIVIMLVGNKSDLNH----LRAVPTED-------GKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKI 178 (222)
T ss_pred ----CeEEEEeecchhhhh----ccccchhh-------hHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHH
Confidence 789999999999965 35566555 7999999999999999999999999999999999974
No 343
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.70 E-value=1.4e-16 Score=168.97 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=106.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.. ..++++........+..
T Consensus 337 ~~~l~~isl~i~~G---e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~-~~~----------~~~i~~v~q~~~~~~~~ 402 (556)
T PRK11819 337 RLLIDDLSFSLPPG---GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK-IGE----------TVKLAYVDQSRDALDPN 402 (556)
T ss_pred eeeecceeEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECC----------ceEEEEEeCchhhcCCC
Confidence 45899999999999 99999999999999999999999999999965 211 12345443321011111
Q ss_pred h--hhhccCCCCCCchhhHHHHhcCC----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 83 L--LRFALNQETLPHTMVMLVVSMTT----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 83 L--l~~~l~~~~~~~~~v~~~~d~~~----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
+ .......... ..... ...+++.+.......++.+..| |+|||||++||||+..++..+++|||
T Consensus 403 ~tv~e~l~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 403 KTVWEEISGGLDI--------IKVGNREIPSRAYVGRFNFKGGDQQKKVGVL--SGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred CCHHHHHHhhccc--------ccccccHHHHHHHHHhCCCChhHhcCchhhC--CHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 1100000000 00000 0123444433112345566666 99999999999999987777777775
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccH
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNC 236 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~ 236 (415)
+.++|....+.+.+.|+.++ | +++++| +++
T Consensus 473 ------------------------------------------t~~LD~~~~~~l~~~l~~~~---~-tvi~vt----Hd~ 502 (556)
T PRK11819 473 ------------------------------------------TNDLDVETLRALEEALLEFP---G-CAVVIS----HDR 502 (556)
T ss_pred ------------------------------------------CCCCCHHHHHHHHHHHHhCC---C-eEEEEE----CCH
Confidence 34677788888888888762 4 788888 455
Q ss_pred HHHHH
Q psy13975 237 DLLYK 241 (415)
Q Consensus 237 ~~l~~ 241 (415)
+.+..
T Consensus 503 ~~~~~ 507 (556)
T PRK11819 503 WFLDR 507 (556)
T ss_pred HHHHH
Confidence 44444
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.7e-16 Score=170.65 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=103.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.. ..+++++.+.....
T Consensus 325 ~~il~~isl~i~~G---e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~-~~~----------~~~igy~~Q~~~~~--- 387 (638)
T PRK10636 325 RIILDSIKLNLVPG---SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG-LAK----------GIKLGYFAQHQLEF--- 387 (638)
T ss_pred eeeeccceEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE-ECC----------CEEEEEecCcchhh---
Confidence 46899999999999 99999999999999999999999999999965 210 12445443321000
Q ss_pred hhhhccCCCCCCchhhHHHH-hcCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 83 LLRFALNQETLPHTMVMLVV-SMTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~-d~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
+ .. ...+...+ .+.. ...++..+..-...+++.+..| ||||||||+|||++..++..+++||
T Consensus 388 l-----~~----~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~L--SgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 388 L-----RA----DESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRF--SGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred C-----Cc----cchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhC--CHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1 10 11111111 1100 1122333332112345566666 9999999999999998777777777
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|+ .++|.+..+.+.+.|+.+ +.++|++||.
T Consensus 457 Pt------------------------------------------~~LD~~~~~~l~~~L~~~----~gtvi~vSHd 486 (638)
T PRK10636 457 PT------------------------------------------NHLDLDMRQALTEALIDF----EGALVVVSHD 486 (638)
T ss_pred CC------------------------------------------CCCCHHHHHHHHHHHHHc----CCeEEEEeCC
Confidence 53 466777788888888876 4589999943
No 345
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.69 E-value=2.3e-16 Score=170.08 Aligned_cols=171 Identities=15% Similarity=0.087 Sum_probs=113.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-----cceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-----HTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-----~~~l~i~~l~g~ 77 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.++ |++.++....... ...+++...+..
T Consensus 21 ~~il~~vs~~i~~G---e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~-~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~ 96 (648)
T PRK10535 21 VEVLKGISLDIYAG---EMVAIVGASGSGKSTLMNILGCLDKPTSGTYR-VAGQDVATLDADALAQLRREHFGFIFQRYH 96 (648)
T ss_pred eeeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE-ECCEEcCcCCHHHHHHHHhccEEEEeCCcc
Confidence 35899999999999 99999999999999999999999999999976 6666655433222 223455433321
Q ss_pred ccchhhhhhccCCCCCCchhhHHHHhcC--------CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 78 PAHSNLLRFALNQETLPHTMVMLVVSMT--------TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~~~d~~--------~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.+..+ ...+...+...... +...+++.++. .+.++..+..| |+||+||++|||||..+|.
T Consensus 97 -l~~~~--------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl-~~~~~~~~~~L--S~Gq~qrv~LAraL~~~P~ 164 (648)
T PRK10535 97 -LLSHL--------TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGL-EDRVEYQPSQL--SGGQQQRVSIARALMNGGQ 164 (648)
T ss_pred -cCCCC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-hhhhcCCcccC--CHHHHHHHHHHHHHhcCCC
Confidence 11111 00000000000000 01123333333 23344555555 9999999999999997777
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++||| +.++|.+..+.+.+.+++++. .|.+++++|
T Consensus 165 lLllDEP------------------------------------------~~gLD~~s~~~l~~ll~~l~~-~g~tilivs 201 (648)
T PRK10535 165 VILADEP------------------------------------------TGALDSHSGEEVMAILHQLRD-RGHTVIIVT 201 (648)
T ss_pred EEEEECC------------------------------------------CCCCCHHHHHHHHHHHHHHHh-cCCEEEEEC
Confidence 6666665 457777888999999998874 589999999
Q ss_pred cCC
Q psy13975 230 AKE 232 (415)
Q Consensus 230 ~k~ 232 (415)
|..
T Consensus 202 H~~ 204 (648)
T PRK10535 202 HDP 204 (648)
T ss_pred CCH
Confidence 654
No 346
>PTZ00243 ABC transporter; Provisional
Probab=99.69 E-value=9e-17 Score=187.01 Aligned_cols=175 Identities=8% Similarity=-0.028 Sum_probs=110.6
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCccc-c-
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPA-H- 80 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~-~- 80 (415)
+||+||||+|++| ++++|+|++|||||||++.|.|+++|++|.++ +++.++....... +.++++. ++++. |
T Consensus 1324 ~vL~~vsf~I~~G---ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~-IDG~di~~i~l~~LR~~I~iV--pQdp~LF~ 1397 (1560)
T PTZ00243 1324 LVLRGVSFRIAPR---EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR-VNGREIGAYGLRELRRQFSMI--PQDPVLFD 1397 (1560)
T ss_pred ceeecceEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEEcccCCHHHHHhcceEE--CCCCcccc
Confidence 4999999999999 99999999999999999999999999999987 7888877654333 3444444 44432 1
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcc-cccccchhhh
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFA-RLRAHLIELL 157 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~-~~~~~lde~~ 157 (415)
..+..++.+...+.+..+...+.....+.++..+. .-++..+.. .+||+|||||++||||+.++ +..+++||++
T Consensus 1398 gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp---~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEAT 1474 (1560)
T PTZ00243 1398 GTVRQNVDPFLEASSAEVWAALELVGLRERVASES---EGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEAT 1474 (1560)
T ss_pred ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCc---ccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 22211111111122222222222222222121110 001112211 23599999999999999975 6777788875
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+ .+|.+--+.|++.|++.. .+.++|.++|+
T Consensus 1475 S------------------------------------------aLD~~te~~Iq~~L~~~~--~~~TvI~IAHR 1504 (1560)
T PTZ00243 1475 A------------------------------------------NIDPALDRQIQATVMSAF--SAYTVITIAHR 1504 (1560)
T ss_pred c------------------------------------------cCCHHHHHHHHHHHHHHC--CCCEEEEEecc
Confidence 4 344455567788888753 47899998855
No 347
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=2.3e-16 Score=143.20 Aligned_cols=156 Identities=20% Similarity=0.304 Sum_probs=110.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|+|||||++++.+-. .|+-|. .|. ..+. .......+.+|+++|+..|..+ .+.++++
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~--~~~-~~~~--~~~~~~~l~iwDt~G~~~~~~~-----~~~~~~~ 72 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFE--NYT-ASFE--IDEQRIELSLWDTSGSPYYDNV-----RPLCYPD 72 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEE--EEE-EEEE--ECCEEEEEEEEECCCchhhhhc-----chhhcCC
Confidence 68999999999999999997532 233222 121 1111 1234578999999999888776 5556777
Q ss_pred hh-hHHHHhcCCchhHHHH-HHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 96 TM-VMLVVSMTTPWNIIDE-LHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~-l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+. +++++|++++.+ ++. +..|...++++. |
T Consensus 73 a~~~ilvfdit~~~S-f~~~~~~w~~~i~~~~-------------------------------------------~---- 104 (178)
T cd04131 73 SDAVLICFDISRPET-LDSVLKKWRGEIQEFC-------------------------------------------P---- 104 (178)
T ss_pred CCEEEEEEECCChhh-HHHHHHHHHHHHHHHC-------------------------------------------C----
Confidence 66 478899999888 555 477865554332 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhh--------hcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCccc-HHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLE--------KDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKN-CDLLYKYL 243 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE--------~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n-~~~l~~~l 243 (415)
.+|+++||||+|+..... +.+.++.++ .+++|.++|+ .+++||||++.+ ++.+|..+
T Consensus 105 ------~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e-------~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~ 171 (178)
T cd04131 105 ------NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQ-------GCAIAKQLGAEIYLECSAFTSEKSVRDIFHVA 171 (178)
T ss_pred ------CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHH-------HHHHHHHhCCCEEEECccCcCCcCHHHHHHHH
Confidence 579999999999954210 111233333 7899999998 799999999996 99999999
Q ss_pred HHHH
Q psy13975 244 AHRL 247 (415)
Q Consensus 244 ~h~l 247 (415)
+...
T Consensus 172 ~~~~ 175 (178)
T cd04131 172 TMAC 175 (178)
T ss_pred HHHH
Confidence 7643
No 348
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.69 E-value=1.7e-16 Score=147.13 Aligned_cols=156 Identities=21% Similarity=0.377 Sum_probs=111.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQG-ID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G-l~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
.|+|+|+.|+|||||++++.. .+ .++.|. +|....+.. ......+.+|+++|+..|..+ ...++++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~--~~~~~~i~~--~~~~v~l~iwDtaGqe~~~~l-----~~~y~~~ 72 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGV--DFKIKTVEL--RGKKIRLQIWDTAGQERFNSI-----TSAYYRS 72 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCccee--EEEEEEEEE--CCEEEEEEEEeCCCchhhHHH-----HHHHhcC
Confidence 478999999999999999873 32 233333 232222211 223578899999999888777 4556667
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
+. +++++|.+++.+ ++.+..|...+++.. .+
T Consensus 73 ad~iIlVfDvtd~~S-f~~l~~w~~~i~~~~---------------------------------------------~~-- 104 (202)
T cd04120 73 AKGIILVYDITKKET-FDDLPKWMKMIDKYA---------------------------------------------SE-- 104 (202)
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHHHHHhC---------------------------------------------CC--
Confidence 66 478899999877 677777855433221 01
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh-CCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF-GAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~-Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+.. ++.+..++ ...+|.++ |..+++||||++.+++.+|++++..+..
T Consensus 105 -----~~piilVgNK~DL~~----~~~v~~~~-------~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 105 -----DAELLLVGNKLDCET----DREISRQQ-------GEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred -----CCcEEEEEECccccc----ccccCHHH-------HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999853 23343333 56677775 7889999999999999999999887764
No 349
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.68 E-value=3.9e-16 Score=165.53 Aligned_cols=46 Identities=28% Similarity=0.388 Sum_probs=43.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+.
T Consensus 18 ~~il~~is~~i~~G---e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~ 63 (552)
T TIGR03719 18 KEILKDISLSFFPG---AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR 63 (552)
T ss_pred CeeecCceEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 46899999999999 99999999999999999999999999999965
No 350
>KOG0055|consensus
Probab=99.68 E-value=5.5e-17 Score=178.41 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=105.9
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAH 80 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~ 80 (415)
+.+||+|+||+|.+| +.++||||+||||||.+.+|..+++|+.|.+. .++.++++..-.. +.+++++.+.+..+-
T Consensus 1002 ~~~Il~~l~l~i~~G---qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~-IDg~dik~lnl~~LR~~i~lVsQEP~LF~ 1077 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAG---QTVALVGPSGSGKSTVISLLERFYDPDAGKVK-IDGVDIKDLNLKWLRKQIGLVSQEPVLFN 1077 (1228)
T ss_pred CchhhcCCcEEecCC---CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE-ECCcccccCCHHHHHHhcceeccCchhhc
Confidence 346899999999999 99999999999999999999999999999977 6677776654322 345555544333333
Q ss_pred hhhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 81 SNLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 81 ~~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
..+.++.. ....+....++......+.++++..+- -+...+-+.-.+| |||||||++||||+.++|..++|||.+|
T Consensus 1078 ~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QL--SGGQKQRIAIARAilRnPkILLLDEATS 1155 (1228)
T KOG0055|consen 1078 GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQL--SGGQKQRIAIARAILRNPKILLLDEATS 1155 (1228)
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcC--CchHHHHHHHHHHHHcCCCeeeeeccch
Confidence 33322222 211244444555566666666665552 2222233333334 9999999999999999999999999877
Q ss_pred hcc
Q psy13975 159 FYL 161 (415)
Q Consensus 159 ~~~ 161 (415)
|.+
T Consensus 1156 ALD 1158 (1228)
T KOG0055|consen 1156 ALD 1158 (1228)
T ss_pred hhh
Confidence 443
No 351
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.68 E-value=2e-16 Score=156.99 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=96.1
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchhhHHHHh
Q psy13975 24 LISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTMVMLVVS 103 (415)
Q Consensus 24 IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d 103 (415)
|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ...++++...... .| .+.++...+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~-i~g~~i~~~~~-~~~~i~~v~q~~~-l~-------------~~~tv~enl~ 64 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIM-LDGEDVTNVPP-HLRHINMVFQSYA-LF-------------PHMTVEENVA 64 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEE-ECCEECCCCCH-HHCCEEEEecCcc-cc-------------CCCcHHHHHH
Confidence 6899999999999999999999999976 66655543221 1233444433211 11 1111111111
Q ss_pred c----CC---------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCC
Q psy13975 104 M----TT---------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIP 170 (415)
Q Consensus 104 ~----~~---------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL 170 (415)
+ .. ...+++.++. ...+++.+..| |+|||||++||||+..++..+++|||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~L--SgGq~qRvalaraL~~~p~lllLDEP-------------- 127 (325)
T TIGR01187 65 FGLKMRKVPRAEIKPRVLEALRLVQL-EEFADRKPHQL--SGGQQQRVALARALVFKPKILLLDEP-------------- 127 (325)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCC-cchhcCChhhC--CHHHHHHHHHHHHHHhCCCEEEEeCC--------------
Confidence 0 00 0112222222 12344555555 99999999999999987777777775
Q ss_pred CccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 171 GEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 171 ~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
..++|.+..+.+.+.|++++.+.|.+++++||.
T Consensus 128 ----------------------------~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 128 ----------------------------LSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred ----------------------------CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 346777888899999999988889999999953
No 352
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.68 E-value=2.2e-16 Score=183.50 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=114.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
.++|+|+||+|++| ++++|+|++|||||||++.|.|+++ .+|.++ +++.++....... +.++++..++...+-.
T Consensus 1232 ~~vL~~is~~I~~G---ekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~-IdG~di~~i~~~~lR~~is~IpQdp~LF~G 1306 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGG---QRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQ-IDGVSWNSVTLQTWRKAFGVIPQKVFIFSG 1306 (1490)
T ss_pred cceeeccEEEEcCC---CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEE-ECCEEcccCCHHHHHhceEEEeCCCccCcc
Confidence 46999999999999 9999999999999999999999987 789987 7788876654333 4455555433322222
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHH-------Hhh--hcCChhhHHHHHHHHHhhccccccc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDH-------IDS--LNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~-------~~~--L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
.+..++.+...+.+..+ |.+++..+.| +.+.+. +.. .+||+|||||++||||+.+++..++
T Consensus 1307 TIR~NLdp~~~~tdeei---------~~aL~~~~L~-~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILl 1376 (1490)
T TIGR01271 1307 TFRKNLDPYEQWSDEEI---------WKVAEEVGLK-SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL 1376 (1490)
T ss_pred CHHHHhCcccCCCHHHH---------HHHHHHCCCH-HHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEE
Confidence 22222111111222222 3334444443 222222 221 1369999999999999998888888
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+||+++ .+|.+--..|++.||+.. .+.+++.++|+
T Consensus 1377 LDEaTS------------------------------------------~lD~~Te~~I~~~L~~~~--~~~TvI~IaHR 1411 (1490)
T TIGR01271 1377 LDEPSA------------------------------------------HLDPVTLQIIRKTLKQSF--SNCTVILSEHR 1411 (1490)
T ss_pred EeCCcc------------------------------------------cCCHHHHHHHHHHHHHHc--CCCEEEEEecC
Confidence 888654 455556678888898864 47899999966
No 353
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.68 E-value=2.7e-16 Score=169.82 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=99.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc--
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-- 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-- 80 (415)
+.+|+++||+|++| ++++|+|+||||||||+++|+|+++|+.|.+. + + .+.++++ +.+++.+
T Consensus 465 ~~il~~isl~i~~G---e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~-~---~-------~~~~i~~--v~Q~~~l~~ 528 (659)
T TIGR00954 465 DVLIESLSFEVPSG---NHLLICGPNGCGKSSLFRILGELWPVYGGRLT-K---P-------AKGKLFY--VPQRPYMTL 528 (659)
T ss_pred CeeeecceEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEe-e---c-------CCCcEEE--ECCCCCCCC
Confidence 36899999999999 99999999999999999999999999999854 1 1 1223444 3333321
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcC--CchhHHHHHHhHHHHHHH---------HHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMT--TPWNIIDELHNWASVLQD---------HIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~--~p~~~l~~l~~w~~~l~~---------~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
..+............. ..-+.. +.+.+++.++.. +.+++ .... ||+|||||++||||+..+|.
T Consensus 529 ~tv~eni~~~~~~~~~---~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~~~~~~~~~~--LSgGqkQRl~iARal~~~p~ 602 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDM---KRRGLSDKDLEQILDNVQLT-HILEREGGWSAVQDWMDV--LSGGEKQRIAMARLFYHKPQ 602 (659)
T ss_pred cCHHHHHhcCCChhhh---hccCCCHHHHHHHHHHcCCH-HHHhhcCCcccccccccC--CCHHHHHHHHHHHHHHcCCC
Confidence 1121111111000000 000000 011223333321 22222 1233 49999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||++ ++|.+..+.+.+.+++ .|.+++.+|
T Consensus 603 illLDEpts------------------------------------------~LD~~~~~~l~~~l~~----~~~tvI~is 636 (659)
T TIGR00954 603 FAILDECTS------------------------------------------AVSVDVEGYMYRLCRE----FGITLFSVS 636 (659)
T ss_pred EEEEeCCcc------------------------------------------CCCHHHHHHHHHHHHH----cCCEEEEEe
Confidence 888888644 4555555555555543 599999999
Q ss_pred cCC
Q psy13975 230 AKE 232 (415)
Q Consensus 230 ~k~ 232 (415)
|..
T Consensus 637 H~~ 639 (659)
T TIGR00954 637 HRK 639 (659)
T ss_pred Cch
Confidence 664
No 354
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.66 E-value=3.7e-16 Score=157.45 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=89.2
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AH 80 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~ 80 (415)
.+++|+++||++.+| +.++||||+|||||||.|.|.|...|..|.+. +++.++..++.+..-+ +|.+++++- .|
T Consensus 348 ~~pil~~isF~l~~G---~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR-LDga~l~qWd~e~lG~-hiGYLPQdVeLF 422 (580)
T COG4618 348 KKPILKGISFALQAG---EALGIIGPSGSGKSTLARLLVGIWPPTSGSVR-LDGADLRQWDREQLGR-HIGYLPQDVELF 422 (580)
T ss_pred CCcceecceeEecCC---ceEEEECCCCccHHHHHHHHHcccccCCCcEE-ecchhhhcCCHHHhcc-ccCcCcccceec
Confidence 358999999999999 99999999999999999999999999999966 7777777766554322 344444332 12
Q ss_pred hh-hhhhccCCCCCCchhhHHHHh-cCCchhHHHHHHhHHHHHHHHHhhh-------------cCChhhHHHHHHHHHhh
Q psy13975 81 SN-LLRFALNQETLPHTMVMLVVS-MTTPWNIIDELHNWASVLQDHIDSL-------------NIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 81 ~~-Ll~~~l~~~~~~~~~v~~~~d-~~~p~~~l~~l~~w~~~l~~~~~~L-------------~lSgGekQRl~LArAl~ 145 (415)
.. +-++.. .++ -.++..+++..+. ..+++.+-.| .||+|||||++||||+.
T Consensus 423 ~GTIaeNIa------------Rf~~~~d~~kIieAA~l--AgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY 488 (580)
T COG4618 423 DGTIAENIA------------RFGEEADPEKVIEAARL--AGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY 488 (580)
T ss_pred CCcHHHHHH------------hccccCCHHHHHHHHHH--cChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHc
Confidence 11 111110 011 1123333333222 1222222222 25999999999999999
Q ss_pred cccccccchhhh
Q psy13975 146 FARLRAHLIELL 157 (415)
Q Consensus 146 ~~~~~~~lde~~ 157 (415)
-+|..+.+|||.
T Consensus 489 G~P~lvVLDEPN 500 (580)
T COG4618 489 GDPFLVVLDEPN 500 (580)
T ss_pred CCCcEEEecCCC
Confidence 666666667663
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.66 E-value=5.5e-16 Score=161.77 Aligned_cols=47 Identities=32% Similarity=0.494 Sum_probs=44.5
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
++.+|+++||+|.+| +++||||.|||||||||++|+|...|+.|.+.
T Consensus 15 ~~~l~~~~~l~~~~G---~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~ 61 (530)
T COG0488 15 DRPLLENVSLTLNPG---ERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61 (530)
T ss_pred CceeecCCcceeCCC---CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEe
Confidence 567999999999999 99999999999999999999999999999864
No 356
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=4.9e-16 Score=146.85 Aligned_cols=160 Identities=19% Similarity=0.274 Sum_probs=113.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-C----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-D----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|||+.|+|||+|++++.+- + .|+-|. .|. ..+. .......+.+|+++|+..|..+ .+.++.
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~--~~~-~~i~--~~~~~v~l~iwDTaG~e~~~~~-----~~~~~~ 83 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE--NYT-AGLE--TEEQRVELSLWDTSGSPYYDNV-----RPLCYS 83 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceee--eeE-EEEE--ECCEEEEEEEEeCCCchhhHHH-----HHHHcC
Confidence 47899999999999999998742 2 233332 221 1111 1234578999999999888777 444666
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
++. +++++|++++.++-..+..|...+.+.. |
T Consensus 84 ~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-------------------------------------------~---- 116 (232)
T cd04174 84 DSDAVLLCFDISRPETVDSALKKWKAEIMDYC-------------------------------------------P---- 116 (232)
T ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-------------------------------------------C----
Confidence 766 4788999998874333577865544321 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhh--------hcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcc-cHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLE--------KDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDK-NCDLLYKYL 243 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE--------~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~-n~~~l~~~l 243 (415)
++|+++|+||+|+.+... +.+.+..++ .+.+|.++|+ .+++||||++. +++.+|..+
T Consensus 117 ------~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e-------~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~ 183 (232)
T cd04174 117 ------STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQ-------GCALAKQLGAEVYLECSAFTSEKSIHSIFRSA 183 (232)
T ss_pred ------CCCEEEEEECcccccccchhhhhccccCCcCCHHH-------HHHHHHHcCCCEEEEccCCcCCcCHHHHHHHH
Confidence 579999999999854211 112333333 7899999999 69999999997 899999999
Q ss_pred HHHHhC
Q psy13975 244 AHRLYG 249 (415)
Q Consensus 244 ~h~l~~ 249 (415)
+..++.
T Consensus 184 ~~~~~~ 189 (232)
T cd04174 184 SLLCLN 189 (232)
T ss_pred HHHHHH
Confidence 887765
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.66 E-value=1.3e-16 Score=169.63 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=104.4
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE----------eceeecCCCCcc-ccceEEEE
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALE----------YAYINVSDEYRE-DHTRLGVW 72 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~----------~~~~~v~~~~~~-~~~~l~i~ 72 (415)
.+|++++ .+.+| ++++|+|+||||||||+++|+|+.+|+.|.+.. |.+.++...... ...+..+.
T Consensus 88 ~~L~~l~-~i~~G---ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 88 FKLYGLP-IPKEG---KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred eeEecCC-cCCCC---CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 4799999 89999 999999999999999999999999999999531 222222110000 00011111
Q ss_pred EecCcccchhhhhhccCCCCCCchhhHHHHhcCC----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 73 ILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTT----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 73 ~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
...+.. .. .+..+.. .+...+.... ...+++.++. ...+++.+..| |+||+||++||+|+..++
T Consensus 164 ~~~q~~---~~-----~p~~~~~-tv~e~l~~~~~~~~~~~~l~~l~l-~~~~~~~~~~L--SgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 164 HKPQYV---DL-----IPKVFKG-KVRELLKKVDERGKLDEVVERLGL-ENILDRDISEL--SGGELQRVAIAAALLRDA 231 (590)
T ss_pred ecccch---hh-----hhhhhcc-hHHHHHHhhhHHHHHHHHHHHcCC-chhhcCChhhC--CHHHHHHHHHHHHHhcCC
Confidence 111100 00 0000111 2222221111 1223444444 23445666666 999999999999999877
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++|||+ .++|......+.+.|++++. |.+++++
T Consensus 232 ~lllLDEPt------------------------------------------s~LD~~~~~~l~~~i~~l~~--g~tvIiv 267 (590)
T PRK13409 232 DFYFFDEPT------------------------------------------SYLDIRQRLNVARLIRELAE--GKYVLVV 267 (590)
T ss_pred CEEEEECCC------------------------------------------CCCCHHHHHHHHHHHHHHHC--CCEEEEE
Confidence 777777764 46667778888888888864 8888888
Q ss_pred ccC
Q psy13975 229 SAK 231 (415)
Q Consensus 229 S~k 231 (415)
||.
T Consensus 268 sHd 270 (590)
T PRK13409 268 EHD 270 (590)
T ss_pred eCC
Confidence 854
No 358
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.66 E-value=8e-16 Score=139.53 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=110.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQ-GID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~-Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|+|||+|+.++. |.. .|+-|.. | ...+.. .....++.+|++.|+..|..+ ...++++
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~--~-~~~~~~--~~~~v~l~i~Dt~G~~~~~~~-----~~~~~~~ 72 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN--F-SANVSV--DGNTVNLGLWDTAGQEDYNRL-----RPLSYRG 72 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceee--e-EEEEEE--CCEEEEEEEEECCCCcccccc-----chhhcCC
Confidence 68999999999999999997 332 2333321 2 112211 224578899999999988877 5556777
Q ss_pred hh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 96 TM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
.. +++++|++++.+ ++.+ ..|...+++.. +
T Consensus 73 a~~~ilvyd~~~~~S-f~~~~~~w~~~i~~~~----------------------------------------------~- 104 (176)
T cd04133 73 ADVFVLAFSLISRAS-YENVLKKWVPELRHYA----------------------------------------------P- 104 (176)
T ss_pred CcEEEEEEEcCCHHH-HHHHHHHHHHHHHHhC----------------------------------------------C-
Confidence 66 478999999888 5555 67855443221 0
Q ss_pred ccccccCCcEEEEEeCcchhhhhh-----h-cccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLE-----K-DFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE-----~-~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~ 246 (415)
.+|+++||||+|+.+.-. + .+.+..+ ....+|.++|+ .+++||||++.|++.+|+.++..
T Consensus 105 ------~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~-------~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 105 ------NVPIVLVGTKLDLRDDKQYLADHPGASPITTA-------QGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred ------CCCEEEEEeChhhccChhhhhhccCCCCCCHH-------HHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 689999999999954200 0 0123333 36788999998 59999999999999999999876
Q ss_pred Hh
Q psy13975 247 LY 248 (415)
Q Consensus 247 l~ 248 (415)
+.
T Consensus 172 ~~ 173 (176)
T cd04133 172 VL 173 (176)
T ss_pred Hh
Confidence 53
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=99.65 E-value=3.3e-16 Score=169.82 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
.+|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. +.. ..+++++.+. . +..+
T Consensus 523 ~il~~vsl~i~~G---e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~-~~~----------~~~igyv~Q~--~-~~~l 585 (718)
T PLN03073 523 LLFKNLNFGIDLD---SRIAMVGPNGIGKSTILKLISGELQPSSGTVF-RSA----------KVRMAVFSQH--H-VDGL 585 (718)
T ss_pred eeEeccEEEEcCC---CEEEEECCCCCcHHHHHHHHhCCCCCCCceEE-ECC----------ceeEEEEecc--c-cccC
Confidence 4899999999999 99999999999999999999999999999964 211 1244544332 1 1011
Q ss_pred hhhccCCCCCCchhhHHHHh-cCC-----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 84 LRFALNQETLPHTMVMLVVS-MTT-----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~d-~~~-----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
............ ... ...+++.+.......++.+..| |+|||||++|||++..++..+++|||+
T Consensus 586 --------~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~L--SgGqkqRvaLAraL~~~p~lLLLDEPT 655 (718)
T PLN03073 586 --------DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL--SGGQKSRVAFAKITFKKPHILLLDEPS 655 (718)
T ss_pred --------CcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCcccc--CHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 000000000000 000 1123333333112344555666 999999999999999888888888764
Q ss_pred h
Q psy13975 158 S 158 (415)
Q Consensus 158 s 158 (415)
+
T Consensus 656 ~ 656 (718)
T PLN03073 656 N 656 (718)
T ss_pred C
Confidence 3
No 360
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65 E-value=7.7e-16 Score=136.92 Aligned_cols=155 Identities=19% Similarity=0.339 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CCCCCC--CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQ-GIDSPE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~-Gl~~p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|++|+|||||++++. |.+.+. ++.+.++....+.. ......+.+|++.|+..+..+ ...++.+..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~g~~~~~~~-----~~~~~~~~~ 74 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV--DGIKVRIQIWDTAGQERYQTI-----TKQYYRRAQ 74 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEeCCCcHhHHhh-----HHHHhcCCc
Confidence 58999999999999998876 433332 22222222112211 123467899999998877666 333444544
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|++++.+ ++.+..|.+.+..... .
T Consensus 75 ~~i~v~d~~~~~s-f~~~~~~~~~~~~~~~---------------------------------------------~---- 104 (161)
T cd04117 75 GIFLVYDISSERS-YQHIMKWVSDVDEYAP---------------------------------------------E---- 104 (161)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhCC---------------------------------------------C----
Confidence 467889888776 6666777544432210 1
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
.+|+++|+||+|+.+. +.+.+++ .+.++..++..+++||+|++.|++.+|+.|+.+
T Consensus 105 ---~~~iilvgnK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 105 ---GVQKILIGNKADEEQK----RQVGDEQ-------GNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ---CCeEEEEEECcccccc----cCCCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 6899999999998532 3333333 567777888999999999999999999998754
No 361
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.65 E-value=9.5e-16 Score=136.12 Aligned_cols=156 Identities=22% Similarity=0.364 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|||||||++++.+-. .|+.| ..+....+.. ......+.+|+++|...+..+. ...+.
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~-----~~~~~ 74 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIG--VEFATRSIQI--DGKTIKAQIWDTAGQERYRAIT-----SAYYR 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--eEEEEEEEEE--CCEEEEEEEEeCCChHHHHHHH-----HHHHC
Confidence 378999999999999999998532 23333 2233322221 1234578899999988776663 33344
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
.+. +++++|.+++.+ ++.+..|...+.+...
