Query psy13975
Match_columns 415
No_of_seqs 473 out of 2402
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 16:24:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 99.9 9.2E-24 3.2E-28 198.8 11.2 165 4-231 19-205 (235)
2 3rlf_A Maltose/maltodextrin im 99.9 4.4E-23 1.5E-27 206.3 16.2 165 3-231 16-193 (381)
3 3tui_C Methionine import ATP-b 99.9 3.7E-23 1.3E-27 205.6 15.1 172 4-242 42-230 (366)
4 3fvq_A Fe(3+) IONS import ATP- 99.9 5.7E-23 2E-27 204.1 15.6 172 3-241 17-204 (359)
5 4g1u_C Hemin import ATP-bindin 99.9 3E-23 1E-27 198.8 12.4 173 3-242 24-214 (266)
6 1z47_A CYSA, putative ABC-tran 99.9 2.1E-22 7.2E-27 200.0 16.9 164 3-230 28-204 (355)
7 2yyz_A Sugar ABC transporter, 99.9 2.4E-22 8.3E-27 199.9 17.1 164 3-230 16-192 (359)
8 1ji0_A ABC transporter; ATP bi 99.9 1.4E-22 4.9E-27 191.2 14.4 165 3-231 19-198 (240)
9 2olj_A Amino acid ABC transpor 99.9 6.9E-23 2.4E-27 195.9 12.2 169 3-230 37-217 (263)
10 3gfo_A Cobalt import ATP-bindi 99.9 7.3E-23 2.5E-27 196.9 12.5 167 4-232 22-204 (275)
11 2it1_A 362AA long hypothetical 99.9 2.6E-22 8.8E-27 199.9 16.7 165 3-231 16-193 (362)
12 1g6h_A High-affinity branched- 99.9 3.6E-23 1.2E-27 197.3 10.2 179 3-232 20-213 (257)
13 2pcj_A ABC transporter, lipopr 99.9 9.9E-23 3.4E-27 190.4 12.6 165 3-231 17-199 (224)
14 1oxx_K GLCV, glucose, ABC tran 99.9 2.1E-22 7.1E-27 200.3 15.4 163 5-230 20-199 (353)
15 1v43_A Sugar-binding transport 99.9 3.1E-22 1E-26 200.1 16.6 165 3-231 24-201 (372)
16 1vpl_A ABC transporter, ATP-bi 99.9 7.2E-23 2.5E-27 195.1 10.9 165 3-231 28-205 (256)
17 1b0u_A Histidine permease; ABC 99.9 8.6E-23 2.9E-27 195.2 11.3 176 3-241 19-218 (262)
18 3d31_A Sulfate/molybdate ABC t 99.9 9.2E-23 3.1E-27 202.3 11.2 162 5-230 15-186 (348)
19 2ixe_A Antigen peptide transpo 99.9 9.8E-23 3.3E-27 195.8 11.0 165 3-231 32-216 (271)
20 1g29_1 MALK, maltose transport 99.9 3.8E-22 1.3E-26 199.6 15.3 165 3-230 16-198 (372)
21 2qi9_C Vitamin B12 import ATP- 99.9 5E-22 1.7E-26 188.5 13.9 163 4-231 14-192 (249)
22 2yz2_A Putative ABC transporte 99.9 4.3E-22 1.5E-26 190.8 12.3 170 3-231 20-197 (266)
23 2ff7_A Alpha-hemolysin translo 99.9 4.4E-22 1.5E-26 188.7 11.3 165 3-231 22-203 (247)
24 1sgw_A Putative ABC transporte 99.9 3.9E-22 1.3E-26 185.1 10.6 160 4-232 23-193 (214)
25 2nq2_C Hypothetical ABC transp 99.9 1.2E-21 4.1E-26 186.4 13.7 153 3-230 18-187 (253)
26 2ihy_A ABC transporter, ATP-bi 99.9 3.7E-22 1.3E-26 192.5 9.4 167 3-231 34-222 (279)
27 2d2e_A SUFC protein; ABC-ATPas 99.9 1.5E-22 5.3E-27 192.2 5.4 169 3-231 16-202 (250)
28 3nh6_A ATP-binding cassette SU 99.9 5.9E-22 2E-26 193.2 9.6 165 3-231 67-248 (306)
29 1mv5_A LMRA, multidrug resista 99.9 4.4E-22 1.5E-26 188.2 7.7 163 3-231 15-197 (243)
30 2onk_A Molybdate/tungstate ABC 99.8 1.8E-20 6.2E-25 176.8 17.1 161 5-230 14-185 (240)
31 2zu0_C Probable ATP-dependent 99.8 3.3E-22 1.1E-26 191.7 5.0 173 3-231 33-223 (267)
32 2ghi_A Transport protein; mult 99.8 5.1E-21 1.7E-25 182.7 9.7 162 3-231 33-213 (260)
33 3gd7_A Fusion complex of cysti 99.8 8.4E-21 2.9E-25 190.8 10.4 164 3-231 34-213 (390)
34 2pze_A Cystic fibrosis transme 99.8 1E-20 3.5E-25 177.2 8.3 151 3-231 21-189 (229)
35 3b5x_A Lipid A export ATP-bind 99.8 6.4E-20 2.2E-24 194.0 13.6 169 3-231 356-538 (582)
36 2pjz_A Hypothetical protein ST 99.8 1.3E-20 4.3E-25 180.2 7.4 158 3-231 18-184 (263)
37 2cbz_A Multidrug resistance-as 99.8 1.4E-20 5E-25 177.2 7.0 151 3-231 18-188 (237)
38 3b60_A Lipid A export ATP-bind 99.8 6.4E-20 2.2E-24 194.1 12.5 165 3-231 356-538 (582)
39 3qf4_B Uncharacterized ABC tra 99.8 8.7E-20 3E-24 193.6 11.7 180 3-232 368-550 (598)
40 4a82_A Cystic fibrosis transme 99.8 1.1E-19 3.9E-24 191.9 10.9 166 3-232 354-536 (578)
41 2yl4_A ATP-binding cassette SU 99.8 9.2E-20 3.2E-24 193.3 9.4 164 4-231 358-541 (595)
42 2bbs_A Cystic fibrosis transme 99.8 7.9E-20 2.7E-24 177.0 8.0 151 3-231 51-218 (290)
43 3qf4_A ABC transporter, ATP-bi 99.8 9.7E-20 3.3E-24 192.8 9.3 165 3-231 356-537 (587)
44 4dkx_A RAS-related protein RAB 99.8 1.1E-18 3.8E-23 162.0 10.6 158 20-250 14-177 (216)
45 4f4c_A Multidrug resistance pr 99.7 8.9E-19 3E-23 200.5 8.2 178 3-231 1092-1275(1321)
46 3ozx_A RNAse L inhibitor; ATP 99.7 7.4E-18 2.5E-22 176.3 12.1 159 5-241 283-451 (538)
47 3bk7_A ABC transporter ATP-bin 99.7 5.6E-18 1.9E-22 179.5 11.0 159 4-241 370-537 (607)
48 3g5u_A MCG1178, multidrug resi 99.7 4.7E-18 1.6E-22 194.1 10.5 165 3-231 403-584 (1284)
49 4f4c_A Multidrug resistance pr 99.7 6.8E-18 2.3E-22 193.2 11.0 179 2-231 430-612 (1321)
50 1yqt_A RNAse L inhibitor; ATP- 99.7 5.9E-18 2E-22 177.2 9.4 159 5-242 301-468 (538)
51 1yqt_A RNAse L inhibitor; ATP- 99.7 7E-18 2.4E-22 176.7 6.5 168 4-231 36-217 (538)
52 3g5u_A MCG1178, multidrug resi 99.7 1.6E-17 5.5E-22 189.7 8.9 165 4-232 1047-1230(1284)
53 3bk7_A ABC transporter ATP-bin 99.7 1E-17 3.6E-22 177.4 6.5 169 4-231 106-287 (607)
54 3j16_B RLI1P; ribosome recycli 99.7 6E-17 2E-21 171.5 10.3 167 5-248 362-539 (608)
55 3q72_A GTP-binding protein RAD 99.7 4E-16 1.4E-20 136.2 10.7 156 20-248 3-163 (166)
56 3ux8_A Excinuclease ABC, A sub 99.6 3E-16 1E-20 168.5 10.9 64 123-231 198-263 (670)
57 1z08_A RAS-related protein RAB 99.6 2E-15 6.8E-20 132.0 14.1 157 20-249 7-169 (170)
58 3reg_A RHO-like small GTPase; 99.6 9.9E-16 3.4E-20 137.9 11.9 158 20-250 24-189 (194)
59 3t5g_A GTP-binding protein RHE 99.6 2.4E-15 8.4E-20 133.3 14.3 159 20-251 7-171 (181)
60 2ew1_A RAS-related protein RAB 99.6 9.3E-16 3.2E-20 140.1 11.2 157 20-249 27-189 (201)
61 3q3j_B RHO-related GTP-binding 99.6 1.3E-15 4.5E-20 140.2 12.0 161 20-250 28-204 (214)
62 2nzj_A GTP-binding protein REM 99.6 6.3E-16 2.1E-20 135.9 8.5 157 20-248 5-168 (175)
63 3oes_A GTPase rhebl1; small GT 99.6 1.4E-15 4.6E-20 138.1 10.7 158 20-250 25-188 (201)
64 3tw8_B RAS-related protein RAB 99.6 4.3E-15 1.5E-19 131.0 13.6 156 20-249 10-171 (181)
65 2bme_A RAB4A, RAS-related prot 99.6 3.1E-15 1.1E-19 133.0 12.3 159 20-249 11-173 (186)
66 1ek0_A Protein (GTP-binding pr 99.6 4.8E-15 1.6E-19 129.2 13.0 158 20-247 4-167 (170)
67 3ozx_A RNAse L inhibitor; ATP 99.6 3.5E-16 1.2E-20 163.6 6.8 167 6-231 14-196 (538)
68 2fu5_C RAS-related protein RAB 99.6 1.2E-15 4E-20 135.7 9.1 159 20-249 9-171 (183)
69 1tq4_A IIGP1, interferon-induc 99.6 9.2E-17 3.2E-21 162.5 1.8 184 4-247 37-251 (413)
70 3kkq_A RAS-related protein M-R 99.6 6.8E-16 2.3E-20 137.2 7.2 156 20-248 19-181 (183)
71 1z0j_A RAB-22, RAS-related pro 99.6 6.5E-15 2.2E-19 128.5 13.4 156 20-248 7-168 (170)
72 2iw3_A Elongation factor 3A; a 99.6 1.9E-15 6.6E-20 166.2 11.9 150 3-230 448-603 (986)
73 2g6b_A RAS-related protein RAB 99.6 2.3E-15 8E-20 133.0 10.3 158 20-250 11-175 (180)
74 1r2q_A RAS-related protein RAB 99.6 6.1E-15 2.1E-19 128.5 12.7 156 20-248 7-168 (170)
75 2fg5_A RAB-22B, RAS-related pr 99.6 3.7E-15 1.3E-19 134.2 11.6 157 20-249 24-186 (192)
76 1m7b_A RND3/RHOE small GTP-bin 99.6 4.7E-15 1.6E-19 132.5 12.1 159 20-249 8-183 (184)
77 1m2o_B GTP-binding protein SAR 99.6 3.8E-15 1.3E-19 134.3 11.4 165 4-246 12-189 (190)
78 2a9k_A RAS-related protein RAL 99.6 1.3E-15 4.3E-20 135.2 8.0 157 20-249 19-181 (187)
79 2gf9_A RAS-related protein RAB 99.6 3.7E-15 1.3E-19 133.6 11.1 156 20-248 23-184 (189)
80 2hup_A RAS-related protein RAB 99.6 2E-15 6.7E-20 137.4 9.3 159 20-249 30-193 (201)
81 3bc1_A RAS-related protein RAB 99.6 4.2E-15 1.5E-19 132.5 11.3 162 20-249 12-185 (195)
82 1zbd_A Rabphilin-3A; G protein 99.6 1.3E-14 4.6E-19 131.3 14.6 157 20-249 9-171 (203)
83 1u8z_A RAS-related protein RAL 99.6 1.4E-15 4.7E-20 132.2 7.7 156 20-248 5-166 (168)
84 2efe_B Small GTP-binding prote 99.6 2.9E-15 1E-19 132.5 9.8 158 20-250 13-176 (181)
85 2a5j_A RAS-related protein RAB 99.6 2.4E-15 8.1E-20 135.2 9.3 157 20-249 22-184 (191)
86 2p5s_A RAS and EF-hand domain 99.6 2.2E-15 7.7E-20 136.4 9.2 160 20-248 29-196 (199)
87 1z2a_A RAS-related protein RAB 99.6 2.5E-15 8.4E-20 131.0 9.1 155 20-248 6-166 (168)
88 1c1y_A RAS-related protein RAP 99.6 2.4E-15 8.3E-20 130.9 9.0 156 20-248 4-166 (167)
89 3tkl_A RAS-related protein RAB 99.6 8.7E-15 3E-19 131.3 12.9 157 20-249 17-179 (196)
90 3q85_A GTP-binding protein REM 99.6 2.8E-15 9.6E-20 131.1 9.3 158 20-248 3-166 (169)
91 2iw3_A Elongation factor 3A; a 99.6 1.2E-15 4.1E-20 167.8 8.6 46 3-51 686-731 (986)
92 3bwd_D RAC-like GTP-binding pr 99.6 6.2E-15 2.1E-19 130.5 11.7 161 20-248 9-180 (182)
93 3t1o_A Gliding protein MGLA; G 99.6 1.8E-15 6.2E-20 135.5 8.2 163 20-249 15-192 (198)
94 1kao_A RAP2A; GTP-binding prot 99.6 1.5E-15 5E-20 131.9 7.3 155 20-247 4-164 (167)
95 2oil_A CATX-8, RAS-related pro 99.6 6.5E-15 2.2E-19 132.3 11.8 157 20-249 26-188 (193)
96 2q3h_A RAS homolog gene family 99.6 4.5E-15 1.5E-19 134.2 10.6 159 20-249 21-195 (201)
97 1g16_A RAS-related protein SEC 99.6 3.7E-15 1.3E-19 130.1 9.7 158 20-249 4-165 (170)
98 1z0f_A RAB14, member RAS oncog 99.6 3.5E-15 1.2E-19 131.4 9.6 156 20-248 16-177 (179)
99 2hxs_A RAB-26, RAS-related pro 99.6 4.1E-15 1.4E-19 131.2 10.0 163 20-252 7-176 (178)
100 2fn4_A P23, RAS-related protei 99.6 1.9E-15 6.4E-20 133.4 7.8 157 20-249 10-172 (181)
101 3cpj_B GTP-binding protein YPT 99.6 6.7E-15 2.3E-19 135.9 11.8 158 20-250 14-177 (223)
102 1gwn_A RHO-related GTP-binding 99.6 7.3E-15 2.5E-19 134.4 11.9 158 20-248 29-203 (205)
103 3cbq_A GTP-binding protein REM 99.6 2.1E-15 7.3E-20 136.7 8.2 158 20-249 24-188 (195)
104 3dz8_A RAS-related protein RAB 99.6 1.3E-15 4.6E-20 136.8 6.5 159 20-249 24-186 (191)
105 2g3y_A GTP-binding protein GEM 99.6 6.7E-15 2.3E-19 135.9 11.2 157 20-248 38-202 (211)
106 2atx_A Small GTP binding prote 99.6 5.8E-15 2E-19 132.7 10.4 158 20-248 19-192 (194)