T Consensus 75 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 106 (165)
T cd01868 75 GAVGALLVYDITKKQT-FENVERWLKELRDHAD----------------------------------------------- 106 (165)
T ss_pred CCCEEEEEEECcCHHH-HHHHHHHHHHHHHhCC-----------------------------------------------
Confidence 455 577889888766 5666667544433220
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+... +....++ ++.+|.+.+..++++|++++.+++.+++.++.++|
T Consensus 107 -----~~~pi~vv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 165 (165)
T cd01868 107 -----SNIVIMLVGNKSDLRHL----RAVPTEE-------AKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165 (165)
T ss_pred -----CCCeEEEEEECcccccc----ccCCHHH-------HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 16899999999998642 2233322 56667778889999999999999999999988765
No 362
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=2.4e-16 Score=137.50 Aligned_cols=179 Identities=13% Similarity=0.135 Sum_probs=111.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEece--eecCCCCcc-----ccceEEEEEec
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAY--INVSDEYRE-----DHTRLGVWILD 75 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~--~~v~~~~~~-----~~~~l~i~~l~ 75 (415)
..+|-|++|+.+.| +.++++||+|+|||||+|.|.=++-|.+|... +.+ +|......+ -+..+|++++.
T Consensus 15 ~q~lfdi~l~~~~g---etlvllgpsgagkssllr~lnlle~p~sg~l~-ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq 90 (242)
T COG4161 15 HQALFDITLDCPEG---ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN-IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90 (242)
T ss_pred chheeeeeecCCCC---CEEEEECCCCCchHHHHHHHHHHhCCCCCeEE-ecccccccccCccHHHHHHHHHhhhhhhhh
Confidence 46799999999999 99999999999999999999988999999843 222 122111111 12233333221
Q ss_pred CcccchhhhhhccCCCCCCchhhHHHH--------hcCCc------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHH
Q psy13975 76 GEPAHSNLLRFALNQETLPHTMVMLVV--------SMTTP------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141 (415)
Q Consensus 76 g~~~~~~Ll~~~l~~~~~~~~~v~~~~--------d~~~p------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LA 141 (415)
.. .+++.+|+..+ .+++. ..++..+.+ ....+++.- .|||||+||++||
T Consensus 91 y~--------------lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl-~~~adr~pl--hlsggqqqrvaia 153 (242)
T COG4161 91 YN--------------LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRL-KPYADRYPL--HLSGGQQQRVAIA 153 (242)
T ss_pred hc--------------cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcc-ccccccCce--ecccchhhhHHHH
Confidence 11 23333333221 12211 122333332 233344443 3499999999999
Q ss_pred HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh
Q psy13975 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF 221 (415)
Q Consensus 142 rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~ 221 (415)
||+..+|..+++|||++ .+++|-...+...+++++. .
T Consensus 154 ralmmkpqvllfdepta------------------------------------------aldpeitaqvv~iikel~~-t 190 (242)
T COG4161 154 RALMMEPQVLLFDEPTA------------------------------------------ALDPEITAQIVSIIKELAE-T 190 (242)
T ss_pred HHHhcCCcEEeecCccc------------------------------------------ccCHHHHHHHHHHHHHHHh-c
Confidence 99997777777777643 4556667777777888764 5
Q ss_pred CCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 222 GAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 222 Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
|++-+.++ +.++..++...|-+|.
T Consensus 191 gitqvivt----hev~va~k~as~vvym 214 (242)
T COG4161 191 GITQVIVT----HEVEVARKTASRVVYM 214 (242)
T ss_pred CceEEEEE----eehhHHHhhhhheEee
Confidence 77766555 5566666666666554
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.65 E-value=4.7e-16 Score=179.49 Aligned_cols=172 Identities=8% Similarity=-0.047 Sum_probs=108.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP 78 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~ 78 (415)
+.+|+|+|+.+++| +.++|+|+|||||||||++|+|+. .|.+|.+. |.+.++.......+..+++. .++.
T Consensus 74 ~~iL~~vs~~i~~G---e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~-~~G~~~~~~~~~~r~~i~yv--~Q~d 147 (1394)
T TIGR00956 74 FDILKPMDGLIKPG---ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVIT-YDGITPEEIKKHYRGDVVYN--AETD 147 (1394)
T ss_pred ceeeeCCEEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEE-ECCEehHHHHhhcCceeEEe--cccc
Confidence 46999999999999 999999999999999999999985 46889976 66655432111112223333 3221
Q ss_pred -cchhhhhhccCCCCCCchhhHHHHhcCCc---------h--------hHHHHHHhHHHHHHHHHhh---hcCChhhHHH
Q psy13975 79 -AHSNLLRFALNQETLPHTMVMLVVSMTTP---------W--------NIIDELHNWASVLQDHIDS---LNIGAHDYQA 137 (415)
Q Consensus 79 -~~~~Ll~~~l~~~~~~~~~v~~~~d~~~p---------~--------~~l~~l~~w~~~l~~~~~~---L~lSgGekQR 137 (415)
.+..+ ...+...+ ...+..| . .+++.++.. +..+..+.. -+||||||||
T Consensus 148 ~~~~~l--------TV~E~l~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerkR 217 (1394)
T TIGR00956 148 VHFPHL--------TVGETLDF-AARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-HTRNTKVGNDFVRGVSGGERKR 217 (1394)
T ss_pred ccCCCC--------CHHHHHHH-HHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-cccCceeCCCcCCCCCcccchH
Confidence 12111 11111100 0000000 0 111222220 111111100 1359999999
Q ss_pred HHHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHH
Q psy13975 138 GRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKF 217 (415)
Q Consensus 138 l~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l 217 (415)
|.||+++..++..+.+||| +.++|......+.+.||++
T Consensus 218 vsIA~aL~~~p~vlllDEP------------------------------------------TsgLD~~~~~~i~~~L~~l 255 (1394)
T TIGR00956 218 VSIAEASLGGAKIQCWDNA------------------------------------------TRGLDSATALEFIRALKTS 255 (1394)
T ss_pred HHHHHHHHhCCCEEEEeCC------------------------------------------CCCcCHHHHHHHHHHHHHH
Confidence 9999999977777666765 4577778888899999999
Q ss_pred HHHhCCeEEEeccCC
Q psy13975 218 CLKFGAGLFYTSAKE 232 (415)
Q Consensus 218 ~~~~Gasli~tS~k~ 232 (415)
+.+.|.+++.++|..
T Consensus 256 a~~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 256 ANILDTTPLVAIYQC 270 (1394)
T ss_pred HHhcCCEEEEEecCC
Confidence 988899999998654
No 364
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.65 E-value=9.4e-16 Score=165.09 Aligned_cols=46 Identities=28% Similarity=0.432 Sum_probs=43.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+.+|+||||+|.+| ++++|+|+||||||||+++|+|+..|+.|.+.
T Consensus 16 ~~il~~is~~i~~G---e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~ 61 (635)
T PRK11147 16 APLLDNAELHIEDN---ERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61 (635)
T ss_pred ceeEeCcEEEECCC---CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence 46899999999999 99999999999999999999999999999965
No 365
>KOG0095|consensus
Probab=99.64 E-value=2.2e-16 Score=134.99 Aligned_cols=161 Identities=23% Similarity=0.340 Sum_probs=128.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchhh-
Q psy13975 21 NILLISDNSSGKTTLIAKLQ-GIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTMV- 98 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~-Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v- 98 (415)
+++++|..|+|||+|+++++ |+++|..|..++.++.-.......+..++.||++.|++.|+++ ++.+|+....
T Consensus 9 kivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsi-----tqsyyrsahal 83 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSI-----TQSYYRSAHAL 83 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHH-----HHHHhhhcceE
Confidence 68899999999999999996 9999987765544443222233456789999999999999999 8888887774
Q ss_pred HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccccc
Q psy13975 99 MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERN 178 (415)
Q Consensus 99 ~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~n 178 (415)
++++|++...+ ++-+-.|...++++...
T Consensus 84 ilvydiscqps-fdclpewlreie~yan~--------------------------------------------------- 111 (213)
T KOG0095|consen 84 ILVYDISCQPS-FDCLPEWLREIEQYANN--------------------------------------------------- 111 (213)
T ss_pred EEEEecccCcc-hhhhHHHHHHHHHHhhc---------------------------------------------------
Confidence 67889887445 78888898887777642
Q ss_pred cCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 179 LGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 179 lgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
-+--++|+||.|+.+ +++.-+|..+.|...+..-+++||+|+..|++.||..+.-++.+-
T Consensus 112 -kvlkilvgnk~d~~d-----------rrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 112 -KVLKILVGNKIDLAD-----------RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISE 171 (213)
T ss_pred -ceEEEeeccccchhh-----------hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 344588999999964 345556778999998888999999999999999999999998863
No 366
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=1.1e-15 Score=136.24 Aligned_cols=159 Identities=16% Similarity=0.248 Sum_probs=108.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-CCCC--CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-DSPE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~~p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+.|+|||||++++.+- +.+. ...+..+....+.. .....++.+|+++|...|..+ ....+++.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~~ 75 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV--NGQKIKLQIWDTAGQERFRAV-----TRSYYRGA 75 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE--CCEEEEEEEEECCCcHHHHHH-----HHHHhcCC
Confidence 36899999999999999999743 2111 11112222111111 223467899999998877666 33345555
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|++++.+ ++.+..|...+.... .+
T Consensus 76 ~~~ilv~d~~~~~s-~~~~~~~~~~~~~~~---------------------------------------------~~--- 106 (166)
T cd04122 76 AGALMVYDITRRST-YNHLSSWLTDARNLT---------------------------------------------NP--- 106 (166)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHHHHhC---------------------------------------------CC---
Confidence 5 578899998876 666777744332211 01
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
..|+++|+||+|+... +.+..++ ++.+|.+++..+++||++++.|++.+|..+++.++.
T Consensus 107 ----~~~iiiv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 107 ----NTVIFLIGNKADLEAQ----RDVTYEE-------AKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred ----CCeEEEEEECcccccc----cCcCHHH-------HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 6799999999999532 2333333 677888889999999999999999999999988764
No 367
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.64 E-value=1.4e-15 Score=139.35 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=110.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-CC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-ID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+.++.. .+ .|+-|. .|. ..+. . ......+.+|+++|+..|..+ .+.+++
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~--~~~-~~~~-~-~~~~~~l~i~Dt~G~e~~~~l-----~~~~~~ 73 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD--NYS-AQTA-V-DGRTVSLNLWDTAGQEEYDRL-----RTLSYP 73 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe--eeE-EEEE-E-CCEEEEEEEEECCCchhhhhh-----hhhhcc
Confidence 5799999999999999999874 22 233332 121 1111 1 223577899999999988877 555666
Q ss_pred chhh-HHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTMV-MLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~v-~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
++.+ ++++|++++.+ ++.+. .|...+.... +
T Consensus 74 ~a~~~ilvydit~~~S-f~~~~~~w~~~i~~~~-------------------------------------------~--- 106 (191)
T cd01875 74 QTNVFIICFSIASPSS-YENVRHKWHPEVCHHC-------------------------------------------P--- 106 (191)
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhC-------------------------------------------C---
Confidence 7664 67899999887 66664 5744332211 1
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhc--------ccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKD--------FYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~--------~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l 243 (415)
++|+++|+||+|+....+.. +.++++ ..+.+|.++|+ .+++|||+++.|++.+|+.+
T Consensus 107 -------~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~-------~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l 172 (191)
T cd01875 107 -------NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQ-------QGGALAKQIHAVKYLECSALNQDGVKEVFAEA 172 (191)
T ss_pred -------CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHH-------HHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHH
Confidence 68999999999995421100 112222 36789999995 89999999999999999999
Q ss_pred HHHHhC
Q psy13975 244 AHRLYG 249 (415)
Q Consensus 244 ~h~l~~ 249 (415)
++.++.
T Consensus 173 ~~~~~~ 178 (191)
T cd01875 173 VRAVLN 178 (191)
T ss_pred HHHHhc
Confidence 988765
No 368
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=1.6e-15 Score=140.06 Aligned_cols=163 Identities=20% Similarity=0.357 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC-CC--CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI-DS--PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl-~~--p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|+|||||++++.+- .. ...+.+.+|....+. ........+.+|+++|...|..+ ...++.++.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~-~~~~~~~~l~l~Dt~G~~~~~~~-----~~~~~~~a~ 75 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIE-WDPNTVVRLQLWDIAGQERFGGM-----TRVYYRGAV 75 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEE-ECCCCEEEEEEEECCCchhhhhh-----HHHHhCCCC
Confidence 6899999999999999998753 21 112222222221121 11124567889999998877766 334455666
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|.+++.+ ++.+..|...++..+.. +-
T Consensus 76 ~~ilv~D~t~~~s-~~~~~~~~~~i~~~~~~-----------------------------------------~~------ 107 (201)
T cd04107 76 GAIIVFDVTRPST-FEAVLKWKADLDSKVTL-----------------------------------------PN------ 107 (201)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhhcc-----------------------------------------cC------
Confidence 467899998877 67777886655544311 00
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-CeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-AGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-asli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
...+|++||+||+|+.. .+....++ ++.+|..+| ..+++||++++.+++.+++.|+..++.
T Consensus 108 -~~~~piilv~NK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 108 -GEPIPCLLLANKCDLKK----RLAKDGEQ-------MDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred -CCCCcEEEEEECCCccc----ccccCHHH-------HHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 11789999999999963 12333333 678888899 689999999999999999999988875
No 369
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.64 E-value=1.1e-15 Score=164.00 Aligned_cols=175 Identities=12% Similarity=0.041 Sum_probs=110.5
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeecCCCCccccceEEEEEecCcc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE---KGLALEYAYINVSDEYREDHTRLGVWILDGEP 78 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~---~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~ 78 (415)
.+.+|+|+|++|++| +.++|+|+|||||||||++|+|..++. .|++. +++.++.. ...+..+++. .++.
T Consensus 37 ~~~iL~~vs~~i~~G---e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~-~~g~~~~~--~~~~~~i~yv--~Q~~ 108 (617)
T TIGR00955 37 RKHLLKNVSGVAKPG---ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVL-LNGMPIDA--KEMRAISAYV--QQDD 108 (617)
T ss_pred ccccccCCEEEEeCC---eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE-ECCEECCH--HHHhhhceee--cccc
Confidence 357999999999999 999999999999999999999988774 67755 55544321 1112233443 3322
Q ss_pred c-chhhhhhccCCCCCCchhhHH-HHhcCC----------chhHHHHHHhHHHHHHHHHhh----hcCChhhHHHHHHHH
Q psy13975 79 A-HSNLLRFALNQETLPHTMVML-VVSMTT----------PWNIIDELHNWASVLQDHIDS----LNIGAHDYQAGRCCK 142 (415)
Q Consensus 79 ~-~~~Ll~~~l~~~~~~~~~v~~-~~d~~~----------p~~~l~~l~~w~~~l~~~~~~----L~lSgGekQRl~LAr 142 (415)
. +..+ ++.+..... .+.... ...+++.++. .+..+..+.. -+||+|||||+.|||
T Consensus 109 ~~~~~l--------TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~t~vg~~~~~~~LSgGqrkRvsia~ 179 (617)
T TIGR00955 109 LFIPTL--------TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL-RKCANTRIGVPGRVKGLSGGERKRLAFAS 179 (617)
T ss_pred ccCccC--------cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCc-hhcCcCccCCCCCCCCcCcchhhHHHHHH
Confidence 1 1111 111111100 000000 1122333333 1222333332 136999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
++..++..+.+||| +.++|......+.+.|++++. .|
T Consensus 180 aL~~~p~vlllDEP------------------------------------------tsgLD~~~~~~l~~~L~~l~~-~g 216 (617)
T TIGR00955 180 ELLTDPPLLFCDEP------------------------------------------TSGLDSFMAYSVVQVLKGLAQ-KG 216 (617)
T ss_pred HHHcCCCEEEeeCC------------------------------------------CcchhHHHHHHHHHHHHHHHh-CC
Confidence 99977777666765 356777778889999999986 49
Q ss_pred CeEEEeccCCcccH
Q psy13975 223 AGLFYTSAKEDKNC 236 (415)
Q Consensus 223 asli~tS~k~~~n~ 236 (415)
.+++.++|.....+
T Consensus 217 ~tvi~~~hq~~~~i 230 (617)
T TIGR00955 217 KTIICTIHQPSSEL 230 (617)
T ss_pred CEEEEEeCCCCHHH
Confidence 99999997654333
No 370
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.64 E-value=2.1e-15 Score=135.98 Aligned_cols=159 Identities=23% Similarity=0.315 Sum_probs=108.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-C----CCCCcEEEEeceeecCCC--------CccccceEEEEEecCcccchhhhhh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-D----SPEKGLALEYAYINVSDE--------YREDHTRLGVWILDGEPAHSNLLRF 86 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~----~p~~G~il~~~~~~v~~~--------~~~~~~~l~i~~l~g~~~~~~Ll~~ 86 (415)
-+++|+|+.|||||||++++.+- . .++.| .++....+... .......+.+|+++|+..|..+
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--- 79 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVG--IDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL--- 79 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccc--eEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH---
Confidence 47899999999999999999742 2 22222 22221111100 0123467889999998877666
Q ss_pred ccCCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCc
Q psy13975 87 ALNQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSS 165 (415)
Q Consensus 87 ~l~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~ 165 (415)
....+.++. +++++|.+++.+ +..+..|...+.....
T Consensus 80 --~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~--------------------------------------- 117 (180)
T cd04127 80 --TTAFFRDAMGFLLIFDLTNEQS-FLNVRNWMSQLQTHAY--------------------------------------- 117 (180)
T ss_pred --HHHHhCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC---------------------------------------
Confidence 333455555 467889888777 5666677544433210
Q ss_pred cccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHH
Q psy13975 166 VSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 166 ~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h 245 (415)
.+ ++|+++|+||+|+... +.+..++ ++.+|.++|..++++|++++.+++.+++.|.+
T Consensus 118 -----~~-------~~piiiv~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 118 -----CE-------NPDIVLCGNKADLEDQ----RQVSEEQ-------AKALADKYGIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred -----CC-------CCcEEEEEeCccchhc----CccCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 01 6799999999999642 2333333 67788889999999999999999999999988
Q ss_pred HHh
Q psy13975 246 RLY 248 (415)
Q Consensus 246 ~l~ 248 (415)
.++
T Consensus 175 ~~~ 177 (180)
T cd04127 175 LVM 177 (180)
T ss_pred HHH
Confidence 775
No 371
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.63 E-value=1.6e-15 Score=136.60 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=108.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-CC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-ID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++.+.+ .. .|+.|.. |. ..+.. ......+.+|+++|...|..+ ...++.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~--~~-~~~~~--~~~~~~l~i~Dt~G~~~~~~l-----~~~~~~ 72 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDA--YK-QQARI--DNEPALLDILDTAGQAEFTAM-----RDQYMR 72 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccce--EE-EEEEE--CCEEEEEEEEeCCCchhhHHH-----hHHHhh
Confidence 4789999999999999998863 32 2333321 11 11111 123457889999998887776 334455
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+... ..
T Consensus 73 ~~d~~ilv~d~~~~~S-f~~~~~~~~~i~~~~~--------------------------------------------~~- 106 (172)
T cd04141 73 CGEGFIICYSVTDRHS-FQEASEFKKLITRVRL--------------------------------------------TE- 106 (172)
T ss_pred cCCEEEEEEECCchhH-HHHHHHHHHHHHHhcC--------------------------------------------CC-
Confidence 555 467889888777 5666666444433210 01
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+.. .+.++.++ .+.+|.++++.+++|||+++.|++.+|+.++..++.
T Consensus 107 ------~~piilvgNK~Dl~~----~~~v~~~~-------~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 107 ------DIPLVLVGNKVDLES----QRQVTTEE-------GRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred ------CCCEEEEEEChhhhh----cCccCHHH-------HHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 689999999999853 23344444 567888889999999999999999999999988774
No 372
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=2.3e-15 Score=137.71 Aligned_cols=166 Identities=17% Similarity=0.265 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
++++|+|++|+|||||++++.+-. .|+.+. .|. ..+.. ......+.+|++.|+..|..+ ...++.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~--~~~-~~i~~--~~~~~~l~i~Dt~G~~~~~~l-----~~~~~~ 70 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFE--NYV-HDIFV--DGLHIELSLWDTAGQEEFDRL-----RSLSYA 70 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCccee--eeE-EEEEE--CCEEEEEEEEECCCChhcccc-----cccccc
Confidence 478999999999999999997532 222222 121 11111 123467899999998877666 445666
Q ss_pred chh-hHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
... +++++|++++.+ ++.+. .|...+.... +
T Consensus 71 ~a~~~ilv~dv~~~~s-f~~~~~~~~~~i~~~~-------------------------------------------~--- 103 (189)
T cd04134 71 DTDVIMLCFSVDSPDS-LENVESKWLGEIREHC-------------------------------------------P--- 103 (189)
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC-------------------------------------------C---
Confidence 665 467899998877 45443 4644332211 1
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCCh-hhHHHHHHHHHHHHHHhC-CeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKE-EHFDFVQQYIRKFCLKFG-AGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~-e~~d~i~q~LR~l~~~~G-asli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+....+.+..... .....-....+.+|.+++ +.+++||||++.+++.+|.+++..+++
T Consensus 104 -------~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 104 -------GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred -------CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 7899999999999653211100000 000001122566777787 579999999999999999999988875
No 373
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.63 E-value=1.5e-15 Score=134.34 Aligned_cols=155 Identities=23% Similarity=0.349 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|+|||||++++.+. ..++.|.- +....+.. .+....+.+|++.|+..|..+.. ..+.+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~l~i~D~~g~~~~~~~~~-----~~~~~ 71 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGID--SYSKEVSI--DGKPVNLEIWDTSGQERFDSLRD-----IFYRN 71 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEE--EEEEEEEE--TTEEEEEEEEEETTSGGGHHHHH-----HHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccc--cccccccc--ccccccccccccccccccccccc-----ccccc
Confidence 5899999999999999998743 22333331 22222221 24567899999999887766522 22344
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|+.++.+ ++.+..|...+.+...
T Consensus 72 ~~~~ii~fd~~~~~S-~~~~~~~~~~i~~~~~------------------------------------------------ 102 (162)
T PF00071_consen 72 SDAIIIVFDVTDEES-FENLKKWLEEIQKYKP------------------------------------------------ 102 (162)
T ss_dssp ESEEEEEEETTBHHH-HHTHHHHHHHHHHHST------------------------------------------------
T ss_pred ccccccccccccccc-cccccccccccccccc------------------------------------------------
Confidence 44 467889888777 6777788665554431
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
-++|++||++|+|+.+ .+.++.++ ++.+|.+++..++++|++++.+++.+|..+++.++
T Consensus 103 ----~~~~iivvg~K~D~~~----~~~v~~~~-------~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 103 ----EDIPIIVVGNKSDLSD----EREVSVEE-------AQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp ----TTSEEEEEEETTTGGG----GSSSCHHH-------HHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ----ccccceeeeccccccc----cccchhhH-------HHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 1689999999999964 34555544 78899999999999999999999999999998875
No 374
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.63 E-value=1.5e-15 Score=142.58 Aligned_cols=166 Identities=16% Similarity=0.265 Sum_probs=111.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|||+.|+|||+|+.++.+- +.|+.+.. |. ..+. ......++.+|++.|+..|..+ .+.+++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~--~~-~~~~--~~~~~v~L~iwDt~G~e~~~~l-----~~~~~~ 71 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFEN--YT-ASFE--IDKRRIELNMWDTSGSSYYDNV-----RPLAYP 71 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc--eE-EEEE--ECCEEEEEEEEeCCCcHHHHHH-----hHHhcc
Confidence 37899999999999999999853 23333321 21 1111 1234578999999999988877 555677
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
+.. +++++|.+++.+ ++.+ ..|...++... +
T Consensus 72 ~~d~illvfdis~~~S-f~~i~~~w~~~~~~~~-------------------------------------------~--- 104 (222)
T cd04173 72 DSDAVLICFDISRPET-LDSVLKKWQGETQEFC-------------------------------------------P--- 104 (222)
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhC-------------------------------------------C---
Confidence 777 478899999887 4554 56743322211 1
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhH-HHHHHHHHHHHHHhCC-eEEEeccCCccc-HHHHHHHHHHHHhC
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHF-DFVQQYIRKFCLKFGA-GLFYTSAKEDKN-CDLLYKYLAHRLYG 249 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~-d~i~q~LR~l~~~~Ga-sli~tS~k~~~n-~~~l~~~l~h~l~~ 249 (415)
++|+++||||+|+....+..+.+.+... -.-......+|.++|+ .+++|||+++.+ ++.+|..+....+.
T Consensus 105 -------~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 105 -------NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred -------CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 7899999999999653211111110000 0112347889999997 899999999886 99999998776544
No 375
>KOG0056|consensus
Probab=99.63 E-value=5.4e-16 Score=155.08 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=91.6
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAH 80 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~ 80 (415)
++++|+||||++.+| +.++++||+|+||||+||.|..+++.++|.+. +++.|++..... -+..+|++.++--.+.
T Consensus 550 ~k~vl~disF~v~pG---ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~-iDgqdIrnvt~~SLRs~IGVVPQDtvLFN 625 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPG---KTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT-IDGQDIRNVTQSSLRSSIGVVPQDTVLFN 625 (790)
T ss_pred CCceeecceEEecCC---cEEEEECCCCCchhHHHHHHHHHhhccCceEE-EcCchHHHHHHHHHHHhcCcccCcceeec
Confidence 468999999999999 99999999999999999999999999999976 777776543322 2344555433221122
Q ss_pred hhhhhhc-cCCCCCCchhhHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 81 SNLLRFA-LNQETLPHTMVMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 81 ~~Ll~~~-l~~~~~~~~~v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
+.++... ...-...+..++........+.-+-.+ +.+...+.+.- |+|||||||||+|||++...|....+||.+|
T Consensus 626 dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERG--LkLSGGEKQRVAiARtiLK~P~iIlLDEATS 703 (790)
T KOG0056|consen 626 DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERG--LKLSGGEKQRVAIARTILKAPSIILLDEATS 703 (790)
T ss_pred ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcc--cccCCcchhhHHHHHHHhcCCcEEEEcchhh
Confidence 2221110 011111122222111111111100000 11112222221 5569999999999999998888888888765
No 376
>KOG0093|consensus
Probab=99.63 E-value=6.5e-16 Score=131.85 Aligned_cols=159 Identities=18% Similarity=0.315 Sum_probs=124.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-CCCC--CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-DSPE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~~p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-++.|+|.+.+|||+++.+.++- ..+. ++.++.|....+ ...+.+..+++|++.|++.|+.+ +..+++..
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTv--yr~~kRiklQiwDTagqEryrti-----TTayyRga 94 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV--YRSDKRIKLQIWDTAGQERYRTI-----TTAYYRGA 94 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEe--eecccEEEEEEEecccchhhhHH-----HHHHhhcc
Confidence 58899999999999999999874 3332 333343333322 22345788999999999999888 66778887
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.++..+ +..++.|...+..+..
T Consensus 95 mgfiLmyDitNeeS-f~svqdw~tqIktysw------------------------------------------------- 124 (193)
T KOG0093|consen 95 MGFILMYDITNEES-FNSVQDWITQIKTYSW------------------------------------------------- 124 (193)
T ss_pred ceEEEEEecCCHHH-HHHHHHHHHHheeeec-------------------------------------------------
Confidence 7 478899998776 7888888655544421
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
...|+++||||||+ |.++-+..|. .|.++.+.|.-+|+||+|++.|++.+|+-++..+..
T Consensus 125 ---~naqvilvgnKCDm----d~eRvis~e~-------g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 125 ---DNAQVILVGNKCDM----DSERVISHER-------GRQLADQLGFEFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred ---cCceEEEEecccCC----ccceeeeHHH-------HHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHH
Confidence 17899999999998 4567777766 899999999999999999999999999999888775
No 377
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.62 E-value=4.2e-15 Score=138.84 Aligned_cols=161 Identities=24% Similarity=0.360 Sum_probs=113.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|+|||||+++|.+- +.|+.| +++....+.- .......+.+|++.|+..+..+. ..++.+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~--~d~~~~~i~~-~~~~~~~~~i~Dt~G~~~~~~l~-----~~~~~~ 73 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIG--LDFFSKRVTL-PGNLNVTLQVWDIGGQSIGGKML-----DKYIYG 73 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee--EEEEEEEEEe-CCCCEEEEEEEECCCcHHHHHHH-----HHHhhc
Confidence 5899999999999999999753 223333 3232222211 11234678999999987776663 233555
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
+. +++++|.+++.+ ++.+..|...+.+..... .
T Consensus 74 ad~iilV~D~t~~~s-~~~~~~w~~~l~~~~~~~------------------------------------------~--- 107 (215)
T cd04109 74 AHAVFLVYDVTNSQS-FENLEDWYSMVRKVLKSS------------------------------------------E--- 107 (215)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcccc------------------------------------------C---
Confidence 55 467899998877 677777866665544210 0
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.++|+++|+||+|+.. .+....++ ++.++..+|+.++++||+++.+++.+|++++..+++.
T Consensus 108 ----~~~piilVgNK~DL~~----~~~v~~~~-------~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 108 ----TQPLVVLVGNKTDLEH----NRTVKDDK-------HARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred ----CCceEEEEEECccccc----ccccCHHH-------HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 1678999999999953 12333333 6778888999999999999999999999999998874
No 378
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=2.9e-15 Score=140.49 Aligned_cols=155 Identities=22% Similarity=0.320 Sum_probs=108.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-CCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-GID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++. |-. .|+.|. .+....+.. ......+.+|+++|...|..+ ...++.
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~--~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 84 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV--EVHPLDFFT--NCGKIRFYCWDTAGQEKFGGL-----RDGYYI 84 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccce--eEEEEEEEE--CCeEEEEEEEECCCchhhhhh-----hHHHcc
Confidence 589999999999999999875 432 333333 222222211 123468899999998887666 333455
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.+.. +
T Consensus 85 ~~~~~ilvfD~~~~~s-~~~i~~w~~~i~~~~----------------------------------------------~- 116 (219)
T PLN03071 85 HGQCAIIMFDVTARLT-YKNVPTWHRDLCRVC----------------------------------------------E- 116 (219)
T ss_pred cccEEEEEEeCCCHHH-HHHHHHHHHHHHHhC----------------------------------------------C-
Confidence 555 467899998776 566777765544321 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
++|+++|+||+|+.. +...+++ + .++.+++..+++||||++.+++.+|.+|+..++..
T Consensus 117 ------~~piilvgNK~Dl~~-----~~v~~~~-------~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 117 ------NIPIVLCGNKVDVKN-----RQVKAKQ-------V-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred ------CCcEEEEEEchhhhh-----ccCCHHH-------H-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 689999999999853 1222222 2 45667888999999999999999999999888753
No 379
>KOG0079|consensus
Probab=99.62 E-value=4.7e-16 Score=132.81 Aligned_cols=174 Identities=22% Similarity=0.383 Sum_probs=124.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC---CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSP---EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p---~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
..+|||++|+|||+|+.++..-.-. ....+.+|....+ ....++..+.||+.+|++.|+.+ +..+++.+.
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv--~i~G~~VkLqIwDtAGqErFrti-----tstyyrgth 82 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTV--DINGDRVKLQIWDTAGQERFRTI-----TSTYYRGTH 82 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEe--ecCCcEEEEEEeecccHHHHHHH-----HHHHccCCc
Confidence 4679999999999999999743211 1122222222222 22356789999999999999888 667788877
Q ss_pred h-HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 V-MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 v-~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+ +.++|.++.++ +.....|.+.++..++
T Consensus 83 gv~vVYDVTn~ES-F~Nv~rWLeei~~ncd-------------------------------------------------- 111 (198)
T KOG0079|consen 83 GVIVVYDVTNGES-FNNVKRWLEEIRNNCD-------------------------------------------------- 111 (198)
T ss_pred eEEEEEECcchhh-hHhHHHHHHHHHhcCc--------------------------------------------------
Confidence 4 67899998777 7788899777666653
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCCCCCc
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPFRTSA 256 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f~~~a 256 (415)
.+|-++||||.|.-+. +-++.++ .|.||++.|..+|+||+|+..|++..|..|....+...+..+.