107 2bov_A RAla, RAS-related prote 99.6 2.4E-15 8.3E-20 136.0 7.9 157 20-249 15-177 (206)
108 1mh1_A RAC1; GTP-binding, GTPa 99.6 6.7E-15 2.3E-19 130.5 10.6 161 20-251 6-182 (186)
109 1f6b_A SAR1; gtpases, N-termin 99.6 1.4E-15 4.8E-20 138.1 6.1 160 5-246 15-196 (198)
110 3j16_B RLI1P; ribosome recycli 99.6 1.1E-15 3.6E-20 161.9 6.1 165 6-231 94-280 (608)
111 2il1_A RAB12; G-protein, GDP, 99.6 1E-14 3.6E-19 131.4 11.8 156 20-248 27-189 (192)
112 2y8e_A RAB-protein 6, GH09086P 99.6 5.8E-15 2E-19 130.0 9.9 156 20-248 15-176 (179)
113 2zej_A Dardarin, leucine-rich 99.6 2.4E-15 8.2E-20 134.6 7.2 166 20-251 3-180 (184)
114 1ky3_A GTP-binding protein YPT 99.6 1.7E-14 5.8E-19 127.3 12.6 162 20-248 9-177 (182)
115 2bcg_Y Protein YP2, GTP-bindin 99.6 6.5E-15 2.2E-19 133.8 10.1 157 20-249 9-171 (206)
116 2o52_A RAS-related protein RAB 99.6 4.1E-15 1.4E-19 135.0 8.7 159 20-249 26-188 (200)
117 3ihw_A Centg3; RAS, centaurin, 99.6 3.7E-15 1.3E-19 133.8 8.2 153 20-249 21-180 (184)
118 2j1l_A RHO-related GTP-binding 99.6 7.9E-15 2.7E-19 134.7 10.6 160 20-250 35-210 (214)
119 1z06_A RAS-related protein RAB 99.6 3.2E-15 1.1E-19 134.0 7.3 157 20-248 21-187 (189)
120 3llu_A RAS-related GTP-binding 99.6 3.1E-15 1E-19 135.3 7.3 170 19-247 20-195 (196)
121 3c5c_A RAS-like protein 12; GD 99.6 6.4E-15 2.2E-19 132.3 9.1 157 20-248 22-185 (187)
122 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.3E-14 4.4E-19 127.9 10.8 160 20-249 8-174 (177)
123 2fv8_A H6, RHO-related GTP-bin 99.6 2.4E-14 8.3E-19 130.5 13.0 162 20-252 26-203 (207)
124 4dsu_A GTPase KRAS, isoform 2B 99.6 3.1E-15 1.1E-19 133.1 6.9 157 19-249 4-166 (189)
125 3con_A GTPase NRAS; structural 99.6 1E-14 3.6E-19 130.4 10.2 156 20-249 22-183 (190)
126 3clv_A RAB5 protein, putative; 99.6 2.6E-14 9E-19 128.0 12.8 158 20-249 8-204 (208)
127 1x3s_A RAS-related protein RAB 99.6 1.4E-14 4.7E-19 129.7 10.9 159 20-251 16-180 (195)
128 2gco_A H9, RHO-related GTP-bin 99.6 1.1E-14 3.9E-19 132.1 10.3 159 20-249 26-200 (201)
129 2yc2_C IFT27, small RAB-relate 99.6 6.3E-15 2.1E-19 133.3 8.6 163 20-249 21-192 (208)
130 2erx_A GTP-binding protein DI- 99.5 3E-14 1E-18 124.4 11.9 156 20-247 4-165 (172)
131 2j0v_A RAC-like GTP-binding pr 99.5 1.3E-14 4.6E-19 132.3 10.0 160 20-250 10-181 (212)
132 4gzl_A RAS-related C3 botulinu 99.5 1.4E-14 4.8E-19 132.0 9.9 157 20-247 31-203 (204)
133 2f7s_A C25KG, RAS-related prot 99.5 5.7E-15 1.9E-19 135.3 7.3 162 20-249 26-199 (217)
134 2qnr_A Septin-2, protein NEDD5 99.5 2.6E-15 8.9E-20 146.1 5.3 191 3-249 11-214 (301)
135 2atv_A RERG, RAS-like estrogen 99.5 7.6E-15 2.6E-19 132.4 7.7 156 20-249 29-191 (196)
136 2ce2_X GTPase HRAS; signaling 99.5 8.1E-15 2.8E-19 126.9 7.1 155 20-248 4-164 (166)
137 1vg8_A RAS-related protein RAB 99.5 4.4E-14 1.5E-18 127.9 12.3 160 20-249 9-175 (207)
138 4djt_A GTP-binding nuclear pro 99.5 1.3E-14 4.5E-19 133.0 8.2 160 20-251 12-177 (218)
139 4bas_A ADP-ribosylation factor 99.5 6.8E-14 2.3E-18 125.7 12.7 164 19-249 17-189 (199)
140 2iwr_A Centaurin gamma 1; ANK 99.5 2.9E-14 9.8E-19 126.0 8.9 156 20-249 8-169 (178)
141 3cph_A RAS-related protein SEC 99.5 2.2E-14 7.5E-19 130.5 8.3 156 20-249 21-182 (213)
142 2cjw_A GTP-binding protein GEM 99.5 2.4E-14 8.4E-19 129.4 8.5 159 20-248 7-171 (192)
143 1upt_A ARL1, ADP-ribosylation 99.5 3.3E-14 1.1E-18 124.3 9.0 156 20-249 8-169 (171)
144 2f9l_A RAB11B, member RAS onco 99.5 9.1E-14 3.1E-18 125.9 12.0 157 20-249 6-168 (199)
145 3ux8_A Excinuclease ABC, A sub 99.5 3.1E-14 1E-18 152.9 8.6 34 3-39 335-368 (670)
146 1oix_A RAS-related protein RAB 99.5 1.1E-13 3.9E-18 124.7 10.3 156 20-248 30-191 (191)
147 2gf0_A GTP-binding protein DI- 99.5 2.8E-14 9.6E-19 128.2 6.2 157 20-249 9-171 (199)
148 3gj0_A GTP-binding nuclear pro 99.5 7.2E-15 2.5E-19 135.2 1.9 156 20-251 16-177 (221)
149 1r8s_A ADP-ribosylation factor 99.5 2.9E-14 9.9E-19 124.0 5.2 154 21-248 2-161 (164)
150 4aby_A DNA repair protein RECN 99.5 1.1E-13 3.7E-18 139.8 10.2 37 4-44 49-85 (415)
151 1ksh_A ARF-like protein 2; sma 99.4 1.1E-13 3.8E-18 123.3 7.9 157 20-250 19-181 (186)
152 2h57_A ADP-ribosylation factor 99.4 2E-13 7E-18 122.2 9.6 157 20-248 22-186 (190)
153 3l0i_B RAS-related protein RAB 99.4 8.2E-15 2.8E-19 132.7 0.2 158 20-248 34-195 (199)
154 3th5_A RAS-related C3 botulinu 99.2 8.1E-15 2.8E-19 133.1 0.0 164 20-247 31-203 (204)
155 1zj6_A ADP-ribosylation factor 99.4 4.7E-14 1.6E-18 126.1 4.9 158 20-251 17-180 (187)
156 1fzq_A ADP-ribosylation factor 99.4 4.8E-14 1.6E-18 125.9 3.8 155 20-248 17-177 (181)
157 2wji_A Ferrous iron transport 99.4 3.7E-13 1.3E-17 118.1 9.2 56 180-247 108-163 (165)
158 2qag_C Septin-7; cell cycle, c 99.4 6.5E-14 2.2E-18 141.9 4.9 99 131-245 120-223 (418)
159 2h17_A ADP-ribosylation factor 99.4 7.6E-14 2.6E-18 124.2 4.7 153 20-246 22-180 (181)
160 2wkq_A NPH1-1, RAS-related C3 99.4 6.7E-13 2.3E-17 129.0 11.1 159 20-249 156-330 (332)
161 4gp7_A Metallophosphoesterase; 99.4 5.6E-13 1.9E-17 118.6 9.5 30 8-40 1-30 (171)
162 1zd9_A ADP-ribosylation factor 99.4 1.6E-13 5.5E-18 123.0 5.8 155 20-248 23-184 (188)
163 3c5h_A Glucocorticoid receptor 99.4 1.2E-12 4.1E-17 124.0 12.0 55 180-247 198-253 (255)
164 2b6h_A ADP-ribosylation factor 99.4 7.7E-14 2.6E-18 125.8 3.6 155 20-248 30-190 (192)
165 3r7w_B Gtpase2, GTP-binding pr 99.4 8.4E-14 2.9E-18 136.3 3.8 164 21-249 1-174 (331)
166 2x77_A ADP-ribosylation factor 99.4 1.2E-13 4.2E-18 123.5 4.5 156 20-249 23-184 (189)
167 3r7w_A Gtpase1, GTP-binding pr 99.4 1.3E-12 4.4E-17 127.2 12.0 164 19-249 3-181 (307)
168 1udx_A The GTP-binding protein 99.4 8.5E-13 2.9E-17 133.7 10.3 170 6-251 147-327 (416)
169 2fh5_B SR-beta, signal recogni 99.4 8.8E-13 3E-17 120.3 8.5 80 20-107 8-91 (214)
170 3b85_A Phosphate starvation-in 99.4 4.5E-15 1.5E-19 136.8 -7.3 120 4-158 14-133 (208)
171 1moz_A ARL1, ADP-ribosylation 99.4 1.3E-13 4.4E-18 122.2 2.0 155 20-248 19-179 (183)
172 2cxx_A Probable GTP-binding pr 99.3 1.2E-12 4.1E-17 116.4 7.9 56 180-249 122-184 (190)
173 3sop_A Neuronal-specific septi 99.3 1E-13 3.6E-18 132.7 0.8 172 20-226 3-177 (270)
174 3pqc_A Probable GTP-binding pr 99.3 1.6E-12 5.3E-17 116.0 7.8 60 180-248 133-193 (195)
175 2npi_A Protein CLP1; CLP1-PCF1 99.3 2.7E-14 9.3E-19 146.5 -4.8 43 6-51 128-172 (460)
176 3pih_A Uvrabc system protein A 99.3 7.4E-12 2.5E-16 137.5 14.0 59 130-231 806-867 (916)
177 1svi_A GTP-binding protein YSX 99.3 1.7E-12 5.8E-17 116.2 7.2 59 180-247 134-193 (195)
178 2wjg_A FEOB, ferrous iron tran 99.3 4.1E-12 1.4E-16 113.1 9.3 58 180-249 112-169 (188)
179 2lkc_A Translation initiation 99.3 1.6E-12 5.4E-17 114.4 6.4 158 20-250 9-172 (178)
180 2vf7_A UVRA2, excinuclease ABC 99.3 1E-11 3.4E-16 135.4 12.8 35 4-41 511-546 (842)
181 1pui_A ENGB, probable GTP-bind 99.3 3.9E-12 1.3E-16 115.5 7.9 60 180-248 137-198 (210)
182 2dyk_A GTP-binding protein; GT 99.3 2.3E-12 7.8E-17 111.3 5.2 52 180-247 108-160 (161)
183 2qu8_A Putative nucleolar GTP- 99.3 8.3E-12 2.8E-16 115.5 8.4 62 180-249 142-205 (228)
184 3o47_A ADP-ribosylation factor 99.3 1.6E-12 5.4E-17 127.9 3.6 156 20-249 166-327 (329)
185 2ygr_A Uvrabc system protein A 99.3 1.6E-11 5.4E-16 134.9 11.5 33 4-39 656-688 (993)
186 2gj8_A MNME, tRNA modification 99.2 3.7E-13 1.3E-17 119.3 -1.5 50 180-247 115-164 (172)
187 2r6f_A Excinuclease ABC subuni 99.2 4.9E-12 1.7E-16 138.5 6.6 33 4-39 638-670 (972)
188 3b1v_A Ferrous iron uptake tra 99.2 1.3E-11 4.6E-16 118.1 8.2 56 180-247 107-162 (272)
189 1z6g_A Guanylate kinase; struc 99.2 1.1E-12 3.8E-17 121.4 0.5 41 5-51 12-52 (218)
190 3lvq_E ARF-GAP with SH3 domain 99.2 4E-11 1.4E-15 124.0 10.5 156 20-249 323-484 (497)
191 1ye8_A Protein THEP1, hypothet 99.2 4.5E-12 1.5E-16 113.8 2.0 24 21-44 2-25 (178)
192 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 2.2E-10 7.5E-15 114.2 13.9 59 130-231 280-344 (365)
193 3dpu_A RAB family protein; roc 99.2 2.1E-11 7.1E-16 127.5 6.5 157 20-251 42-210 (535)
194 4dhe_A Probable GTP-binding pr 99.2 9.5E-11 3.3E-15 107.3 10.0 61 180-249 144-211 (223)
195 3iev_A GTP-binding protein ERA 99.1 5.9E-11 2E-15 115.5 8.1 60 180-250 122-183 (308)
196 1nrj_B SR-beta, signal recogni 99.1 2.3E-11 7.8E-16 111.2 4.7 153 20-236 13-171 (218)
197 3a1s_A Iron(II) transport prot 99.1 1.2E-10 4.3E-15 110.4 8.6 57 180-248 110-166 (258)
198 3iby_A Ferrous iron transport 99.1 1.4E-10 4.7E-15 110.0 8.9 55 180-246 110-164 (256)
199 3b9q_A Chloroplast SRP recepto 99.1 6.2E-12 2.1E-16 122.2 -2.6 49 6-58 90-138 (302)
200 3qq5_A Small GTP-binding prote 99.0 1.7E-11 5.9E-16 124.4 -0.2 122 180-320 140-276 (423)
201 3k53_A Ferrous iron transport 99.0 9.5E-11 3.2E-15 111.7 4.9 57 181-249 110-166 (271)
202 1e69_A Chromosome segregation 99.0 1.4E-09 4.8E-14 106.3 12.1 59 130-232 220-282 (322)
203 3i8s_A Ferrous iron transport 99.0 1.3E-09 4.4E-14 104.2 11.2 58 180-249 112-169 (274)
204 2pt7_A CAG-ALFA; ATPase, prote 99.0 3.6E-10 1.2E-14 111.1 7.0 44 5-51 160-203 (330)
205 3sjy_A Translation initiation 99.0 2.2E-09 7.5E-14 108.2 12.7 59 181-248 130-191 (403)
206 2og2_A Putative signal recogni 99.0 2.6E-11 8.9E-16 120.4 -1.5 48 7-58 148-195 (359)
207 2e87_A Hypothetical protein PH 99.0 2.5E-09 8.4E-14 106.1 12.7 57 180-249 280-336 (357)
208 1ega_A Protein (GTP-binding pr 99.0 1.1E-09 3.7E-14 106.2 8.8 58 180-248 116-174 (301)
209 2qag_A Septin-2, protein NEDD5 99.0 1.1E-10 3.7E-15 116.2 1.6 60 180-249 174-233 (361)
210 2qtf_A Protein HFLX, GTP-bindi 99.0 2.1E-09 7.2E-14 107.0 10.7 62 180-251 292-356 (364)
211 2qag_B Septin-6, protein NEDD5 98.9 5.1E-10 1.7E-14 113.2 5.3 35 6-43 30-66 (427)
212 1mky_A Probable GTP-binding pr 98.9 4.6E-09 1.6E-13 107.0 11.8 63 180-249 292-355 (439)
213 3gee_A MNME, tRNA modification 98.9 1.4E-09 4.9E-14 111.9 8.1 156 20-248 234-397 (476)
214 1wf3_A GTP-binding protein; GT 98.9 1.3E-09 4.5E-14 105.7 7.3 158 20-249 8-173 (301)
215 1znw_A Guanylate kinase, GMP k 98.9 2.1E-09 7.2E-14 98.1 8.1 38 2-44 8-45 (207)
216 2v9p_A Replication protein E1; 98.9 2.5E-11 8.4E-16 118.0 -6.3 42 4-51 114-155 (305)
217 1lnz_A SPO0B-associated GTP-bi 98.9 1E-09 3.5E-14 108.4 4.7 168 7-250 149-331 (342)
218 3lxx_A GTPase IMAP family memb 98.9 6.1E-09 2.1E-13 96.9 9.3 63 180-247 145-212 (239)
219 1cr0_A DNA primase/helicase; R 98.9 1.4E-09 4.9E-14 104.6 5.1 47 2-51 21-68 (296)
220 1jny_A EF-1-alpha, elongation 98.9 2.1E-09 7E-14 109.6 6.5 155 20-238 7-202 (435)
221 4dcu_A GTP-binding protein ENG 98.8 9.2E-10 3.1E-14 112.8 3.7 63 180-249 306-369 (456)
222 1wb1_A Translation elongation 98.8 3E-09 1E-13 109.7 7.6 60 180-248 125-188 (482)
223 3thx_B DNA mismatch repair pro 98.8 2.1E-09 7.2E-14 118.3 6.6 36 3-41 660-695 (918)
224 2hjg_A GTP-binding protein ENG 98.8 6.9E-10 2.4E-14 113.0 2.3 63 180-249 286-349 (436)
225 1tf7_A KAIC; homohexamer, hexa 98.8 4.6E-11 1.6E-15 124.6 -6.6 47 2-51 24-73 (525)
226 3thx_A DNA mismatch repair pro 98.8 3.9E-09 1.3E-13 116.4 7.1 34 3-39 649-682 (934)
227 2qm8_A GTPase/ATPase; G protei 98.8 1.5E-09 5.2E-14 106.9 3.4 51 4-58 43-93 (337)
228 1d2e_A Elongation factor TU (E 98.8 7.1E-09 2.4E-13 104.3 8.1 61 180-248 118-194 (397)
229 3qkt_A DNA double-strand break 98.8 2.9E-08 9.9E-13 97.7 12.2 32 5-40 13-44 (339)
230 3j2k_7 ERF3, eukaryotic polype 98.8 1.8E-08 6.1E-13 102.8 10.8 57 180-241 154-217 (439)
231 2dpy_A FLII, flagellum-specifi 98.8 1.1E-09 3.6E-14 111.7 1.7 45 3-51 145-189 (438)
232 1htw_A HI0065; nucleotide-bind 98.8 6E-10 2E-14 98.0 -0.8 44 4-51 21-64 (158)
233 2ged_A SR-beta, signal recogni 98.8 7.5E-09 2.6E-13 92.2 6.0 91 20-117 49-141 (193)
234 1mky_A Probable GTP-binding pr 98.8 1E-08 3.5E-13 104.4 7.7 55 180-248 110-165 (439)
235 2obl_A ESCN; ATPase, hydrolase 98.7 2.1E-09 7.1E-14 106.4 2.2 45 3-51 59-103 (347)
236 2dy1_A Elongation factor G; tr 98.7 7.1E-09 2.4E-13 111.1 6.0 31 10-43 3-33 (665)
237 3t5d_A Septin-7; GTP-binding p 98.7 5.7E-09 1.9E-13 99.5 4.7 58 180-246 144-201 (274)
238 3aez_A Pantothenate kinase; tr 98.7 5.3E-11 1.8E-15 116.2 -9.8 33 13-48 87-119 (312)
239 3izy_P Translation initiation 98.7 1.7E-09 5.8E-14 112.7 0.1 157 20-248 5-167 (537)
240 2o8b_B DNA mismatch repair pro 98.7 3.8E-09 1.3E-13 117.8 1.9 38 3-44 769-813 (1022)
241 1s0u_A EIF-2-gamma, translatio 98.7 4.6E-08 1.6E-12 98.6 9.7 58 182-248 137-197 (408)
242 2c78_A Elongation factor TU-A; 98.7 1.9E-08 6.4E-13 101.4 6.8 60 180-247 127-210 (405)
243 3p26_A Elongation factor 1 alp 98.7 1.4E-08 4.8E-13 104.8 5.6 52 180-238 170-227 (483)
244 1r5b_A Eukaryotic peptide chai 98.7 1E-08 3.5E-13 105.4 4.2 55 180-239 180-242 (467)
245 3mca_A HBS1, elongation factor 98.7 1.8E-08 6E-13 106.5 6.1 60 180-246 314-394 (592)
246 2hjg_A GTP-binding protein ENG 98.7 5.8E-09 2E-13 106.2 2.3 53 180-248 111-164 (436)
247 1zun_B Sulfate adenylate trans 98.7 1.9E-08 6.6E-13 102.3 6.1 52 180-238 156-213 (434)
248 1kk1_A EIF2gamma; initiation o 98.6 7E-08 2.4E-12 97.4 10.1 59 181-248 138-199 (410)
249 2elf_A Protein translation elo 98.6 3.2E-08 1.1E-12 98.7 6.4 145 21-247 23-178 (370)
250 1g7s_A Translation initiation 98.6 2.3E-07 7.7E-12 98.0 13.2 80 20-106 6-105 (594)
251 1tf7_A KAIC; homohexamer, hexa 98.6 2E-08 6.8E-13 104.7 5.0 34 10-46 275-308 (525)
252 2o5v_A DNA replication and rep 98.6 2.6E-07 8.8E-12 91.7 12.2 35 3-41 14-48 (359)
253 1f60_A Elongation factor EEF1A 98.6 5.6E-08 1.9E-12 99.6 7.6 51 180-237 144-200 (458)
254 4fid_A G protein alpha subunit 98.6 7.3E-08 2.5E-12 94.8 7.9 28 222-249 301-328 (340)
255 3izq_1 HBS1P, elongation facto 98.6 4.3E-08 1.5E-12 103.9 6.6 53 180-239 304-362 (611)
256 1ewq_A DNA mismatch repair pro 98.6 2E-08 7E-13 108.7 4.2 41 3-49 566-607 (765)
257 1rj9_A FTSY, signal recognitio 98.6 9.9E-09 3.4E-13 99.7 1.0 38 20-58 103-140 (304)
258 3ohm_A Guanine nucleotide-bind 98.5 2.2E-07 7.5E-12 90.9 10.0 73 180-252 234-321 (327)
259 3cb4_D GTP-binding protein LEP 98.5 2.7E-08 9.1E-13 105.1 3.7 56 180-248 123-181 (599)
260 2p67_A LAO/AO transport system 98.5 1.1E-08 3.9E-13 100.7 0.7 42 5-49 45-86 (341)
261 1xzp_A Probable tRNA modificat 98.5 8.9E-09 3E-13 106.1 -0.0 55 180-248 350-404 (482)
262 2xtp_A GTPase IMAP family memb 98.5 4.9E-08 1.7E-12 91.8 4.9 61 180-249 138-208 (260)
263 3avx_A Elongation factor TS, e 98.5 1.2E-07 4E-12 105.6 8.4 60 180-247 411-484 (1289)
264 3lxw_A GTPase IMAP family memb 98.5 2.2E-07 7.6E-12 87.2 9.0 60 180-248 139-207 (247)
265 3tr5_A RF-3, peptide chain rel 98.5 2.8E-07 9.6E-12 96.0 10.5 25 224-248 252-276 (528)
266 2ywe_A GTP-binding protein LEP 98.5 8.8E-08 3E-12 101.0 6.7 57 180-249 125-184 (600)
267 3geh_A MNME, tRNA modification 98.5 3.5E-08 1.2E-12 101.2 2.9 152 20-249 225-384 (462)
268 4dcu_A GTP-binding protein ENG 98.5 1.6E-08 5.3E-13 103.6 0.1 54 180-248 131-184 (456)
269 2jeo_A Uridine-cytidine kinase 98.4 6E-08 2.1E-12 90.7 2.9 38 3-43 12-49 (245)
270 3t34_A Dynamin-related protein 98.4 1.4E-08 4.8E-13 100.6 -1.6 52 180-242 203-254 (360)
271 2w0m_A SSO2452; RECA, SSPF, un 98.4 1.5E-07 5.1E-12 86.0 5.4 45 4-51 10-55 (235)
272 3euj_A Chromosome partition pr 98.4 8E-08 2.7E-12 98.7 3.3 50 4-58 18-67 (483)
273 1zo1_I IF2, translation initia 98.4 4.2E-08 1.4E-12 101.3 0.8 154 20-246 5-164 (501)
274 4a74_A DNA repair and recombin 98.4 6E-07 2E-11 82.1 7.4 31 12-45 21-51 (231)
275 3lnc_A Guanylate kinase, GMP k 98.4 1.1E-07 3.9E-12 87.8 2.5 39 4-45 15-54 (231)
276 1pzn_A RAD51, DNA repair and r 98.3 2.8E-07 9.7E-12 91.1 4.9 39 6-47 120-161 (349)
277 2gza_A Type IV secretion syste 98.3 7.5E-08 2.6E-12 95.6 0.6 44 5-51 164-207 (361)
278 1nlf_A Regulatory protein REPA 98.3 1.9E-07 6.4E-12 89.0 3.1 29 12-43 26-54 (279)
279 2ehv_A Hypothetical protein PH 98.3 3.5E-07 1.2E-11 84.7 4.8 35 12-49 26-62 (251)
280 2wsm_A Hydrogenase expression/ 98.3 3.2E-06 1.1E-10 76.9 10.8 61 180-249 154-214 (221)
281 2eyu_A Twitching motility prot 98.3 6.9E-08 2.4E-12 91.6 -0.7 43 4-51 15-58 (261)
282 1nij_A Hypothetical protein YJ 98.3 1E-06 3.4E-11 85.9 7.5 31 20-50 5-43 (318)
283 2www_A Methylmalonic aciduria 98.3 9.2E-07 3.2E-11 87.3 7.1 32 20-51 75-106 (349)
284 2aka_B Dynamin-1; fusion prote 98.3 1.3E-07 4.4E-12 90.5 0.9 55 180-245 192-249 (299)
285 1wxq_A GTP-binding protein; st 98.3 8.2E-06 2.8E-10 81.9 13.9 49 180-241 214-262 (397)
286 2yv5_A YJEQ protein; hydrolase 98.3 2.3E-07 7.7E-12 89.9 1.9 35 13-51 162-196 (302)
287 2j69_A Bacterial dynamin-like 98.2 1.1E-06 3.9E-11 94.3 7.5 23 20-42 70-92 (695)
288 2rcn_A Probable GTPase ENGC; Y 98.2 1E-06 3.4E-11 87.3 5.9 42 6-51 206-248 (358)
289 1wb9_A DNA mismatch repair pro 98.2 7.3E-07 2.5E-11 97.1 5.1 36 3-42 595-630 (800)
290 2yhs_A FTSY, cell division pro 98.2 2.2E-07 7.6E-12 95.4 0.4 43 6-51 283-325 (503)
291 2cvh_A DNA repair and recombin 98.2 4.2E-06 1.4E-10 75.9 8.9 34 5-41 8-42 (220)
292 1yrb_A ATP(GTP)binding protein 98.2 5.5E-06 1.9E-10 77.4 9.4 67 180-247 171-255 (262)
293 3tr0_A Guanylate kinase, GMP k 98.1 7.1E-07 2.4E-11 80.3 2.6 31 10-43 1-31 (205)
294 3def_A T7I23.11 protein; chlor 98.1 6.2E-07 2.1E-11 84.7 2.3 58 20-81 37-98 (262)
295 2hf9_A Probable hydrogenase ni 98.1 8.7E-08 3E-12 87.7 -3.7 61 179-248 163-223 (226)
296 3ec2_A DNA replication protein 98.1 1.1E-06 3.9E-11 77.7 3.2 36 10-48 32-67 (180)
297 1sq5_A Pantothenate kinase; P- 98.1 2.8E-07 9.5E-12 89.4 -1.9 35 14-51 78-114 (308)
298 3jvv_A Twitching mobility prot 98.0 3.8E-06 1.3E-10 83.2 5.9 37 12-51 119-156 (356)
299 2oap_1 GSPE-2, type II secreti 98.0 4.9E-07 1.7E-11 93.8 -0.9 45 4-51 248-292 (511)
300 2rdo_7 EF-G, elongation factor 98.0 1.4E-05 4.7E-10 86.1 10.3 25 223-247 262-286 (704)
301 1h65_A Chloroplast outer envel 98.0 2.5E-06 8.5E-11 80.8 4.0 58 20-81 40-101 (270)
302 2xtz_A Guanine nucleotide-bind 98.0 1.1E-05 3.8E-10 79.7 8.8 34 67-105 183-217 (354)
303 2h5e_A Peptide chain release f 98.0 6.1E-06 2.1E-10 85.9 7.1 24 224-247 253-276 (529)
304 1cip_A Protein (guanine nucleo 98.0 7.3E-06 2.5E-10 81.0 7.3 131 67-250 193-345 (353)
305 3p32_A Probable GTPase RV1496/ 98.0 5.4E-06 1.8E-10 81.9 6.1 60 180-248 217-283 (355)
306 1zp6_A Hypothetical protein AT 98.0 3.9E-06 1.3E-10 74.6 4.6 35 12-51 5-39 (191)
307 1u0l_A Probable GTPase ENGC; p 98.0 8.9E-06 3E-10 78.5 7.4 106 68-248 64-172 (301)
308 3kta_A Chromosome segregation 98.0 3.1E-06 1.1E-10 74.8 3.5 41 4-48 13-55 (182)
309 1lw7_A Transcriptional regulat 98.0 7.7E-07 2.6E-11 88.2 -0.7 39 6-47 158-198 (365)
310 1dar_A EF-G, elongation factor 98.0 6.6E-06 2.3E-10 88.4 6.1 25 223-247 256-280 (691)
311 1s96_A Guanylate kinase, GMP k 98.0 2.8E-06 9.5E-11 78.4 2.8 34 9-45 9-42 (219)
312 1lvg_A Guanylate kinase, GMP k 98.0 2E-06 6.8E-11 77.8 1.7 28 14-44 2-29 (198)
313 2i3b_A HCR-ntpase, human cance 97.9 2.1E-06 7.3E-11 77.4 1.4 51 20-74 2-52 (189)
314 2j41_A Guanylate kinase; GMP, 97.9 4.6E-06 1.6E-10 74.9 3.4 35 11-48 1-35 (207)
315 3a00_A Guanylate kinase, GMP k 97.9 3.2E-06 1.1E-10 75.4 2.2 30 20-49 2-31 (186)
316 1u0l_A Probable GTPase ENGC; p 97.9 3.1E-06 1.1E-10 81.7 2.1 38 11-51 164-201 (301)
317 1zcb_A G alpha I/13; GTP-bindi 97.9 1.2E-05 4E-10 79.8 6.2 70 180-249 268-353 (362)
318 3vaa_A Shikimate kinase, SK; s 97.9 5.6E-06 1.9E-10 74.6 3.6 38 3-43 12-49 (199)
319 1n0w_A DNA repair protein RAD5 97.9 3.8E-05 1.3E-09 70.5 8.6 30 13-45 21-52 (243)
320 3e70_C DPA, signal recognition 97.8 4.7E-06 1.6E-10 81.6 2.2 42 14-59 127-168 (328)
321 1jal_A YCHF protein; nucleotid 97.8 2.4E-05 8.3E-10 77.4 7.4 42 180-232 199-240 (363)