T Consensus 112 ---sv~~vLVGNK~d~~~R----rvV~t~d-------Ar~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~r~~~ 177 (198)
T KOG0079|consen 112 ---SVPKVLVGNKNDDPER----RVVDTED-------ARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAKLRESV 177 (198)
T ss_pred ---cccceecccCCCCccc----eeeehHH-------HHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHHHhhcH
Confidence 4678999999998542 3445555 7999999999999999999999999999987666543333323
Q ss_pred ceeeCCeeEE
Q psy13975 257 LIVEKDAVLI 266 (415)
Q Consensus 257 ~v~d~d~i~i 266 (415)
.+-..+.+-.
T Consensus 178 ~~~r~~~~~l 187 (198)
T KOG0079|consen 178 EQQRADAVSL 187 (198)
T ss_pred HHHhhcceEe
Confidence 3333344433
No 380
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=2.9e-15 Score=139.68 Aligned_cols=177 Identities=18% Similarity=0.354 Sum_probs=119.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-CC--CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-SP--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-~p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+.|+|||||++++.+-. .. ..+.+.++....+. ........+.+|+++|+..+..+ ...++.+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~-~~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~~ 76 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIE-IEPGVRIKLQLWDTAGQERFRSI-----TRSYYRNS 76 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEE-ECCCCEEEEEEEeCCcchhHHHH-----HHHHhcCC
Confidence 479999999999999999998532 11 12222222222221 11223467899999998877665 33345555
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|++++.+ ++.+..|...+.+... +
T Consensus 77 d~iilv~D~~~~~S-f~~l~~~~~~i~~~~~------------------------------------------~------ 107 (211)
T cd04111 77 VGVLLVFDITNRES-FEHVHDWLEEARSHIQ------------------------------------------P------ 107 (211)
T ss_pred cEEEEEEECCCHHH-HHHHHHHHHHHHHhcC------------------------------------------C------
Confidence 5 467899988776 6666667544333221 0
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCCCCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPFRTS 255 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f~~~ 255 (415)
-.+|++||+||+|+.. .+....++ .+.++..+|..++.+|++++.+++.+++.|+..++..
T Consensus 108 ---~~~~iilvgNK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~----- 168 (211)
T cd04111 108 ---HRPVFILVGHKCDLES----QRQVTREE-------AEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYER----- 168 (211)
T ss_pred ---CCCeEEEEEEcccccc----ccccCHHH-------HHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHH-----
Confidence 1578999999999864 12333333 5667788899999999999999999999999888753
Q ss_pred cceeeCCeeEEeCCCCcc
Q psy13975 256 ALIVEKDAVLIPSGWDNM 273 (415)
Q Consensus 256 a~v~d~d~i~iP~gwDs~ 273 (415)
..+.++....||++.
T Consensus 169 ---~~~~~~~~~~~~~~~ 183 (211)
T cd04111 169 ---IKRGELCALDGWDGV 183 (211)
T ss_pred ---hhcCCCCcccccccc
Confidence 234567777888554
No 381
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.62 E-value=1.6e-15 Score=175.13 Aligned_cols=169 Identities=14% Similarity=0.041 Sum_probs=107.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC---CCCcEEEEeceeecCCCCccccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS---PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~---p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~ 79 (415)
+.+|+|||++|.+| ++++|+|+||||||||+++|+|+.+ +++|.++ +++.++. ...+.++++..++. ..
T Consensus 776 ~~iL~~vs~~i~~G---e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~-i~G~~~~---~~~~~~i~yv~Q~~-~~ 847 (1394)
T TIGR00956 776 RVILNNVDGWVKPG---TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRL-VNGRPLD---SSFQRSIGYVQQQD-LH 847 (1394)
T ss_pred cEeeeCCEEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE-ECCEECC---hhhhcceeeecccc-cC
Confidence 46899999999999 9999999999999999999999986 6779876 5555542 12223445443321 11
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcCCc------------hhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhh
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMTTP------------WNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~~p------------~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~ 145 (415)
+..+ ++++.... ...+..+ ..+++.++. .+..+..+.. -+||+|||||+.||+++.
T Consensus 848 ~~~~--------Tv~E~L~~-~a~l~~~~~~~~~~~~~~v~~~l~~l~L-~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 848 LPTS--------TVRESLRF-SAYLRQPKSVSKSEKMEYVEEVIKLLEM-ESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred CCCC--------CHHHHHHH-HHHhCCCCCCCHHHHHHHHHHHHHHcCC-hhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 1111 11111110 0000000 112222222 1122222221 046999999999999999
Q ss_pred cccc-cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 146 FARL-RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 146 ~~~~-~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
.++. .+.+||| +.++|......|++.|++++. .|.+
T Consensus 918 ~~P~~iLlLDEP------------------------------------------TsgLD~~~~~~i~~~L~~la~-~g~t 954 (1394)
T TIGR00956 918 AKPKLLLFLDEP------------------------------------------TSGLDSQTAWSICKLMRKLAD-HGQA 954 (1394)
T ss_pred cCCCeEEEEcCC------------------------------------------CCCCCHHHHHHHHHHHHHHHH-cCCE
Confidence 7775 5666765 457777888899999999975 5999
Q ss_pred EEEeccCC
Q psy13975 225 LFYTSAKE 232 (415)
Q Consensus 225 li~tS~k~ 232 (415)
++.++|..
T Consensus 955 vI~t~H~~ 962 (1394)
T TIGR00956 955 ILCTIHQP 962 (1394)
T ss_pred EEEEecCC
Confidence 99999764
No 382
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.62 E-value=4.6e-15 Score=134.09 Aligned_cols=163 Identities=16% Similarity=0.200 Sum_probs=106.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQG-ID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G-l~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|+|||||+.++.. .+ .|+.|. .|. ..+. ......++.+|+++|+..|..+ ...++.+
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~--~~~-~~~~--~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~ 72 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD--NYA-VTVM--IGGEPYTLGLFDTAGQEDYDRL-----RPLSYPQ 72 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee--eeE-EEEE--ECCEEEEEEEEECCCccchhhh-----hhhhccc
Confidence 689999999999999999974 32 233322 121 1221 1233467899999999887766 4556666
Q ss_pred hh-hHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
.. +++++|.+++.+ ++.+. .|...++... +
T Consensus 73 a~~~ilv~d~~~~~s-~~~~~~~w~~~i~~~~-------------------------------------------~---- 104 (175)
T cd01874 73 TDVFLVCFSVVSPSS-FENVKEKWVPEITHHC-------------------------------------------P---- 104 (175)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC-------------------------------------------C----
Confidence 66 478899998877 55553 5744432211 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChh-hHHHHHHHHHHHHHHhC-CeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEE-HFDFVQQYIRKFCLKFG-AGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e-~~d~i~q~LR~l~~~~G-asli~tS~k~~~n~~~l~~~l~h~l 247 (415)
.+|+++|+||+|+...-+-...+..+ ....-...++.+|.++| ..+++|||+++.|++.+|+.++...
T Consensus 105 ------~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 105 ------KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred ------CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 68999999999985431100000000 00111223677888888 5899999999999999999987643
No 383
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.62 E-value=4e-15 Score=131.59 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=109.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC---CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSP---EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p---~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|+|||||++++.+...+ ......+|....+.. ......+.+|+++|...+..+ ....+.+..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~~d 74 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV--RNKEVRVNFFDLSGHPEYLEV-----RNEFYKDTQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE--CCeEEEEEEEECCccHHHHHH-----HHHHhccCC
Confidence 6899999999999999999865321 122222232222211 123467899999998766655 222344444
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|.+++.+ ++.+..|...+.+..... .
T Consensus 75 ~~ilv~D~~~~~s-~~~~~~~~~~~~~~~~~~-------------------------------------~---------- 106 (168)
T cd04119 75 GVLLVYDVTDRQS-FEALDSWLKEMKQEGGPH-------------------------------------G---------- 106 (168)
T ss_pred EEEEEEECCCHHH-HHhHHHHHHHHHHhcccc-------------------------------------c----------
Confidence 467889888766 566777766555443211 0
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
...++|+++|+||+|+.. ++..+.++ .+.++.+.+..++++|++++.+++.+++.|.+.++
T Consensus 107 ~~~~~piilv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 107 NMENIVVVVCANKIDLTK----HRAVSEDE-------GRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred cCCCceEEEEEEchhccc----ccccCHHH-------HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 112789999999999963 12233333 56677888899999999999999999999988765
No 384
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=3.5e-15 Score=135.95 Aligned_cols=176 Identities=18% Similarity=0.191 Sum_probs=113.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccce-EEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTR-LGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~-l~i~~l~g~~~~~ 81 (415)
+++|+++|++|.+| +++.|+|.||||||||++.|+|...|++|.++ +++.++.......++. +.-++++ +..
T Consensus 19 k~~l~~~sL~I~~g---~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~-Idg~dVtk~~~~~RA~~larVfQd--p~~- 91 (263)
T COG1101 19 KRALNGLSLEIAEG---DFVTVIGSNGAGKSTLLNAIAGDLKPTSGQIL-IDGVDVTKKSVAKRANLLARVFQD--PLA- 91 (263)
T ss_pred HHHHhcCceeecCC---ceEEEEcCCCccHHHHHHHhhCccccCCceEE-ECceecccCCHHHHhhHHHHHhcc--hhh-
Confidence 56899999999999 99999999999999999999999999999977 6777776654433321 1111221 110
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC----C------------chhHHHHHHh----HHHHHHHHHhhhcCChhhHHHHHHH
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT----T------------PWNIIDELHN----WASVLQDHIDSLNIGAHDYQAGRCC 141 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~----~------------p~~~l~~l~~----w~~~l~~~~~~L~lSgGekQRl~LA 141 (415)
-..+..++..++.+. . ...+.+.+.. ....+...+..| ||||||-+.++
T Consensus 92 ---------gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglL--SGGQRQalsL~ 160 (263)
T COG1101 92 ---------GTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLL--SGGQRQALSLL 160 (263)
T ss_pred ---------CCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhc--cchHHHHHHHH
Confidence 012222222221110 0 0011111111 012233334434 99999999999
Q ss_pred HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh
Q psy13975 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF 221 (415)
Q Consensus 142 rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~ 221 (415)
.|-...+..+.+||-+ ..+|+...+++++.=+++..++
T Consensus 161 MAtl~~pkiLLLDEHT------------------------------------------AALDPkta~~vm~lT~kiV~~~ 198 (263)
T COG1101 161 MATLHPPKILLLDEHT------------------------------------------AALDPKTAEFVMELTAKIVEEH 198 (263)
T ss_pred HHhcCCCcEEEecchh------------------------------------------hcCCcchHHHHHHHHHHHHHhc
Confidence 9988767666666643 3455566788888889999999
Q ss_pred CCeEEEeccCCcccHHHHHHH
Q psy13975 222 GAGLFYTSAKEDKNCDLLYKY 242 (415)
Q Consensus 222 Gasli~tS~k~~~n~~~l~~~ 242 (415)
+.+-++++ +|.+...+|
T Consensus 199 klTtlMVT----Hnm~~Al~y 215 (263)
T COG1101 199 KLTTLMVT----HNMEDALDY 215 (263)
T ss_pred CCceEEEe----ccHHHHHhh
Confidence 99888887 555444443
No 385
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=5.1e-15 Score=134.51 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=107.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSPE---KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p~---~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|+|||||++++.+-..+. ......|.. .+.. .......+.+|+++|+..|..+ .+..+.++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~-~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~ad 74 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQG-PNGKIIELALWDTAGQEEYDRL-----RPLSYPDVD 74 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEe-cCCcEEEEEEEECCCchhHHHH-----HHHhCCCCC
Confidence 68999999999999999998543221 121111211 1111 1133467889999998877666 333455555
Q ss_pred -hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 98 -VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
+++++|.+++.+ ++.+ ..|...+.... .
T Consensus 75 ~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------~--- 104 (187)
T cd04132 75 VLLICYAVDNPTS-LDNVEDKWFPEVNHFC----------------------------------------------P--- 104 (187)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHHhC----------------------------------------------C---
Confidence 467789888766 4444 34643322110 0
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
++|+++|+||+|+....+..+.+..++ .+.+|..+|+ .+++||++++.+++.++..+++.++..
T Consensus 105 ----~~piilv~nK~Dl~~~~~~~~~v~~~~-------~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 105 ----GTPIMLVGLKTDLRKDKNLDRKVTPAQ-------AESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred ----CCCEEEEEeChhhhhCccccCCcCHHH-------HHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 689999999999975322222233333 6778888998 899999999999999999999988864
No 386
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.61 E-value=6.8e-15 Score=129.94 Aligned_cols=155 Identities=19% Similarity=0.351 Sum_probs=104.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC-CC--CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI-DS--PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl-~~--p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|+|||||++++.+- .. ...+.+.+|....+.-........+.+|+++|+..|..+ ....+++..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~~~~ 76 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI-----TKAYYRGAQ 76 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHh-----HHHHhcCCC
Confidence 6899999999999999999853 11 122333333222221111133467899999998877666 333445555
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|.+++.+ ++.+..|...+.+..
T Consensus 77 ~~v~v~d~~~~~s-~~~l~~~~~~~~~~~--------------------------------------------------- 104 (162)
T cd04106 77 ACILVFSTTDRES-FEAIESWKEKVEAEC--------------------------------------------------- 104 (162)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhC---------------------------------------------------
Confidence 367788888776 566667754443221
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHH
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h 245 (415)
.++|+++|+||.|+... ..++.++ +..++.++|..++++|++++.+++.++++|..
T Consensus 105 --~~~p~iiv~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 105 --GDIPMVLVQTKIDLLDQ----AVITNEE-------AEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred --CCCCEEEEEEChhcccc----cCCCHHH-------HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 07899999999999642 2333333 56777888999999999999999999999864
No 387
>PLN03140 ABC transporter G family member; Provisional
Probab=99.60 E-value=1e-15 Score=176.57 Aligned_cols=182 Identities=13% Similarity=0.036 Sum_probs=110.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeecCCCCccccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE---KGLALEYAYINVSDEYREDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~---~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~ 79 (415)
+.+|+|+|+.|++| +.++|+|+|||||||||++|+|..+|+ +|++. |++.++.... .+..+++..+.. ..
T Consensus 178 ~~IL~~vs~~i~~G---e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~-~nG~~~~~~~--~~~~i~yv~Q~d-~~ 250 (1470)
T PLN03140 178 LTILKDASGIIKPS---RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEIT-YNGYRLNEFV--PRKTSAYISQND-VH 250 (1470)
T ss_pred ceeccCCeEEEeCC---eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEE-ECCEechhhc--ccceeEEecccc-cC
Confidence 46899999999999 999999999999999999999999887 89876 7666553321 123344443221 11
Q ss_pred chhh-----hhhccCCC---C-CC---chhhHHH---------Hh-------cC------CchhHHHHHHhHHHHH----
Q psy13975 80 HSNL-----LRFALNQE---T-LP---HTMVMLV---------VS-------MT------TPWNIIDELHNWASVL---- 121 (415)
Q Consensus 80 ~~~L-----l~~~l~~~---~-~~---~~~v~~~---------~d-------~~------~p~~~l~~l~~w~~~l---- 121 (415)
+..+ +.+...-. . +. ....... +| .. ....+++.+++. +..
T Consensus 251 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~-~~~~t~v 329 (1470)
T PLN03140 251 VGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLD-ICKDTIV 329 (1470)
T ss_pred CCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCc-cccCcee
Confidence 2111 11110000 0 00 0000000 00 00 000111122110 000
Q ss_pred -HHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcc
Q psy13975 122 -QDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDF 200 (415)
Q Consensus 122 -~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~ 200 (415)
++.+. ++||||||||.||+++..++..+.+||| +.
T Consensus 330 g~~~~r--glSGGerkRVsia~aL~~~p~vlllDEP------------------------------------------Ts 365 (1470)
T PLN03140 330 GDEMIR--GISGGQKKRVTTGEMIVGPTKTLFMDEI------------------------------------------ST 365 (1470)
T ss_pred CCcccc--CCCcccceeeeehhhhcCCCcEEEEeCC------------------------------------------Cc
Confidence 11112 3599999999999999976666666664 45
Q ss_pred cCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccH
Q psy13975 201 YYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNC 236 (415)
Q Consensus 201 ~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~ 236 (415)
++|......|.+.||+++...|.++++++|.....+
T Consensus 366 GLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i 401 (1470)
T PLN03140 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPET 401 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH
Confidence 777788888999999999888999999987543333
No 388
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=7.6e-15 Score=137.33 Aligned_cols=160 Identities=20% Similarity=0.321 Sum_probs=112.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC---CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS---PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~---p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+.|+|||||+++|.+-.. ...+.+..+....+.. ......+.+|++.|+..|..+ ...++...
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~--~~~~~~l~l~Dt~G~~~~~~~-----~~~~~~~~ 85 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV--EGKTVKAQIWDTAGQERYRAI-----TSAYYRGA 85 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE--CCEEEEEEEEECCCcHHHHHH-----HHHHhCCC
Confidence 4899999999999999999875321 1223333332222211 123467899999998877666 33344555
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|++++.+ ++.+..|...+.....
T Consensus 86 ~~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~------------------------------------------------- 115 (216)
T PLN03110 86 VGALLVYDITKRQT-FDNVQRWLRELRDHAD------------------------------------------------- 115 (216)
T ss_pred CEEEEEEECCChHH-HHHHHHHHHHHHHhCC-------------------------------------------------
Confidence 5 577889888766 6777777554433210
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.++|+++|+||+|+.. .+...++. .+.++..++..+++||++++.+++.+++.+++.++..
T Consensus 116 ---~~~piiiv~nK~Dl~~----~~~~~~~~-------~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 116 ---SNIVIMMAGNKSDLNH----LRSVAEED-------GQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred ---CCCeEEEEEEChhccc----ccCCCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 1789999999999853 23343333 5677788999999999999999999999999998874
No 389
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.60 E-value=1e-14 Score=129.94 Aligned_cols=155 Identities=18% Similarity=0.357 Sum_probs=105.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|+|||||++++.+-. .|+.| ..|....+.. ......+.+|+++|...+..+ ....+.+
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~~~l~Dt~g~~~~~~~-----~~~~~~~ 73 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG--IDFKVKTVFR--NDKRVKLQIWDTAGQERYRTI-----TTAYYRG 73 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEE--CCEEEEEEEEECCChHHHHHH-----HHHHccC
Confidence 68999999999999999998542 23333 2222222211 123467899999998776655 3334555
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|...+.+.. + +
T Consensus 74 ~~~~l~v~d~~~~~s-~~~~~~~~~~i~~~~-------------------------------------------~--~-- 105 (165)
T cd01865 74 AMGFILMYDITNEES-FNAVQDWSTQIKTYS-------------------------------------------W--D-- 105 (165)
T ss_pred CcEEEEEEECCCHHH-HHHHHHHHHHHHHhC-------------------------------------------C--C--
Confidence 55 366788887765 666677754432211 0 1
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.+|++||+||+|+... +....++ .+.++..+|..++++|++++.+++.++++++..++
T Consensus 106 -----~~piivv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 106 -----NAQVILVGNKCDMEDE----RVVSSER-------GRQLADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred -----CCCEEEEEECcccCcc----cccCHHH-------HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999642 2222222 45677778889999999999999999999987654
No 390
>KOG0394|consensus
Probab=99.59 E-value=3.6e-15 Score=132.08 Aligned_cols=167 Identities=20% Similarity=0.299 Sum_probs=123.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC--C-CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI--D-SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl--~-~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+|+|+|++|+|||+|++.+... . ......+.+|...++.- .+....+.||+++|++.|.+| ....|+..
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V--d~~~vtlQiWDTAGQERFqsL-----g~aFYRga 82 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV--DDRSVTLQIWDTAGQERFQSL-----GVAFYRGA 82 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE--cCeEEEEEEEecccHHHhhhc-----ccceecCC
Confidence 37899999999999999998732 1 12233333444444432 245678999999999999988 55567777
Q ss_pred hh-HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 MV-MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~v-~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
.. ++++|+..+.+ ++.|+.|.+..-.+.+. .+
T Consensus 83 DcCvlvydv~~~~S-fe~L~~Wr~EFl~qa~~--------------------------~~-------------------- 115 (210)
T KOG0394|consen 83 DCCVLVYDVNNPKS-FENLENWRKEFLIQASP--------------------------QD-------------------- 115 (210)
T ss_pred ceEEEEeecCChhh-hccHHHHHHHHHHhcCC--------------------------CC--------------------
Confidence 74 77889999888 89999996554333321 11
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-CeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-AGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-asli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
+--.|.||+|||.|+-.. +.+.++.+. .+.+|...| +.+|+||||+..|++..|..+.++.+...
T Consensus 116 --Pe~FPFVilGNKiD~~~~--~~r~VS~~~-------Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 116 --PETFPFVILGNKIDVDGG--KSRQVSEKK-------AQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred --CCcccEEEEcccccCCCC--ccceeeHHH-------HHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 127899999999999541 335555555 788999887 47999999999999999999999998753
No 391
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.59 E-value=7.5e-15 Score=129.64 Aligned_cols=157 Identities=22% Similarity=0.392 Sum_probs=105.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-CCC--CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-SPE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-~p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|||||||++++.+.. .+. ......+....+.. .....++.+|+++|...+..+. ...+....
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~-----~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV--DGKRVKLQIWDTAGQERFRSIT-----SSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEECCChHHHHHHH-----HHHhCCCC
Confidence 68999999999999999998642 221 22222222212211 1233578899999987666552 22334444
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|..++++ ++.+..|...+..+.. +
T Consensus 75 ~~ilv~d~~~~~s-~~~~~~~l~~~~~~~~---------------------------------------------~---- 104 (164)
T smart00175 75 GALLVYDITNRES-FENLKNWLKELREYAD---------------------------------------------P---- 104 (164)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhCC---------------------------------------------C----
Confidence 467788888776 5556566544333320 1
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+.. .+.++.+. .+.++.++|+.++++|++++.+++.++..|...++
T Consensus 105 ---~~pivvv~nK~D~~~----~~~~~~~~-------~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 105 ---NVVIMLVGNKSDLED----QRQVSREE-------AEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred ---CCeEEEEEEchhccc----ccCCCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 789999999999753 22333333 56677888999999999999999999999988765
No 392
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=5.2e-15 Score=130.65 Aligned_cols=190 Identities=14% Similarity=0.138 Sum_probs=110.5
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-----cccc---ceEEEEEecC
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-----REDH---TRLGVWILDG 76 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-----~~~~---~~l~i~~l~g 76 (415)
-.+||||++.+| +.++|+|++|||||||+++|.+-..|+.|.+. |...+....+ ..++ .|-...++.+
T Consensus 21 gc~~vsF~l~PG---eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~-Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQ 96 (258)
T COG4107 21 GCRDVSFDLYPG---EVLGIVGESGSGKTTLLKCISGRLTPDAGTVT-YRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred CccccceeecCC---cEEEEEecCCCcHHhHHHHHhcccCCCCCeEE-EEcCCCCchhHhhhchHHHHHHhhhccceeec
Confidence 468999999999 99999999999999999999999999999954 4432221110 1111 1111112222
Q ss_pred cccchhhhhhcc-CCCCCCchhhHH-HHhcCC----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 77 EPAHSNLLRFAL-NQETLPHTMVML-VVSMTT----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 77 ~~~~~~Ll~~~l-~~~~~~~~~v~~-~~d~~~----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
.+. ..| .... .-.++.+-...+ .--+.+ ...|++.++.-...++.....+ ||||+||+.|||.+..+|..
T Consensus 97 nP~-DGL-Rm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtF--SGGMqQRLQiARnLVt~PrL 172 (258)
T COG4107 97 NPR-DGL-RMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTF--SGGMQQRLQIARNLVTRPRL 172 (258)
T ss_pred Ccc-ccc-eeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCccccc--chHHHHHHHHHHHhccCCce
Confidence 221 111 0000 011221111111 000111 1123333333223344555555 99999999999999976665
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
.-.||| +.+++-.-...++..+|.+..+.|.+++.++|
T Consensus 173 vfMDEP------------------------------------------TGGLDVSVQARLLDllrgLv~~l~la~viVTH 210 (258)
T COG4107 173 VFMDEP------------------------------------------TGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred EEecCC------------------------------------------CCCcchhhHHHHHHHHHHHHHhcCceEEEEec
Confidence 554554 44555555667788899999999999888874
Q ss_pred CCcccHHHHHHHHHHHHhC
Q psy13975 231 KEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 231 k~~~n~~~l~~~l~h~l~~ 249 (415)
- +.. -+.+.|++.-
T Consensus 211 D----l~V-arLla~rlmv 224 (258)
T COG4107 211 D----LAV-ARLLADRLMV 224 (258)
T ss_pred h----hHH-HHHhhhccee
Confidence 3 322 2445566554
No 393
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.59 E-value=9.9e-15 Score=129.68 Aligned_cols=154 Identities=20% Similarity=0.301 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CCCCCC--cEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQG-IDSPEK--GLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G-l~~p~~--G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|+|||||++++.+ .+.+.. .....+...... .......+.+|++.|+..|..+ ...++.+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~~~d 74 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAK--FEGKTILVDFWDTAGQERFQTM-----HASYYHKAH 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEE--ECCEEEEEEEEeCCCchhhhhh-----hHHHhCCCC
Confidence 589999999999999998864 333321 111111111111 1123467889999998877766 333455555
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|.+++.+ ++.+..|...+.+.. +
T Consensus 75 ~~i~v~d~~~~~s-~~~~~~~~~~i~~~~-------------------------------------------~------- 103 (161)
T cd04124 75 ACILVFDVTRKIT-YKNLSKWYEELREYR-------------------------------------------P------- 103 (161)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhC-------------------------------------------C-------
Confidence 467889888766 555666654443221 1
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.+|+++|+||+|+... . . .....++.+++..++++|++++.+++.+++.++..++.
T Consensus 104 ---~~p~ivv~nK~Dl~~~------~-~-------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 104 ---EIPCIVVANKIDLDPS------V-T-------QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred ---CCcEEEEEECccCchh------H-H-------HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 6799999999998421 0 1 11345677788899999999999999999999876653
No 394
>PLN03140 ABC transporter G family member; Provisional
Probab=99.59 E-value=4.4e-15 Score=171.41 Aligned_cols=171 Identities=11% Similarity=0.050 Sum_probs=107.0
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEeceeecCCCCccccceEEEEEecCcccch
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~ 81 (415)
.+|+|||++|.+| +.++|+|+|||||||||++|+|...+ ..|.+. +.+.+... ...+..+++..+.. ..+.
T Consensus 894 ~iL~~vs~~i~~G---el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~-inG~~~~~--~~~~~~igyv~Q~d-~~~~ 966 (1470)
T PLN03140 894 QLLREVTGAFRPG---VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR-ISGFPKKQ--ETFARISGYCEQND-IHSP 966 (1470)
T ss_pred eEeeCcEEEEECC---eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEE-ECCccCCh--HHhhhheEEEcccc-ccCC
Confidence 6899999999999 99999999999999999999998653 567754 44433221 11122345543321 1111
Q ss_pred hhhhhccCCCCCCchhhHH-HHhc----CC------chhHHHHHHhHHHHHHHHHhh---hcCChhhHHHHHHHHHhhcc
Q psy13975 82 NLLRFALNQETLPHTMVML-VVSM----TT------PWNIIDELHNWASVLQDHIDS---LNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~-~~d~----~~------p~~~l~~l~~w~~~l~~~~~~---L~lSgGekQRl~LArAl~~~ 147 (415)
.+ +..+...+. .+.. .. ...+++.++. .+..+..+.. -+||+|||||+.||+++..+
T Consensus 967 ~l--------TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL-~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~ 1037 (1470)
T PLN03140 967 QV--------TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVEL-DNLKDAIVGLPGVTGLSTEQRKRLTIAVELVAN 1037 (1470)
T ss_pred CC--------cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCC-hhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhC
Confidence 11 111111000 0000 00 0112333332 1222233210 14699999999999999977
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
|..+.+||| +.++|......+++.||+++.+ |.+++.
T Consensus 1038 P~lL~LDEP------------------------------------------TsgLD~~~a~~v~~~L~~l~~~-g~tVI~ 1074 (1470)
T PLN03140 1038 PSIIFMDEP------------------------------------------TSGLDARAAAIVMRTVRNTVDT-GRTVVC 1074 (1470)
T ss_pred CCEEEEeCC------------------------------------------CCCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 777777765 4577778889999999999864 899999
Q ss_pred eccCCc
Q psy13975 228 TSAKED 233 (415)
Q Consensus 228 tS~k~~ 233 (415)
++|...
T Consensus 1075 t~Hq~~ 1080 (1470)
T PLN03140 1075 TIHQPS 1080 (1470)
T ss_pred EeCCCC
Confidence 997653
No 395
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.59 E-value=7.2e-15 Score=131.42 Aligned_cols=157 Identities=19% Similarity=0.291 Sum_probs=107.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+-. .++.|. ++....+.. ......+.+|+++|...+..+. ...+.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~-----~~~~~ 75 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV--EFGARMITI--DGKQIKLQIWDTAGQESFRSIT-----RSYYR 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--eEEEEEEEE--CCEEEEEEEEECCCcHHHHHHH-----HHHhc
Confidence 478999999999999999998642 233332 222111111 1234578899999987766552 22233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.++.. +
T Consensus 76 ~~d~il~v~d~~~~~s-~~~~~~~~~~~~~~~~------------------------------------------~---- 108 (168)
T cd01866 76 GAAGALLVYDITRRET-FNHLTSWLEDARQHSN------------------------------------------S---- 108 (168)
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCC------------------------------------------C----
Confidence 333 567889887766 5666667544433210 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|++||+||.|+... ...+.++ ++.++.++|+.++++|++.+.|++.++.++.+.++.
T Consensus 109 ------~~pvivv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 109 ------NMTIMLIGNKCDLESR----REVSYEE-------GEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred ------CCcEEEEEECcccccc----cCCCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 7899999999998632 2344433 567778889999999999999999999999998864
No 396
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.59 E-value=6.4e-15 Score=131.52 Aligned_cols=157 Identities=20% Similarity=0.345 Sum_probs=108.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+.. .|+.|. .+....+.. .....++.+|+++|...+..+. ...+.
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~--~~~~~~~~~--~~~~~~l~l~D~~g~~~~~~~~-----~~~~~ 74 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGI--DFKIRTIEL--DGKKIKLQIWDTAGQERFRTIT-----TAYYR 74 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccc--eEEEEEEEE--CCEEEEEEEEeCCchHHHHHHH-----HHHhC
Confidence 479999999999999999998542 233332 222222211 1234678999999987776662 22344
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
++. +++++|.+++.+ ++.+..|...+.+... .
T Consensus 75 ~ad~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~---------------------------------------------~- 107 (167)
T cd01867 75 GAMGIILVYDITDEKS-FENIRNWMRNIEEHAS---------------------------------------------E- 107 (167)
T ss_pred CCCEEEEEEECcCHHH-HHhHHHHHHHHHHhCC---------------------------------------------C-
Confidence 554 467888888776 6666667544433210 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+.+. +....++ ++.++.+++..++++|++.+.+++.+++.+..+++.
T Consensus 108 ------~~p~iiv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 108 ------DVERMLVGNKCDMEEK----RVVSKEE-------GEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred ------CCcEEEEEECcccccc----cCCCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999742 2233333 566777889999999999999999999999988764
No 397
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.59 E-value=6.3e-15 Score=129.53 Aligned_cols=153 Identities=16% Similarity=0.230 Sum_probs=100.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|+|||||++++.+-. .|+.+.. |. ..+. .......+.+|+++|...+..+. ..++..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~--~~-~~~~--~~~~~~~~~i~Dt~G~~~~~~l~-----~~~~~~ 72 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS--YR-KQVV--IDGETCLLDILDTAGQEEYSAMR-----DQYMRT 72 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe--EE-EEEE--ECCEEEEEEEEECCCCcchHHHH-----HHHHhc
Confidence 68999999999999999998532 2333321 11 1110 01223567889999988777663 223444
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 73 ~~~~i~v~~~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------ 103 (162)
T cd04138 73 GEGFLCVFAINSRKS-FEDIHTYREQIKRVKD------------------------------------------------ 103 (162)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC------------------------------------------------
Confidence 44 356778777655 5555555443332221
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
.-++|++||+||+|+.. +....+ .++.++..++..++++|++++.+++.++++++..+
T Consensus 104 ---~~~~piivv~nK~Dl~~-----~~~~~~-------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 104 ---SDDVPMVLVGNKCDLAA-----RTVSSR-------QGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ---CCCCCEEEEEECccccc-----ceecHH-------HHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 01789999999999863 112222 25677777899999999999999999999998654
No 398
>PLN03073 ABC transporter F family; Provisional
Probab=99.59 E-value=2.1e-15 Score=163.62 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC---CCCCcEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID---SPEKGLAL 51 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~---~p~~G~il 51 (415)
+.+|+|+||+|..| ++++|||+|||||||||++|+|.. .|+.|.+.