322 1azs_C GS-alpha; complex (lyas 97.8 3.3E-05 1.1E-09 77.5 8.4 28 222-249 358-385 (402)
323 2xex_A Elongation factor G; GT 97.8 2.2E-05 7.5E-10 84.3 6.8 24 224-247 255-278 (693)
324 3c8u_A Fructokinase; YP_612366 97.8 3.8E-06 1.3E-10 76.3 0.6 31 13-46 19-49 (208)
325 2kjq_A DNAA-related protein; s 97.8 1.6E-05 5.6E-10 68.6 4.5 28 15-45 35-62 (149)
326 2x2e_A Dynamin-1; nitration, h 97.8 3.1E-06 1.1E-10 83.5 -0.3 57 180-245 197-254 (353)
327 2dby_A GTP-binding protein; GD 97.8 3E-05 1E-09 77.1 6.7 50 180-237 201-250 (368)
328 2ewv_A Twitching motility prot 97.8 3E-06 1E-10 84.4 -0.5 42 5-51 127-169 (372)
329 1jwy_B Dynamin A GTPase domain 97.7 7.9E-06 2.7E-10 78.6 1.9 24 20-43 25-48 (315)
330 1t9h_A YLOQ, probable GTPase E 97.7 3.6E-06 1.2E-10 81.6 -0.8 38 11-51 168-205 (307)
331 3asz_A Uridine kinase; cytidin 97.7 7.4E-06 2.5E-10 74.1 1.2 30 13-45 3-32 (211)
332 1p9r_A General secretion pathw 97.7 5.9E-06 2E-10 83.5 0.1 42 5-51 158-199 (418)
333 1kgd_A CASK, peripheral plasma 97.7 1.8E-05 6E-10 70.2 2.8 25 20-44 6-30 (180)
334 1f2t_B RAD50 ABC-ATPase; DNA d 97.7 4.3E-05 1.5E-09 66.1 5.1 64 124-232 54-123 (148)
335 3lda_A DNA repair protein RAD5 97.6 0.00016 5.4E-09 72.6 9.6 31 13-46 175-207 (400)
336 1qhl_A Protein (cell division 97.6 1.3E-06 4.4E-11 81.2 -5.8 44 10-58 22-65 (227)
337 1n0u_A EF-2, elongation factor 97.6 4.8E-05 1.6E-09 83.4 5.6 21 20-40 20-40 (842)
338 2bbw_A Adenylate kinase 4, AK4 97.6 2.4E-05 8.3E-10 72.7 2.8 31 20-50 28-61 (246)
339 3nwj_A ATSK2; P loop, shikimat 97.6 4.5E-06 1.5E-10 78.6 -2.3 37 3-42 32-71 (250)
340 4eun_A Thermoresistant glucoki 97.5 4E-05 1.4E-09 68.9 3.0 30 11-43 24-53 (200)
341 3tau_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 68.9 3.5 29 14-45 6-34 (208)
342 3ney_A 55 kDa erythrocyte memb 97.5 5E-05 1.7E-09 68.8 2.9 32 10-44 13-44 (197)
343 2bdt_A BH3686; alpha-beta prot 97.4 5.1E-05 1.7E-09 67.3 2.7 28 20-50 3-30 (189)
344 2f1r_A Molybdopterin-guanine d 97.4 1.3E-05 4.6E-10 70.9 -1.1 37 20-57 3-42 (171)
345 3szr_A Interferon-induced GTP- 97.4 3.7E-05 1.3E-09 81.3 1.9 31 21-51 47-78 (608)
346 4e22_A Cytidylate kinase; P-lo 97.4 4.2E-05 1.4E-09 71.7 1.7 34 14-50 25-61 (252)
347 1zu4_A FTSY; GTPase, signal re 97.4 3E-05 1E-09 75.5 0.6 43 6-51 95-137 (320)
348 1svm_A Large T antigen; AAA+ f 97.4 2.4E-05 8.1E-10 78.0 -0.4 41 4-50 157-197 (377)
349 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 0.0001 3.6E-09 63.5 3.7 32 5-40 13-44 (149)
350 3uie_A Adenylyl-sulfate kinase 97.3 9.1E-05 3.1E-09 66.5 2.9 37 10-50 19-55 (200)
351 2qpt_A EH domain-containing pr 97.3 8E-05 2.7E-09 77.8 2.1 24 20-43 66-89 (550)
352 2x8a_A Nuclear valosin-contain 97.2 3.5E-05 1.2E-09 73.3 -0.7 36 5-45 35-70 (274)
353 1rz3_A Hypothetical protein rb 97.2 8.3E-05 2.8E-09 67.0 1.4 36 13-51 19-54 (201)
354 3pih_A Uvrabc system protein A 97.2 0.00018 6.1E-09 79.2 3.8 30 4-36 12-41 (916)
355 3tqc_A Pantothenate kinase; bi 97.2 4.9E-05 1.7E-09 74.1 -0.7 29 21-49 94-124 (321)
356 1kag_A SKI, shikimate kinase I 97.1 0.00015 5.1E-09 63.0 2.3 25 20-44 5-29 (173)
357 2vp4_A Deoxynucleoside kinase; 97.1 0.00014 4.7E-09 67.0 2.2 28 12-42 16-43 (230)
358 2yv5_A YJEQ protein; hydrolase 97.1 0.00026 9E-09 68.2 4.3 59 180-248 110-168 (302)
359 1ni3_A YCHF GTPase, YCHF GTP-b 97.1 0.00019 6.5E-09 71.8 3.3 27 12-41 16-42 (392)
360 1vma_A Cell division protein F 97.1 9.2E-05 3.2E-09 71.6 1.0 40 9-51 97-136 (306)
361 1knq_A Gluconate kinase; ALFA/ 97.1 0.0002 6.9E-09 62.5 2.9 24 20-43 9-32 (175)
362 1w1w_A Structural maintenance 97.1 0.00022 7.5E-09 72.0 3.3 34 11-47 21-54 (430)
363 3qks_A DNA double-strand break 97.0 0.00035 1.2E-08 63.2 3.7 32 5-40 13-44 (203)
364 2r6f_A Excinuclease ABC subuni 97.0 0.00043 1.5E-08 76.1 4.9 60 130-232 505-566 (972)
365 2ygr_A Uvrabc system protein A 97.0 0.00051 1.7E-08 75.8 5.4 60 130-232 522-583 (993)
366 1ls1_A Signal recognition part 97.0 0.00015 5.2E-09 69.7 1.1 40 7-51 91-130 (295)
367 2vf7_A UVRA2, excinuclease ABC 97.0 0.00055 1.9E-08 74.7 5.1 30 4-36 24-53 (842)
368 4eaq_A DTMP kinase, thymidylat 96.9 0.0003 1E-08 65.0 2.4 39 4-45 11-52 (229)
369 2qt1_A Nicotinamide riboside k 96.9 0.00037 1.3E-08 62.6 3.0 30 12-44 17-46 (207)
370 1ixz_A ATP-dependent metallopr 96.9 0.00011 3.9E-09 68.3 -0.5 35 5-44 40-74 (254)
371 3cr8_A Sulfate adenylyltranfer 96.9 0.00018 6.3E-09 75.0 0.9 34 12-48 365-398 (552)
372 1iy2_A ATP-dependent metallopr 96.9 0.00014 4.8E-09 68.8 -0.5 35 5-44 64-98 (278)
373 4ad8_A DNA repair protein RECN 96.8 0.00091 3.1E-08 69.2 5.3 57 131-231 399-457 (517)
374 3kta_B Chromosome segregation 96.8 0.0012 3.9E-08 58.5 5.1 61 125-231 62-126 (173)
375 2px0_A Flagellar biosynthesis 96.7 0.00035 1.2E-08 67.2 1.2 29 20-48 106-134 (296)
376 1y63_A LMAJ004144AAA protein; 96.7 0.00074 2.5E-08 59.7 3.0 32 8-42 2-33 (184)
377 2qor_A Guanylate kinase; phosp 96.6 0.00088 3E-08 60.2 3.0 29 12-43 8-36 (204)
378 1jjv_A Dephospho-COA kinase; P 96.6 0.001 3.5E-08 59.6 3.3 23 20-42 3-25 (206)
379 4ad8_A DNA repair protein RECN 96.6 0.00047 1.6E-08 71.4 1.2 34 3-40 48-81 (517)
380 3auy_A DNA double-strand break 96.5 0.0014 4.8E-08 64.8 4.1 32 5-40 15-46 (371)
381 3k1j_A LON protease, ATP-depen 96.5 0.00045 1.6E-08 72.9 0.4 41 5-48 49-89 (604)
382 1cke_A CK, MSSA, protein (cyti 96.5 0.0012 4E-08 59.9 2.8 30 20-49 6-38 (227)
383 2if2_A Dephospho-COA kinase; a 96.5 0.0011 3.7E-08 59.3 2.5 22 20-41 2-23 (204)
384 2pez_A Bifunctional 3'-phospho 96.4 0.0015 5.2E-08 57.1 3.0 26 20-45 6-31 (179)
385 2dr3_A UPF0273 protein PH0284; 96.3 0.0011 3.8E-08 60.6 1.4 34 4-40 10-44 (247)
386 4a1f_A DNAB helicase, replicat 96.2 0.0045 1.5E-07 60.6 5.5 32 6-40 36-67 (338)
387 3h2y_A GTPase family protein; 96.2 0.0094 3.2E-07 58.9 8.0 59 180-246 96-157 (368)
388 1in4_A RUVB, holliday junction 96.2 0.0017 5.7E-08 63.2 2.3 39 5-43 33-75 (334)
389 3m6a_A ATP-dependent protease 96.2 0.00052 1.8E-08 71.6 -1.4 40 6-49 99-138 (543)
390 2ffh_A Protein (FFH); SRP54, s 96.2 0.0015 5.1E-08 65.9 1.8 40 7-51 91-130 (425)
391 3t61_A Gluconokinase; PSI-biol 96.1 0.0025 8.4E-08 56.9 2.9 24 20-43 19-42 (202)
392 1odf_A YGR205W, hypothetical 3 96.0 0.003 1E-07 60.5 3.0 26 20-45 32-57 (290)
393 3vqt_A RF-3, peptide chain rel 96.0 0.023 8E-07 59.1 10.0 25 224-248 270-294 (548)
394 1ex7_A Guanylate kinase; subst 95.9 0.0034 1.2E-07 56.1 3.0 22 20-41 2-23 (186)
395 3kb2_A SPBC2 prophage-derived 95.9 0.0038 1.3E-07 53.6 3.2 23 20-42 2-24 (173)
396 3cm0_A Adenylate kinase; ATP-b 95.9 0.0036 1.2E-07 54.8 3.0 22 20-41 5-26 (186)
397 2ohf_A Protein OLA1, GTP-bindi 95.9 0.0039 1.3E-07 62.3 3.6 28 12-42 18-45 (396)
398 1sxj_E Activator 1 40 kDa subu 95.9 0.0023 7.9E-08 62.1 1.9 32 20-51 37-69 (354)
399 1j8m_F SRP54, signal recogniti 95.9 0.00097 3.3E-08 64.1 -0.9 39 9-51 92-130 (297)
400 3cnl_A YLQF, putative uncharac 95.9 0.0039 1.3E-07 58.7 3.3 26 21-46 101-126 (262)
401 2yvu_A Probable adenylyl-sulfa 95.9 0.0048 1.6E-07 54.2 3.6 34 13-49 10-43 (186)
402 3ec1_A YQEH GTPase; atnos1, at 95.9 0.015 5.2E-07 57.3 7.6 60 180-247 98-160 (369)
403 1np6_A Molybdopterin-guanine d 95.8 0.004 1.4E-07 55.0 2.7 24 20-43 7-30 (174)
404 1w1w_A Structural maintenance 95.8 0.0077 2.6E-07 60.6 5.1 59 130-231 334-396 (430)
405 3ice_A Transcription terminati 95.7 0.0027 9.3E-08 63.1 1.5 32 8-42 166-197 (422)
406 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0011 3.7E-08 65.2 -1.3 35 5-42 11-47 (359)
407 1qhx_A CPT, protein (chloramph 95.7 0.0062 2.1E-07 52.8 3.6 24 20-43 4-27 (178)
408 1m7g_A Adenylylsulfate kinase; 95.7 0.005 1.7E-07 55.4 3.1 33 13-48 22-54 (211)
409 3lw7_A Adenylate kinase relate 95.6 0.0062 2.1E-07 52.0 3.2 20 20-39 2-21 (179)
410 2rhm_A Putative kinase; P-loop 95.6 0.0062 2.1E-07 53.4 3.1 22 20-41 6-27 (193)
411 1kht_A Adenylate kinase; phosp 95.5 0.0073 2.5E-07 52.8 3.4 22 20-41 4-25 (192)
412 1sxj_C Activator 1 40 kDa subu 95.5 0.0013 4.3E-08 64.0 -1.7 39 5-46 33-73 (340)
413 3hr8_A Protein RECA; alpha and 95.5 0.004 1.4E-07 61.3 1.7 36 13-51 58-93 (356)
414 1ly1_A Polynucleotide kinase; 95.4 0.008 2.7E-07 51.9 3.3 22 20-41 3-24 (181)
415 2jaq_A Deoxyguanosine kinase; 95.4 0.0079 2.7E-07 53.1 3.3 21 21-41 2-22 (205)
416 1via_A Shikimate kinase; struc 95.4 0.0079 2.7E-07 52.3 2.9 22 20-41 5-26 (175)
417 1q3t_A Cytidylate kinase; nucl 95.3 0.0092 3.2E-07 54.7 3.5 22 20-41 17-38 (236)
418 2v54_A DTMP kinase, thymidylat 95.3 0.0093 3.2E-07 52.8 3.4 24 20-43 5-28 (204)
419 2ius_A DNA translocase FTSK; n 95.3 0.01 3.5E-07 61.2 4.1 40 8-50 159-200 (512)
420 3iij_A Coilin-interacting nucl 95.3 0.0077 2.6E-07 52.5 2.7 21 20-40 12-32 (180)
421 3trf_A Shikimate kinase, SK; a 95.3 0.01 3.5E-07 51.8 3.4 22 20-41 6-27 (185)
422 2ze6_A Isopentenyl transferase 95.3 0.0093 3.2E-07 55.6 3.3 23 20-42 2-24 (253)
423 4ag6_A VIRB4 ATPase, type IV s 95.2 0.0039 1.3E-07 61.9 0.6 32 20-51 36-67 (392)
424 2dhr_A FTSH; AAA+ protein, hex 95.2 0.0034 1.1E-07 64.7 0.2 35 5-44 55-89 (499)
425 1vht_A Dephospho-COA kinase; s 95.2 0.011 3.8E-07 53.2 3.6 22 20-41 5-26 (218)
426 1gtv_A TMK, thymidylate kinase 95.2 0.0047 1.6E-07 55.3 0.9 24 21-44 2-25 (214)
427 1gvn_B Zeta; postsegregational 95.2 0.01 3.5E-07 56.5 3.3 23 20-42 34-56 (287)
428 1lv7_A FTSH; alpha/beta domain 95.1 0.0097 3.3E-07 55.1 3.0 24 20-43 46-69 (257)
429 2plr_A DTMP kinase, probable t 95.1 0.012 4.2E-07 52.2 3.5 22 20-41 5-26 (213)
430 1nks_A Adenylate kinase; therm 95.1 0.011 3.6E-07 51.7 3.1 22 20-41 2-23 (194)
431 3j25_A Tetracycline resistance 95.1 0.01 3.5E-07 62.9 3.3 25 224-248 214-238 (638)
432 1nn5_A Similar to deoxythymidy 95.1 0.012 4.2E-07 52.4 3.4 26 13-41 6-31 (215)