T Consensus 190 ~~ll~~isl~i~~G---e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~ 238 (718)
T PLN03073 190 RDLIVDASVTLAFG---RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL 238 (718)
T ss_pred CEEEECCEEEECCC---CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE
Confidence 46899999999999 999999999999999999999864 46778865
No 399
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.59 E-value=1.2e-14 Score=130.24 Aligned_cols=165 Identities=17% Similarity=0.262 Sum_probs=104.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh-
Q psy13975 22 ILLISDNSSGKTTLIAKLQGIDSPE---KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM- 97 (415)
Q Consensus 22 v~IlG~nGsGKSTLl~~l~Gl~~p~---~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~- 97 (415)
++|+|+.|+|||||++++.+-.-+. ......|. ..+. .......+.+|+++|+..|..+ .+..+.+..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVE--VDGKPVELGLWDTAGQEDYDRL-----RPLSYPDTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEE--ECCEEEEEEEEECCCCcccchh-----chhhcCCCCE
Confidence 5799999999999999998532211 11111111 1111 1123457889999998877666 444555666
Q ss_pred hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|++++.+ ++.+ ..|...+.+.. +
T Consensus 73 ~ilv~d~~~~~s-~~~~~~~~~~~i~~~~-------------------------------------------~------- 101 (174)
T smart00174 73 FLICFSVDSPAS-FENVKEKWYPEVKHFC-------------------------------------------P------- 101 (174)
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhhC-------------------------------------------C-------
Confidence 467889988776 4444 45644332211 1
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChh-hHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEE-HFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e-~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+...-.....+..+ ....-.+....+|.++|+ .++++|++++.|++.+|+.++..++
T Consensus 102 ---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 102 ---NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred ---CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 68999999999996421100000000 001112336788999997 8999999999999999999987654
No 400
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.58 E-value=8.5e-15 Score=130.25 Aligned_cols=156 Identities=17% Similarity=0.307 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+-. .++.|. .+....+.. ......+.+|+++|...+..+. ...+.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~-----~~~~~ 73 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV--DFKIRTIEL--DGKTIKLQIWDTAGQERFRTIT-----SSYYR 73 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce--eEEEEEEEE--CCEEEEEEEEECCCcHhHHHHH-----HHHhC
Confidence 478999999999999999998532 222232 222222211 1234578899999987776652 22344
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.+... +
T Consensus 74 ~~~~ii~v~d~~~~~s-~~~l~~~~~~~~~~~~---------------------------------------------~- 106 (166)
T cd01869 74 GAHGIIIVYDVTDQES-FNNVKQWLQEIDRYAS---------------------------------------------E- 106 (166)
T ss_pred cCCEEEEEEECcCHHH-HHhHHHHHHHHHHhCC---------------------------------------------C-
Confidence 444 467789888766 6666667544433210 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+... ..+..++ ++.+|..++..++++|++++.+++.++..|.+.++
T Consensus 107 ------~~~~iiv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 107 ------NVNKLLVGNKCDLTDK----RVVDYSE-------AQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred ------CCcEEEEEEChhcccc----cCCCHHH-------HHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 6899999999998532 2233233 67788888999999999999999999999988775
No 401
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.58 E-value=1.2e-14 Score=131.24 Aligned_cols=156 Identities=20% Similarity=0.248 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-CC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-ID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+ .+ .|+.+.. | ...+. .......+.+|+++|+..|..+ ....+.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~--~-~~~~~--~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 71 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN--Y-SANVM--VDGKPVNLGLWDTAGQEDYDRL-----RPLSYP 71 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceee--e-EEEEE--ECCEEEEEEEEECCCchhhhhh-----hhhhcC
Confidence 3789999999999999998874 22 2332221 1 11111 1223467889999998877666 444566
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
+.. +++++|.+++.+ ++.+ ..|...+.... +
T Consensus 72 ~~d~~ilv~d~~~~~s-f~~~~~~~~~~~~~~~-------------------------------------------~--- 104 (174)
T cd01871 72 QTDVFLICFSLVSPAS-FENVRAKWYPEVRHHC-------------------------------------------P--- 104 (174)
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC-------------------------------------------C---
Confidence 665 478899998877 4554 45644332211 0
Q ss_pred cccccccCCcEEEEEeCcchhhhhh--------hcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLE--------KDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE--------~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l 243 (415)
.+|++||+||+|+...-+ ..+.+.. +....+|.++|. .+++|||+++.|++.+|+.+
T Consensus 105 -------~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 105 -------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-------PQGLAMAKEIGAVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred -------CCCEEEEeeChhhccChhhHHHHhhccCCCCCH-------HHHHHHHHHcCCcEEEEecccccCCHHHHHHHH
Confidence 689999999999853210 0011222 336788999996 89999999999999999998
Q ss_pred HHH
Q psy13975 244 AHR 246 (415)
Q Consensus 244 ~h~ 246 (415)
+..
T Consensus 171 ~~~ 173 (174)
T cd01871 171 IRA 173 (174)
T ss_pred HHh
Confidence 753
No 402
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.58 E-value=7.8e-15 Score=171.07 Aligned_cols=164 Identities=10% Similarity=0.015 Sum_probs=97.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc--
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-- 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-- 80 (415)
+++|+|+||+|++| +.++|+|+||||||||+++|.|+.+|++|.+. +.+ ++++. .+++..
T Consensus 651 ~~~l~~isl~i~~G---~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~-~~g------------~i~yv--~Q~~~l~~ 712 (1522)
T TIGR00957 651 PPTLNGITFSIPEG---ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH-MKG------------SVAYV--PQQAWIQN 712 (1522)
T ss_pred CceeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCccCCcEEE-ECC------------EEEEE--cCCccccC
Confidence 46899999999999 99999999999999999999999999999965 221 23333 332211
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHH----HHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWA----SVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~----~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
..+.++......+.......+++.... .+.++.+. ..+.+... .||||||||++||||+..++..+++|||
T Consensus 713 ~Ti~eNI~~g~~~~~~~~~~~~~~~~l---~~~l~~~~~g~~t~ig~~g~--~LSGGQkqRiaLARAl~~~~~illLDEp 787 (1522)
T TIGR00957 713 DSLRENILFGKALNEKYYQQVLEACAL---LPDLEILPSGDRTEIGEKGV--NLSGGQKQRVSLARAVYSNADIYLFDDP 787 (1522)
T ss_pred CcHHHHhhcCCccCHHHHHHHHHHhCC---HHHHHhcCCCCCceecCCCC--CCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 111111111100110000000110000 01111110 01112222 3599999999999999988888888886
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHH-HHhCCeEEEeccC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFC-LKFGAGLFYTSAK 231 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~-~~~Gasli~tS~k 231 (415)
++ ++|.+..+.|.+.++..+ ...|.+++.+||.
T Consensus 788 ~s------------------------------------------aLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~ 821 (1522)
T TIGR00957 788 LS------------------------------------------AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHG 821 (1522)
T ss_pred cc------------------------------------------ccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCC
Confidence 44 444455556666665432 2347899999865
No 403
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.58 E-value=2.3e-14 Score=131.01 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=105.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC-C-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI-D-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl-~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
+|+|+|+.|+|||||++++.+- . .++.|. .|....+.. .+....+.+|+++|...+..+ ....+.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~l~i~D~~G~~~~~~~-----~~~~~~ 72 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGA--AFVAKRMVV--GERVVTLGIWDTAGSERYEAM-----SRIYYR 72 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceee--EEEEEEEEE--CCEEEEEEEEECCCchhhhhh-----hHhhcC
Confidence 6899999999999999999742 2 122222 122111111 223467889999998777655 333444
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|.+.+.... .
T Consensus 73 ~~d~iilv~d~~~~~s-~~~~~~~~~~i~~~~----------------------------------------------~- 104 (193)
T cd04118 73 GAKAAIVCYDLTDSSS-FERAKFWVKELQNLE----------------------------------------------E- 104 (193)
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHhcC----------------------------------------------C-
Confidence 554 467788887655 455555643322110 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
++|+++|+||+|+....+....+.. ..++.++..+++.++++|++++.+++.+++.+.+.+...
T Consensus 105 ------~~piilv~nK~Dl~~~~~~~~~v~~-------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 105 ------HCKIYLCGTKSDLIEQDRSLRQVDF-------HDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred ------CCCEEEEEEcccccccccccCccCH-------HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999998643211112222 225667778899999999999999999999999888754
No 404
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=1.1e-14 Score=133.36 Aligned_cols=160 Identities=18% Similarity=0.311 Sum_probs=107.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
+++|+|+.|+|||||++++.+-.. ...+....+....+.. .+....+.+|+++|+..+..+ ....+.++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV--DGVKVKLQIWDTAGQERFRSV-----THAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE--CCEEEEEEEEeCCCcHHHHHh-----hHHHccCC
Confidence 689999999999999999874321 1122222222111111 123467889999998777655 22234444
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|++++.+ ++.+..|...+.+...
T Consensus 75 d~~i~v~D~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------- 104 (191)
T cd04112 75 HALLLLYDITNKAS-FDNIRAWLTEIKEYAQ------------------------------------------------- 104 (191)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHHHHhCC-------------------------------------------------
Confidence 4 467889888766 5666666544333210
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
.++|+++|+||+|+.. ++....++ ++.++.++|..++++|++++.+++.++.+|..++....
T Consensus 105 ---~~~piiiv~NK~Dl~~----~~~~~~~~-------~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 105 ---EDVVIMLLGNKADMSG----ERVVKRED-------GERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred ---CCCcEEEEEEcccchh----ccccCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 1689999999999863 12233322 56777888999999999999999999999999988754
No 405
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.58 E-value=1.5e-14 Score=135.68 Aligned_cols=159 Identities=21% Similarity=0.243 Sum_probs=107.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
+++|+|..|+|||||++++.+-. .|+.|. .+..... ....+.+|+++|+..|..+ ...++.++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~--~~~~~~~------~~~~l~iwDt~G~e~~~~l-----~~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGG--AFYLKQW------GPYNISIWDTAGREQFHGL-----GSMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCccce--EEEEEEe------eEEEEEEEeCCCcccchhh-----HHHHhccC
Confidence 58899999999999999997432 222232 1211111 2356889999998888776 33345566
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|...+.+..
T Consensus 69 d~~IlV~Dvt~~~S-f~~l~~~~~~l~~~~-------------------------------------------------- 97 (220)
T cd04126 69 AAVILTYDVSNVQS-LEELEDRFLGLTDTA-------------------------------------------------- 97 (220)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHHHHhc--------------------------------------------------
Confidence 5 467899998776 555555433222110
Q ss_pred ccccCCcEEEEEeCcchhhhh---------------hhcccCChhhHHHHHHHHHHHHHHhC--------------CeEE
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTL---------------EKDFYYKEEHFDFVQQYIRKFCLKFG--------------AGLF 226 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~l---------------E~~~~~~~e~~d~i~q~LR~l~~~~G--------------asli 226 (415)
.-++|+++|+||+|+.... +..+.++.+ ..+.+|.+++ +.++
T Consensus 98 --~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~-------e~~~~a~~~~~~~~~~~~~~~~~~~~~~ 168 (220)
T cd04126 98 --NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE-------DAKAFYKRINKYKMLDEDLSPAAEKMCF 168 (220)
T ss_pred --CCCCcEEEEEECcccccccccccccccccccccccccccCCHH-------HHHHHHHHhCccccccccccccccceEE
Confidence 0168999999999996410 011223333 3677887776 5799
Q ss_pred EeccCCcccHHHHHHHHHHHHhCCCC
Q psy13975 227 YTSAKEDKNCDLLYKYLAHRLYGFPF 252 (415)
Q Consensus 227 ~tS~k~~~n~~~l~~~l~h~l~~~~f 252 (415)
+|||+++.|++.+|..++..++....
T Consensus 169 E~SA~tg~~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 169 ETSAKTGYNVDELFEYLFNLVLPLIL 194 (220)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887543
No 406
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.58 E-value=6.3e-15 Score=153.87 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+++++||.|..| ++|+|+|+||+||||||+.|.|...|.+|.+. + ....+++++.+......
T Consensus 335 ~~l~~~~s~~i~~g---~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~-~----------g~~v~igyf~Q~~~~l~-- 398 (530)
T COG0488 335 RLLLKDLSFRIDRG---DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK-V----------GETVKIGYFDQHRDELD-- 398 (530)
T ss_pred ceeecCceEEecCC---CEEEEECCCCCCHHHHHHHHhhhcccCCceEE-e----------CCceEEEEEEehhhhcC--
Confidence 36899999999999 99999999999999999999999999888743 1 12356677765532211
Q ss_pred hhhhccCCCCCCchhhHHHHhcCC-------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTT-------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~-------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
.+..++..+.-.. ....+..+..-.+.+.+.+..| |||||.||.+|+.+.+++..+++||
T Consensus 399 -----------~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~L--SGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 399 -----------PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVL--SGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred -----------ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhc--CHhHHHHHHHHHHhccCCCEEEEcC
Confidence 1111111111001 0112222222223445556666 9999999999999999888888888
Q ss_pred hhh
Q psy13975 156 LLS 158 (415)
Q Consensus 156 ~~s 158 (415)
|++
T Consensus 466 PTN 468 (530)
T COG0488 466 PTN 468 (530)
T ss_pred CCc
Confidence 754
No 407
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.58 E-value=6.9e-15 Score=129.91 Aligned_cols=155 Identities=17% Similarity=0.239 Sum_probs=102.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-C----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-D----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|||||||++++.+- . .|+.+.. | ...+. .......+.+|+++|...|..+ ...++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~--~-~~~~~--~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 71 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS--Y-RKQIE--VDGQQCMLEILDTAGTEQFTAM-----RDLYIK 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhh--E-EEEEE--ECCEEEEEEEEECCCccccchH-----HHHHhh
Confidence 47899999999999999998742 2 2332211 1 11111 1123467789999998877766 333445
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.+....
T Consensus 72 ~~~~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------------- 104 (163)
T cd04136 72 NGQGFVLVYSITSQSS-FNDLQDLREQILRVKDT---------------------------------------------- 104 (163)
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 555 467788888776 56666664443332110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
-++|+++|+||+|+... +....++ ...++.+++..++.+|++++.+++.++..++..+
T Consensus 105 -----~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 105 -----ENVPMVLVGNKCDLEDE----RVVSREE-------GQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred -----CCCCEEEEEECcccccc----ceecHHH-------HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 17899999999998531 2222222 4566777888899999999999999999997653
No 408
>PTZ00243 ABC transporter; Provisional
Probab=99.58 E-value=1.4e-14 Score=168.90 Aligned_cols=137 Identities=11% Similarity=-0.004 Sum_probs=79.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+|+||+|++| ++++|+|+||||||||++.|.|+.+|+.|.+. + ..++++..+........
T Consensus 673 ~~iL~~isl~i~~G---~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~-~------------~~~i~yv~Q~~~l~~~T 736 (1560)
T PTZ00243 673 KVLLRDVSVSVPRG---KLTVVLGATGSGKSTLLQSLLSQFEISEGRVW-A------------ERSIAYVPQQAWIMNAT 736 (1560)
T ss_pred ceeEeeeEEEECCC---CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-E------------CCeEEEEeCCCccCCCc
Confidence 35899999999999 99999999999999999999999999999964 1 12344443221111111
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCchhHHHHH--HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPWNIIDEL--HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l--~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
+..+......+....+..+++.......++.+ +. ...+.+.... ||||||||++||||+..++..+++|||++
T Consensus 737 v~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~-~t~i~~~g~~--LSGGQkqRvaLARAl~~~p~illLDEP~s 811 (1560)
T PTZ00243 737 VRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGL-ETEIGEKGVN--LSGGQKARVSLARAVYANRDVYLLDDPLS 811 (1560)
T ss_pred HHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccc-hHHhcCCCCC--CCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 11111110000000000111111101111111 01 1112222333 49999999999999998888888888644
No 409
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.58 E-value=8e-15 Score=135.68 Aligned_cols=151 Identities=21% Similarity=0.271 Sum_probs=106.0
Q ss_pred EcCCCCcHHHHHHHHhC-CCC--CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh-hHH
Q psy13975 25 ISDNSSGKTTLIAKLQG-IDS--PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM-VML 100 (415)
Q Consensus 25 lG~nGsGKSTLl~~l~G-l~~--p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~-v~~ 100 (415)
||+.|+|||||+.++.. ... ...+.+..+....+.. .....++.+|++.|...|..+ ...+++++. +++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~--~~~~~~l~iwDt~G~e~~~~l-----~~~~~~~ad~~il 73 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIRFNVWDTAGQEKFGGL-----RDGYYIQGQCAII 73 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE--CCEEEEEEEEECCCchhhhhh-----hHHHhcCCCEEEE
Confidence 69999999999999873 321 1222323333222211 223578999999999888777 444555655 467
Q ss_pred HHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccccccC
Q psy13975 101 VVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLG 180 (415)
Q Consensus 101 ~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlg 180 (415)
++|.++..+ ++.+..|...++++.. +
T Consensus 74 V~D~t~~~S-~~~i~~w~~~i~~~~~-----------------------------------------------------~ 99 (200)
T smart00176 74 MFDVTARVT-YKNVPNWHRDLVRVCE-----------------------------------------------------N 99 (200)
T ss_pred EEECCChHH-HHHHHHHHHHHHHhCC-----------------------------------------------------C
Confidence 889998877 6777778666554320 7
Q ss_pred CcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 181 VDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 181 vpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
+|+++|+||+|+.. +.+..+. ..+|...++.+++|||+++.|++.+|.+|+..++.
T Consensus 100 ~piilvgNK~Dl~~-----~~v~~~~--------~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 100 IPIVLCGNKVDVKD-----RKVKAKS--------ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred CCEEEEEECccccc-----ccCCHHH--------HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999853 2233222 24677789999999999999999999999988764
No 410
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.58 E-value=1e-14 Score=169.68 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=43.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
++|+|+||+|++| +.++|+|+||||||||++.|.|+.+|+.|.+.
T Consensus 440 ~~l~~i~l~i~~G---~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~ 484 (1490)
T TIGR01271 440 PVLKNISFKLEKG---QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK 484 (1490)
T ss_pred cceeeeEEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 5899999999999 99999999999999999999999999999965
No 411
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.58 E-value=6.8e-15 Score=130.36 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=101.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|+|||||++++.+-. .|+.+.. +. ... .......++.+|+++|+..+..+.. ..+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~--~~-~~~--~~~~~~~~l~i~Dt~g~~~~~~~~~-----~~~~~ 71 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS--YR-KQI--EIDGEVCLLDILDTAGQEEFSAMRD-----QYMRT 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh--EE-EEE--EECCEEEEEEEEECCCcccchHHHH-----HHHhh
Confidence 68999999999999999997532 2222211 11 111 1112346788999999887766532 22333
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|...+.+ ++.+..|...+.+....
T Consensus 72 ~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~----------------------------------------------- 103 (164)
T smart00173 72 GEGFLLVYSITDRQS-FEEIKKFREQILRVKDR----------------------------------------------- 103 (164)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC-----------------------------------------------
Confidence 33 357788877766 66666664433322210
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
..+|+++|+||+|+... +....++ +..++..+++.++++|++.+.+++.+++.|+..+
T Consensus 104 ----~~~pii~v~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 104 ----DDVPIVLVGNKCDLESE----RVVSTEE-------GKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred ----CCCCEEEEEECcccccc----ceEcHHH-------HHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 16899999999998531 2222222 4566777889999999999999999999998654
No 412
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.58 E-value=1.9e-14 Score=128.83 Aligned_cols=154 Identities=21% Similarity=0.317 Sum_probs=104.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQ-GID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~-Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|||||||++++. +.. .|+.| ..+....+.. ......+.+|++.|...+..+ ....+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLDFHT--NRGKIRFNVWDTAGQEKFGGL-----RDGYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--eEEEEEEEEE--CCEEEEEEEEECCCChhhccc-----cHHHhcC
Confidence 68999999999999999986 322 23333 2222222211 223467889999998766555 3334445
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
+. +++++|.+++.+ ++.+..|...+.+...
T Consensus 73 ~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------ 103 (166)
T cd00877 73 GQCAIIMFDVTSRVT-YKNVPNWHRDLVRVCG------------------------------------------------ 103 (166)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhCC------------------------------------------------
Confidence 55 467899888776 5666667544433220
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.+|+++|+||+|+... ....+ ...++..++..+++||++++.+++.+|.+|...+++.
T Consensus 104 -----~~piiiv~nK~Dl~~~-----~~~~~--------~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 161 (166)
T cd00877 104 -----NIPIVLCGNKVDIKDR-----KVKAK--------QITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGN 161 (166)
T ss_pred -----CCcEEEEEEchhcccc-----cCCHH--------HHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHhc
Confidence 6899999999999521 11111 2345666788999999999999999999999888764
No 413
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.57 E-value=1.7e-14 Score=128.76 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-CCCC--CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-IDSP--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l~~p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++++|+.|+|||||++++.+ ...+ ....+..+....+. .......+.+|+++|+..+..+ ....+...
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~D~~G~~~~~~~-----~~~~~~~~ 78 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE--VDGHFVTLQIWDTAGQERFRSL-----RTPFYRGS 78 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEE--ECCeEEEEEEEeCCChHHHHHh-----HHHHhcCC
Confidence 5799999999999999999974 3222 12222222211221 1233467889999998877766 33344444
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|++++.+ ++.+..|...+.+.....
T Consensus 79 d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~----------------------------------------------- 110 (170)
T cd04116 79 DCCLLTFAVDDSQS-FQNLSNWKKEFIYYADVK----------------------------------------------- 110 (170)
T ss_pred CEEEEEEECCCHHH-HHhHHHHHHHHHHhcccc-----------------------------------------------
Confidence 4 356788887766 566677754443322100
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHH
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~ 246 (415)
.+-++|+++|+||+|+.. +....++ ++++|.+++. .+++||++++.+++.++..++.+
T Consensus 111 -~~~~~piilv~nK~Dl~~-----~~~~~~~-------~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 111 -EPESFPFVVLGNKNDIPE-----RQVSTEE-------AQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred -cCCCCcEEEEEECccccc-----cccCHHH-------HHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 011789999999999852 2333333 6778888884 79999999999999999998754
No 414
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.57 E-value=1.2e-14 Score=129.24 Aligned_cols=156 Identities=17% Similarity=0.263 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-CCCCC--CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-IDSPE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l~~p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+.|+|||||++++.+ ..... ...+.++....+.. ......+.+|+++|+..+..+ ....+...
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~G~~~~~~~-----~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI--EGKRVKLQIWDTAGQERFRTI-----TQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE--CCEEEEEEEEECCChHHHHHH-----HHHHhccC
Confidence 6899999999999999999864 32221 12212222222211 122357889999998776655 23334444
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|...+....
T Consensus 77 d~~llv~d~~~~~s-~~~~~~~~~~i~~~~-------------------------------------------------- 105 (165)
T cd01864 77 NGAIIAYDITRRSS-FESVPHWIEEVEKYG-------------------------------------------------- 105 (165)
T ss_pred CEEEEEEECcCHHH-HHhHHHHHHHHHHhC--------------------------------------------------
Confidence 4 467788888776 566666754443221
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHH
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~ 246 (415)
..++|+++|+||+|+... +.... ..++.+|.+++. .++.+|++++.+++.+++.+...
T Consensus 106 --~~~~p~ivv~nK~Dl~~~----~~~~~-------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 106 --ASNVVLLLIGNKCDLEEQ----REVLF-------EEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred --CCCCcEEEEEECcccccc----cccCH-------HHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 017899999999999642 12222 236778888887 68999999999999999998764
No 415
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=2.8e-14 Score=130.07 Aligned_cols=158 Identities=20% Similarity=0.353 Sum_probs=107.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-C--CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-S--PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-~--p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|+|||||++++.+.. . .....+..+....+.. ......+.+|+++|...+..+ ....+.+..
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~g~~~~~~~-----~~~~~~~~d 74 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI--ENKIIKLQIWDTNGQERFRSL-----NNSYYRGAH 74 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEECCCcHHHHhh-----HHHHccCCC
Confidence 68999999999999999998542 1 1222222232222211 122467889999998777655 333445555
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|.+++.+ ++.+..|...+..... +
T Consensus 75 ~iilv~d~~~~~s-~~~i~~~~~~i~~~~~---------------------------------------------~---- 104 (188)
T cd04125 75 GYLLVYDVTDQES-FENLKFWINEINRYAR---------------------------------------------E---- 104 (188)
T ss_pred EEEEEEECcCHHH-HHHHHHHHHHHHHhCC---------------------------------------------C----
Confidence 467889888766 6666667544433210 1
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.+|+++|+||+|+.+. ..++.+. .+.++..+|+.++++|++++.+++.++.++++.++.
T Consensus 105 ---~~~~ivv~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 105 ---NVIKVIVANKSDLVNN----KVVDSNI-------AKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred ---CCeEEEEEECCCCccc----ccCCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4789999999998632 2233322 466777789999999999999999999999998875
No 416
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.57 E-value=1.6e-14 Score=129.87 Aligned_cols=161 Identities=18% Similarity=0.235 Sum_probs=108.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC-C----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI-D----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl-~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++++|+.|+|||||++++.+- + .|+.|. +|....+.. .+....+.+|+++|+..|..+ ....+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~--~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~ 72 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGV--DFEMERFEI--LGVPFSLQLWDTAGQERFKCI-----ASTYYRG 72 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee--EEEEEEEEE--CCEEEEEEEEeCCChHHHHhh-----HHHHhcC
Confidence 6889999999999999999853 2 233332 232222211 223467899999998877666 3444556
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
+. +++++|.+++.+ ++.+..|...+.+... | .
T Consensus 73 ad~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~------------------------------------------~--~-- 105 (170)
T cd04108 73 AQAIIIVFDLTDVAS-LEHTRQWLEDALKEND------------------------------------------P--S-- 105 (170)
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHHHHHhcC------------------------------------------C--C--
Confidence 65 467788877655 5566667544322210 1 0
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
.+|+++|+||+|+... ..+ ....+.++.++.++++.++++|++++.+++.+|+.|+..++..+
T Consensus 106 -----~~~iilVgnK~Dl~~~----~~~-----~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~~~ 168 (170)
T cd04108 106 -----SVLLFLVGTKKDLSSP----AQY-----ALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFELG 168 (170)
T ss_pred -----CCeEEEEEEChhcCcc----ccc-----cccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHcc
Confidence 4689999999998532 111 01122366778888999999999999999999999988887654
No 417
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.57 E-value=9.8e-15 Score=129.04 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+.. .++.+.. |. .... ......++.+|+++|...+..+.. ..+.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~--~~-~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~-----~~~~ 72 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS--YT-KQCE--IDGQWAILDILDTAGQEEFSAMRE-----QYMR 72 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce--EE-EEEE--ECCEEEEEEEEECCCCcchhHHHH-----HHHh
Confidence 479999999999999999987532 2322221 11 1110 112235788999999887766632 2333
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 73 ~~~~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 104 (164)
T cd04145 73 TGEGFLLVFSVTDRGS-FEEVDKFHTQILRVKD----------------------------------------------- 104 (164)
T ss_pred hCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 444 467788888766 5666666443333221
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
..++|+++|+||+|+... ..+..++ .+.++..+|..++.+|++++.+++.++++++..
T Consensus 105 ----~~~~piiiv~NK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 105 ----RDEFPMILVGNKADLEHQ----RKVSREE-------GQELARKLKIPYIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred ----CCCCCEEEEeeCcccccc----ceecHHH-------HHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHh
Confidence 117899999999998531 2222222 566777889999999999999999999999764
No 418
>PLN03108 Rab family protein; Provisional
Probab=99.57 E-value=1.2e-14 Score=135.25 Aligned_cols=159 Identities=18% Similarity=0.299 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-CCCC--CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-DSPE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~~p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|++|+|||||+++|.+. ..+. .+.+.++....+.- ......+.+|++.|...+..+ ....+...
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~--~~~~i~l~l~Dt~G~~~~~~~-----~~~~~~~a 79 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI--DNKPIKLQIWDTAGQESFRSI-----TRSYYRGA 79 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE--CCEEEEEEEEeCCCcHHHHHH-----HHHHhccC
Confidence 47999999999999999999854 2221 12212222111111 122356889999988776655 22333444
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+.+.+ ++.+..|...+.+... +
T Consensus 80 d~~vlv~D~~~~~s-~~~l~~~~~~~~~~~~---------------------------------------------~--- 110 (210)
T PLN03108 80 AGALLVYDITRRET-FNHLASWLEDARQHAN---------------------------------------------A--- 110 (210)
T ss_pred CEEEEEEECCcHHH-HHHHHHHHHHHHHhcC---------------------------------------------C---
Confidence 3 467788888765 5666666433221110 1
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.+|+++|+||+|+.. .+.+..++ ..+++.++|..++++|++++.+++.+|+.+++.++.
T Consensus 111 ----~~piiiv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 111 ----NMTIMLIGNKCDLAH----RRAVSTEE-------GEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred ----CCcEEEEEECccCcc----ccCCCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999853 23344333 566778889999999999999999999999988875
No 419
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.57 E-value=1.2e-14 Score=128.84 Aligned_cols=155 Identities=14% Similarity=0.190 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-CCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-GIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+.++. |... |+.+. +....+.. ......+.+|+++|...|..+ ...++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~---~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 71 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED---FYRKEIEV--DSSPSVLEILDTAGTEQFASM-----RDLYIK 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh---eEEEEEEE--CCEEEEEEEEECCCcccccch-----HHHHHh
Confidence 378999999999999998776 3322 22221 11111111 122356789999998877766 233444
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.+....
T Consensus 72 ~ad~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---------------------------------------------- 104 (163)
T cd04176 72 NGQGFIVVYSLVNQQT-FQDIKPMRDQIVRVKGY---------------------------------------------- 104 (163)
T ss_pred hCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 555 456788888776 56666664444332110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
.++|+++|+||+|+.. ......++ ...++..+|..+++||++++.+++.++.++++++
T Consensus 105 -----~~~piviv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 105 -----EKVPIILVGNKVDLES----EREVSSAE-------GRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred -----CCCCEEEEEECccchh----cCccCHHH-------HHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 1789999999999853 12222222 4566667788999999999999999999998654
No 420
>PTZ00369 Ras-like protein; Provisional
Probab=99.56 E-value=1.5e-14 Score=132.09 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+-. .|+.|.. |. ..+. . ......+.+|+++|...|..+ ...++.
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~--~~-~~~~-~-~~~~~~l~i~Dt~G~~~~~~l-----~~~~~~ 75 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDS--YR-KQCV-I-DEETCLLDILDTAGQEEYSAM-----RDQYMR 75 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhE--EE-EEEE-E-CCEEEEEEEEeCCCCccchhh-----HHHHhh
Confidence 589999999999999999997532 2333321 11 1111 1 123467889999998887776 333444
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 76 ~~d~iilv~D~s~~~s-~~~~~~~~~~i~~~~~----------------------------------------------- 107 (189)
T PTZ00369 76 TGQGFLCVYSITSRSS-FEEIASFREQILRVKD----------------------------------------------- 107 (189)
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 555 467889888776 6666667544332210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.-++|+++|+||+|+.. .+.++.++ ...++..++..+++||++++.+++.++.+|+..+..