433 2p5t_B PEZT; postsegregational 95.0 0.0082 2.8E-07 55.8 2.2 29 12-43 28-56 (253)
434 1xjc_A MOBB protein homolog; s 95.0 0.013 4.5E-07 51.5 3.3 24 20-43 5-28 (169)
435 1puj_A YLQF, conserved hypothe 95.0 0.023 7.8E-07 54.0 5.2 25 20-44 121-145 (282)
436 2c95_A Adenylate kinase 1; tra 95.0 0.014 4.7E-07 51.3 3.4 22 20-41 10-31 (196)
437 2wwf_A Thymidilate kinase, put 95.0 0.014 4.7E-07 52.0 3.4 22 20-41 11-32 (212)
438 1ypw_A Transitional endoplasmi 94.9 0.0072 2.5E-07 65.9 1.7 31 11-44 233-263 (806)
439 1tev_A UMP-CMP kinase; ploop, 94.9 0.015 5.1E-07 50.8 3.4 22 20-41 4-25 (196)
440 1uf9_A TT1252 protein; P-loop, 94.8 0.016 5.4E-07 51.2 3.4 23 20-42 9-31 (203)
441 2z0h_A DTMP kinase, thymidylat 94.6 0.018 6.2E-07 50.5 3.2 22 21-42 2-23 (197)
442 2vli_A Antibiotic resistance p 94.6 0.013 4.4E-07 50.9 2.2 22 20-41 6-27 (183)
443 3r20_A Cytidylate kinase; stru 94.6 0.018 6.3E-07 53.2 3.3 21 20-40 10-30 (233)
444 3fb4_A Adenylate kinase; psych 94.6 0.019 6.4E-07 51.5 3.2 20 21-40 2-21 (216)
445 1zd8_A GTP:AMP phosphotransfer 94.5 0.02 6.8E-07 52.0 3.3 22 20-41 8-29 (227)
446 1e6c_A Shikimate kinase; phosp 94.5 0.019 6.6E-07 49.3 3.0 22 20-41 3-24 (173)
447 1aky_A Adenylate kinase; ATP:A 94.4 0.023 7.8E-07 51.2 3.6 22 20-41 5-26 (220)
448 3cf0_A Transitional endoplasmi 94.4 0.02 6.8E-07 54.6 3.3 28 13-43 46-73 (301)
449 2bwj_A Adenylate kinase 5; pho 94.4 0.021 7.2E-07 50.2 3.2 22 20-41 13-34 (199)
450 3bos_A Putative DNA replicatio 94.4 0.023 7.9E-07 51.1 3.5 23 20-42 53-75 (242)
451 3dl0_A Adenylate kinase; phosp 94.4 0.021 7.3E-07 51.2 3.2 21 21-41 2-22 (216)
452 2zr9_A Protein RECA, recombina 94.4 0.022 7.5E-07 55.8 3.5 26 13-41 58-83 (349)
453 1jbk_A CLPB protein; beta barr 94.4 0.025 8.7E-07 48.6 3.6 22 20-41 44-65 (195)
454 1zak_A Adenylate kinase; ATP:A 94.3 0.02 7E-07 51.7 3.0 22 20-41 6-27 (222)
455 1ukz_A Uridylate kinase; trans 94.3 0.026 8.9E-07 50.0 3.5 22 20-41 16-37 (203)
456 3kl4_A SRP54, signal recogniti 94.3 0.011 3.8E-07 59.6 1.1 32 20-51 98-129 (433)
457 1qf9_A UMP/CMP kinase, protein 94.3 0.023 7.9E-07 49.5 3.1 22 20-41 7-28 (194)
458 3llm_A ATP-dependent RNA helic 94.3 0.018 6.1E-07 52.7 2.4 25 13-40 73-97 (235)
459 2pt5_A Shikimate kinase, SK; a 94.2 0.026 8.9E-07 48.3 3.3 21 21-41 2-22 (168)
460 2cdn_A Adenylate kinase; phosp 94.2 0.028 9.7E-07 49.8 3.6 22 20-41 21-42 (201)
461 2pbr_A DTMP kinase, thymidylat 94.2 0.025 8.6E-07 49.4 3.2 21 21-41 2-22 (195)
462 3auy_A DNA double-strand break 94.2 0.044 1.5E-06 53.9 5.3 58 130-231 281-345 (371)
463 1ko7_A HPR kinase/phosphatase; 94.2 0.036 1.2E-06 53.5 4.4 33 5-41 134-166 (314)
464 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.028 9.7E-07 52.3 3.5 22 20-41 5-26 (260)
465 3ake_A Cytidylate kinase; CMP 94.0 0.029 9.7E-07 49.7 3.2 22 20-41 3-24 (208)
466 2w58_A DNAI, primosome compone 94.0 0.03 1E-06 49.6 3.2 23 20-42 55-77 (202)
467 1zuh_A Shikimate kinase; alpha 94.0 0.032 1.1E-06 47.9 3.3 22 20-41 8-29 (168)
468 4fcw_A Chaperone protein CLPB; 93.9 0.019 6.6E-07 54.3 2.0 30 20-49 48-77 (311)
469 2xb4_A Adenylate kinase; ATP-b 93.9 0.032 1.1E-06 50.6 3.3 21 21-41 2-22 (223)
470 3tlx_A Adenylate kinase 2; str 93.9 0.035 1.2E-06 51.2 3.6 22 20-41 30-51 (243)
471 2r6a_A DNAB helicase, replicat 93.8 0.011 3.9E-07 59.9 0.2 37 4-43 191-227 (454)
472 2iyv_A Shikimate kinase, SK; t 93.8 0.03 1E-06 48.7 2.9 22 20-41 3-24 (184)
473 1e4v_A Adenylate kinase; trans 93.7 0.033 1.1E-06 50.0 3.1 21 21-41 2-22 (214)
474 2p65_A Hypothetical protein PF 93.7 0.03 1E-06 48.1 2.7 22 20-41 44-65 (187)
475 2qby_A CDC6 homolog 1, cell di 93.6 0.032 1.1E-06 53.9 3.1 24 20-43 46-69 (386)
476 3b9p_A CG5977-PA, isoform A; A 93.6 0.038 1.3E-06 52.0 3.5 24 20-43 55-78 (297)
477 3umf_A Adenylate kinase; rossm 93.6 0.037 1.3E-06 50.5 3.1 21 20-40 30-50 (217)
478 3be4_A Adenylate kinase; malar 93.4 0.043 1.5E-06 49.4 3.4 22 20-41 6-27 (217)
479 1fnn_A CDC6P, cell division co 93.4 0.043 1.5E-06 53.4 3.5 26 21-46 46-71 (389)
480 3h4m_A Proteasome-activating n 93.3 0.045 1.5E-06 51.1 3.3 24 20-43 52-75 (285)
481 1njg_A DNA polymerase III subu 93.2 0.046 1.6E-06 48.6 3.2 22 20-41 46-67 (250)
482 3v9p_A DTMP kinase, thymidylat 93.2 0.04 1.4E-06 50.6 2.8 27 13-42 22-48 (227)
483 2qmh_A HPR kinase/phosphorylas 93.2 0.079 2.7E-06 47.8 4.6 34 5-42 24-57 (205)
484 1ltq_A Polynucleotide kinase; 93.2 0.047 1.6E-06 51.5 3.3 22 20-41 3-24 (301)
485 1ak2_A Adenylate kinase isoenz 93.1 0.056 1.9E-06 49.3 3.6 22 20-41 17-38 (233)
486 2grj_A Dephospho-COA kinase; T 93.1 0.051 1.8E-06 48.5 3.2 22 20-41 13-34 (192)
487 1uj2_A Uridine-cytidine kinase 93.1 0.05 1.7E-06 50.3 3.2 22 20-41 23-44 (252)
488 1v5w_A DMC1, meiotic recombina 93.1 0.052 1.8E-06 52.9 3.5 26 13-41 119-144 (343)
489 4edh_A DTMP kinase, thymidylat 93.0 0.057 2E-06 49.0 3.5 26 14-42 4-29 (213)
490 2f6r_A COA synthase, bifunctio 92.9 0.053 1.8E-06 51.3 3.1 21 20-40 76-96 (281)
491 3n70_A Transport activator; si 92.8 0.06 2E-06 45.3 3.1 24 20-43 25-48 (145)
492 1l8q_A Chromosomal replication 92.8 0.053 1.8E-06 51.9 3.0 24 20-43 38-61 (324)
493 2qz4_A Paraplegin; AAA+, SPG7, 92.7 0.064 2.2E-06 49.2 3.4 23 20-42 40-62 (262)
494 3sr0_A Adenylate kinase; phosp 92.6 0.066 2.3E-06 48.3 3.2 20 21-40 2-21 (206)
495 4tmk_A Protein (thymidylate ki 92.6 0.07 2.4E-06 48.4 3.4 23 20-42 4-26 (213)
496 2z43_A DNA repair and recombin 92.5 0.07 2.4E-06 51.4 3.5 26 13-41 104-129 (324)
497 3exa_A TRNA delta(2)-isopenten 92.5 0.073 2.5E-06 51.4 3.5 22 20-41 4-25 (322)
498 3a8t_A Adenylate isopentenyltr 92.5 0.086 2.9E-06 51.4 4.0 24 20-43 41-64 (339)
499 3lv8_A DTMP kinase, thymidylat 92.4 0.072 2.4E-06 49.2 3.3 23 20-42 28-50 (236)
500 1sky_E F1-ATPase, F1-ATP synth 92.4 0.075 2.6E-06 54.1 3.7 29 11-42 146-174 (473)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.90 E-value=9.2e-24 Score=198.81 Aligned_cols=165 Identities=12% Similarity=0.116 Sum_probs=113.7
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcccc-----ceEEEEEecCcc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDH-----TRLGVWILDGEP 78 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~-----~~l~i~~l~g~~ 78 (415)
.+|+||||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++........ ..+++..+ ++
T Consensus 19 ~~L~~isl~i~~G---e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~~~~~~i~~v~Q--~~ 92 (235)
T 3tif_A 19 YALKNVNLNIKEG---EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY-IDNIKTNDLDDDELTKIRRDKIGFVFQ--QF 92 (235)
T ss_dssp EEEEEEEEEECTT---CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEECTTCCHHHHHHHHHHHEEEECT--TC
T ss_pred eeEEeeeEEEcCC---CEEEEECCCCCcHHHHHHHHhcCCCCCceEEE-ECCEEcccCCHHHHHHHhhccEEEEec--CC
Confidence 4899999999999 99999999999999999999999999999976 66666654333221 23555433 22
Q ss_pred cchhhhhhccCCCCCCchhhHHHHhc----C---C--ch-------hHHHHHHhHHHH-HHHHHhhhcCChhhHHHHHHH
Q psy13975 79 AHSNLLRFALNQETLPHTMVMLVVSM----T---T--PW-------NIIDELHNWASV-LQDHIDSLNIGAHDYQAGRCC 141 (415)
Q Consensus 79 ~~~~Ll~~~l~~~~~~~~~v~~~~d~----~---~--p~-------~~l~~l~~w~~~-l~~~~~~L~lSgGekQRl~LA 141 (415)
.+ +...++...+.+ . . .. .+++.++.. +. .++.+.+| |+|||||++||
T Consensus 93 ~l------------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~L--SgGq~QRv~iA 157 (235)
T 3tif_A 93 NL------------IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE-ERFANHKPNQL--SGGQQQRVAIA 157 (235)
T ss_dssp CC------------CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCC-GGGTTCCGGGS--CHHHHHHHHHH
T ss_pred cc------------CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCC-hhhhhCChhhC--CHHHHHHHHHH
Confidence 11 111111111110 0 0 01 112222221 11 13345555 99999999999
Q ss_pred HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh
Q psy13975 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF 221 (415)
Q Consensus 142 rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~ 221 (415)
||+..+|..+++|||+ .++|.+....+.+.+++++.+.
T Consensus 158 ral~~~p~llllDEPt------------------------------------------s~LD~~~~~~i~~~l~~l~~~~ 195 (235)
T 3tif_A 158 RALANNPPIILADQPT------------------------------------------WALDSKTGEKIMQLLKKLNEED 195 (235)
T ss_dssp HHHTTCCSEEEEESTT------------------------------------------TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHHc
Confidence 9999888888878764 4677788899999999999888
Q ss_pred CCeEEEeccC
Q psy13975 222 GAGLFYTSAK 231 (415)
Q Consensus 222 Gasli~tS~k 231 (415)
|.+++++||.
T Consensus 196 g~tvi~vtHd 205 (235)
T 3tif_A 196 GKTVVVVTHD 205 (235)
T ss_dssp CCEEEEECSC
T ss_pred CCEEEEEcCC
Confidence 9999999954
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.90 E-value=4.4e-23 Score=206.29 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=116.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+||||+|++| ++++|+||||||||||+++|+|+++|++|.+. +.+.++...... ...+++.++...
T Consensus 16 ~~~L~~vsl~i~~G---e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~-i~G~~~~~~~~~-~r~ig~VfQ~~~----- 85 (381)
T 3rlf_A 16 VVVSKDINLDIHEG---EFVVFVGPSGCGKSTLLRMIAGLETITSGDLF-IGEKRMNDTPPA-ERGVGMVFQSYA----- 85 (381)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTCCGG-GSCEEEECTTCC-----
T ss_pred EEEEeeeEEEECCC---CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE-ECCEECCCCCHH-HCCEEEEecCCc-----
Confidence 46899999999999 99999999999999999999999999999976 677776543322 234555533221
Q ss_pred hhhhccCCCCCCchhhHHHHhc----C-Cch--------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM----T-TPW--------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~----~-~p~--------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.+++.++..++.+ . .++ .+++.++. ...+++.+.+| |+|||||++|||||..+|.