T Consensus 108 ----~~~~piiiv~nK~Dl~~----~~~i~~~~-------~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 108 ----KDRVPMILVGNKCDLDS----ERQVSTGE-------GQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred ----CCCCCEEEEEECccccc----ccccCHHH-------HHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 01789999999999842 12233222 455667788899999999999999999999988775
No 421
>PLN03130 ABC transporter C family member; Provisional
Probab=99.56 E-value=1.2e-14 Score=169.77 Aligned_cols=135 Identities=15% Similarity=0.098 Sum_probs=82.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCC-cEEEEeceeecCCCCccccceEEEEEecCccc--
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK-GLALEYAYINVSDEYREDHTRLGVWILDGEPA-- 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~-G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-- 79 (415)
.++|+|+||+|++| +.++|+|++|||||||++.|.|.++|.+ |.+. + +.++++ +.+++.
T Consensus 630 ~~vL~~inl~i~~G---e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~-l------------~~~Iay--v~Q~p~Lf 691 (1622)
T PLN03130 630 RPTLSNINLDVPVG---SLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-I------------RGTVAY--VPQVSWIF 691 (1622)
T ss_pred CceeeceeEEecCC---CEEEEECCCCCCHHHHHHHHHHhhccCCCceEE-E------------cCeEEE--EcCccccC
Confidence 46899999999999 9999999999999999999999999999 8854 1 123333 343332
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
...+.++.+....+.+..+..+++.......++.+. +-.+..+.. ..||||||||++||||+..++..+++||++
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP---~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEpt 768 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLP---GGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCC---CcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 122222222111121211112222111111111110 000111211 135999999999999999888888888875
Q ss_pred h
Q psy13975 158 S 158 (415)
Q Consensus 158 s 158 (415)
+
T Consensus 769 S 769 (1622)
T PLN03130 769 S 769 (1622)
T ss_pred c
Confidence 5
No 422
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.56 E-value=2.2e-14 Score=132.26 Aligned_cols=158 Identities=21% Similarity=0.339 Sum_probs=108.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+.. .|+.|. .+....+. ......++.+|+++|+..+..+ ...++.
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~~~l~l~D~~G~~~~~~~-----~~~~~~ 77 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV--DFKIRTVE--INGERVKLQIWDTAGQERFRTI-----TSTYYR 77 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccc--eeEEEEEE--ECCEEEEEEEEeCCCchhHHHH-----HHHHhC
Confidence 479999999999999999997532 233332 22211111 1123457889999998877666 333445
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.... +
T Consensus 78 ~a~~iilv~D~~~~~s-~~~~~~~~~~i~~~~----------------------------------------------~- 109 (199)
T cd04110 78 GTHGVIVVYDVTNGES-FVNVKRWLQEIEQNC----------------------------------------------D- 109 (199)
T ss_pred CCcEEEEEEECCCHHH-HHHHHHHHHHHHHhC----------------------------------------------C-
Confidence 554 567889988776 566666644432211 0
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
.+|++||+||+|+... ..++.++ .+.++..++..++.+|++++.+++.++++|...++...
T Consensus 110 ------~~piivVgNK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~ 170 (199)
T cd04110 110 ------DVCKVLVGNKNDDPER----KVVETED-------AYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAK 170 (199)
T ss_pred ------CCCEEEEEECcccccc----cccCHHH-------HHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 5799999999998631 2233333 56677778999999999999999999999999988653
No 423
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.56 E-value=2.6e-14 Score=128.00 Aligned_cols=158 Identities=22% Similarity=0.324 Sum_probs=105.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC---CCcEEEEeceeecCCCCccccceEEEEEecCcccch-hhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSP---EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS-NLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p---~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~-~Ll~~~l~~~~~~~ 95 (415)
-+++++|+.|+|||||++++.+...+ ..+....+....+.. ......+.+|++.|+..+. .+ ....+.+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~-----~~~~~~~ 75 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI--DGERIKVQLWDTAGQERFRKSM-----VQHYYRN 75 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE--CCeEEEEEEEeCCChHHHHHhh-----HHHhhcC
Confidence 47999999999999999999753322 122222222211111 1234678899999877654 33 2334445
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ +..+..|...+......
T Consensus 76 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~----------------------------------------------- 107 (170)
T cd04115 76 VHAVVFVYDVTNMAS-FHSLPSWIEECEQHSLP----------------------------------------------- 107 (170)
T ss_pred CCEEEEEEECCCHHH-HHhHHHHHHHHHHhcCC-----------------------------------------------
Confidence 44 467889988776 66677776555443210
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC---cccHHHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE---DKNCDLLYKYLAHRL 247 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~---~~n~~~l~~~l~h~l 247 (415)
-.+|+++|+||+|+... +.+..+. ...++..++..+++||+++ +.+++.+|..+++++
T Consensus 108 ----~~~p~iiv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 108 ----NEVPRILVGNKCDLREQ----IQVPTDL-------AQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ----CCCCEEEEEECccchhh----cCCCHHH-------HHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 17899999999998642 2333322 4567777888999999999 889999999998764
No 424
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.56 E-value=2.1e-14 Score=126.90 Aligned_cols=155 Identities=15% Similarity=0.254 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-CC--CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-SP--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-~p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|+|||||++++.+.. .+ ......++....+.. .....++.+|+++|...|..+ ....+....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~l~D~~G~~~~~~~-----~~~~~~~~~ 74 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV--GGKRVKLQIWDTAGQERFRSV-----TRSYYRGAA 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE--CCEEEEEEEEECcchHHHHHh-----HHHHhcCCC
Confidence 68999999999999999997543 22 112222222222211 123467889999998766555 222334444
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|.+++.+ +..+..|...+.... .+
T Consensus 75 ~~i~v~d~~~~~s-~~~~~~~~~~~~~~~---------------------------------------------~~---- 104 (161)
T cd04113 75 GALLVYDITNRTS-FEALPTWLSDARALA---------------------------------------------SP---- 104 (161)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhC---------------------------------------------CC----
Confidence 467788888766 555666643332211 01
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
++|++||+||+|+... ...+.++ ++.++..+|..++++|++++.+++.++..++.+
T Consensus 105 ---~~~iivv~nK~D~~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 105 ---NIVVILVGNKSDLADQ----REVTFLE-------ASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ---CCeEEEEEEchhcchh----ccCCHHH-------HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999641 2333333 567777889999999999999999999999765
No 425
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.56 E-value=3e-14 Score=129.95 Aligned_cols=168 Identities=15% Similarity=0.240 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-CCCCCCC--cEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-GIDSPEK--GLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-Gl~~p~~--G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
.+++|+|++|+|||||+++|. |.+.... .....|. ..+. . ......+.+|++.|...+..+ .+..+.+.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~-~-~~~~~~l~i~Dt~g~~~~~~~-----~~~~~~~a 73 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCR-V-DGKPVQLALWDTAGQEEYERL-----RPLSYSKA 73 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEE-E-CCEEEEEEEEECCCChhcccc-----chhhcCCC
Confidence 589999999999999999997 5443221 1111111 1111 0 112346788999987766444 22234444
Q ss_pred h-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 97 M-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
. ++++++++.+.+ ++.+ ..|...+..+. +
T Consensus 74 ~~~llv~~i~~~~s-~~~~~~~~~~~i~~~~-------------------------------------------~----- 104 (187)
T cd04129 74 HVILIGFAVDTPDS-LENVRTKWIEEVRRYC-------------------------------------------P----- 104 (187)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHHHHHhC-------------------------------------------C-----
Confidence 4 356678777655 5555 35654443221 1
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.+|+++|+||+|+............ +.-.-.+..+.+|.++|+ .+|+||++++.|++.+|+.+...+.+.
T Consensus 105 -----~~piilvgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 105 -----NVPVILVGLKKDLRQDAVAKEEYRT-QRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred -----CCCEEEEeeChhhhhCccccccccc-CCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence 5799999999998542111000000 000001225678888886 799999999999999999999877764
No 426
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.56 E-value=3.3e-14 Score=127.73 Aligned_cols=156 Identities=20% Similarity=0.255 Sum_probs=100.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CC-CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh-
Q psy13975 21 NILLISDNSSGKTTLIAKLQG-ID-SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM- 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G-l~-~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~- 97 (415)
+++|+|+.|+|||||++++.+ .+ ......+.++....+.- ......+.+|+++|+..+..+ ....+.+..
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~~a~~ 74 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLV--DGKPVRLQLCDTAGQDEFDKL-----RPLCYPDTDV 74 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEE--CCEEEEEEEEECCCChhhccc-----cccccCCCcE
Confidence 589999999999999999863 21 11111211111111111 123457789999998777666 344555555
Q ss_pred hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|.+++.+ ++.+ ..|...+.... +
T Consensus 75 ~i~v~d~~~~~s-f~~~~~~~~~~~~~~~-------------------------------------------~------- 103 (173)
T cd04130 75 FLLCFSVVNPSS-FQNISEKWIPEIRKHN-------------------------------------------P------- 103 (173)
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhhC-------------------------------------------C-------
Confidence 467889888776 4433 45643332211 0
Q ss_pred cccCCcEEEEEeCcchhhhhh--------hcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHH
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLE--------KDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLA 244 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE--------~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~ 244 (415)
++|+++|+||+|+..... +.+.+..++ .+.+|.++|. .+++||++++.|++.+++.++
T Consensus 104 ---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-------~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 104 ---KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSR-------AKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred ---CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHH-------HHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999854210 122333333 6778888998 899999999999999998774
No 427
>PLN03232 ABC transporter C family member; Provisional
Probab=99.56 E-value=1.4e-14 Score=168.71 Aligned_cols=137 Identities=14% Similarity=0.082 Sum_probs=81.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc--cc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP--AH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~--~~ 80 (415)
+++|+|+||+|++| +.++|+|++|||||||++.|.|.++|.+|.+..+ +..+++ +.+++ ..
T Consensus 630 ~~vL~~inl~i~~G---e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~------------~~~Iay--v~Q~p~Lf~ 692 (1495)
T PLN03232 630 KPTLSDINLEIPVG---SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVI------------RGSVAY--VPQVSWIFN 692 (1495)
T ss_pred CceeeeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEe------------cCcEEE--EcCcccccc
Confidence 46899999999999 9999999999999999999999999998864311 123333 33333 11
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHh-HHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHN-WASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~-w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
..+.++.+....+.+..+..+++.......++.+.. ....+.+.- ..||||||||++||||+.+++..+++||+++
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G--~~LSGGQkQRIaLARAly~~~~IlLLDEptS 769 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERG--VNISGGQKQRVSMARAVYSNSDIYIFDDPLS 769 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC--cccCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 222222221111111111111111111111111100 000111111 1359999999999999998888888898765
No 428
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.56 E-value=1.4e-14 Score=128.49 Aligned_cols=155 Identities=18% Similarity=0.252 Sum_probs=101.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-CCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-GID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|||||||++++. |.. .|+.+..+ . ..+. .......+.+|+++|+..|..+. ..++.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~l~i~Dt~G~~~~~~~~-----~~~~~ 71 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY--R-KQVE--VDGQQCMLEILDTAGTEQFTAMR-----DLYMK 71 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE--E-EEEE--ECCEEEEEEEEECCCcccchhHH-----HHHHh
Confidence 478999999999999999886 432 23333211 1 1111 11234677899999988777663 22334
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+.+.+ ++.+..|...+.+... .+
T Consensus 72 ~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~--------------------------------------------~~- 105 (164)
T cd04175 72 NGQGFVLVYSITAQST-FNDLQDLREQILRVKD--------------------------------------------TE- 105 (164)
T ss_pred hCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC--------------------------------------------CC-
Confidence 434 356788877665 5555555443322210 01
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
++|+++|+||+|+... +....++ +..+|.+++..++.||++++.+++.++..+..++
T Consensus 106 ------~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 106 ------DVPMILVGNKCDLEDE----RVVGKEQ-------GQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred ------CCCEEEEEECCcchhc----cEEcHHH-------HHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 7899999999999642 2222222 4567777889999999999999999999997653
No 429
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.55 E-value=3.4e-14 Score=139.80 Aligned_cols=185 Identities=11% Similarity=0.119 Sum_probs=120.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCccc-----cceEEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYRED-----HTRLGVW 72 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~~-----~~~l~i~ 72 (415)
..++++|||+|.+| |.++|||++|||||-..+.++++++. -+|.+. |.+.+........ -.++++.
T Consensus 23 ~~aVk~isf~i~~G---EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~-f~G~dll~~se~~lr~iRG~~I~MI 98 (534)
T COG4172 23 VEAVKGISFDIEAG---ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSIL-FDGEDLLAASERQLRGVRGNKIGMI 98 (534)
T ss_pred eEeeccceeeecCC---CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeE-EcChhhhcCCHHHHhhhcccceEEE
Confidence 46899999999999 99999999999999999999988643 256765 7776665433222 1356666
Q ss_pred EecCcccchhhhhhccCCCCCCchhhHHHHhcCC----ch------hHHHHHHh--HHHHHHHHHhhhcCChhhHHHHHH
Q psy13975 73 ILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTT----PW------NIIDELHN--WASVLQDHIDSLNIGAHDYQAGRC 140 (415)
Q Consensus 73 ~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~----p~------~~l~~l~~--w~~~l~~~~~~L~lSgGekQRl~L 140 (415)
++...... ++-+--+..+...+.+.+ .. .+++.++. -...++.+..+| ||||+||+.|
T Consensus 99 FQEPMtSL--------NPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeL--SGGqRQRVMI 168 (534)
T COG4172 99 FQEPMTSL--------NPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL--SGGQRQRVMI 168 (534)
T ss_pred eccccccc--------CcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCccc--CcchhhHHHH
Confidence 55443333 222222223333333221 10 12222211 123456666666 9999999999
Q ss_pred HHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH
Q psy13975 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK 220 (415)
Q Consensus 141 ArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~ 220 (415)
|.|+.-+|..++.|||+ ..+|-.-...|++.||.+-.+
T Consensus 169 AMALan~P~lLIADEPT------------------------------------------TALDVtvQaQIL~Ll~~Lq~~ 206 (534)
T COG4172 169 AMALANEPDLLIADEPT------------------------------------------TALDVTVQAQILDLLKELQAE 206 (534)
T ss_pred HHHHcCCCCeEeecCCc------------------------------------------chhhhhhHHHHHHHHHHHHHH
Confidence 99999666666666653 334444466788899999999
Q ss_pred hCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 221 FGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 221 ~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
+|.+++|.| +++..+++ +.+++|
T Consensus 207 ~gMa~lfIT----HDL~iVr~-~ADrV~ 229 (534)
T COG4172 207 LGMAILFIT----HDLGIVRK-FADRVY 229 (534)
T ss_pred hCcEEEEEe----ccHHHHHH-hhhhEE
Confidence 999999999 45544444 445555
No 430
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=4.6e-14 Score=131.37 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=78.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
..+|+||||++++| +.++|||.||||||||+++|+|.++|++|.+. ..+ ++. ....++..+.+......+
T Consensus 40 ~~aL~disf~i~~G---e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~-v~G-~v~-----~li~lg~Gf~pelTGreN 109 (249)
T COG1134 40 FWALKDISFEIYKG---ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK-VTG-KVA-----PLIELGAGFDPELTGREN 109 (249)
T ss_pred EEEecCceEEEeCC---CEEEEECCCCCcHHHHHHHHhCccCCCCceEE-Ecc-eEe-----hhhhcccCCCcccchHHH
Confidence 35899999999999 99999999999999999999999999999954 211 111 011111111111111111
Q ss_pred hhhhccCCCCCCchhhHHHHhcCC--chhHHHHH----HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTT--PWNIIDEL----HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~--p~~~l~~l----~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
+ .- ....+-+++ ....++.+ ++ -+.++..+... |.||+-|++++-|...++..+++||-
T Consensus 110 i----------~l--~~~~~G~~~~ei~~~~~eIieFaEL-G~fi~~PvktY--SSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 110 I----------YL--RGLILGLTRKEIDEKVDEIIEFAEL-GDFIDQPVKTY--SSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred H----------HH--HHHHhCccHHHHHHHHHHHHHHHHH-HHHhhCchhhc--cHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 1 00 001111111 11112222 22 24455666666 99999999999888877777777764
No 431
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.55 E-value=2.4e-14 Score=127.58 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-C----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-D----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+- . .|+.+.. |.. .+.. ......+.+|++.|...|..+. ...+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~--~~~-~~~~--~~~~~~l~i~Dt~G~~~~~~~~-----~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT--YRQ-VISC--SKNICTLQITDTTGSHQFPAMQ-----RLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe--EEE-EEEE--CCEEEEEEEEECCCCCcchHHH-----HHHhh
Confidence 47899999999999999999753 2 2222221 111 1111 1234678899999988776652 22233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|++++.+ ++.+..|.+.+++....-
T Consensus 72 ~~~~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~--------------------------------------------- 105 (165)
T cd04140 72 KGHAFILVYSVTSKQS-LEELKPIYELICEIKGNN--------------------------------------------- 105 (165)
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhcCC---------------------------------------------
Confidence 333 467888888766 666666655544432100
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h 245 (415)
...+|+++|+||+|+.. .+.+..++ ...++..+++.++++||+++.+++.+++.|+.
T Consensus 106 ----~~~~piilv~nK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 106 ----IEKIPIMLVGNKCDESH----KREVSSNE-------GAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred ----CCCCCEEEEEECccccc----cCeecHHH-------HHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 01789999999999853 12233322 45677778899999999999999999998863
No 432
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.4e-14 Score=127.57 Aligned_cols=180 Identities=21% Similarity=0.168 Sum_probs=106.1
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-ccc-------cceEEEEEec
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-RED-------HTRLGVWILD 75 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-~~~-------~~~l~i~~l~ 75 (415)
++|+++||+++.| +++++-|++|+||||||++|-+.+.|++|.++.-..-+.-+.- .+. +..+|++ .
T Consensus 25 pV~~~vslsV~aG---ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyV--S 99 (235)
T COG4778 25 PVLRNVSLSVNAG---ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYV--S 99 (235)
T ss_pred eeeeceeEEecCc---cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHH--H
Confidence 6899999999999 9999999999999999999999999999997622111110100 000 0111221 0
Q ss_pred CcccchhhhhhccCCCCCCchhhHH--HHhcCCchhHHHHHHhHHHHHHHHHhhhc------------CChhhHHHHHHH
Q psy13975 76 GEPAHSNLLRFALNQETLPHTMVML--VVSMTTPWNIIDELHNWASVLQDHIDSLN------------IGAHDYQAGRCC 141 (415)
Q Consensus 76 g~~~~~~Ll~~~l~~~~~~~~~v~~--~~d~~~p~~~l~~l~~w~~~l~~~~~~L~------------lSgGekQRl~LA 141 (415)
+| +.. ++ .+....++. .+...-+.. .........+.+|+ +|||||||+.||
T Consensus 100 ---QF---LRv-iP--RV~aLdVvaePll~~gv~~~------~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIa 164 (235)
T COG4778 100 ---QF---LRV-IP--RVSALDVVAEPLLARGVPRE------VARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIA 164 (235)
T ss_pred ---HH---HHh-cc--CcchHHHHHhHHHHcCCCHH------HHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhh
Confidence 01 000 01 111111110 111111110 00112222333333 299999999999
Q ss_pred HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh
Q psy13975 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF 221 (415)
Q Consensus 142 rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~ 221 (415)
|.|...-+.+++|||++ .+|...++.+...+++- ...
T Consensus 165 Rgfivd~pILLLDEPTa------------------------------------------sLDa~Nr~vVveli~e~-Ka~ 201 (235)
T COG4778 165 RGFIVDYPILLLDEPTA------------------------------------------SLDATNRAVVVELIREA-KAR 201 (235)
T ss_pred hhhhccCceEEecCCcc------------------------------------------cccccchHHHHHHHHHH-Hhc
Confidence 99997666666676644 44445566666667654 456
Q ss_pred CCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 222 GAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 222 Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
|++++=.=| -+.+++.+.+|++.+.
T Consensus 202 GaAlvGIFH-----Deevre~vadR~~~~~ 226 (235)
T COG4778 202 GAALVGIFH-----DEEVREAVADRLLDVS 226 (235)
T ss_pred CceEEEeec-----cHHHHHHHhhheeecc
Confidence 998865532 2567888889988753
No 433
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.55 E-value=5.9e-14 Score=146.51 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=111.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccch-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS- 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~- 81 (415)
...|++.+|+|.+| +.+.|.|+||||||||+|.|+|+.+..+|.+. . . ....++++++.+++.
T Consensus 406 ~~ll~~l~~~v~~G---~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~---~-P---------~~~~~lflpQ~PY~p~ 469 (604)
T COG4178 406 QTLLSELNFEVRPG---ERLLITGESGAGKTSLLRALAGLWPWGSGRIS---M-P---------ADSALLFLPQRPYLPQ 469 (604)
T ss_pred CeeeccceeeeCCC---CEEEEECCCCCCHHHHHHHHhccCccCCCcee---c-C---------CCCceEEecCCCCCCC
Confidence 35789999999999 99999999999999999999999998888732 1 1 112356677766543
Q ss_pred -hhhhhccCCC---CCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 82 -NLLRFALNQE---TLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 82 -~Ll~~~l~~~---~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
+|...++-|. .+.+..+..++.......+.+.++ ...++-..| |+|||||+++||.+.++|....+||.+
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~----~~~~W~~vL--S~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLD----EEDRWDRVL--SGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHh----ccCcHhhhc--ChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 2322222221 255555444443333222222221 112223334 999999999999999999888888864
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+ .+|++..+.++|.+++-| .++++|.++|..
T Consensus 544 s------------------------------------------ALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~ 574 (604)
T COG4178 544 S------------------------------------------ALDEETEDRLYQLLKEEL--PDATVISVGHRP 574 (604)
T ss_pred h------------------------------------------ccChHHHHHHHHHHHhhC--CCCEEEEeccch
Confidence 4 456677778888887754 689999999774
No 434
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.54 E-value=5.4e-14 Score=129.59 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCcHHHHHH-HHhC-C---------CCCCCcEEEEece-eec----CCCCccccceEEEEEecCcccchhh
Q psy13975 20 GNILLISDNSSGKTTLIA-KLQG-I---------DSPEKGLALEYAY-INV----SDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~-~l~G-l---------~~p~~G~il~~~~-~~v----~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
-+++|+|+.|+|||||+. ++.+ . +.|+-|.+-.|.. .+. .........++.+|+++|+..+ +
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 479999999999999994 5543 1 1233321011110 000 0011234578999999887532 2
Q ss_pred hhhccCCCCCCchh-hHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhcc
Q psy13975 84 LRFALNQETLPHTM-VMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYL 161 (415)
Q Consensus 84 l~~~l~~~~~~~~~-v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~ 161 (415)
...++++.. +++++|.+++.+ ++.+. .|...+++..
T Consensus 81 -----~~~~~~~ad~iilv~d~t~~~S-f~~~~~~w~~~i~~~~------------------------------------ 118 (195)
T cd01873 81 -----RRFAYGRSDVVLLCFSIASPNS-LRNVKTMWYPEIRHFC------------------------------------ 118 (195)
T ss_pred -----hcccCCCCCEEEEEEECCChhH-HHHHHHHHHHHHHHhC------------------------------------
Confidence 334667776 478899998877 66664 5755443221
Q ss_pred ccCccccCCCccccccccCCcEEEEEeCcchhhhhh---------------hcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 162 FYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLE---------------KDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 162 ~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE---------------~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
+ ++|+++|+||+|+..... +.+.++.++ .+.+|.++|+.++
T Consensus 119 -------~----------~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e-------~~~~a~~~~~~~~ 174 (195)
T cd01873 119 -------P----------RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPET-------GRAVAKELGIPYY 174 (195)
T ss_pred -------C----------CCCEEEEEEchhccccccchhhhcccccccccccCCccCHHH-------HHHHHHHhCCEEE
Confidence 0 679999999999853100 123344433 7899999999999
Q ss_pred EeccCCcccHHHHHHHHHH
Q psy13975 227 YTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 227 ~tS~k~~~n~~~l~~~l~h 245 (415)
+||||++.|++.+|+.++.
T Consensus 175 E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 175 ETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred EcCCCCCCCHHHHHHHHHH
Confidence 9999999999999999874
No 435
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.54 E-value=3e-14 Score=126.77 Aligned_cols=149 Identities=17% Similarity=0.251 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQ-GID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~-Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|++|+|||||++++. |.+ .|+.+. |. ..+.- ......+.+|++.|+.... ++..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~---~~-~~i~~--~~~~~~l~i~D~~g~~~~~----------~~~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGR---FK-KEVLV--DGQSHLLLIRDEGGAPDAQ----------FASW 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccc---eE-EEEEE--CCEEEEEEEEECCCCCchh----------HHhc
Confidence 58999999999999998764 432 333222 21 11211 1234578999999875321 1233
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|...+..+-. .
T Consensus 66 ~~~~ilv~d~~~~~s-f~~~~~~~~~i~~~~~-~---------------------------------------------- 97 (158)
T cd04103 66 VDAVIFVFSLENEAS-FQTVYNLYHQLSSYRN-I---------------------------------------------- 97 (158)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-C----------------------------------------------
Confidence 33 467899999877 6666667554433210 0
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-CeEEEeccCCcccHHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-AGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-asli~tS~k~~~n~~~l~~~l~h~ 246 (415)
-.+|+++|+||+|+... +.+.+++++ .+.+|.+++ +.+++||||++.|++.+|+.++..
T Consensus 98 ----~~~piilvgnK~Dl~~~--~~~~v~~~~-------~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 98 ----SEIPLILVGTQDAISES--NPRVIDDAR-------ARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred ----CCCCEEEEeeHHHhhhc--CCcccCHHH-------HHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 16899999999998531 223344333 567777764 799999999999999999998754
No 436
>PLN03118 Rab family protein; Provisional
Probab=99.54 E-value=3.3e-14 Score=132.24 Aligned_cols=160 Identities=21% Similarity=0.285 Sum_probs=106.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||+++|++- ..|+.|. .+....+.. .....++.+|+++|...|..+. ...+.+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~-----~~~~~~ 85 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGV--DFKIKQLTV--GGKRLKLTIWDTAGQERFRTLT-----SSYYRN 85 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcee--EEEEEEEEE--CCEEEEEEEEECCCchhhHHHH-----HHHHhc
Confidence 58999999999999999999753 2233332 121111111 1234578899999988776662 223444
Q ss_pred hh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 96 TM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
.. +++++|.+++.+ ++.+ ..|...+..+..
T Consensus 86 ~d~~vlv~D~~~~~s-f~~~~~~~~~~~~~~~~----------------------------------------------- 117 (211)
T PLN03118 86 AQGIILVYDVTRRET-FTNLSDVWGKEVELYST----------------------------------------------- 117 (211)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 44 477889888766 4444 345333322110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
..++|+++|+||+|+... +....++ ...++..++..++++|++++.+++.++++|...++..+
T Consensus 118 ----~~~~~~ilv~NK~Dl~~~----~~i~~~~-------~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 118 ----NQDCVKMLVGNKVDRESE----RDVSREE-------GMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred ----CCCCCEEEEEECcccccc----CccCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 016789999999998632 2233222 45567778999999999999999999999999987653
No 437
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.54 E-value=4.8e-14 Score=124.48 Aligned_cols=153 Identities=21% Similarity=0.288 Sum_probs=103.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|||||||+++|.+.. .|+.|.- +....+.- ......+.+|+++|...+..+ ....+..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~-----~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVD--FKVKTLTV--DGKKVKLAIWDTAGQERFRTL-----TSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccce--EEEEEEEE--CCEEEEEEEEECCCchhhhhh-----hHHHhCC
Confidence 68999999999999999998532 3333321 21111111 123467889999997766555 2333444
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|...+.++...
T Consensus 73 ~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~----------------------------------------------- 104 (161)
T cd01863 73 AQGVILVYDVTRRDT-FTNLETWLNELETYSTN----------------------------------------------- 104 (161)
T ss_pred CCEEEEEEECCCHHH-HHhHHHHHHHHHHhCCC-----------------------------------------------
Confidence 44 467788888776 45565565544443311
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
-++|+++|+||+|+.. .....++ .+.++.++++.++++|++++.+++.+++.+.++
T Consensus 105 ----~~~~~~iv~nK~D~~~-----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 105 ----NDIVKMLVGNKIDKEN-----REVTREE-------GLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ----CCCcEEEEEECCcccc-----cccCHHH-------HHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 1789999999999962 1222223 566777889999999999999999999998775
No 438
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.53 E-value=8.1e-14 Score=124.76 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=101.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC-CC-CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchhh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI-DS-PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTMV 98 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl-~~-p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v 98 (415)
+++|+|+.|+|||||++++.+- +. .....+.......+.. ......+.+|+++|+..|..+ ....+....+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~~~~~ 74 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTV--GGKQYLLGLYDTAGQEDYDRL-----RPLSYPMTDV 74 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEE--CCEEEEEEEEeCCCccccccc-----ccccCCCCCE
Confidence 5899999999999999998743 21 1122221111111111 123456789999998877655 4444555553
Q ss_pred -HHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 99 -MLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 99 -~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
++++|..++.+ ++.+ ..|...+.... +
T Consensus 75 ~ilv~~~~~~~s-~~~~~~~~~~~l~~~~----------------------------------------------~---- 103 (174)
T cd04135 75 FLICFSVVNPAS-FQNVKEEWVPELKEYA----------------------------------------------P---- 103 (174)
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhhC----------------------------------------------C----
Confidence 56788888766 3433 34543332210 1
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCC-hhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHH
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYK-EEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~-~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l 247 (415)
++|+++|+||.|+...-+....+. ......-......++.++|. .++++|++++.+++.+|+.++..+
T Consensus 104 ---~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 104 ---NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ---CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 789999999999854210000000 00001112236677888886 699999999999999999998765
No 439
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.53 E-value=2.2e-14 Score=135.20 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=50.7
Q ss_pred HHHHhhhcCChhhHHHHHHHHHhhccc--ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhc
Q psy13975 122 QDHIDSLNIGAHDYQAGRCCKLLTFAR--LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKD 199 (415)
Q Consensus 122 ~~~~~~L~lSgGekQRl~LArAl~~~~--~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~ 199 (415)
++.+..| |+||+||++|||++..++ ..+++||| +
T Consensus 132 ~~~~~~L--SgG~~qrv~laral~~~p~~~llllDEP------------------------------------------t 167 (226)
T cd03270 132 SRSAPTL--SGGEAQRIRLATQIGSGLTGVLYVLDEP------------------------------------------S 167 (226)
T ss_pred cCccCcC--CHHHHHHHHHHHHHHhCCCCCEEEEeCC------------------------------------------c
Confidence 3344444 999999999999999655 24455554 4
Q ss_pred ccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 200 FYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 200 ~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
.+++....+.+.+.+++++. .|.+++++||..
T Consensus 168 ~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~ 199 (226)
T cd03270 168 IGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDE 199 (226)
T ss_pred cCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCH
Confidence 67788889999999999875 599999999553
No 440
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.53 E-value=2.6e-14 Score=130.67 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=105.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQG-ID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G-l~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|..|+|||||+++|.+ .. .|+.|.. |. ..+ ........+.+|+++|...|..+ ...++..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~--~~-~~~--~~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~ 70 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS--YR-KQV--VVDGQPCMLEVLDTAGQEEYTAL-----RDQWIRE 70 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh--EE-EEE--EECCEEEEEEEEECCCchhhHHH-----HHHHHHh
Confidence 478999999999999999963 22 2333321 11 011 01123456889999998877666 3334445
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|...+....... .
T Consensus 71 ad~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~------------------------------------------~--- 104 (190)
T cd04144 71 GEGFILVYSITSRST-FERVERFREQIQRVKDES------------------------------------------A--- 104 (190)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHHhccc------------------------------------------C---
Confidence 55 357788888766 666767755444332100 0
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
-.+|+++|+||+|+.. ++.+..++ ...++..+|+.++.+||+++.|++.++.+++..+..
T Consensus 105 ----~~~piilvgNK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 105 ----ADVPIMIVGNKCDKVY----EREVSTEE-------GAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred ----CCCCEEEEEEChhccc----cCccCHHH-------HHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1689999999999853 12333222 456777889999999999999999999999987764
No 441
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.53 E-value=3.2e-14 Score=139.59 Aligned_cols=165 Identities=21% Similarity=0.155 Sum_probs=105.6
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhh
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLR 85 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~ 85 (415)
+..||++|.+| +.|.|+|.||||||||++.++|+++|++|.++ +++..+..+..++ |+.|..