T Consensus 86 ---------l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~p~~L--SGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 86 ---------LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-AHLLDRKPKAL--SGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp ---------CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTCCGGGS--CHHHHHHHHHHHHHHHCCS
T ss_pred ---------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCChhHC--CHHHHHHHHHHHHHHcCCC
Confidence 1222233222211 1 111 12222222 12334445555 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||++ ++|......++..|++++.+.|.+++|+|
T Consensus 154 lLLLDEPts------------------------------------------~LD~~~~~~l~~~l~~l~~~~g~tii~vT 191 (381)
T 3rlf_A 154 VFLLDEPLS------------------------------------------NLDAALRVQMRIEISRLHKRLGRTMIYVT 191 (381)
T ss_dssp EEEEESTTT------------------------------------------TSCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred EEEEECCCc------------------------------------------CCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 888888643 56677788899999999988999999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 192 Hd 193 (381)
T 3rlf_A 192 HD 193 (381)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.89 E-value=3.7e-23 Score=205.63 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=119.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----cceEEEEEecCccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----HTRLGVWILDGEPA 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~~~l~i~~l~g~~~ 79 (415)
.+|+||||+|++| ++++|+|+||||||||+++|+|+++|++|.+. +.+.++....... +.++++.++. +.
T Consensus 42 ~aL~~vsl~i~~G---ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~-i~G~~i~~~~~~~~~~~r~~Ig~v~Q~--~~ 115 (366)
T 3tui_C 42 QALNNVSLHVPAG---QIYGVIGASGAGKSTLIRCVNLLERPTEGSVL-VDGQELTTLSESELTKARRQIGMIFQH--FN 115 (366)
T ss_dssp EEEEEEEEEECTT---CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECSSCCHHHHHHHHTTEEEECSS--CC
T ss_pred EEEEeeEEEEcCC---CEEEEEcCCCchHHHHHHHHhcCCCCCceEEE-ECCEECCcCCHHHHHHHhCcEEEEeCC--Cc
Confidence 4899999999999 99999999999999999999999999999977 6777765543221 2345555332 21
Q ss_pred chhhhhhccCCCCCCchhhHHHHh----cC-Cc--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVS----MT-TP--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d----~~-~p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~ 146 (415)
+ +...++...+. +. .+ ..+++.++.. +..++.+.+| |||||||++|||||..
T Consensus 116 ---l---------~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~L--SGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 116 ---L---------LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNL--SGGQKQRVAIARALAS 180 (366)
T ss_dssp ---C---------CTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTS--CHHHHHHHHHHHHTTT
T ss_pred ---c---------CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhC--CHHHHHHHHHHHHHhc
Confidence 1 11112211111 11 11 1122222221 2233444444 9999999999999998
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
+|..+++|||+ .++|.+....|++.|++++.+.|.+++
T Consensus 181 ~P~lLLlDEPT------------------------------------------s~LD~~~~~~i~~lL~~l~~~~g~Tii 218 (366)
T 3tui_C 181 NPKVLLCDQAT------------------------------------------SALDPATTRSILELLKDINRRLGLTIL 218 (366)
T ss_dssp CCSEEEEESTT------------------------------------------TTSCHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred CCCEEEEECCC------------------------------------------ccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 88888888764 467778889999999999988999999
Q ss_pred EeccCCcccHHHHHHH
Q psy13975 227 YTSAKEDKNCDLLYKY 242 (415)
Q Consensus 227 ~tS~k~~~n~~~l~~~ 242 (415)
++| ++++.+.++
T Consensus 219 ~vT----Hdl~~~~~~ 230 (366)
T 3tui_C 219 LIT----HEMDVVKRI 230 (366)
T ss_dssp EEE----SCHHHHHHH
T ss_pred EEe----cCHHHHHHh
Confidence 999 555555443
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.89 E-value=5.7e-23 Score=204.10 Aligned_cols=172 Identities=17% Similarity=0.178 Sum_probs=119.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCC---ccccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEY---REDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~---~~~~~~l~i~~l~g~~~ 79 (415)
+.+|+||||+|++| ++++|+||||||||||+++|+|+++|++|.+. +.+.++.... .....++++.++... .
T Consensus 17 ~~~L~~vsl~i~~G---e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~-i~G~~i~~~~~~~~~~~r~ig~vfQ~~~-l 91 (359)
T 3fvq_A 17 TPVLNDISLSLDPG---EILFIIGASGCGKTTLLRCLAGFEQPDSGEIS-LSGKTIFSKNTNLPVRERRLGYLVQEGV-L 91 (359)
T ss_dssp EEEEEEEEEEECTT---CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE-ETTEEEESSSCBCCGGGSCCEEECTTCC-C
T ss_pred EEEEEeeEEEEcCC---CEEEEECCCCchHHHHHHHHhcCCCCCCcEEE-ECCEECcccccccchhhCCEEEEeCCCc-C
Confidence 46899999999999 99999999999999999999999999999976 6666652211 112334555543321 1
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcCC-------------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMTT-------------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~~-------------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~ 146 (415)
+++.++..++.+.. ...+++.++.. ..+++.+.+| |||||||++|||||..
T Consensus 92 -------------~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~L--SGGq~QRValArAL~~ 155 (359)
T 3fvq_A 92 -------------FPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHEL--SGGQQQRAALARALAP 155 (359)
T ss_dssp -------------CTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGS--CHHHHHHHHHHHHHTT
T ss_pred -------------CCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhC--CHHHHHHHHHHHHHHc
Confidence 22223322222110 11223333331 3344555555 9999999999999998
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
+|..+++|||++ ++|......++..++++..+.|.+++
T Consensus 156 ~P~lLLLDEPts------------------------------------------~LD~~~r~~l~~~l~~~~~~~g~tvi 193 (359)
T 3fvq_A 156 DPELILLDEPFS------------------------------------------ALDEQLRRQIREDMIAALRANGKSAV 193 (359)
T ss_dssp CCSEEEEESTTT------------------------------------------TSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEeCCcc------------------------------------------cCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 888888888643 56667788888888888888899999
Q ss_pred EeccCCcccHHHHHH
Q psy13975 227 YTSAKEDKNCDLLYK 241 (415)
Q Consensus 227 ~tS~k~~~n~~~l~~ 241 (415)
|+|| +.+++..
T Consensus 194 ~vTH----d~~ea~~ 204 (359)
T 3fvq_A 194 FVSH----DREEALQ 204 (359)
T ss_dssp EECC----CHHHHHH
T ss_pred EEeC----CHHHHHH
Confidence 9994 4444444
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.89 E-value=3e-23 Score=198.77 Aligned_cols=173 Identities=17% Similarity=0.116 Sum_probs=118.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+||||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... ...+++..+....
T Consensus 24 ~~vL~~vsl~i~~G---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~~i~~v~q~~~~--- 96 (266)
T 4g1u_C 24 QALINDVSLHIASG---EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH-LLGQNLNSWQPKALARTRAVMRQYSEL--- 96 (266)
T ss_dssp EEEEEEEEEEEETT---CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEE-ETTEETTTSCHHHHHHHEEEECSCCCC---
T ss_pred eeEEEeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-ECCEECCcCCHHHHhheEEEEecCCcc---
Confidence 46899999999999 99999999999999999999999999999976 6777765443322 2234443222111
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC-----C------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc----
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT-----T------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF---- 146 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~-----~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~---- 146 (415)
+...++...+.+. . ...+++.++.. ...++.+.+| |+|||||++||||+..
T Consensus 97 -----------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgGq~QRv~iAraL~~~~~~ 162 (266)
T 4g1u_C 97 -----------AFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVL--SGGEQQRVQLARVLAQLWQP 162 (266)
T ss_dssp -----------CSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGC--CHHHHHHHHHHHHHHHTCCS
T ss_pred -----------CCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccC--CHHHHHHHHHHHHHhccccc
Confidence 1111222111111 0 01122222221 2233444555 9999999999999997
Q ss_pred --ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 147 --ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 147 --~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
+|..+++||| +.++|.+....+.+.|++++.+.|.+
T Consensus 163 ~~~p~lLllDEP------------------------------------------ts~LD~~~~~~i~~~l~~l~~~~~~t 200 (266)
T 4g1u_C 163 QPTPRWLFLDEP------------------------------------------TSALDLYHQQHTLRLLRQLTRQEPLA 200 (266)
T ss_dssp SCCCEEEEECCC------------------------------------------CSSCCHHHHHHHHHHHHHHHHHSSEE
T ss_pred CCCCCEEEEeCc------------------------------------------cccCCHHHHHHHHHHHHHHHHcCCCE
Confidence 7777777765 45777888999999999999887889
Q ss_pred EEEeccCCcccHHHHHHH
Q psy13975 225 LFYTSAKEDKNCDLLYKY 242 (415)
Q Consensus 225 li~tS~k~~~n~~~l~~~ 242 (415)
++++| ++++.+..+
T Consensus 201 vi~vt----Hdl~~~~~~ 214 (266)
T 4g1u_C 201 VCCVL----HDLNLAALY 214 (266)
T ss_dssp EEEEC----SCHHHHHHH
T ss_pred EEEEE----cCHHHHHHh
Confidence 99999 556555554
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=2.1e-22 Score=199.96 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=115.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|++| ++++|+|+|||||||||++|+|+++|++|.+. +.+.++.... ....++++.++... .
T Consensus 28 ~~vl~~vsl~i~~G---e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~-~~~r~ig~v~Q~~~-l--- 98 (355)
T 1z47_A 28 ARSVRGVSFQIREG---EMVGLLGPSGSGKTTILRLIAGLERPTKGDVW-IGGKRVTDLP-PQKRNVGLVFQNYA-L--- 98 (355)
T ss_dssp TTCEEEEEEEEETT---CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTCC-GGGSSEEEECGGGC-C---
T ss_pred CEEEeeeEEEECCC---CEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-ECCEECCcCC-hhhCcEEEEecCcc-c---
Confidence 46899999999999 99999999999999999999999999999976 6666664322 12334555433211 1
Q ss_pred hhhhccCCCCCCchhhHHHHhc----CC-c--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM----TT-P--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~----~~-p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
+++.++...+.+ .. + ..+++.++. ...+++.+.+| |+|||||++||||+..+|.
T Consensus 99 ----------~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~r~~~~L--SGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 99 ----------FQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL-ESYANRFPHEL--SGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp ----------CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGS--CHHHHHHHHHHHHHTTCCS
T ss_pred ----------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhHhcCCcccC--CHHHHHHHHHHHHHHcCCC
Confidence 222222222111 10 1 112222222 12234445555 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|......+++.|++++.+.|.+++|+|
T Consensus 166 lLLLDEP~------------------------------------------s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 203 (355)
T 1z47_A 166 VLLFDEPF------------------------------------------AAIDTQIRRELRTFVRQVHDEMGVTSVFVT 203 (355)
T ss_dssp EEEEESTT------------------------------------------CCSSHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred EEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 88888764 466777888999999999988899999999
Q ss_pred c
Q psy13975 230 A 230 (415)
Q Consensus 230 ~ 230 (415)
|
T Consensus 204 H 204 (355)
T 1z47_A 204 H 204 (355)
T ss_dssp S
T ss_pred C
Confidence 5
No 7
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.88 E-value=2.4e-22 Score=199.91 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=116.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|++| ++++|+|||||||||||++|+|+++|++|.+. +.+.++..... ...++++.++... .
T Consensus 16 ~~vl~~vsl~i~~G---e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~~-~~r~ig~v~Q~~~-l--- 86 (359)
T 2yyz_A 16 VKAVDGVSFEVKDG---EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY-FDDVLVNDIPP-KYREVGMVFQNYA-L--- 86 (359)
T ss_dssp EEEEEEEEEEECTT---CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCG-GGTTEEEECSSCC-C---
T ss_pred EEEEeeeEEEEcCC---CEEEEEcCCCchHHHHHHHHHCCCCCCccEEE-ECCEECCCCCh-hhCcEEEEecCcc-c---
Confidence 35899999999999 99999999999999999999999999999976 66666644322 2334555533221 1
Q ss_pred hhhhccCCCCCCchhhHHHHhcC----C---------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT----T---------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~----~---------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
+++.++...+.+. . ...+++.++.. +.+++.+.+| |+|||||++||||+..+|.
T Consensus 87 ----------~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~L--SgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 87 ----------YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQL--SGGQQQRVALARALVKQPK 153 (359)
T ss_dssp ----------CTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGS--CHHHHHHHHHHHHHTTCCS
T ss_pred ----------CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhC--CHHHHHHHHHHHHHHcCCC
Confidence 1222222222111 0 11233333331 3344555555 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|...+..+++.|++++.+.|.+++|+|
T Consensus 154 lLLLDEP~------------------------------------------s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 191 (359)
T 2yyz_A 154 VLLFDEPL------------------------------------------SNLDANLRMIMRAEIKHLQQELGITSVYVT 191 (359)
T ss_dssp EEEEESTT------------------------------------------TTSCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred EEEEECCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 88888764 366777888899999999888899999999
Q ss_pred c
Q psy13975 230 A 230 (415)
Q Consensus 230 ~ 230 (415)
|
T Consensus 192 H 192 (359)
T 2yyz_A 192 H 192 (359)
T ss_dssp S
T ss_pred C
Confidence 6
No 8
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=1.4e-22 Score=191.22 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=110.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc--cceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED--HTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~~ 80 (415)
+++|+++||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... +.++++. .+.+.+
T Consensus 19 ~~vl~~vsl~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~v--~q~~~l 92 (240)
T 1ji0_A 19 IHAIKGIDLKVPRG---QIVTLIGANGAGKTTTLSAIAGLVRAQKGKII-FNGQDITNKPAHVINRMGIALV--PEGRRI 92 (240)
T ss_dssp EEEEEEEEEEEETT---CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEECTTCCHHHHHHTTEEEE--CSSCCC
T ss_pred eeEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEECCCCCHHHHHhCCEEEE--ecCCcc
Confidence 35899999999999 99999999999999999999999999999976 6666654332221 1224544 332211
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcC-----Cch-------hHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMT-----TPW-------NIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~-----~p~-------~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
+...++...+.+. ... .+++.+. . ...+++.+..| |+|||||++||||+..+
T Consensus 93 ------------~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~L--SgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 93 ------------FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTL--SGGEQQMLAIGRALMSR 157 (240)
T ss_dssp ------------CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSS--CHHHHHHHHHHHHHTTC
T ss_pred ------------CCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccH-hhHhcCChhhC--CHHHHHHHHHHHHHHcC
Confidence 1111111111110 000 1122221 2 12223333344 99999999999999988
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
|..+++|||+ .++|.+..+.+.+.|++++. .|.++++
T Consensus 158 p~lllLDEPt------------------------------------------s~LD~~~~~~l~~~l~~~~~-~g~tvi~ 194 (240)
T 1ji0_A 158 PKLLMMDEPS------------------------------------------LGLAPILVSEVFEVIQKINQ-EGTTILL 194 (240)
T ss_dssp CSEEEEECTT------------------------------------------TTCCHHHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCEEEEcCCc------------------------------------------ccCCHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 8887878764 46777888999999999975 6999999
Q ss_pred eccC
Q psy13975 228 TSAK 231 (415)
Q Consensus 228 tS~k 231 (415)
+||.
T Consensus 195 vtHd 198 (240)
T 1ji0_A 195 VEQN 198 (240)
T ss_dssp EESC
T ss_pred EecC
Confidence 9943
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.88 E-value=6.9e-23 Score=195.91 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=111.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecC--CCCc-cccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVS--DEYR-EDHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~--~~~~-~~~~~l~i~~l~g~~~ 79 (415)
+.+|+||||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++. .... ..+.++++..+... .