T Consensus 339 vgPiNl~ikrG---elvFliG~NGsGKST~~~LLtGL~~PqsG~I~-ldg~pV~~e~led--------------YR~LfS 400 (546)
T COG4615 339 VGPINLTIKRG---ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL-LDGKPVSAEQLED--------------YRKLFS 400 (546)
T ss_pred ecceeeEEecC---cEEEEECCCCCcHHHHHHHHhcccCCCCCcee-ECCccCCCCCHHH--------------HHHHHH
Confidence 45789999999 99999999999999999999999999999987 5655554433322 222211
Q ss_pred hccCCCCCCchhhHHHHh-cCCc---hhHHHHHHhH--HHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 86 FALNQETLPHTMVMLVVS-MTTP---WNIIDELHNW--ASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 86 ~~l~~~~~~~~~v~~~~d-~~~p---~~~l~~l~~w--~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
-++..-.+.+..+ ..+ ...| ..|++.++.- ....+.....++||.|||+|+++.-||.+.|..+.+||=.
T Consensus 401 avFsDyhLF~~ll--~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA-- 476 (546)
T COG4615 401 AVFSDYHLFDQLL--GPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWA-- 476 (546)
T ss_pred HHhhhHhhhHhhh--CCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhh--
Confidence 1111000000000 000 0111 1233333321 1122334455678999999999999999777776666631
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
.+-|+.-+.++++.+--...+.|-++|-+||-+
T Consensus 477 ----------------------------------------ADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 477 ----------------------------------------ADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred ----------------------------------------ccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 122445567777877777788999999999865
No 442
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.52 E-value=9.7e-14 Score=124.36 Aligned_cols=164 Identities=18% Similarity=0.302 Sum_probs=100.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
++++|+|+.|||||||++++.+... |+.+.. + ...+. . ......+.+|+++|...+..+ ....+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~--~-~~~~~-~-~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 71 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN--Y-VADIE-V-DGKQVELALWDTAGQEDYDRL-----RPLSYP 71 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccc--e-EEEEE-E-CCEEEEEEEEeCCCchhhhhc-----cccccC
Confidence 6899999999999999999986322 222221 1 11111 1 123456789999998776555 333445
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
+.. +++++|.+++.+ ++.+ ..|...+....
T Consensus 72 ~~d~~i~v~~~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 103 (175)
T cd01870 72 DTDVILMCFSIDSPDS-LENIPEKWTPEVKHFC----------------------------------------------- 103 (175)
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhC-----------------------------------------------
Confidence 544 356678877655 3333 34533322111
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCCh-hhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKE-EHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~-e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l 247 (415)
.++|+++|+||+|+....+....+.. ..........+.++..+|. .+++||++++.+++.+|+++.+..
T Consensus 104 ------~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 104 ------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ------CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 16899999999998642111000000 0011112346788888886 799999999999999999997653
No 443
>KOG0061|consensus
Probab=99.52 E-value=1.3e-13 Score=147.27 Aligned_cols=183 Identities=17% Similarity=0.072 Sum_probs=114.5
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC---CCcEEEEeceeecCCCCccccceEEEEEecCcc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP---EKGLALEYAYINVSDEYREDHTRLGVWILDGEP 78 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p---~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~ 78 (415)
.+.+|++||..+.+| +..+|+|++||||||||++|+|.... .+|.++ +++... ..+.-+...+++.++. .
T Consensus 42 ~k~iL~~vsg~~~~G---el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~il-vNG~~~--~~~~~~~~s~yV~QdD-~ 114 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPG---ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEIL-LNGRPR--DSRSFRKISGYVQQDD-V 114 (613)
T ss_pred cceeeeCcEEEEecC---eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEE-ECCccC--chhhhhheeEEEcccc-c
Confidence 367999999999999 99999999999999999999997654 567766 433111 1122234445543332 2
Q ss_pred cchhhhhhccCCCCCCchhhH-HHHhcCC----------chhHHHHHHhHHHHHHHHHhh---hcCChhhHHHHHHHHHh
Q psy13975 79 AHSNLLRFALNQETLPHTMVM-LVVSMTT----------PWNIIDELHNWASVLQDHIDS---LNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 79 ~~~~Ll~~~l~~~~~~~~~v~-~~~d~~~----------p~~~l~~l~~w~~~l~~~~~~---L~lSgGekQRl~LArAl 144 (415)
.+..| +++++..+ ..+.+.. ...+++++.+. +..+..+.. -++|||||+||.+|.-+
T Consensus 115 l~~~L--------TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 115 LLPTL--------TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVSIALEL 185 (613)
T ss_pred ccccc--------cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHHHHHHH
Confidence 22222 22222211 1111111 01223333331 222222221 13599999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..+|..+.+|||+ .|+|.-.--.+.+.||++|.+ |.+
T Consensus 186 l~~P~iLflDEPT------------------------------------------SGLDS~sA~~vv~~Lk~lA~~-grt 222 (613)
T KOG0061|consen 186 LTDPSILFLDEPT------------------------------------------SGLDSFSALQVVQLLKRLARS-GRT 222 (613)
T ss_pred HcCCCEEEecCCC------------------------------------------CCcchhhHHHHHHHHHHHHhC-CCE
Confidence 9777777777664 456555566788999999998 999
Q ss_pred EEEeccCCcccHHHHHHHH
Q psy13975 225 LFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 225 li~tS~k~~~n~~~l~~~l 243 (415)
++.|=|.....+=.+|+-+
T Consensus 223 Vi~tIHQPss~lf~lFD~l 241 (613)
T KOG0061|consen 223 VICTIHQPSSELFELFDKL 241 (613)
T ss_pred EEEEEeCCcHHHHHHHhHh
Confidence 9998887777664444444
No 444
>KOG0060|consensus
Probab=99.52 E-value=1e-13 Score=141.61 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=96.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccch-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS- 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~- 81 (415)
..+++|+||+|+.| .++.|.||||||||+|+|.|.|+.+...|.+.-+ .+.. . -+++++++-|++.
T Consensus 448 ~~lie~Ls~~V~~g---~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~--~~~~-----~---~~lfflPQrPYmt~ 514 (659)
T KOG0060|consen 448 DLLIENLSLEVPSG---QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKP--TDGG-----P---KDLFFLPQRPYMTL 514 (659)
T ss_pred ceeeeeeeeEecCC---CeEEEECCCCCchhHHHHHHhcccccCCCeEEec--ccCC-----C---CceEEecCCCCccc
Confidence 45678899999999 9999999999999999999999999888884411 1110 0 2356667666542
Q ss_pred -hhhhhccCC--------CCCCchhhHHHHhcCCchhHHHHHHhHH-HHHHHHHhhhcCChhhHHHHHHHHHhhcccccc
Q psy13975 82 -NLLRFALNQ--------ETLPHTMVMLVVSMTTPWNIIDELHNWA-SVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 82 -~Ll~~~l~~--------~~~~~~~v~~~~d~~~p~~~l~~l~~w~-~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~ 151 (415)
.|-.-++-| ....+..+...+++.+...+++..+.|. +...++.+.| |+||+||+++||-+..+|...
T Consensus 515 GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvL--S~GEqQRLa~ARLfy~kPk~A 592 (659)
T KOG0060|consen 515 GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVL--SPGEQQRLAFARLFYHKPKFA 592 (659)
T ss_pred cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhc--CHHHHHHHHHHHHHhcCCceE
Confidence 221111111 1222223333344444445566666663 2456778888 999999999999999999998
Q ss_pred cchhhhh
Q psy13975 152 HLIELLS 158 (415)
Q Consensus 152 ~lde~~s 158 (415)
++||-++
T Consensus 593 iLDE~TS 599 (659)
T KOG0060|consen 593 ILDECTS 599 (659)
T ss_pred Eeechhh
Confidence 9888655
No 445
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.51 E-value=9.4e-14 Score=124.08 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=101.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|||||||++++.+-. .|+.+.. | ...+. .......+.+|+++|...|..+ ....+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~--~-~~~~~--~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~ 71 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS--Y-RKQVE--IDGRQCDLEILDTAGTEQFTAM-----RELYIK 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe--E-EEEEE--ECCEEEEEEEEeCCCcccchhh-----hHHHHh
Confidence 368999999999999999987422 2222221 1 11111 1123367889999998877666 333333
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+....
T Consensus 72 ~~~~~vlv~~~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------------- 104 (168)
T cd04177 72 SGQGFLLVYSVTSEAS-LNELGELREQVLRIKDS---------------------------------------------- 104 (168)
T ss_pred hCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhCC----------------------------------------------
Confidence 333 356778877665 55566664444332210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-CeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-AGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-asli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+... +....++ ...++.+++ ..++++||+.+.+++.++++++..++
T Consensus 105 -----~~~piiiv~nK~D~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 105 -----DNVPMVLVGNKADLEDD----RQVSRED-------GVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred -----CCCCEEEEEEChhcccc----CccCHHH-------HHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 17899999999998531 2222222 455666778 78999999999999999999987654
No 446
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.51 E-value=1.6e-13 Score=121.45 Aligned_cols=156 Identities=14% Similarity=0.175 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC---CCC--CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI---DSP--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl---~~p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|||||||++++.+. ... ..+.+.++....+.- .......+.+|+++|...+..+. ...+.+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~~~-----~~~~~~ 75 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPV-DTDNTVELFIFDSAGQELYSDMV-----SNYWES 75 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEe-CCCCEEEEEEEECCCHHHHHHHH-----HHHhCC
Confidence 6899999999999999999632 211 112222222222211 12345678899999987766653 223344
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|++++.+ ++.+..|.+.+....
T Consensus 76 ~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~------------------------------------------------- 105 (164)
T cd04101 76 PSVFILVYDVSNKAS-FENCSRWVNKVRTAS------------------------------------------------- 105 (164)
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHHHHHhC-------------------------------------------------
Confidence 44 467788887665 455566643322211
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
.++|+++|+||+|+... ...+.+. .+.++..+|..++++|++++.+++.+++.+.+.+
T Consensus 106 ----~~~p~ilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 106 ----KHMPGVLVGNKMDLADK----AEVTDAQ-------AQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ----CCCCEEEEEECcccccc----cCCCHHH-------HHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 16899999999998532 2223222 3456667788999999999999999999998754
No 447
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.50 E-value=1.4e-13 Score=120.96 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-CC--CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDS-PE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~-p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|+|||||++++.+... +. ......+....+.. ......+.+|+++|...+..+ .+..+.+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~~~-----~~~~~~~~~ 74 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI--GGKRIDLAIWDTAGQERYHAL-----GPIYYRDAD 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE--CCEEEEEEEEECCchHHHHHh-----hHHHhccCC
Confidence 689999999999999999985422 11 11111111111111 123356889999997766655 222334444
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|.+++.+ ++.+..|...+.... ..
T Consensus 75 ~~i~v~d~~~~~s-~~~~~~~~~~i~~~~---------------------------------------------~~---- 104 (162)
T cd04123 75 GAILVYDITDADS-FQKVKKWIKELKQMR---------------------------------------------GN---- 104 (162)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhC---------------------------------------------CC----
Confidence 466778877655 455555543332221 01
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
++|+++|+||+|+... ..+.+++ ++.++..++..++++|++++.+++.+++.+.+.+
T Consensus 105 ---~~piiiv~nK~D~~~~----~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 105 ---NISLVIVGNKIDLERQ----RVVSKSE-------AEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred ---CCeEEEEEECcccccc----cCCCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 6899999999998631 2333333 4556667899999999999999999999987654
No 448
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.50 E-value=1.5e-13 Score=122.31 Aligned_cols=157 Identities=22% Similarity=0.326 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-CCCCCCCcE--EEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-GIDSPEKGL--ALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-Gl~~p~~G~--il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|++|||||||++++. +...+..+. ...+....+. .......+.+|+++|...+.... ...+...
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~-----~~~~~~~ 80 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE--IKGEKIKLQIWDTAGQERFRSIT-----QSYYRSA 80 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEE--ECCEEEEEEEEECCCcHHHHHHH-----HHHhcCC
Confidence 689999999999999999997 444443332 1112111111 11233567899999877665552 2223333
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|...++....
T Consensus 81 d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~------------------------------------------------- 110 (169)
T cd04114 81 NALILTYDITCEES-FRCLPEWLREIEQYAN------------------------------------------------- 110 (169)
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHHHHhCC-------------------------------------------------
Confidence 3 456778777655 4555566443322210
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
-++|+++|+||+|+... +.+..+ ..+.+.......++.+|++++.+++.+++.+..++
T Consensus 111 ---~~~~~i~v~NK~D~~~~----~~i~~~-------~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 111 ---NKVITILVGNKIDLAER----REVSQQ-------RAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred ---CCCeEEEEEECcccccc----cccCHH-------HHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 16899999999998531 222222 24556666678899999999999999999998654
No 449
>KOG0054|consensus
Probab=99.50 E-value=1e-13 Score=155.91 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=115.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~~ 81 (415)
..||+||||+|.+| ++|||||..|||||||+..|-++.+|.+|.+. .++.|+....-. -+.+++|..++.. .|.
T Consensus 1153 p~VLk~is~~I~p~---eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~-IDgvdI~~igL~dLRsrlsIIPQdPv-LFs 1227 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPG---EKVGIVGRTGAGKSSLILALFRLVEPAEGEIL-IDGVDISKIGLHDLRSRLSIIPQDPV-LFS 1227 (1381)
T ss_pred cchhcCceEEEcCC---ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEE-EcCeecccccHHHHHhcCeeeCCCCc-eec
Confidence 36899999999999 99999999999999999999999999999977 778887665433 3566666543322 233
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhh---------cCChhhHHHHHHHHHhhcccccc
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSL---------NIGAHDYQAGRCCKLLTFARLRA 151 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L---------~lSgGekQRl~LArAl~~~~~~~ 151 (415)
.-+.+.+ +-..+.+. +.|..++..++ .+.+.+....| ++|-||||-++||||+.++...+
T Consensus 1228 GTvR~NLDPf~e~sD~---------~IW~ALe~~~L-k~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skIL 1297 (1381)
T KOG0054|consen 1228 GTVRFNLDPFDEYSDD---------EIWEALERCQL-KDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKIL 1297 (1381)
T ss_pred CccccccCcccccCHH---------HHHHHHHHhCh-HHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEE
Confidence 2223322 22233332 23444554444 23333333222 25999999999999999888888
Q ss_pred cchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 152 HLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 152 ~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+||.++ .+|.+--..||+.+|+-. .+++++-+-
T Consensus 1298 vLDEATA------------------------------------------sVD~~TD~lIQ~tIR~~F--~dcTVltIA 1331 (1381)
T KOG0054|consen 1298 VLDEATA------------------------------------------SVDPETDALIQKTIREEF--KDCTVLTIA 1331 (1381)
T ss_pred EEecccc------------------------------------------cCChHHHHHHHHHHHHHh--cCCeEEEEe
Confidence 8888644 344455557888999753 367887653
No 450
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.49 E-value=7.8e-14 Score=128.77 Aligned_cols=153 Identities=12% Similarity=0.161 Sum_probs=94.7
Q ss_pred CCe-eeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE--------EEeceeecCCCCccccceEEEEEe
Q psy13975 4 PYY-DVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLA--------LEYAYINVSDEYREDHTRLGVWIL 74 (415)
Q Consensus 4 ~iL-~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~i--------l~~~~~~v~~~~~~~~~~l~i~~l 74 (415)
.-+ ++++|++.+| +++|+|+||||||||+++|.|+..+..|.. +.+...+... .....+++++++
T Consensus 10 r~~~~~~~l~~~~g----~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~vfq 83 (197)
T cd03278 10 KSFADKTTIPFPPG----LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK--PANFAEVTLTFD 83 (197)
T ss_pred cCcCCCeeeecCCC----cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC--CCceEEEEEEEE
Confidence 346 7789999988 899999999999999999998876553321 1111111111 112345555544
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc----cccc
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF----ARLR 150 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~----~~~~ 150 (415)
.....|. .. .. .+.+.+++. ....++.+..| |+||+||++||+++.. .+..
T Consensus 84 ~~~~~~~------~~----~~---------~~~~~~l~~----~~~~~~~~~~L--S~G~kqrl~la~~l~~~~~~~~~i 138 (197)
T cd03278 84 NSDGRYS------II----SQ---------GDVSEIIEA----PGKKVQRLSLL--SGGEKALTALALLFAIFRVRPSPF 138 (197)
T ss_pred cCCCcee------EE----eh---------hhHHHHHhC----CCccccchhhc--CHHHHHHHHHHHHHHHhccCCCCE
Confidence 4322210 00 00 111122222 12334556666 9999999999999862 2233
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++|| |+.+++.+..+.+.+.|++++. +++++++||
T Consensus 139 lllDE------------------------------------------P~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH 174 (197)
T cd03278 139 CVLDE------------------------------------------VDAALDDANVERFARLLKEFSK--ETQFIVITH 174 (197)
T ss_pred EEEeC------------------------------------------CcccCCHHHHHHHHHHHHHhcc--CCEEEEEEC
Confidence 34444 5567888888999999998853 688999995
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 175 ~ 175 (197)
T cd03278 175 R 175 (197)
T ss_pred C
Confidence 5
No 451
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.49 E-value=1.7e-13 Score=122.06 Aligned_cols=160 Identities=20% Similarity=0.322 Sum_probs=102.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-C----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-S----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|||||||++++.+-. . ++.|. .+....+. .......+.+|+++|...+..+. ...+.+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~-----~~~~~~ 72 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA--DFLTKEVT--VDDKLVTLQIWDTAGQERFQSLG-----VAFYRG 72 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccce--EEEEEEEE--ECCEEEEEEEEeCCChHHHHhHH-----HHHhcC
Confidence 68999999999999999997532 2 22222 12211111 11234567899999987666552 223444
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|..++.+ ++.+..|...+......
T Consensus 73 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~----------------------------------------------- 104 (172)
T cd01862 73 ADCCVLVYDVTNPKS-FESLDSWRDEFLIQASP----------------------------------------------- 104 (172)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCc-----------------------------------------------
Confidence 44 456778777655 45555664332222110
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-CeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-AGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-asli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
....++|+++|+||+|+.. ......++ ++.++..+| ..++++|++++.+++.++..+.+.++.
T Consensus 105 -~~~~~~p~ilv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 105 -SDPENFPFVVLGNKIDLEE----KRQVSTKK-------AQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred -cCCCCceEEEEEECccccc----ccccCHHH-------HHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 0012789999999999974 12223333 566777777 689999999999999999999887765
No 452
>KOG0086|consensus
Probab=99.49 E-value=7.7e-14 Score=119.89 Aligned_cols=158 Identities=16% Similarity=0.239 Sum_probs=120.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC---CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI---DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl---~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|+|||+||..+... .+.....+++|...-+.. .....++.||++.|++.|++. +..+|+...
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV--GgK~vKLQIWDTAGQErFRSV-----tRsYYRGAA 83 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV--GGKTVKLQIWDTAGQERFRSV-----TRSYYRGAA 83 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee--cCcEEEEEEeecccHHHHHHH-----HHHHhcccc
Confidence 6889999999999999998742 233344555555433221 346788999999999999988 777888877
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
.++++|.+...+ ++.|..|...++.... +
T Consensus 84 GAlLVYD~Tsrds-fnaLtnWL~DaR~lAs---------------------------------------------~---- 113 (214)
T KOG0086|consen 84 GALLVYDITSRDS-FNALTNWLTDARTLAS---------------------------------------------P---- 113 (214)
T ss_pred ceEEEEeccchhh-HHHHHHHHHHHHhhCC---------------------------------------------C----
Confidence 478899988776 7888888654433331 1
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.+-++++++|.|+- +++.++-++ .-+||.+.-..+++||+++|.|+++.|-.....++.
T Consensus 114 ---nIvviL~GnKkDL~----~~R~VtflE-------As~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 114 ---NIVVILCGNKKDLD----PEREVTFLE-------ASRFAQENELMFLETSALTGENVEEAFLKCARTILN 172 (214)
T ss_pred ---cEEEEEeCChhhcC----hhhhhhHHH-------HHhhhcccceeeeeecccccccHHHHHHHHHHHHHH
Confidence 67889999999984 445555444 678999999999999999999999999888877764
No 453
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.49 E-value=8.2e-14 Score=123.87 Aligned_cols=155 Identities=17% Similarity=0.272 Sum_probs=99.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-----CCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc-hhhhhhccCCCCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQG-----IDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-SNLLRFALNQETLP 94 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G-----l~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-~~Ll~~~l~~~~~~ 94 (415)
+++|+|+.|+|||||+.++.+ .+.++.+... . ..+ ........+.+|++.|...+ .... ...+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~--~-~~~--~~~~~~~~~~i~D~~g~~~~~~~~~-----~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY--S-RQV--TIDGEQVSLEILDTAGQQQADTEQL-----ERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc--e-EEE--EECCEEEEEEEEECCCCcccccchH-----HHHHH
Confidence 479999999999999988753 2233332211 1 011 00123456889999987642 2221 11233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
.+. +++++|++++.+ ++.+..|...+.+... .
T Consensus 71 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------~--- 103 (165)
T cd04146 71 WADGFVLVYSITDRSS-FDEISQLKQLIREIKK-------------------------------------------R--- 103 (165)
T ss_pred hCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhc-------------------------------------------C---
Confidence 333 467889988766 6777777555443221 0
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCc-ccHHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKED-KNCDLLYKYLAHRL 247 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~-~n~~~l~~~l~h~l 247 (415)
..++|+++|+||+|+.. .+.++.++ +.++|..+|+.++++|++++ .+++.+|+.++..+
T Consensus 104 ----~~~~piilv~nK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 104 ----DREIPVILVGNKADLLH----YRQVSTEE-------GEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred ----CCCCCEEEEEECCchHH----hCccCHHH-------HHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 01789999999999853 23333333 56778888999999999999 59999999998654
No 454
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.49 E-value=1.6e-13 Score=121.05 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=98.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++++|+.|+|||||++++.+... ++.+.. + .... ........+.+|+++|...+..+... .+.+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~--~-~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~~ 71 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS--Y-RKKV--VLDGEDVQLNILDTAGQEDYAAIRDN-----YHRS 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh--E-EEEE--EECCEEEEEEEEECCChhhhhHHHHH-----Hhhc
Confidence 689999999999999999975432 121211 1 1111 11123456889999988776655322 2333
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|...+.+ ++.+..|...+.+...
T Consensus 72 ~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~------------------------------------------------ 102 (164)
T cd04139 72 GEGFLLVFSITDMES-FTATAEFREQILRVKD------------------------------------------------ 102 (164)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC------------------------------------------------
Confidence 33 356677777655 4444444333222211
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
...+|+++|+||+|+... .....+. .+.++.++|..++++|++++.+++.+++.+.+++-
T Consensus 103 ---~~~~piiiv~NK~D~~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 103 ---DDNVPLLLVGNKCDLEDK----RQVSSEE-------AANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred ---CCCCCEEEEEEccccccc----cccCHHH-------HHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 117899999999999641 1111122 45677778899999999999999999999987763
No 455
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.48 E-value=2.2e-13 Score=121.22 Aligned_cols=165 Identities=18% Similarity=0.248 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh-
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSP--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM- 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~- 97 (415)
+++|+|+.|||||||+++|.+-..+ ....+........ ........+.+|+++|...+..+ ....+....
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~D~~g~~~~~~~-----~~~~~~~~~~ 74 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATV--TVDGKQVNLGLWDTAGQEEYDRL-----RPLSYPNTDV 74 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEE--EECCEEEEEEEEeCCCccccccc-----chhhcCCCCE
Confidence 5889999999999999999854321 1111110111111 11123456889999987765444 333344444
Q ss_pred hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccccc
Q psy13975 98 VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILER 177 (415)
Q Consensus 98 v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~ 177 (415)
+++++|.+++.++......|...+....
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---------------------------------------------------- 102 (171)
T cd00157 75 FLICFSVDSPSSFENVKTKWIPEIRHYC---------------------------------------------------- 102 (171)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC----------------------------------------------------
Confidence 4677888887664444444532222211
Q ss_pred ccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHH
Q psy13975 178 NLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 178 nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h 245 (415)
.++|+++|+||+|+...-.......+.....-.+..++++..++. .++++|++++.+++.++.++..
T Consensus 103 -~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 103 -PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred -CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 068999999999997532110000000000112236678888888 8999999999999999998864
No 456
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.48 E-value=2.6e-13 Score=119.60 Aligned_cols=155 Identities=21% Similarity=0.297 Sum_probs=100.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC---CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDS---PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~---p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++|+|+.|+|||||++.+.+... ...+...++....+.. .....++.+|+++|...+..+... .+.+..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~D~~G~~~~~~~~~~-----~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL--EDKTVRLQLWDTAGQERFRSLIPS-----YIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHH-----HhccCC
Confidence 689999999999999999976421 1223322222222211 123357889999998877665322 233334
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|++++.+ ++.+..|...+....
T Consensus 75 ~ii~v~d~~~~~s-~~~~~~~~~~~~~~~--------------------------------------------------- 102 (161)
T cd01861 75 VAVVVYDITNRQS-FDNTDKWIDDVRDER--------------------------------------------------- 102 (161)
T ss_pred EEEEEEECcCHHH-HHHHHHHHHHHHHhC---------------------------------------------------
Confidence 467788888766 455555533322111
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
+.++|+++|+||+|+... .....++ ...++..+++.++.+|++++.+++.+++.+...
T Consensus 103 -~~~~~iilv~nK~D~~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 103 -GNDVIIVLVGNKTDLSDK----RQVSTEE-------GEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred -CCCCEEEEEEEChhcccc----CccCHHH-------HHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 016899999999999521 1222222 456667788999999999999999999998653
No 457
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.47 E-value=2.7e-13 Score=119.83 Aligned_cols=155 Identities=21% Similarity=0.318 Sum_probs=102.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|||||||++++.+.. .++.|..+ ....+.. ......+.+|+.+|...+..+. ...+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~v~~--~~~~~~~~i~D~~G~~~~~~~~-----~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAF--LTQTVNL--DDTTVKFEIWDTAGQERYRSLA-----PMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE--EEEEEEE--CCEEEEEEEEeCCchHHHHHHH-----HHHhc
Confidence 378999999999999999998642 33444322 1122211 1234568899999987665552 22334
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++....|...+....
T Consensus 73 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~------------------------------------------------ 103 (163)
T cd01860 73 GAAAAIVVYDITSEES-FEKAKSWVKELQRNA------------------------------------------------ 103 (163)
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHhC------------------------------------------------
Confidence 444 467788887665 455555543332221
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
+-++|++||+||+|+... +....++ +..+|..++..++.+|++++.+++.++..++.++
T Consensus 104 ----~~~~~iivv~nK~D~~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 104 ----SPNIIIALVGNKADLESK----RQVSTEE-------AQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred ----CCCCeEEEEEECcccccc----CcCCHHH-------HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 017899999999998631 2222222 5667888899999999999999999999998764
No 458
>KOG0088|consensus
Probab=99.47 E-value=5.2e-14 Score=121.61 Aligned_cols=160 Identities=19% Similarity=0.295 Sum_probs=119.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-CCCCC--cEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-DSPEK--GLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~~p~~--G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++++|+-.+|||+|+-+++.. +.... +.--.|....+ ...+.++.++||+++|++.|..| .+-+|++.
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~--n~ed~ra~L~IWDTAGQErfHAL-----GPIYYRgS 86 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKV--NVEDCRADLHIWDTAGQERFHAL-----GPIYYRGS 86 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccc--ccccceeeeeeeeccchHhhhcc-----CceEEeCC
Confidence 47889999999999999888732 21110 00000111112 12345788999999999999888 78888888
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|+++..+ |..++.|...++..+..
T Consensus 87 nGalLVyDITDrdS-FqKVKnWV~Elr~mlGn------------------------------------------------ 117 (218)
T KOG0088|consen 87 NGALLVYDITDRDS-FQKVKNWVLELRTMLGN------------------------------------------------ 117 (218)
T ss_pred CceEEEEeccchHH-HHHHHHHHHHHHHHhCC------------------------------------------------
Confidence 7 578899999877 78888897666655521
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
-+-+++|+||.|+ |+++.++- |....+|...||.++.||+|++..+..+|..+..+++..
T Consensus 118 ----ei~l~IVGNKiDL----EeeR~Vt~-------qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 118 ----EIELLIVGNKIDL----EEERQVTR-------QEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred ----eeEEEEecCcccH----HHhhhhhH-------HHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHH
Confidence 4678999999999 44455543 347789999999999999999999999999998888764
No 459
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.46 E-value=4.1e-13 Score=123.99 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh--hh-ccCCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL--RF-ALNQET 92 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll--~~-~l~~~~ 92 (415)
+++|+|+.|+|||||++++.+-. .|+.+.-. +. ..+ ...+...++.+|+++|...+.... .. ......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~-~~-~~i--~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~ 77 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRL-YR-PAV--VLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG 77 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCcccccc-ce-eEE--EECCEEEEEEEEeCCCcccCCccchhHHHHHHHhh
Confidence 68999999999999999987532 23333211 10 011 112234678899998854332110 00 001123
Q ss_pred CCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCC
Q psy13975 93 LPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPG 171 (415)
Q Consensus 93 ~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~ 171 (415)
+.++. +++++|.+++++ ++.+..|.+.+.+....
T Consensus 78 ~~~ad~iilv~D~~~~~S-~~~~~~~~~~i~~~~~~-------------------------------------------- 112 (198)
T cd04142 78 LRNSRAFILVYDICSPDS-FHYVKLLRQQILETRPA-------------------------------------------- 112 (198)
T ss_pred hccCCEEEEEEECCCHHH-HHHHHHHHHHHHHhccc--------------------------------------------
Confidence 44555 467889888776 56666664433332210
Q ss_pred ccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHH-HhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 172 EGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCL-KFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 172 e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~-~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.+-++|+++|+||+|+... +....+. ++.++. .+++.+++||++++.|++.+|+.++..++..
T Consensus 113 -----~~~~~piiivgNK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 113 -----GNKEPPIVVVGNKRDQQRH----RFAPRHV-------LSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred -----CCCCCCEEEEEECcccccc----ccccHHH-------HHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 0017899999999999531 1122222 344543 4688999999999999999999999888853
No 460
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.46 E-value=1.4e-13 Score=120.61 Aligned_cols=153 Identities=17% Similarity=0.237 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|||||||++++.+.. .++.+... ..... ......++.+|+.+|...+..+... .+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~-----~~~~ 70 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSY---RKTIV--VDGETYTLDILDTAGQEEFSAMRDL-----YIRQ 70 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeE---EEEEE--ECCEEEEEEEEECCChHHHHHHHHH-----HHhc
Confidence 47999999999999999997542 22222111 11110 0112456788999987766555222 2233
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|...+......
T Consensus 71 ~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~----------------------------------------------- 102 (160)
T cd00876 71 GDGFILVYSITDRES-FEEIKGYREQILRVKDD----------------------------------------------- 102 (160)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC-----------------------------------------------
Confidence 33 456778877665 44444442222222100
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
.++|+++|+||+|+... ...+. +.++.++.+++..++.+|++++.+++.++++|.++
T Consensus 103 ----~~~p~ivv~nK~D~~~~----~~~~~-------~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 103 ----EDIPIVLVGNKCDLENE----RQVSK-------EEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred ----CCCcEEEEEECCccccc----ceecH-------HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 17899999999999741 22222 23677777888899999999999999999999865
No 461
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.46 E-value=3.4e-13 Score=117.28 Aligned_cols=153 Identities=21% Similarity=0.326 Sum_probs=98.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC---CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSP---EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p---~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
+++++|+.|+|||||++.+.+...+ ..+....+....+.. ......+.+|+++|...+..+... .+.+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~-----~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI--DGKTVKLQIWDTAGQERFRSITPS-----YYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE--CCEEEEEEEEecCChHHHHHHHHH-----HhcCCC
Confidence 5899999999999999999865322 122222222222211 123466789999998766655222 233344
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|..++.. ++.+..|...+.....
T Consensus 75 ~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~-------------------------------------------------- 103 (159)
T cd00154 75 GAILVYDITNRES-FENLDKWLKELKEYAP-------------------------------------------------- 103 (159)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhCC--------------------------------------------------
Confidence 366778777544 5555555433322210
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHH
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLA 244 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~ 244 (415)
.++|++||+||+|+... ..... ..++.++.+++..++++|++++.+++.++..|.
T Consensus 104 --~~~p~ivv~nK~D~~~~----~~~~~-------~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 104 --ENIPIILVGNKIDLEDQ----RQVST-------EEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred --CCCcEEEEEEccccccc----ccccH-------HHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 17899999999999621 12222 236777777899999999999999999999875
No 462
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=6.2e-13 Score=114.98 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=84.7
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeecCCCCccccceEEEEEecCcccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE---KGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~---~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~ 80 (415)
-.|.+|||+|.+| +++-|+||+|||||||+.-+.|...+. .|+.. .+..++... ......+++.+++.- .|
T Consensus 16 cLLa~~n~Tia~G---eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~-l~~~~l~~l-Pa~qRq~GiLFQD~l-LF 89 (213)
T COG4136 16 CLLANVNFTIAKG---EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELW-LNEQRLDML-PAAQRQIGILFQDAL-LF 89 (213)
T ss_pred eEEEeeeEEecCC---cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEE-ECCeecccc-chhhhheeeeecccc-cc
Confidence 3578999999999 999999999999999999999977654 46643 333333221 223345666554431 12
Q ss_pred hhh-----hhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 81 SNL-----LRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 81 ~~L-----l~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
..+ +-|++++ .+....-. ......++...+ .....+-.+.+ |||||-|+++.|++...|..+++||
T Consensus 90 phlsVg~Nl~fAlp~-~~KG~aRr-----~~a~aAL~~~gL-~g~f~~dP~tl--SGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 90 PHLSVGQNLLFALPA-TLKGNARR-----NAANAALERSGL-DGAFHQDPATL--SGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred cccccccceEEecCc-ccccHHHH-----hhHHHHHHHhcc-chhhhcChhhc--CcchHHHHHHHHHHHhCcceeeeCC
Confidence 111 1112211 11111000 001122333333 23445555666 9999999999999998888888888
Q ss_pred hhh
Q psy13975 156 LLS 158 (415)
Q Consensus 156 ~~s 158 (415)
|.|
T Consensus 161 PFS 163 (213)
T COG4136 161 PFS 163 (213)
T ss_pred chh
Confidence 754
No 463
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.1e-13 Score=137.00 Aligned_cols=149 Identities=12% Similarity=0.119 Sum_probs=89.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|.++||+++.| ++++++|++|+||||+++.+..++++++|.+. .++.|+.+..... +..+++..++--.+.+
T Consensus 276 r~iL~~isf~i~~g---~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~-id~qdir~vtq~slR~aIg~VPQDtvLFND 351 (497)
T COG5265 276 RPILNGISFTIPLG---KTVAIVGESGAGKSTILRLLFRFYDVNSGSIT-IDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351 (497)
T ss_pred chhhcCccccccCc---cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE-EcchhHHHhHHHHHHHHhCcCcccceehhh
Confidence 57999999999999 99999999999999999999999999999976 5555655433322 2234444332211111
Q ss_pred hhhh-hccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHh--hhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 82 NLLR-FALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHID--SLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 82 ~Ll~-~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~--~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
.+.. .........+..+.-.....+...++..+- +-.+..+. -|+||||||||++|||++..+|+.+.+||.+|
T Consensus 352 ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP---~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deats 428 (497)
T COG5265 352 TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLP---EGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATS 428 (497)
T ss_pred hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCc---hhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhh
Confidence 1110 000111111111111111111112222220 01111111 14569999999999999999898888898766
No 464
>KOG0083|consensus
Probab=99.45 E-value=1.9e-14 Score=120.96 Aligned_cols=158 Identities=18% Similarity=0.343 Sum_probs=119.3
Q ss_pred EEcCCCCcHHHHHHHHh-CCCCC---CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchhh-
Q psy13975 24 LISDNSSGKTTLIAKLQ-GIDSP---EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTMV- 98 (415)
Q Consensus 24 IlG~nGsGKSTLl~~l~-Gl~~p---~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v- 98 (415)
++|++|.|||+|+-++- |-+-. -+..+++|...-+ ...+...++++|++.|++.|++. +..+|++...
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli--~~~~~kvklqiwdtagqerfrsv-----t~ayyrda~al 74 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLI--DMDDKKVKLQIWDTAGQERFRSV-----THAYYRDADAL 74 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeecccccee--ccCCcEEEEEEeeccchHHHhhh-----hHhhhccccee
Confidence 68999999999976653 32211 1223333332211 22345788999999999999988 7778888875
Q ss_pred HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccccc
Q psy13975 99 MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERN 178 (415)
Q Consensus 99 ~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~n 178 (415)
++++|+.+..+ ++..+.|...+.++...
T Consensus 75 lllydiankas-fdn~~~wlsei~ey~k~--------------------------------------------------- 102 (192)
T KOG0083|consen 75 LLLYDIANKAS-FDNCQAWLSEIHEYAKE--------------------------------------------------- 102 (192)
T ss_pred eeeeecccchh-HHHHHHHHHHHHHHHHh---------------------------------------------------
Confidence 67789988777 88999999888888753
Q ss_pred cCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCC
Q psy13975 179 LGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPF 252 (415)
Q Consensus 179 lgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f 252 (415)
.+.+++++||+|+. +++.+..++ ..+++..||..+.+||+|++-|+|+.|--|..++.....
T Consensus 103 -~v~l~llgnk~d~a----~er~v~~dd-------g~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 103 -AVALMLLGNKCDLA----HERAVKRDD-------GEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred -hHhHhhhccccccc----hhhccccch-------HHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhcc
Confidence 45567889999995 456666555 688999999999999999999999999998888775443
No 465
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.45 E-value=3.9e-13 Score=126.25 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=99.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CCCC-----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQ-GIDS-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~-Gl~~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
+|+|+|+.|+|||||++++. |.+. ++.+. ++....+.. ......+.+|++.|...+ + ....+.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~--~~~~~~i~~--~~~~~~l~i~Dt~G~~~~--~-----~~~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDD--DTYERTVSV--DGEESTLVVIDHWEQEMW--T-----EDSCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccc--cceEEEEEE--CCEEEEEEEEeCCCcchH--H-----HhHHhh
Confidence 68999999999999999995 4332 22221 111111111 113467889999987621 1 111222
Q ss_pred -chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 -HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 -~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
+.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 71 ~~ad~iilV~d~td~~S-~~~~~~~~~~l~~~~~---------------------------------------------- 103 (221)
T cd04148 71 YQGDAFVVVYSVTDRSS-FERASELRIQLRRNRQ---------------------------------------------- 103 (221)
T ss_pred cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC----------------------------------------------
Confidence 344 467789888766 5555556443322210
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
..++|+++|+||+|+... +.++.++ .+.++..+++.+++||++++.+++.+++.++..+..
T Consensus 104 -----~~~~piilV~NK~Dl~~~----~~v~~~~-------~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 104 -----LEDRPIILVGNKSDLARS----REVSVQE-------GRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred -----CCCCCEEEEEEChhcccc----ceecHHH-------HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 017899999999998532 2233222 456777789999999999999999999999887764
No 466
>KOG1673|consensus
Probab=99.45 E-value=1.6e-13 Score=118.37 Aligned_cols=182 Identities=19% Similarity=0.368 Sum_probs=130.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchhh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS-PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTMV 98 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~-p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v 98 (415)
-+++++|+...|||||+-.+.|-+. ......++.++.+..-.-+......++|++.|+..+.++++.++.. ...+
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d----svaI 96 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD----SVAI 96 (205)
T ss_pred EEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC----cEEE
Confidence 4789999999999999988876432 1111111123333222223345667899999999888886555421 2224
Q ss_pred HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccccc
Q psy13975 99 MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERN 178 (415)
Q Consensus 99 ~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~n 178 (415)
++++|++++.. +..+..|...++..-+ .
T Consensus 97 lFmFDLt~r~T-LnSi~~WY~QAr~~Nk---------------------------------------t------------ 124 (205)
T KOG1673|consen 97 LFMFDLTRRST-LNSIKEWYRQARGLNK---------------------------------------T------------ 124 (205)
T ss_pred EEEEecCchHH-HHHHHHHHHHHhccCC---------------------------------------c------------
Confidence 67789998876 7888888654433321 1
Q ss_pred cCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCCCCCcce
Q psy13975 179 LGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPFRTSALI 258 (415)
Q Consensus 179 lgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f~~~a~v 258 (415)
.+| ++||||+|.+-. +..|....|....|++|.-.+|+|||+|+....|++.+|+.++.++|..|.+.+.+.
T Consensus 125 -AiP-ilvGTKyD~fi~------lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~~ti~~~~ 196 (205)
T KOG1673|consen 125 -AIP-ILVGTKYDLFID------LPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNLPWTIPEIL 196 (205)
T ss_pred -cce-EEeccchHhhhc------CCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCCceeccccc
Confidence 233 578999999865 445667778888999999999999999999999999999999999999998776655
Q ss_pred eeCCeeE
Q psy13975 259 VEKDAVL 265 (415)
Q Consensus 259 ~d~d~i~ 265 (415)
.-.|||+
T Consensus 197 ~iGdPil 203 (205)
T KOG1673|consen 197 TIGDPIL 203 (205)
T ss_pred ccCcccc
Confidence 5556654
No 467
>KOG0059|consensus
Probab=99.45 E-value=1.3e-13 Score=153.11 Aligned_cols=169 Identities=15% Similarity=0.078 Sum_probs=113.0
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc--ccceEEEEEecCcccchh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE--DHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~--~~~~l~i~~l~g~~~~~~ 82 (415)
++++++|.|++| ++++++|+|||||||++++++|...|++|.++. .+.++...... ....+|+. |++..
T Consensus 580 Av~~ls~~V~~g---ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i-~g~~i~~~~~~~~~~~~iGyC-----PQ~d~ 650 (885)
T KOG0059|consen 580 AVRGLSFAVPPG---ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALI-KGHDITVSTDFQQVRKQLGYC-----PQFDA 650 (885)
T ss_pred hhcceEEEecCC---ceEEEecCCCCCchhhHHHHhCCccCCcceEEE-ecCccccccchhhhhhhcccC-----Cchhh
Confidence 789999999999 999999999999999999999999999999874 45555443232 33445555 33333
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCch--------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTPW--------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p~--------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
+.+.. +-++...+......-++ ..++.+++ ...+++.+..+ |+|+|+|+.+|.|+.-.|....+|
T Consensus 651 l~~~l----T~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L-~~~~~~~~~~y--SgG~kRkLs~aialig~p~vi~LD 723 (885)
T KOG0059|consen 651 LWEEL----TGREHLEFYARLRGLPRSDIGSAIEKLLRLVGL-GPYANKQVRTY--SGGNKRRLSFAIALIGDPSVILLD 723 (885)
T ss_pred hhhhc----cHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCC-hhhhccchhhC--CCcchhhHHHHHHHhcCCCEEEec
Confidence 31111 12222222211111121 12333333 24444445555 999999999999998555554445
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
| |..|+|+.-+..+.+.+++... .|-++++|||..
T Consensus 724 E------------------------------------------PstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsM 758 (885)
T KOG0059|consen 724 E------------------------------------------PSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSM 758 (885)
T ss_pred C------------------------------------------CCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCH
Confidence 4 4568888899999999999865 555999999765
No 468
>KOG0081|consensus
Probab=99.45 E-value=2e-14 Score=124.31 Aligned_cols=161 Identities=22% Similarity=0.336 Sum_probs=114.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CCCCCC--CcEEEEeceeecCC-------CCccccceEEEEEecCcccchhhhhhccCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQ-GIDSPE--KGLALEYAYINVSD-------EYREDHTRLGVWILDGEPAHSNLLRFALNQ 90 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~-Gl~~p~--~G~il~~~~~~v~~-------~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~ 90 (415)
+++.+|++|+|||++|-.++ |.+.+. +..+++|....+-. ..+..+..+.+|+++|++.|.+| +.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL-----TT 85 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL-----TT 85 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH-----HH
Confidence 56779999999999998876 333332 22222222222110 11234567889999999999999 55
Q ss_pred CCCCchhh-HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccC
Q psy13975 91 ETLPHTMV-MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVI 169 (415)
Q Consensus 91 ~~~~~~~v-~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lp 169 (415)
..+++.+. ++.+|++...+++ .+..|...++.+.-.
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFL-nvrnWlSQL~~hAYc------------------------------------------ 122 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFL-NVRNWLSQLQTHAYC------------------------------------------ 122 (219)
T ss_pred HHHHhhccceEEEeccchHHHH-HHHHHHHHHHHhhcc------------------------------------------
Confidence 56677764 5678988877744 456787776666521
Q ss_pred CCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 170 PGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 170 L~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
| ...|++++||+|+.+ .+.+++++ .+.+|.+||..+|+||+-++.|++...+.++.++..
T Consensus 123 --E-------~PDivlcGNK~DL~~----~R~Vs~~q-------a~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 123 --E-------NPDIVLCGNKADLED----QRVVSEDQ-------AAALADKYGLPYFETSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred --C-------CCCEEEEcCccchhh----hhhhhHHH-------HHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHH
Confidence 1 457999999999954 35566555 789999999999999999999998888888777764
No 469
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=8.2e-13 Score=123.17 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=100.6
Q ss_pred cEEEEEcCCCCcHHHHHH-HHhCCCCCC--CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIA-KLQGIDSPE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~-~l~Gl~~p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|++|||||||++ .+.|...+. .+....+....+. .......+.+|++.|...+..+ ...++...
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~i~~~Dt~g~~~~~~~-----~~~~~~~~ 82 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFY--TNCGPICFNVWDTAGQEKFGGL-----RDGYYIKG 82 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEE--ECCeEEEEEEEECCCchhhhhh-----hHHHhccC
Confidence 589999999999999995 566764331 2222222222211 1223467889999987766555 22233333
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|+++..+ +..+..|...+.+.. +
T Consensus 83 ~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~----------------------------------------------~--- 112 (215)
T PTZ00132 83 QCAIIMFDVTSRIT-YKNVPNWHRDIVRVC----------------------------------------------E--- 112 (215)
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHHHHhC----------------------------------------------C---
Confidence 3 467888887665 555566644333221 1
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.+|+++|+||+|+.+. ....+. ..++...+..++.+|++++.+++.+|..|+..++.
T Consensus 113 ----~~~i~lv~nK~Dl~~~-----~~~~~~--------~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 113 ----NIPIVLVGNKVDVKDR-----QVKARQ--------ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred ----CCCEEEEEECccCccc-----cCCHHH--------HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 5789999999998531 111111 23556678899999999999999999999888765
No 470
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.43 E-value=8e-13 Score=118.65 Aligned_cols=154 Identities=19% Similarity=0.139 Sum_probs=99.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-C-----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-S-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETL 93 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~ 93 (415)
-+++|+|+.|+|||||++++.+-. . |+.|.........+ ......+.+|++.|+..+..+ ...++
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~----~~~~~~l~~~d~~g~~~~~~~-----~~~~~ 75 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV----YGQEKYLILREVGEDEVAILL-----NDAEL 75 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE----CCeEEEEEEEecCCccccccc-----chhhh
Confidence 579999999999999999998632 2 33332111111111 123356788999887766544 44456
Q ss_pred Cchhh-HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 94 PHTMV-MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 94 ~~~~v-~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
.++.+ ++++|.+++.+ ++.+..|... +..
T Consensus 76 ~~~d~~llv~d~~~~~s-~~~~~~~~~~----~~~--------------------------------------------- 105 (169)
T cd01892 76 AACDVACLVYDSSDPKS-FSYCAEVYKK----YFM--------------------------------------------- 105 (169)
T ss_pred hcCCEEEEEEeCCCHHH-HHHHHHHHHH----hcc---------------------------------------------
Confidence 66664 67788887655 4444344221 100
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
..++|+++|+||+|+... .....++ ...++.++|. .++++|++++.+++.+++.++..++
T Consensus 106 -----~~~~p~iiv~NK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 106 -----LGEIPCLFVAAKADLDEQ----QQRYEVQ-------PDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred -----CCCCeEEEEEEccccccc----ccccccC-------HHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 016899999999998532 1111111 3566777887 4799999999999999999987765
No 471
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.42 E-value=3.9e-13 Score=120.46 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
+++|+|+.|+|||||++++.+.. .|+.|. .+...+ .....+.+|+++|...+..+. ...+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~--~~~~~~------~~~~~i~l~Dt~G~~~~~~~~-----~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGF--NVETVE------YKNLKFTIWDVGGKHKLRPLW-----KHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCce--eEEEEE------ECCEEEEEEECCCChhcchHH-----HHHhccC
Confidence 47899999999999999998642 223232 121111 124678999999987665542 2233444
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|. .+.+... .
T Consensus 68 d~ii~V~D~s~~~s-~~~~~~~~---~~~~~~~----------------------------------------~------ 97 (169)
T cd04158 68 QAVVFVVDSSHRDR-VSEAHSEL---AKLLTEK----------------------------------------E------ 97 (169)
T ss_pred CEEEEEEeCCcHHH-HHHHHHHH---HHHhcCh----------------------------------------h------
Confidence 4 467788887655 34444442 2222110 0
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHH--HHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIR--KFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR--~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.-++|++||+||+|+.. ..+.++ +.++++ .++......+++||+|++.+++.+|..|.+.+..-
T Consensus 98 --~~~~piilv~NK~Dl~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 98 --LRDALLLIFANKQDVAG------ALSVEE---MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred --hCCCCEEEEEeCcCccc------CCCHHH---HHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 01579999999999852 122233 222221 11111123678899999999999999999887653
No 472
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.42 E-value=3.3e-13 Score=121.22 Aligned_cols=152 Identities=19% Similarity=0.274 Sum_probs=92.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||+++|.+.. .|+.|. ....+.. ...++.+|+++|+..+..+. ...+.+
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~----~~~~~~~----~~~~l~l~D~~G~~~~~~~~-----~~~~~~ 81 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDIDTISPTLGF----QIKTLEY----EGYKLNIWDVGGQKTLRPYW-----RNYFES 81 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEE----CCEEEEEEECCCCHHHHHHH-----HHHhCC
Confidence 478999999999999999998642 223231 1111111 13578999999987665552 223444
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
+. +++++|.+++.+ +.....|. ...+...
T Consensus 82 ~d~~i~v~d~~~~~s-~~~~~~~~---~~~~~~~---------------------------------------------- 111 (173)
T cd04154 82 TDALIWVVDSSDRLR-LDDCKREL---KELLQEE---------------------------------------------- 111 (173)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH---HHHHhCh----------------------------------------------
Confidence 44 467788877655 33333332 2222100
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHH-HHHhCCeEEEeccCCcccHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKF-CLKFGAGLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l-~~~~Gasli~tS~k~~~n~~~l~~~l~h 245 (415)
...++|++||+||+|+... ...++ +.+.+... +...+..++.+|++++.+++.++++++.
T Consensus 112 --~~~~~p~iiv~nK~Dl~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 112 --RLAGATLLILANKQDLPGA------LSEEE---IREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred --hhcCCCEEEEEECcccccC------CCHHH---HHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 0017899999999999642 12222 22222110 1234568999999999999999998853
No 473
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.41 E-value=4.1e-13 Score=119.23 Aligned_cols=154 Identities=21% Similarity=0.306 Sum_probs=89.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcE---------EEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSPEKGL---------ALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQE 91 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~---------il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~ 91 (415)
+++|+|+.|||||||+++|.+...+..|. ...+..... ....+.+|+++|+..+..+.. .
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~-----~ 69 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV------GNARLKFWDLGGQESLRSLWD-----K 69 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE------CCEEEEEEECCCChhhHHHHH-----H
Confidence 47899999999999999998643321111 111111111 235788999999876655522 2
Q ss_pred CCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCC
Q psy13975 92 TLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIP 170 (415)
Q Consensus 92 ~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL 170 (415)
.+.... +++++|...+.. +.....| +.+.+... .
T Consensus 70 ~~~~~~~~v~vvd~~~~~~-~~~~~~~---~~~~~~~~-----------------------------------------~ 104 (167)
T cd04160 70 YYAECHAIIYVIDSTDRER-FEESKSA---LEKVLRNE-----------------------------------------A 104 (167)
T ss_pred HhCCCCEEEEEEECchHHH-HHHHHHH---HHHHHhCh-----------------------------------------h
Confidence 233333 356677665443 3333222 22222110 0
Q ss_pred CccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHH---HHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 171 GEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFC---LKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 171 ~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~---~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
..++|+++|+||+|+... ...+ .+.+.++... ...+..++.+|++++.+++.++++|..|
T Consensus 105 -------~~~~p~ilv~NK~D~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 105 -------LEGVPLLILANKQDLPDA------LSVE---EIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred -------hcCCCEEEEEEccccccC------CCHH---HHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence 017899999999998531 1111 1222222221 2245689999999999999999988653
No 474
>KOG0097|consensus
Probab=99.41 E-value=6.7e-13 Score=112.70 Aligned_cols=159 Identities=17% Similarity=0.264 Sum_probs=116.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC---CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI---DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl---~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+-|+|||+||..+... -+-....+++|...-+. ......++.+|+..|++.|+.. +..+++..
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriie--vsgqkiklqiwdtagqerfrav-----trsyyrga 84 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE--VSGQKIKLQIWDTAGQERFRAV-----TRSYYRGA 84 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEE--ecCcEEEEEEeecccHHHHHHH-----HHHHhccc
Confidence 36789999999999999998742 11112333444432221 1335678999999999999877 77778877
Q ss_pred hh-HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 MV-MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~v-~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
.. +.++|+++... ...+..|....+...
T Consensus 85 agalmvyditrrst-ynhlsswl~dar~lt-------------------------------------------------- 113 (215)
T KOG0097|consen 85 AGALMVYDITRRST-YNHLSSWLTDARNLT-------------------------------------------------- 113 (215)
T ss_pred cceeEEEEehhhhh-hhhHHHHHhhhhccC--------------------------------------------------
Confidence 64 66788887554 677777743221111
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
|-...|+++++|+|+ |..+++..|+ .+.|+.++|..++++|+|++.|++..|-.....+|.
T Consensus 114 --npnt~i~lignkadl----e~qrdv~yee-------ak~faeengl~fle~saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 114 --NPNTVIFLIGNKADL----ESQRDVTYEE-------AKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred --CCceEEEEecchhhh----hhcccCcHHH-------HHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHH
Confidence 116778999999999 4456777666 789999999999999999999999999998888885
No 475
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.41 E-value=6.1e-13 Score=121.13 Aligned_cols=164 Identities=16% Similarity=0.245 Sum_probs=95.6
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccc
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~ 80 (415)
+|+++++....+ +++|+|++|||||||+++|.+-. .|+.+... ....+ ....+.+|+++|...+
T Consensus 9 ~~~~~~~~~~~~----ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~------~~~~~~l~D~~G~~~~ 76 (190)
T cd00879 9 VLSSLGLYNKEA----KILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTI------GNIKFKTFDLGGHEQA 76 (190)
T ss_pred HHHHhhcccCCC----EEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEE------CCEEEEEEECCCCHHH
Confidence 577788887766 67999999999999999998632 12222100 01111 1246778999987766
Q ss_pred hhhhhhccCCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 81 SNLLRFALNQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
..+. ...+.... +++++|.+++.+ ++....| +.+.+...
T Consensus 77 ~~~~-----~~~~~~ad~iilV~D~~~~~s-~~~~~~~---~~~i~~~~------------------------------- 116 (190)
T cd00879 77 RRLW-----KDYFPEVDGIVFLVDAADPER-FQESKEE---LDSLLSDE------------------------------- 116 (190)
T ss_pred HHHH-----HHHhccCCEEEEEEECCcHHH-HHHHHHH---HHHHHcCc-------------------------------
Confidence 5442 12233333 355677776543 2222222 11111100
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHH------------HhCCeEEE
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCL------------KFGAGLFY 227 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~------------~~Gasli~ 227 (415)
...+.|++||+||+|+.. ..+.++ +.+.++..-. .....++.
T Consensus 117 -----------------~~~~~pvivv~NK~Dl~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 117 -----------------ELANVPFLILGNKIDLPG------AVSEEE---LRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred -----------------cccCCCEEEEEeCCCCCC------CcCHHH---HHHHhCcccccccccccccccCceeEEEEE
Confidence 001689999999999853 122222 3333321100 12246899
Q ss_pred eccCCcccHHHHHHHHHHH
Q psy13975 228 TSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 228 tS~k~~~n~~~l~~~l~h~ 246 (415)
||++++.+++.++++|...
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999998653
No 476
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.41 E-value=1e-12 Score=121.05 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|+|||||++++.+... ++.+. +...... .......+.+|++.|...|..+ ....+.+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~---~~~~~~~--~~~~~~~l~i~D~~G~~~~~~~-----~~~~~~~ 70 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE---MHRKEYE--VGGVSLTLDILDTSGSYSFPAM-----RKLSIQN 70 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh---heeEEEE--ECCEEEEEEEEECCCchhhhHH-----HHHHhhc
Confidence 479999999999999999975421 22111 1111110 0122357789999998777655 2233444
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 71 ad~vilv~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------ 101 (198)
T cd04147 71 SDAFALVYAVDDPES-FEEVERLREEILEVKE------------------------------------------------ 101 (198)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC------------------------------------------------
Confidence 44 467788887655 5555565433322221
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
..++|+++|+||.|+... ++.+..++ . .......++..++++|++++.+++.+++.++..+.
T Consensus 102 ---~~~~piilv~NK~Dl~~~---~~~v~~~~---~---~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 102 ---DKFVPIVVVGNKADSLEE---ERQVPAKD---A---LSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ---CCCCcEEEEEEccccccc---cccccHHH---H---HHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 017899999999998642 12222211 1 11222345778999999999999999999987654
No 477
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.40 E-value=2.7e-12 Score=114.50 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCC-cEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh-h
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSPEK-GLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM-V 98 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p~~-G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~-v 98 (415)
+++|+|+.|+|||||++++.+-..+.. .... ....+.........++.+|+++|...+..... ..+.... +
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-----~~~~~ad~~ 74 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLA-----AEIRKANVI 74 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHh-----hhcccCCEE
Confidence 689999999999999999874322111 1100 00011111112345788999998775544321 1233333 4
Q ss_pred HHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccccc
Q psy13975 99 MLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILER 177 (415)
Q Consensus 99 ~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~ 177 (415)
++++|..++.+ ++.+ ..|...+++..
T Consensus 75 ilv~d~~~~~s-~~~~~~~~~~~i~~~~---------------------------------------------------- 101 (166)
T cd01893 75 CLVYSVDRPST-LERIRTKWLPLIRRLG---------------------------------------------------- 101 (166)
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHhC----------------------------------------------------
Confidence 66788888766 5554 35644433221
Q ss_pred ccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC--CeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 178 NLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG--AGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 178 nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G--asli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+....+.. .+.+.+..++.+++ ..+++||++++.+++.+|..+...+.
T Consensus 102 -~~~pviiv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 102 -VKVPIILVGNKSDLRDGSSQA---------GLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred -CCCCEEEEEEchhcccccchh---------HHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhc
Confidence 068999999999996431110 01111222222232 37999999999999999998876543
No 478
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.40 E-value=1.5e-12 Score=124.38 Aligned_cols=161 Identities=16% Similarity=0.222 Sum_probs=100.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQ-GID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~-Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
+|+|+|+.|+|||||++++. |.+ .|+.+. +....+. .......+.+|++.|...|..+ ...++.+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d---~~~k~~~--i~~~~~~l~I~Dt~G~~~~~~~-----~~~~~~~ 71 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED---FHRKLYS--IRGEVYQLDILDTSGNHPFPAM-----RRLSILT 71 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH---hEEEEEE--ECCEEEEEEEEECCCChhhhHH-----HHHHhcc
Confidence 58999999999999999996 332 222221 1111111 1123467889999998777655 2223444
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|++++.+ ++.+..|.+.+.+.-..+ + ..
T Consensus 72 ad~iIlVfdv~~~~S-f~~i~~~~~~I~~~k~~~----~---------------------------------------~~ 107 (247)
T cd04143 72 GDVFILVFSLDNRES-FEEVCRLREQILETKSCL----K---------------------------------------NK 107 (247)
T ss_pred CCEEEEEEeCCCHHH-HHHHHHHHHHHHHhhccc----c---------------------------------------cc
Confidence 44 467889988766 666666655443321100 0 00
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHH-HhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCL-KFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~-~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
...+..+|+++|+||+|+... +.+..++ +.+++. ..+..++.+|++++.+++.+++.|+..
T Consensus 108 ~~~~~~~piIivgNK~Dl~~~----~~v~~~e-------i~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~ 169 (247)
T cd04143 108 TKENVKIPMVICGNKADRDFP----REVQRDE-------VEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSL 169 (247)
T ss_pred cccCCCCcEEEEEECccchhc----cccCHHH-------HHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 001127899999999999641 2333333 333332 246789999999999999999999754
No 479
>KOG0064|consensus
Probab=99.39 E-value=2.7e-12 Score=129.96 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=88.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccch-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS- 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~- 81 (415)
..++..++|+|++| -+++|+||||||||+|.|+|.|+.+...|.. +... .. .++++++-|++.
T Consensus 495 ~vvv~~Ltf~i~~G---~hLLItGPNGCGKSSLfRILggLWPvy~g~L----~~P~-------~~--~mFYIPQRPYms~ 558 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPG---MHLLITGPNGCGKSSLFRILGGLWPVYNGLL----SIPR-------PN--NIFYIPQRPYMSG 558 (728)
T ss_pred ceeecceeEEecCC---ceEEEECCCCccHHHHHHHHhccCcccCCee----ecCC-------Cc--ceEeccCCCccCc
Confidence 34678899999999 9999999999999999999999998876662 1111 11 156666666543
Q ss_pred -hhhhhccCCC--------CCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 82 -NLLRFALNQE--------TLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 82 -~Ll~~~l~~~--------~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
.|..-.+-|. .+.+....-.+++-..+.++..-..| +.+..+-+.| |||+|||+.+||.+..||....
T Consensus 559 gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~-da~~dWkd~L--sgGekQR~~mARm~yHrPkyal 635 (728)
T KOG0064|consen 559 GTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGW-DAVRDWKDVL--SGGEKQRMGMARMFYHRPKYAL 635 (728)
T ss_pred CcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccCh-hhhccHHhhc--cchHHHHHHHHHHHhcCcchhh
Confidence 1211111111 22332222222222222223333335 5556666667 9999999999999999999988
Q ss_pred chhhhh
Q psy13975 153 LIELLS 158 (415)
Q Consensus 153 lde~~s 158 (415)
+||-++
T Consensus 636 LDEcTs 641 (728)
T KOG0064|consen 636 LDECTS 641 (728)
T ss_pred hhhhhc
Confidence 888654
No 480
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.39 E-value=1.8e-12 Score=123.99 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=59.1
Q ss_pred HHHHhhhcCChhhHHHHHHHHHhh----cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhh
Q psy13975 122 QDHIDSLNIGAHDYQAGRCCKLLT----FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLE 197 (415)
Q Consensus 122 ~~~~~~L~lSgGekQRl~LArAl~----~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE 197 (415)
+..+..| |+||+||++|||++. ..+..+++||
T Consensus 161 ~~~~~~l--S~G~~qr~~la~al~~~~~~~~~illlDE------------------------------------------ 196 (251)
T cd03273 161 KESLTEL--SGGQRSLVALSLILALLLFKPAPMYILDE------------------------------------------ 196 (251)
T ss_pred ccccccc--CHHHHHHHHHHHHHHHhhccCCCEEEEeC------------------------------------------
Confidence 3445555 999999999999996 2334444555
Q ss_pred hcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCCCCC
Q psy13975 198 KDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPFRTS 255 (415)
Q Consensus 198 ~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f~~~ 255 (415)
++.+++.+..+.+.+.|++++ .|++++++||+ ..+.+. .+++++..|.++
T Consensus 197 Pt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~-----~~~~~~-~d~v~~~~~~~~ 246 (251)
T cd03273 197 VDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLK-----EGMFNN-ANVLFRTRFVDG 246 (251)
T ss_pred CCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECC-----HHHHHh-CCEEEEEEeeCC
Confidence 445777788889999999885 38899999988 223343 688888777543
No 481
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.39 E-value=1.7e-12 Score=116.96 Aligned_cols=159 Identities=19% Similarity=0.220 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
.+++|+|+.|+|||||++.+.+.. .|+.+... ...... ......+.+|+++|...+..+ ....+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~----~~~~~~~~l~D~~g~~~~~~~-----~~~~~~ 71 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRY----KGQDYHLEIVDTAGQDEYSIL-----PQKYSI 71 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEE----CCEEEEEEEEECCChHhhHHH-----HHHHHh
Confidence 589999999999999999998532 22222111 011111 112346788999887665444 111222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.++..+ ++.+..|...+.+...