T Consensus 37 ~~vL~~vsl~i~~G---ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~-~~g~~i~~~~~~~~~~~~~i~~v~Q~~~-l 111 (263)
T 2olj_A 37 LEVLKGINVHIREG---EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII-IDGINLKAKDTNLNKVREEVGMVFQRFN-L 111 (263)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-ETTEESSSTTCCHHHHHHHEEEECSSCC-C
T ss_pred EEEEEeeEEEEcCC---CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE-ECCEECCCccccHHHHhCcEEEEeCCCc-C
Confidence 35899999999999 99999999999999999999999999999976 6666653 1111 11233555432211 1
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcCC-c--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMTT-P--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~~-p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
+..+ ...+...+....+.. + ..+++.++.+ +.+++.+.+| |+|||||++||||+..+|..
T Consensus 112 ~~~~--------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~L--SgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 112 FPHM--------TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSL--SGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp CTTS--------CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGS--CHHHHHHHHHHHHHTTCCSE
T ss_pred CCCC--------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhC--CHHHHHHHHHHHHHHCCCCE
Confidence 1111 111111000001111 0 1122222221 2233444445 99999999999999988888
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++|||+ .++|.+....+.+.|++++.+ |.+++++||
T Consensus 181 llLDEPt------------------------------------------s~LD~~~~~~~~~~l~~l~~~-g~tvi~vtH 217 (263)
T 2olj_A 181 MLFDEPT------------------------------------------SALDPEMVGEVLSVMKQLANE-GMTMVVVTH 217 (263)
T ss_dssp EEEESTT------------------------------------------TTSCHHHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred EEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHHhC-CCEEEEEcC
Confidence 7778764 467778889999999999766 999999994
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.88 E-value=7.3e-23 Score=196.94 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=112.4
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc---cccceEEEEEecCcccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR---EDHTRLGVWILDGEPAH 80 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~---~~~~~l~i~~l~g~~~~ 80 (415)
.+|+||||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++..... ..+.++++. .+.+..
T Consensus 22 ~~L~~isl~i~~G---e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~-~~G~~i~~~~~~~~~~~~~ig~v--~Q~~~~ 95 (275)
T 3gfo_A 22 HALKGINMNIKRG---EVTAILGGNGVGKSTLFQNFNGILKPSSGRIL-FDNKPIDYSRKGIMKLRESIGIV--FQDPDN 95 (275)
T ss_dssp EEEEEEEEEEETT---SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-ETTEECCCSHHHHHHHHHSEEEE--CSSGGG
T ss_pred eEEEeeEEEEcCC---CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE-ECCEECCcccccHHHHhCcEEEE--EcCccc
Confidence 4899999999999 99999999999999999999999999999976 66666531111 112345544 332210
Q ss_pred hhhhhhccCCCCCCchhhHHHHh-----cCCch--------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVS-----MTTPW--------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d-----~~~p~--------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
.+...++...+. ...+. .+++.++.. ...++.+..| |+|||||++|||||..+
T Consensus 96 -----------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~L--SgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 96 -----------QLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCL--SFGQKKRVAIAGVLVME 161 (275)
T ss_dssp -----------TCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGS--CHHHHHHHHHHHHHTTC
T ss_pred -----------ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccC--CHHHHHHHHHHHHHHcC
Confidence 001111211111 01111 122222221 2233444444 99999999999999988
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
|..+++|||+ .++|......+.+.|++++.+.|.++++
T Consensus 162 P~lLlLDEPt------------------------------------------s~LD~~~~~~i~~~l~~l~~~~g~tvi~ 199 (275)
T 3gfo_A 162 PKVLILDEPT------------------------------------------AGLDPMGVSEIMKLLVEMQKELGITIII 199 (275)
T ss_dssp CSEEEEECTT------------------------------------------TTCCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEECcc------------------------------------------ccCCHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 8888888764 4677788899999999998555999999
Q ss_pred eccCC
Q psy13975 228 TSAKE 232 (415)
Q Consensus 228 tS~k~ 232 (415)
+||..
T Consensus 200 vtHdl 204 (275)
T 3gfo_A 200 ATHDI 204 (275)
T ss_dssp EESCC
T ss_pred EecCH
Confidence 99653
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.88 E-value=2.6e-22 Score=199.95 Aligned_cols=165 Identities=19% Similarity=0.204 Sum_probs=115.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+|+||+|++| ++++|+|+|||||||||++|+|+++|++|.+. +.+.++..... ...++++.++...
T Consensus 16 ~~vl~~vsl~i~~G---e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~~-~~r~ig~v~Q~~~----- 85 (362)
T 2it1_A 16 FTALNNINLKIKDG---EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY-FDEKDVTELPP-KDRNVGLVFQNWA----- 85 (362)
T ss_dssp SEEEEEEEEEECTT---CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCG-GGTTEEEECTTCC-----
T ss_pred EEEEEeeEEEECCC---CEEEEECCCCchHHHHHHHHhcCCCCCceEEE-ECCEECCcCCH-hHCcEEEEecCcc-----
Confidence 45899999999999 99999999999999999999999999999976 66666644322 2234555433211
Q ss_pred hhhhccCCCCCCchhhHHHHhc----CC-c--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM----TT-P--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~----~~-p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.+++.++...+.+ .. + ..+++.++. .+.+++.+.+| |+|||||++||||+..+|.
T Consensus 86 ---------l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~L--SGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 86 ---------LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI-DKLLNRYPWQL--SGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp ---------CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-TTCTTCCGGGS--CHHHHHHHHHHHHHTTCCS
T ss_pred ---------cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chHhhCChhhC--CHHHHHHHHHHHHHHcCCC
Confidence 1222223222211 10 1 011222222 12223344444 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|......+.+.|++++.++|.+++|+|
T Consensus 154 lLLLDEP~------------------------------------------s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 191 (362)
T 2it1_A 154 VLLLDEPL------------------------------------------SNLDALLRLEVRAELKRLQKELGITTVYVT 191 (362)
T ss_dssp EEEEESGG------------------------------------------GGSCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEECcc------------------------------------------ccCCHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 88888764 466777888899999999888899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 192 Hd 193 (362)
T 2it1_A 192 HD 193 (362)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.88 E-value=3.6e-23 Score=197.28 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=113.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~ 81 (415)
+++|+||||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.........+..+.++.+.+ .+.
T Consensus 20 ~~vl~~vsl~i~~G---e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 95 (257)
T 1g6h_A 20 FKALDGVSISVNKG---DVTLIIGPNGSGKSTLINVITGFLKADEGRVY-FENKDITNKEPAELYHYGIVRTFQTPQPLK 95 (257)
T ss_dssp EEEEEEECCEEETT---CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred EeeEeeeEEEEeCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCHHHHHhCCEEEEccCCccCC
Confidence 35899999999999 99999999999999999999999999999976 66666543221111122233344332 121
Q ss_pred hh--hhhc-cCCCC-CCchhhHHHHh----cCC------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 82 NL--LRFA-LNQET-LPHTMVMLVVS----MTT------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 82 ~L--l~~~-l~~~~-~~~~~v~~~~d----~~~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
.+ ..+. +.... ...... ..+. ... ...+++.++.+ ..+++.+..| |+|||||++||||+..+
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgGqkQrv~iAraL~~~ 171 (257)
T 1g6h_A 96 EMTVLENLLIGEICPGESPLN-SLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGEL--SGGQMKLVEIGRALMTN 171 (257)
T ss_dssp GSBHHHHHHGGGTSTTSCHHH-HHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGS--CHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHhhhccCccc-ccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhC--CHHHHHHHHHHHHHHcC
Confidence 11 1111 00000 000000 0000 000 01122333221 2233444445 99999999999999988
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
|..+++|||+ .++|.+..+.+.+.|++++.+ |.++++
T Consensus 172 p~lllLDEPt------------------------------------------s~LD~~~~~~l~~~l~~l~~~-g~tvi~ 208 (257)
T 1g6h_A 172 PKMIVMDEPI------------------------------------------AGVAPGLAHDIFNHVLELKAK-GITFLI 208 (257)
T ss_dssp CSEEEEESTT------------------------------------------TTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEeCCc------------------------------------------cCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 8887878764 467778899999999999765 999999
Q ss_pred eccCC
Q psy13975 228 TSAKE 232 (415)
Q Consensus 228 tS~k~ 232 (415)
+||..
T Consensus 209 vtHd~ 213 (257)
T 1g6h_A 209 IEHRL 213 (257)
T ss_dssp ECSCC
T ss_pred EecCH
Confidence 99653
No 13
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.88 E-value=9.9e-23 Score=190.39 Aligned_cols=165 Identities=17% Similarity=0.123 Sum_probs=111.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc----c-ceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED----H-TRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~----~-~~l~i~~l~g~ 77 (415)
+.+|+|+||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... + .++++. .+.
T Consensus 17 ~~~l~~vsl~i~~G---e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~v--~q~ 90 (224)
T 2pcj_A 17 YEILKGISLSVKKG---EFVSIIGASGSGKSTLLYILGLLDAPTEGKVF-LEGKEVDYTNEKELSLLRNRKLGFV--FQF 90 (224)
T ss_dssp EEEEEEEEEEEETT---CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEE-ETTEECCSSCHHHHHHHHHHHEEEE--CSS
T ss_pred EeeEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEECCCCCHHHHHHHHhCcEEEE--ecC
Confidence 35899999999999 99999999999999999999999999999976 6666654322211 1 234444 332
Q ss_pred ccchhhhhhccCCCCCCchhhHHHHh----cCC-c--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 78 PAHSNLLRFALNQETLPHTMVMLVVS----MTT-P--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~~~d----~~~-p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
+.+ +...++...+. ... + ..+++.++.+ +.+++.+.+| |+|||||++||||+
T Consensus 91 ~~l------------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgGq~qrv~laral 155 (224)
T 2pcj_A 91 HYL------------IPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYEL--SGGEQQRVAIARAL 155 (224)
T ss_dssp CCC------------CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGS--CHHHHHHHHHHHHT
T ss_pred ccc------------CCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhC--CHHHHHHHHHHHHH
Confidence 211 11111211111 000 0 1122222221 2223334444 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..+|..+++|||+ .++|.+....+.+.|++++.+ |.+
T Consensus 156 ~~~p~lllLDEPt------------------------------------------~~LD~~~~~~~~~~l~~l~~~-g~t 192 (224)
T 2pcj_A 156 ANEPILLFADEPT------------------------------------------GNLDSANTKRVMDIFLKINEG-GTS 192 (224)
T ss_dssp TTCCSEEEEESTT------------------------------------------TTCCHHHHHHHHHHHHHHHHT-TCE
T ss_pred HcCCCEEEEeCCC------------------------------------------CCCCHHHHHHHHHHHHHHHHC-CCE
Confidence 9888877777763 467778889999999999876 999
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 193 vi~vtHd 199 (224)
T 2pcj_A 193 IVMVTHE 199 (224)
T ss_dssp EEEECSC
T ss_pred EEEEcCC
Confidence 9999954
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=2.1e-22 Score=200.26 Aligned_cols=163 Identities=15% Similarity=0.190 Sum_probs=114.4
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCC----CccccceEEEEEecCcccc
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDE----YREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~----~~~~~~~l~i~~l~g~~~~ 80 (415)
+|+|+||+|++| ++++|+|+|||||||||++|+|+++|++|.+. +.+.++... ......++++.++... .
T Consensus 20 vl~~vsl~i~~G---e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~-l- 93 (353)
T 1oxx_K 20 ALDNVNINIENG---ERFGILGPSGAGKTTFMRIIAGLDVPSTGELY-FDDRLVASNGKLIVPPEDRKIGMVFQTWA-L- 93 (353)
T ss_dssp EEEEEEEEECTT---CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE-ETTEEEEETTEESSCGGGSCEEEEETTSC-C-
T ss_pred eEeceEEEECCC---CEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-ECCEECcccccccCChhhCCEEEEeCCCc-c-
Confidence 899999999999 99999999999999999999999999999976 666555321 1112345665544321 1
Q ss_pred hhhhhhccCCCCCCchhhHHHHhcC----C-c--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcc
Q psy13975 81 SNLLRFALNQETLPHTMVMLVVSMT----T-P--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFA 147 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~d~~----~-p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~ 147 (415)
+++.++...+.+. . + ..+++.++.. +.+++.+.+| |+|||||++||||+..+
T Consensus 94 ------------~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~L--SGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 94 ------------YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPREL--SGAQQQRVALARALVKD 158 (353)
T ss_dssp ------------CTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGS--CHHHHHHHHHHHHHTTC
T ss_pred ------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhC--CHHHHHHHHHHHHHHhC
Confidence 2222222221111 0 0 1122333321 2334445555 99999999999999988
Q ss_pred cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 148 RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 148 ~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
|..+++|||+ .++|......+.+.|++++.+.|.+++|
T Consensus 159 P~lLLLDEP~------------------------------------------s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 196 (353)
T 1oxx_K 159 PSLLLLDEPF------------------------------------------SNLDARMRDSARALVKEVQSRLGVTLLV 196 (353)
T ss_dssp CSEEEEESTT------------------------------------------TTSCGGGHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEECCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8888888764 3566777888999999998888999999
Q ss_pred ecc
Q psy13975 228 TSA 230 (415)
Q Consensus 228 tS~ 230 (415)
+||
T Consensus 197 vTH 199 (353)
T 1oxx_K 197 VSH 199 (353)
T ss_dssp EES
T ss_pred EeC
Confidence 995
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=3.1e-22 Score=200.10 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=115.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|++| ++++|+|+|||||||||++|+|+++|++|.+. +.+.++..... ...++++.++... .
T Consensus 24 ~~vl~~vsl~i~~G---e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~~-~~r~ig~v~Q~~~-l--- 94 (372)
T 1v43_A 24 FTAVNKLNLTIKDG---EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-FGDRDVTYLPP-KDRNISMVFQSYA-V--- 94 (372)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCG-GGGTEEEEEC--------
T ss_pred EEEEeeeEEEECCC---CEEEEECCCCChHHHHHHHHHcCCCCCceEEE-ECCEECCCCCh-hhCcEEEEecCcc-c---
Confidence 35899999999999 99999999999999999999999999999976 66666644322 2345666544321 1
Q ss_pred hhhhccCCCCCCchhhHHHHhcCC-------------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTT-------------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~-------------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
+++.++...+.+.. ...+++.++.. +.+++.+.+| |+|||||++|||||..+|.
T Consensus 95 ----------~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~L--SGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 95 ----------WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQL--SGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp ------------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTC--CSSCHHHHHHHHHHTTCCS
T ss_pred ----------CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhC--CHHHHHHHHHHHHHhcCCC
Confidence 12222222222110 01223333321 2334445555 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|......+++.|++++.+.|.+++|+|
T Consensus 162 lLLLDEP~------------------------------------------s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 199 (372)
T 1v43_A 162 VLLMDEPL------------------------------------------SNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199 (372)
T ss_dssp EEEEESTT------------------------------------------TTSCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEcCCC------------------------------------------ccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 88888764 366777888899999999888899999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 200 Hd 201 (372)
T 1v43_A 200 HD 201 (372)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=7.2e-23 Score=195.08 Aligned_cols=165 Identities=14% Similarity=0.077 Sum_probs=110.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.......+.++++. .+.+.+
T Consensus 28 ~~vl~~vsl~i~~G---ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~i~~v--~q~~~l-- 99 (256)
T 1vpl_A 28 KEILKGISFEIEEG---EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT-VFGKNVVEEPHEVRKLISYL--PEEAGA-- 99 (256)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-ETTEETTTCHHHHHTTEEEE--CTTCCC--
T ss_pred EEEEEeeEEEEcCC---cEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEECCccHHHHhhcEEEE--cCCCCC--
Confidence 35899999999999 99999999999999999999999999999976 56655543111112334444 332211
Q ss_pred hhhhccCCCCCCchhhHHHHhc-----CCc--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM-----TTP--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~-----~~p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
+...++...+.+ ... ..+++.++.. +.+++.+..| |+|||||++||||+..+|.