T Consensus 72 ~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~----------------------------------------------- 103 (180)
T cd04137 72 GIHGYILVYSVTSRKS-FEVVKVIYDKILDMLG----------------------------------------------- 103 (180)
T ss_pred hCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 222 356677776544 4444443222111110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
..++|+++|+||+|+.. .+.+..++ ++.++..++..++.+|++++.+++.++..+...+...+
T Consensus 104 ----~~~~p~ilv~NK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 104 ----KESVPIVLVGNKSDLHT----QRQVSTEE-------GKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred ----CCCCCEEEEEEchhhhh----cCccCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 11789999999999853 12233222 45666777889999999999999999999988777554
No 482
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.38 E-value=8.6e-13 Score=116.32 Aligned_cols=151 Identities=23% Similarity=0.330 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
.++|+|+.|+|||||+++|.+-.. |+.|. ....+. ......+.+|+++|...+..+.. ..+.+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~----~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~-----~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGF----NVEMLQ---LEKHLSLTVWDVGGQEKMRTVWK-----CYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCc----ceEEEE---eCCceEEEEEECCCCHhHHHHHH-----HHhccC
Confidence 478999999999999999986422 22221 211111 11236789999999776554421 123333
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ +.....|. .+.+...
T Consensus 69 ~~iv~v~D~~~~~~-~~~~~~~~---~~~~~~~----------------------------------------------- 97 (160)
T cd04156 69 DGLVYVVDSSDEAR-LDESQKEL---KHILKNE----------------------------------------------- 97 (160)
T ss_pred CEEEEEEECCcHHH-HHHHHHHH---HHHHhch-----------------------------------------------
Confidence 3 466778777654 33333332 2222100
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHH--HHHHHHHhCCeEEEeccCCcccHHHHHHHHH
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQY--IRKFCLKFGAGLFYTSAKEDKNCDLLYKYLA 244 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~--LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~ 244 (415)
...++|+++|+||+|+... ...++ +... +..+|...+..++.||++++.+++.+++.|.
T Consensus 98 -~~~~~piilv~nK~Dl~~~------~~~~~---i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 98 -HIKGVPVVLLANKQDLPGA------LTAEE---ITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred -hhcCCCEEEEEECcccccC------cCHHH---HHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 0017899999999998531 11111 2221 1344444456788999999999999999885
No 483
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.38 E-value=1.2e-12 Score=125.74 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHH
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKL 39 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l 39 (415)
..|+||+++|+.| ..++|.|.+|||||||++.+
T Consensus 9 ~nl~~v~~~ip~g---~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 9 NNLKNIDVDIPLG---VLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hcCCCceeeccCC---cEEEEECCCCCchHHHHHHH
Confidence 4699999999999 99999999999999999865
No 484
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.38 E-value=2.8e-12 Score=119.07 Aligned_cols=158 Identities=14% Similarity=0.032 Sum_probs=96.5
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHh----CCCCCCCcEEEEeceeecCCCCccccceEEEEEecC-cccc
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQ----GIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDG-EPAH 80 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~----Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g-~~~~ 80 (415)
.+..++++.+| +++|+|+||+|||||+..|. |...+..|.+. .....+.. ......+.+.+... ...|
T Consensus 13 ~~~~~l~~~~g----~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~-~~~~~i~~--~~~~~~v~~~f~~~~~~~~ 85 (204)
T cd03240 13 HERSEIEFFSP----LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA-HDPKLIRE--GEVRAQVKLAFENANGKKY 85 (204)
T ss_pred cCceEEecCCC----eEEEECCCCCCHHHHHHHHHHHHcCCCCccccccc-chHHHHhC--CCCcEEEEEEEEeCCCCEE
Confidence 34467788888 99999999999999999984 88777666432 11100111 12334455544432 1111
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHH------HHHHHHhhcccccccch
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQA------GRCCKLLTFARLRAHLI 154 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQR------l~LArAl~~~~~~~~ld 154 (415)
.- .+...++..+.+.. . ..+ ...+++.+..| |+||+|| +++||++..++..+++|
T Consensus 86 ~v----------~r~~~~~~~~~~~~-~---~~~---~~~~~~~~~~L--S~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 86 TI----------TRSLAILENVIFCH-Q---GES---NWPLLDMRGRC--SGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred EE----------EEEhhHhhceeeec-h---HHH---HHHHhcCcccc--CccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 00 01111111111111 0 111 12345666666 9999996 67888888767666666
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHH-HHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFD-FVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d-~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|| ..+++.+..+ .+.+.+++++.+.|.+++++||.
T Consensus 147 EP------------------------------------------~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 147 EP------------------------------------------TTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred CC------------------------------------------ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 65 3567777888 89999999876668899999975
No 485
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.37 E-value=1.7e-12 Score=118.10 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++++|+.|||||||++++.+.. .|+.|.. +....+.. .......+.+|+++|...+..+. ...+.+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~l~l~Dt~G~~~~~~~~-----~~~~~~ 75 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFN--TEKIKVSL-GNSKGITFHFWDVGGQEKLRPLW-----KSYTRC 75 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccc--eeEEEeec-cCCCceEEEEEECCCcHhHHHHH-----HHHhcc
Confidence 478999999999999999997532 2333321 11112211 11234678999999987665552 223444
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
+. +++++|.+++.+ ++.+..|...+.+...
T Consensus 76 ~d~ii~v~D~~~~~~-~~~~~~~~~~i~~~~~------------------------------------------------ 106 (183)
T cd04152 76 TDGIVFVVDSVDVER-MEEAKTELHKITRFSE------------------------------------------------ 106 (183)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHhhhh------------------------------------------------
Confidence 44 466778777544 3444444322222211
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
..+.|++||+||+|+... ...++...+.. +..++...+..++.+||+++.+++.+++.|...+.
T Consensus 107 ---~~~~p~iiv~NK~D~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 107 ---NQGVPVLVLANKQDLPNA------LSVSEVEKLLA-LHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ---cCCCcEEEEEECcCcccc------CCHHHHHHHhC-ccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 117899999999998531 22222111111 01121112346889999999999999999987765
No 486
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.37 E-value=3.6e-13 Score=119.17 Aligned_cols=173 Identities=14% Similarity=0.156 Sum_probs=100.0
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceE-EEEEecCcccchhhh
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRL-GVWILDGEPAHSNLL 84 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l-~i~~l~g~~~~~~Ll 84 (415)
|-.+|.++..| +++-+|||||||||||+.+++|+. |-+|++. +.+.++........+|- .|..+.+.+
T Consensus 15 L~plS~qv~aG---e~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~-~~G~~l~~~~~~eLArhRAYLsQqq~p------ 83 (248)
T COG4138 15 LGPLSGEVRAG---EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQ-FAGQPLEAWSATELARHRAYLSQQQTP------ 83 (248)
T ss_pred ccccccccccc---eEEEEECCCCccHHHHHHHHhCCC-CCCceEE-ECCcchhHHhHhHHHHHHHHHhhccCC------
Confidence 55678899999 999999999999999999999996 4578865 67666544322221111 111111111
Q ss_pred hhccCCCCCCchhhHHHHhcCCchh--------HHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 85 RFALNQETLPHTMVMLVVSMTTPWN--------IIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d~~~p~~--------~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
...+-|...+.+..|.+ +.+.+.. .+.+.+.+.+| ||||-|||.+|-.+.|--+..+.
T Consensus 84 --------~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-~DKL~Rs~~qL--SGGEWQRVRLAav~LQv~Pd~NP--- 149 (248)
T COG4138 84 --------PFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-DDKLGRSTNQL--SGGEWQRVRLAAVVLQITPDANP--- 149 (248)
T ss_pred --------cchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-cchhhhhhhhc--CcccceeeEEeEEEEEecCCCCc---
Confidence 11122333333444431 1122222 34555666666 99999999987665431111000
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccH
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNC 236 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~ 236 (415)
...+|.+ +||..++|-.+...+.+.|..+|. .|.++|+.|+--++.+
T Consensus 150 -------~~~LLll-------------------------DEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLNhTL 196 (248)
T COG4138 150 -------AGQLLLL-------------------------DEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLNHTL 196 (248)
T ss_pred -------cceeEEe-------------------------cCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchhhHH
Confidence 0011111 134455555666667777888886 4888888887555443
No 487
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.37 E-value=2.2e-12 Score=122.54 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=56.5
Q ss_pred HHHHhhhcCChhhHHHHHHHHHhhc----ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhh
Q psy13975 122 QDHIDSLNIGAHDYQAGRCCKLLTF----ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLE 197 (415)
Q Consensus 122 ~~~~~~L~lSgGekQRl~LArAl~~----~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE 197 (415)
++....| |+||+||++|||++.. .+..+++||
T Consensus 153 ~~~~~~l--S~G~~~r~~la~~l~~~~~~~~~illlDE------------------------------------------ 188 (243)
T cd03272 153 QQEMQQL--SGGQKSLVALALIFAIQKCDPAPFYLFDE------------------------------------------ 188 (243)
T ss_pred ccccccc--CHHHHHHHHHHHHHHHhccCCCCEEEEEC------------------------------------------
Confidence 3455555 9999999999999962 234444455
Q ss_pred hcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCCCCCcc
Q psy13975 198 KDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPFRTSAL 257 (415)
Q Consensus 198 ~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f~~~a~ 257 (415)
++.+++.+....+.+.|++++. +..++.+++.. + +. .+.++++.+.|.+++.
T Consensus 189 p~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~----~-~~-~~~d~i~~l~~~~~~~ 240 (243)
T cd03272 189 IDAALDAQYRTAVANMIKELSD--GAQFITTTFRP----E-LL-EVADKFYGVKFRNKVS 240 (243)
T ss_pred CccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH----H-HH-hhCCEEEEEEEECCEE
Confidence 4457777888888888888753 77888887542 2 22 3556666666655443
No 488
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.36 E-value=1.9e-12 Score=116.09 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=91.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||++++..- ..|+.|. .+.... .....+.+|+++|...+..+ ....+.+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~--~~~~~~------~~~~~~~l~Dt~G~~~~~~~-----~~~~~~~ 76 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGF--NVETVT------YKNVKFNVWDVGGQDKIRPL-----WRHYYTG 76 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCccccCCccc--ceEEEE------ECCEEEEEEECCCCHHHHHH-----HHHHhcc
Confidence 58999999999999999999642 1233332 111111 13467899999998877666 2334455
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..| +.+.+..- .
T Consensus 77 a~~ii~v~D~t~~~s-~~~~~~~---~~~~~~~~--------------------------------------~------- 107 (168)
T cd04149 77 TQGLIFVVDSADRDR-IDEARQE---LHRIINDR--------------------------------------E------- 107 (168)
T ss_pred CCEEEEEEeCCchhh-HHHHHHH---HHHHhcCH--------------------------------------h-------
Confidence 55 467889887655 3333222 22222110 0
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHH--HHhCCeEEEeccCCcccHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFC--LKFGAGLFYTSAKEDKNCDLLYKYLA 244 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~--~~~Gasli~tS~k~~~n~~~l~~~l~ 244 (415)
.-++|+++|+||+|+... ...++ +.+.++ +. ...+..+++||||++.+++.++..|.
T Consensus 108 ---~~~~piilv~NK~Dl~~~------~~~~~---i~~~~~-~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 108 ---MRDALLLVFANKQDLPDA------MKPHE---IQEKLG-LTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred ---hcCCcEEEEEECcCCccC------CCHHH---HHHHcC-CCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 016899999999998531 22222 222111 10 11234688999999999999999885
No 489
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.36 E-value=1.5e-12 Score=121.60 Aligned_cols=173 Identities=10% Similarity=-0.019 Sum_probs=90.2
Q ss_pred eeEeEEEc-CCCcccEEEEEcCCCCcHHHHHHHHhC-CCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 7 DVFVLRFN-DGSVIGNILLISDNSSGKTTLIAKLQG-IDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 7 ~~vs~~i~-~G~~~e~v~IlG~nGsGKSTLl~~l~G-l~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
.+++|... +| ++++|+|+||||||||++.|++ ++.+..+........+.. ........+.+.+......+...
T Consensus 18 ~~i~~~~~~~~---~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~v~~~f~~~~~~~~~~- 92 (213)
T cd03279 18 QVIDFTGLDNN---GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVF-APGEDTAEVSFTFQLGGKKYRVE- 92 (213)
T ss_pred eEEeCCCCCcc---CEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHh-cCCCccEEEEEEEEECCeEEEEE-
Confidence 34555543 36 8999999999999999999985 433333322200000000 11122344555544433322111
Q ss_pred hhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccC
Q psy13975 85 RFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYS 164 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~ 164 (415)
. +........... -.+...+. ...+++.+..| |+||+||+++|||+..++.....++. +
T Consensus 93 ----r---~~gl~~~~~~~~----~~l~~g~l-~~~l~~~~~~l--S~G~~~r~~la~al~~~p~~~~~~~~-------~ 151 (213)
T cd03279 93 ----R---SRGLDYDQFTRI----VLLPQGEF-DRFLARPVSTL--SGGETFLASLSLALALSEVLQNRGGA-------R 151 (213)
T ss_pred ----E---ecCCCHHHHHHh----hhhhhcch-HHHhcCCcccc--CHHHHHHHHHHHHHHhHHHhhhccCC-------C
Confidence 0 001000000000 00111111 23445556556 99999999999999743210000000 0
Q ss_pred ccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 165 SVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 165 ~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+ |++-.+|+..+++.+..+.+.+.+++++.+ |.+++++||.
T Consensus 152 ~-------------------------~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~ 192 (213)
T cd03279 152 L-------------------------EALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHV 192 (213)
T ss_pred C-------------------------CEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECc
Confidence 0 111112456788888888899999988644 8899999964
No 490
>KOG0927|consensus
Probab=99.36 E-value=2e-12 Score=131.42 Aligned_cols=151 Identities=17% Similarity=0.078 Sum_probs=82.3
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCc-cc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGE-PA 79 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~-~~ 79 (415)
+.++++|+.|++..| ++++|+|+|||||||+|++|.|-+.|.+-.+-.|. ..-.-...+ ......+...+.. ..
T Consensus 87 g~~l~kd~~~El~~g---~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~-ls~e~~ps~~~av~~v~~~~~~e~~r 162 (614)
T KOG0927|consen 87 GVELIKDVTLELNRG---RRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYL-LSREIEPSEKQAVQAVVMETDHERKR 162 (614)
T ss_pred CceeeeeeeEEecCC---ceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhh-hcccCCCchHHHHHHHhhhhHHHHHH
Confidence 346899999999999 99999999999999999999998888665522121 111111111 1111111111110 01
Q ss_pred chhhhh-hccCCCCCC-c--hhhHHHHhcCCch-------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccc
Q psy13975 80 HSNLLR-FALNQETLP-H--TMVMLVVSMTTPW-------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 80 ~~~Ll~-~~l~~~~~~-~--~~v~~~~d~~~p~-------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
+..+.. +........ + ..++...+-.++. .++..+..-.+...+.+..| |+|+++|++|||+|.++|
T Consensus 163 le~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~--SgGwrmR~aLAr~Lf~kP 240 (614)
T KOG0927|consen 163 LEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL--SGGWRMRAALARALFQKP 240 (614)
T ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc--CchHHHHHHHHHHHhcCC
Confidence 111111 111100000 0 0011111111111 12222222123334455545 999999999999999999
Q ss_pred ccccchhhhh
Q psy13975 149 LRAHLIELLS 158 (415)
Q Consensus 149 ~~~~lde~~s 158 (415)
..+++|||++
T Consensus 241 ~LLLLDEPtn 250 (614)
T KOG0927|consen 241 DLLLLDEPTN 250 (614)
T ss_pred CEEEecCCcc
Confidence 9999999865
No 491
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.34 E-value=6e-12 Score=129.17 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=122.7
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
.++|+||++.+| |+++|-|--|||+|-|++.|.|..++..|++. +++..+......+..+.++.+++++-....++
T Consensus 274 ~~~dvSf~vr~G---EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~-l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~ 349 (500)
T COG1129 274 KVRDVSFTVRAG---EILGIAGLVGAGRTELARALFGARPASSGEIL-LDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLV 349 (500)
T ss_pred ceeCceeEEeCC---cEEEEeccccCCHHHHHHHHhCCCcCCCceEE-ECCEEccCCCHHHHHHcCCEeCCcccccCcCc
Confidence 478999999999 99999999999999999999999999999976 77776665555556677888887765443331
Q ss_pred hhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhc------------CChhhHHHHHHHHHhhccccccc
Q psy13975 85 RFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLN------------IGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~------------lSgGekQRl~LArAl~~~~~~~~ 152 (415)
....+.....+-.++-...+.+++.-.. ...++++...|+ ||||.|||+.|||.+...+..++
T Consensus 350 ----l~~sI~~Ni~l~~l~~~~~~~~i~~~~e-~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLi 424 (500)
T COG1129 350 ----LDMSIAENITLASLRRFSRRGLIDRRKE-RALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLI 424 (500)
T ss_pred ----CCCcHHHheehHhhhhhccccccChHHH-HHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEE
Confidence 0011111000001110000101222111 123333333333 39999999999999997776666
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+||| ++|+|---+.-|++.+|++|.+ |.+++++|
T Consensus 425 lDEP------------------------------------------TRGIDVGAK~eIy~li~~lA~~-G~ail~iS--- 458 (500)
T COG1129 425 LDEP------------------------------------------TRGIDVGAKAEIYRLIRELAAE-GKAILMIS--- 458 (500)
T ss_pred ECCC------------------------------------------CcCcccchHHHHHHHHHHHHHC-CCEEEEEe---
Confidence 6664 4566666666777889999975 99999988
Q ss_pred cccHHHHHHHHHHHHhC
Q psy13975 233 DKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 233 ~~n~~~l~~~l~h~l~~ 249 (415)
..+.++.. +.+|++-
T Consensus 459 -SElpEll~-~~DRIlV 473 (500)
T COG1129 459 -SELPELLG-LSDRILV 473 (500)
T ss_pred -CChHHHHh-hCCEEEE
Confidence 44545444 3355553
No 492
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.33 E-value=1.5e-11 Score=113.95 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCC-CccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDE-YREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~-~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
+++|+|++|+|||||++++.+-. .|+-|..+.......... ..+....+.+|++.|+..|..+ .+.+++
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l-----~~~~yr 76 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST-----RAVFYN 76 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHH-----HHHHhC
Confidence 58999999999999999998532 233332111111111111 1224567899999999888777 444566
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|++++.+ ++.+..|...+.+....- . ......+ ...+.
T Consensus 77 ~ad~iIlVyDvtn~~S-f~~l~~W~~ei~~~~~~~---~----------------~~~~~~~-------------~~~~~ 123 (202)
T cd04102 77 QVNGIILVHDLTNRKS-SQNLQRWSLEALNKDTFP---T----------------GLLVTNG-------------DYDSE 123 (202)
T ss_pred cCCEEEEEEECcChHH-HHHHHHHHHHHHHhhccc---c----------------ccccccc-------------ccccc
Confidence 666 478899999877 788888976665443210 0 0000000 00000
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcc
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDK 234 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~ 234 (415)
....-.+|++|||||+|+.+. +..+. .....-...+|.+.|+.-++.+++++.
T Consensus 124 -~~~~~~~PiilVGnK~Dl~~~----r~~~~---~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 124 -QFGGNQIPLLVIGTKLDQIPE----KESSG---NLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred -ccCCCCceEEEEEECccchhh----cccch---HHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 000127899999999999642 22222 222233457899999988888887554
No 493
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.33 E-value=1.3e-12 Score=116.62 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=94.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 22 ILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 22 v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
++|+|+.|+|||||++++.+.. .|+.|. ....+ ......+.+|+++|+..|..+ ...++.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~----~~~~i----~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~a 68 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF----NSVAI----PTQDAIMELLEIGGSQNLRKY-----WKRYLSGS 68 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCc----ceEEE----eeCCeEEEEEECCCCcchhHH-----HHHHHhhC
Confidence 7899999999999999998542 233332 11111 123467899999998877665 23344555
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ +.....| +.+.... ..
T Consensus 69 d~ii~V~D~t~~~s-~~~~~~~---l~~~~~~-------------------------------------------~~--- 98 (164)
T cd04162 69 QGLIFVVDSADSER-LPLARQE---LHQLLQH-------------------------------------------PP--- 98 (164)
T ss_pred CEEEEEEECCCHHH-HHHHHHH---HHHHHhC-------------------------------------------CC---
Confidence 5 357788877654 3333333 2222110 01
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHH--HHHHHHHhCCeEEEeccCC------cccHHHHHHHHHH
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQY--IRKFCLKFGAGLFYTSAKE------DKNCDLLYKYLAH 245 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~--LR~l~~~~Gasli~tS~k~------~~n~~~l~~~l~h 245 (415)
++|+++|+||.|+... + . ...|.+. +..++.+.+..++.||+++ +.+++.+|..++.
T Consensus 99 ----~~piilv~NK~Dl~~~----~--~---~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 99 ----DLPLVVLANKQDLPAA----R--S---VQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ----CCcEEEEEeCcCCcCC----C--C---HHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 7899999999998532 1 1 1112211 4567777888899999998 7888888887753
No 494
>KOG0393|consensus
Probab=99.32 E-value=1.2e-12 Score=119.18 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=121.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC-ccccceEEEEEecCcccchhhhhhccCCCCCCchhh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY-REDHTRLGVWILDGEPAHSNLLRFALNQETLPHTMV 98 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~-~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v 98 (415)
.+++|||+.++|||.||-.++.-.-|..-.-..|+.....-.. .+....+++|+++|++.|..| .+..|+++.+
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrl-----RplsY~~tdv 79 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRL-----RPLSYPQTDV 79 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccc-----cccCCCCCCE
Confidence 6889999999999999988864333332222223332222122 245678999999999999887 5557777775
Q ss_pred -HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccccc
Q psy13975 99 -MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILER 177 (415)
Q Consensus 99 -~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~ 177 (415)
++++++.+|.++.+-...|...+..+. |
T Consensus 80 fl~cfsv~~p~S~~nv~~kW~pEi~~~c-------------------------------------------p-------- 108 (198)
T KOG0393|consen 80 FLLCFSVVSPESFENVKSKWIPEIKHHC-------------------------------------------P-------- 108 (198)
T ss_pred EEEEEEcCChhhHHHHHhhhhHHHHhhC-------------------------------------------C--------
Confidence 566899999986666688876666554 2
Q ss_pred ccCCcEEEEEeCcchhhhhhhcccCChhhH-HHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 178 NLGVDIVVVVTKTDYMSTLEKDFYYKEEHF-DFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 178 nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~-d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
++|+++||+|.||.....-...+..... -...+..+.+|.+.|| .++++|+++..+++.+|+..+...+.-+
T Consensus 109 --~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 109 --NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred --CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence 8999999999999853211001110001 1223448899999996 6999999999999999999988887644
No 495
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.32 E-value=5.1e-12 Score=111.35 Aligned_cols=152 Identities=18% Similarity=0.263 Sum_probs=89.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC------CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQGID------SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~------~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
.++|+|+.|||||||+++|.+.. .|+.|. ..... .....++.+|+++|...+..+.. .++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~----~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~-----~~~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGF----NVESF----EKGNLSFTAFDMSGQGKYRGLWE-----HYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCcccc----ceEEE----EECCEEEEEEECCCCHhhHHHHH-----HHHc
Confidence 47899999999999999998642 223332 11111 11346788999999887766632 2344
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+.+.+ +.....|...+.+.. .+
T Consensus 68 ~~d~ii~v~D~~~~~~-~~~~~~~~~~~~~~~-~~--------------------------------------------- 100 (162)
T cd04157 68 NIQGIIFVIDSSDRLR-LVVVKDELELLLNHP-DI--------------------------------------------- 100 (162)
T ss_pred cCCEEEEEEeCCcHHH-HHHHHHHHHHHHcCc-cc---------------------------------------------
Confidence 444 456778776544 333333322211100 00
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHH--HHhCCeEEEeccCCcccHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFC--LKFGAGLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~--~~~Gasli~tS~k~~~n~~~l~~~l~h 245 (415)
...++|+++|+||+|+.... ..++ +.+.+. ++ ......++.||++++.+++.++++|.+
T Consensus 101 ---~~~~~p~iiv~NK~Dl~~~~------~~~~---~~~~l~-~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 101 ---KHRRVPILFFANKMDLPDAL------TAVK---ITQLLG-LENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred ---ccCCCCEEEEEeCccccCCC------CHHH---HHHHhC-CccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 01279999999999986321 1111 111111 11 112335788999999999999999864
No 496
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.31 E-value=1e-11 Score=110.92 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|++|||||||+++|.|. ..|+.|. ....+.. ....+.+|++.|...+.... ...+..
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~----~~~~i~~----~~~~~~~~D~~G~~~~~~~~-----~~~~~~ 81 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQGF----NIKTVQS----DGFKLNVWDIGGQRAIRPYW-----RNYFEN 81 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCc----ceEEEEE----CCEEEEEEECCCCHHHHHHH-----HHHhcC
Confidence 68999999999999999999986 3455552 1111111 12467889988876554432 112333
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+.+.. +.....|. ...+...
T Consensus 82 ~~~ii~v~D~~~~~~-~~~~~~~~---~~~~~~~---------------------------------------------- 111 (173)
T cd04155 82 TDCLIYVIDSADKKR-LEEAGAEL---VELLEEE---------------------------------------------- 111 (173)
T ss_pred CCEEEEEEeCCCHHH-HHHHHHHH---HHHHhCh----------------------------------------------
Confidence 33 456677776543 23322221 1111100
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-CeEEEeccCCcccHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-AGLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-asli~tS~k~~~n~~~l~~~l~h 245 (415)
...++|+++|+||+|+... +..+.+.+.+........ ..++.+|++++.+++.++++|.+
T Consensus 112 --~~~~~p~ivv~nK~D~~~~---------~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 112 --KLAGVPVLVFANKQDLATA---------APAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred --hhcCCCEEEEEECCCCccC---------CCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 0017899999999998532 111112111111000011 13678999999999999999864
No 497
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.31 E-value=4.7e-12 Score=111.49 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=90.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh-
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSP--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM- 97 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~- 97 (415)
+++|+|..|||||||++++.+.... ..+....+....+ ....+.+|+++|...+..+. ...+....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~-----~~~~~~~~~ 69 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEY------KNVSFTVWDVGGQDKIRPLW-----KHYYENTNG 69 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEE------CCEEEEEEECCCChhhHHHH-----HHHhccCCE
Confidence 4799999999999999999875321 1111111111111 13578899999988766552 22233334
Q ss_pred hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccccc
Q psy13975 98 VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILER 177 (415)
Q Consensus 98 v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~ 177 (415)
+++++|.+.+.+ +.....|.. ...... .
T Consensus 70 ~i~v~D~~~~~~-~~~~~~~~~---~~~~~~----------------------------------------~-------- 97 (158)
T cd00878 70 IIFVVDSSDRER-IEEAKEELH---KLLNEE----------------------------------------E-------- 97 (158)
T ss_pred EEEEEECCCHHH-HHHHHHHHH---HHHhCc----------------------------------------c--------
Confidence 456788887654 333333221 111110 0
Q ss_pred ccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHH-HHHhCCeEEEeccCCcccHHHHHHHHHH
Q psy13975 178 NLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKF-CLKFGAGLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 178 nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l-~~~~Gasli~tS~k~~~n~~~l~~~l~h 245 (415)
..+.|+++|+||+|+.... ..+.+.+.++.. +......++.+|++++.+++.++++|..
T Consensus 98 ~~~~piiiv~nK~D~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 98 LKGVPLLIFANKQDLPGAL---------SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred cCCCcEEEEeeccCCcccc---------CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 0178999999999986421 112222222222 2223457999999999999999998853
No 498
>KOG2355|consensus
Probab=99.31 E-value=1.1e-11 Score=112.42 Aligned_cols=45 Identities=33% Similarity=0.494 Sum_probs=39.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+++-|+|++++.| ...+++|.|||||||||++|.|..-...|.+.
T Consensus 28 P~~~Dfnldlp~g---sRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~ 72 (291)
T KOG2355|consen 28 PIFFDFNLDLPAG---SRCLLVGANGAGKTTLLKILSGKHMVGGGVVQ 72 (291)
T ss_pred ceEEEEeeccCCC---ceEEEEecCCCchhhhHHHhcCcccccCCeEE
Confidence 7899999999999 99999999999999999999997655556654
No 499
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.31 E-value=6.2e-12 Score=113.28 Aligned_cols=153 Identities=15% Similarity=0.153 Sum_probs=91.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-CC---CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-ID---SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l~---~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
.+++++|+.|+|||||++++.+ .. .|+.|. .+.... -....+.+|+++|...+..+. ...+.+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~--~~~~~~------~~~~~~~l~D~~G~~~~~~~~-----~~~~~~ 82 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGS--NVEEIV------YKNIRFLMWDIGGQESLRSSW-----NTYYTN 82 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc--ceEEEE------ECCeEEEEEECCCCHHHHHHH-----HHHhhc
Confidence 6899999999999999999964 22 222222 111111 124678899999987665552 223444
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
+. +++++|.+.+.++ .....| +.+.+... .+
T Consensus 83 ~d~vi~V~D~s~~~~~-~~~~~~---l~~~~~~~--------------------------------------~~------ 114 (174)
T cd04153 83 TDAVILVIDSTDRERL-PLTKEE---LYKMLAHE--------------------------------------DL------ 114 (174)
T ss_pred CCEEEEEEECCCHHHH-HHHHHH---HHHHHhch--------------------------------------hh------
Confidence 44 4677888776542 222221 12222110 00
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHH-HHHHHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIR-KFCLKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR-~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
..+|+++|+||+|+... .+.++ +.+.+. ..+..++..++.+|++++.+++.++++|..|
T Consensus 115 ----~~~p~viv~NK~Dl~~~------~~~~~---i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~~ 174 (174)
T cd04153 115 ----RKAVLLVLANKQDLKGA------MTPAE---ISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174 (174)
T ss_pred ----cCCCEEEEEECCCCCCC------CCHHH---HHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhcC
Confidence 16899999999998531 12222 222221 1122345578999999999999999998643
No 500
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.30 E-value=3.3e-12 Score=111.22 Aligned_cols=150 Identities=23% Similarity=0.317 Sum_probs=86.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 22 ILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 22 v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
++|+|++|||||||+++|.+... |+.|. ....+. .....+.+|+++|...+..+... .+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~----~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~-----~~~~~ 68 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGF----NMRKVT----KGNVTLKVWDLGGQPRFRSMWER-----YCRGV 68 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCc----ceEEEE----ECCEEEEEEECCCCHhHHHHHHH-----HHhcC
Confidence 78999999999999999997632 22221 111111 12256889999998766555222 22333
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+.+.. +.....|. .+.....
T Consensus 69 d~ii~v~d~~~~~~-~~~~~~~~---~~~~~~~----------------------------------------------- 97 (159)
T cd04159 69 NAIVYVVDAADRTA-LEAAKNEL---HDLLEKP----------------------------------------------- 97 (159)
T ss_pred CEEEEEEECCCHHH-HHHHHHHH---HHHHcCh-----------------------------------------------
Confidence 3 356677766544 22222221 1111100
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHH-HHHHHhCCeEEEeccCCcccHHHHHHHHHH
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIR-KFCLKFGAGLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR-~l~~~~Gasli~tS~k~~~n~~~l~~~l~h 245 (415)
...++|+++|+||+|+... ...+.+...+. ......+..++.+|++++.+++.++++|..
T Consensus 98 -~~~~~p~iiv~nK~D~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 98 -SLEGIPLLVLGNKNDLPGA---------LSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred -hhcCCCEEEEEeCccccCC---------cCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 0017899999999998532 11111111111 111223467899999999999999998853
Done!