T Consensus 100 ----------~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~L--SgGq~qRv~lAraL~~~p~ 166 (256)
T 1vpl_A 100 ----------YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTY--SKGMVRKLLIARALMVNPR 166 (256)
T ss_dssp ----------CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGC--CHHHHHHHHHHHHHTTCCS
T ss_pred ----------CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhC--CHHHHHHHHHHHHHHcCCC
Confidence 111122111111 101 0122222221 2223334444 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|.+....+.+.|++++. .|.+++++|
T Consensus 167 lllLDEPt------------------------------------------s~LD~~~~~~l~~~l~~l~~-~g~tiiivt 203 (256)
T 1vpl_A 167 LAILDEPT------------------------------------------SGLDVLNAREVRKILKQASQ-EGLTILVSS 203 (256)
T ss_dssp EEEEESTT------------------------------------------TTCCHHHHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred EEEEeCCc------------------------------------------cccCHHHHHHHHHHHHHHHh-CCCEEEEEc
Confidence 87878764 46777888999999999875 599999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 204 Hd 205 (256)
T 1vpl_A 204 HN 205 (256)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.88 E-value=8.6e-23 Score=195.24 Aligned_cols=176 Identities=13% Similarity=0.086 Sum_probs=116.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCC----------CCc----cccce
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSD----------EYR----EDHTR 68 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~----------~~~----~~~~~ 68 (415)
+++|+||||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++.. ... ..+.+
T Consensus 19 ~~vl~~vsl~i~~G---e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T 1b0u_A 19 HEVLKGVSLQARAG---DVISIIGSSGSGKSTFLRCINFLEKPSEGAII-VNGQNINLVRDKDGQLKVADKNQLRLLRTR 94 (262)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-ETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred EEEEEeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEEccccccccccccccChhhHHHHhcc
Confidence 35899999999999 99999999999999999999999999999976 66655531 111 11223
Q ss_pred EEEEEecCcccchhhhhhccCCCCCCchhhHHHHhcCC---------chhHHHHHHhHHHH-HHHHHhhhcCChhhHHHH
Q psy13975 69 LGVWILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTT---------PWNIIDELHNWASV-LQDHIDSLNIGAHDYQAG 138 (415)
Q Consensus 69 l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~---------p~~~l~~l~~w~~~-l~~~~~~L~lSgGekQRl 138 (415)
+++..+.. ..+..+ +..+...+....+.. ...+++.++.. +. +++.+..| |+|||||+
T Consensus 95 i~~v~Q~~-~l~~~l--------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~L--SgGq~qRv 162 (262)
T 1b0u_A 95 LTMVFQHF-NLWSHM--------TVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHL--SGGQQQRV 162 (262)
T ss_dssp EEEECSSC-CCCTTS--------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGS--CHHHHHHH
T ss_pred eEEEecCc-ccCCCC--------cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccC--CHHHHHHH
Confidence 45443221 111111 111100000000100 11233444432 33 45556666 99999999
Q ss_pred HHHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHH
Q psy13975 139 RCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFC 218 (415)
Q Consensus 139 ~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~ 218 (415)
+||||+..+|..+++|||+ .++|......+.+.|++++
T Consensus 163 ~lAraL~~~p~lllLDEPt------------------------------------------s~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPT------------------------------------------SALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp HHHHHHHTCCSEEEEESTT------------------------------------------TTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCC------------------------------------------ccCCHHHHHHHHHHHHHHH
Confidence 9999999888887878764 4677788899999999997
Q ss_pred HHhCCeEEEeccCCcccHHHHHH
Q psy13975 219 LKFGAGLFYTSAKEDKNCDLLYK 241 (415)
Q Consensus 219 ~~~Gasli~tS~k~~~n~~~l~~ 241 (415)
.+ |.+++++| ++++.+..
T Consensus 201 ~~-g~tvi~vt----Hd~~~~~~ 218 (262)
T 1b0u_A 201 EE-GKTMVVVT----HEMGFARH 218 (262)
T ss_dssp HT-TCCEEEEC----SCHHHHHH
T ss_pred hC-CCEEEEEe----CCHHHHHH
Confidence 65 99999999 45544443
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.88 E-value=9.2e-23 Score=202.26 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=114.4
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
+|+++||+|++| ++++|+|+|||||||||++|+|+++|++|.+. +.+.++..... .+.++++.++... .
T Consensus 15 ~l~~vsl~i~~G---e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-~~g~~i~~~~~-~~r~ig~v~Q~~~-l----- 83 (348)
T 3d31_A 15 SLDNLSLKVESG---EYFVILGPTGAGKTLFLELIAGFHVPDSGRIL-LDGKDVTDLSP-EKHDIAFVYQNYS-L----- 83 (348)
T ss_dssp EEEEEEEEECTT---CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCH-HHHTCEEECTTCC-C-----
T ss_pred EEeeeEEEEcCC---CEEEEECCCCccHHHHHHHHHcCCCCCCcEEE-ECCEECCCCch-hhCcEEEEecCcc-c-----
Confidence 899999999999 99999999999999999999999999999976 66666543221 2234555433211 1
Q ss_pred hhccCCCCCCchhhHHHHhc-------CC---chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 85 RFALNQETLPHTMVMLVVSM-------TT---PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d~-------~~---p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
+++.++..++.+ .. ...+++.++. .+.+++.+.+| |+|||||++|||||..+|..+++|
T Consensus 84 --------~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~~~~~~L--SgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 84 --------FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-EHLLDRNPLTL--SGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp --------CTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC-TTTTTSCGGGS--CHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred --------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCC-chHhcCChhhC--CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 222222222111 11 1122333332 12334555555 999999999999999888888888
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
||+ .++|....+.+.+.|++++.+.|.+++++||
T Consensus 153 EP~------------------------------------------s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 153 EPL------------------------------------------SALDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp SSS------------------------------------------TTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred Ccc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 764 4667778889999999998888999999995
No 19
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.88 E-value=9.8e-23 Score=195.77 Aligned_cols=165 Identities=15% Similarity=0.067 Sum_probs=110.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+.+|++|||+|++| ++++|+|+||||||||+++|+|+++|++|.+. +.+.++....... +.++++. .+.+.+
T Consensus 32 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~-~~g~~i~~~~~~~~~~~i~~v--~Q~~~l- 104 (271)
T 2ixe_A 32 VQVLQGLTFTLYPG---KVTALVGPNGSGKSTVAALLQNLYQPTGGKVL-LDGEPLVQYDHHYLHTQVAAV--GQEPLL- 104 (271)
T ss_dssp SCCEEEEEEEECTT---CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEEGGGBCHHHHHHHEEEE--CSSCCC-
T ss_pred ceeeEeeEEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE-ECCEEcccCCHHHHhccEEEE--ecCCcc-
Confidence 56999999999999 99999999999999999999999999999976 6666654322211 2334544 332211
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCC-----------------chhHHHHH--HhHHHHHHHHHhhhcCChhhHHHHHHHH
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTT-----------------PWNIIDEL--HNWASVLQDHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~-----------------p~~~l~~l--~~w~~~l~~~~~~L~lSgGekQRl~LAr 142 (415)
+. .++...+.+.. ...+++.+ +. ...+++.+.. ||+|||||++|||
T Consensus 105 -----------~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl-~~~~~~~~~~--LSgGq~QRv~lAr 169 (271)
T 2ixe_A 105 -----------FG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY-DTEVGETGNQ--LSGGQRQAVALAR 169 (271)
T ss_dssp -----------CS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGG-GSBCCGGGTT--SCHHHHHHHHHHH
T ss_pred -----------cc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcch-hhhhcCCcCC--CCHHHHHHHHHHH
Confidence 11 12221111110 00111111 00 0111223334 4999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
||..++..+++|||+ .++|.+..+.|++.|++++.+.|
T Consensus 170 aL~~~p~lllLDEPt------------------------------------------s~LD~~~~~~i~~~l~~~~~~~g 207 (271)
T 2ixe_A 170 ALIRKPRLLILDNAT------------------------------------------SALDAGNQLRVQRLLYESPEWAS 207 (271)
T ss_dssp HHTTCCSEEEEESTT------------------------------------------TTCCHHHHHHHHHHHHHCTTTTT
T ss_pred HHhcCCCEEEEECCc------------------------------------------cCCCHHHHHHHHHHHHHHHhhcC
Confidence 999888888888764 46777888899999999876679
Q ss_pred CeEEEeccC
Q psy13975 223 AGLFYTSAK 231 (415)
Q Consensus 223 asli~tS~k 231 (415)
.+++++||.
T Consensus 208 ~tviivtHd 216 (271)
T 2ixe_A 208 RTVLLITQQ 216 (271)
T ss_dssp SEEEEECSC
T ss_pred CEEEEEeCC
Confidence 999999953
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.88 E-value=3.8e-22 Score=199.63 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=114.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCC-----CccccceEEEEEecCc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDE-----YREDHTRLGVWILDGE 77 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~-----~~~~~~~l~i~~l~g~ 77 (415)
+.+|+|+||+|.+| ++++|+|+|||||||||++|+|+++|++|.+. +.+.++... ......++++.++...
T Consensus 16 ~~vl~~vsl~i~~G---e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 16 VTAVREMSLEVKDG---EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY-IGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp EEEEEEEEEEEETT---CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE-ETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred EEEEeeeEEEEcCC---CEEEEECCCCcHHHHHHHHHHcCCCCCccEEE-ECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 35899999999999 99999999999999999999999999999976 666555320 1112234555433211
Q ss_pred ccchhhhhhccCCCCCCchhhHHHHhc----CC-c--------hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 78 PAHSNLLRFALNQETLPHTMVMLVVSM----TT-P--------WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 78 ~~~~~Ll~~~l~~~~~~~~~v~~~~d~----~~-p--------~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
.+++.++...+.+ .. + ..+++.++. .+.+++.+.+| |+|||||++|||||
T Consensus 92 --------------l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~L--SGGq~QRvalArAL 154 (372)
T 1g29_1 92 --------------LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPREL--SGGQRQRVALGRAI 154 (372)
T ss_dssp --------------CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-GGGTTCCGGGS--CHHHHHHHHHHHHH
T ss_pred --------------cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCCcccC--CHHHHHHHHHHHHH
Confidence 1222222222111 10 1 112222222 12233444555 99999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..+|..+++|||+ .++|......+++.|++++.+.|.+
T Consensus 155 ~~~P~lLLLDEP~------------------------------------------s~LD~~~r~~l~~~l~~l~~~~g~t 192 (372)
T 1g29_1 155 VRKPQVFLMDEPL------------------------------------------SNLDAKLRVRMRAELKKLQRQLGVT 192 (372)
T ss_dssp HTCCSEEEEECTT------------------------------------------TTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred hcCCCEEEECCCC------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 9888888888764 3667778888999999998888999
Q ss_pred EEEecc
Q psy13975 225 LFYTSA 230 (415)
Q Consensus 225 li~tS~ 230 (415)
++|+||
T Consensus 193 vi~vTH 198 (372)
T 1g29_1 193 TIYVTH 198 (372)
T ss_dssp EEEEES
T ss_pred EEEECC
Confidence 999995
No 21
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.87 E-value=5e-22 Score=188.49 Aligned_cols=163 Identities=14% Similarity=0.101 Sum_probs=111.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~~ 82 (415)
++|+++||+|.+| ++++|+|+||||||||+++|+|+.+|+ |.+. +.+.++....... +.++++..+... .+.
T Consensus 14 ~vl~~vsl~i~~G---e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~-~~g~~~~~~~~~~~~~~i~~v~q~~~-~~~- 86 (249)
T 2qi9_C 14 TRLGPLSGEVRAG---EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQ-FAGQPLEAWSATKLALHRAYLSQQQT-PPF- 86 (249)
T ss_dssp TTEEEEEEEEETT---CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEE-ETTEEGGGSCHHHHHHHEEEECSCCC-CCT-
T ss_pred EEEeeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEE-ECCEECCcCCHHHHhceEEEECCCCc-cCC-
Confidence 5899999999999 999999999999999999999999999 9976 6665553322211 233444432211 111
Q ss_pred hhhhccCCCCCCchhhHHHHhcCC--------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc-----
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTT--------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL----- 149 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~--------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~----- 149 (415)
..++...+.+.. ...+++.++.. +.+++.+..| |+|||||++||||+..++.
T Consensus 87 ------------~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgGq~qrv~lAraL~~~p~~~~~~ 151 (249)
T 2qi9_C 87 ------------ATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQL--SGGEWQRVRLAAVVLQITPQANPA 151 (249)
T ss_dssp ------------TCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-GGTTSBGGGC--CHHHHHHHHHHHHHHHHCTTTCTT
T ss_pred ------------CCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-hHhcCChhhC--CHHHHHHHHHHHHHHcCCCcCCCC
Confidence 111211111110 11233333331 3334455555 9999999999999998777
Q ss_pred --cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEE
Q psy13975 150 --RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY 227 (415)
Q Consensus 150 --~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~ 227 (415)
.+++||| +.++|....+.+.+.|++++.+ |.++++
T Consensus 152 ~~lllLDEP------------------------------------------ts~LD~~~~~~l~~~l~~l~~~-g~tvii 188 (249)
T 2qi9_C 152 GQLLLLDEP------------------------------------------MNSLDVAQQSALDKILSALSQQ-GLAIVM 188 (249)
T ss_dssp CCEEEESST------------------------------------------TTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred CeEEEEECC------------------------------------------cccCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 6666765 4577788899999999999766 999999
Q ss_pred eccC
Q psy13975 228 TSAK 231 (415)
Q Consensus 228 tS~k 231 (415)
+||.
T Consensus 189 vtHd 192 (249)
T 2qi9_C 189 SSHD 192 (249)
T ss_dssp ECSC
T ss_pred EeCC
Confidence 9943
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.87 E-value=4.3e-22 Score=190.77 Aligned_cols=170 Identities=15% Similarity=0.076 Sum_probs=113.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+|+||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++... ..+.++++..+.....+..
T Consensus 20 ~~vl~~vsl~i~~G---e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~-~~g~~~~~~--~~~~~i~~v~q~~~~~~~~ 93 (266)
T 2yz2_A 20 KKALENVSLVINEG---ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL-YDGERKKGY--EIRRNIGIAFQYPEDQFFA 93 (266)
T ss_dssp EEEEEEEEEEECTT---CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEECCHH--HHGGGEEEECSSGGGGCCC
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE-ECCEECchH--HhhhhEEEEeccchhhcCC
Confidence 35899999999999 99999999999999999999999999999976 555554321 1223455543321111111
Q ss_pred h--hhhcc-CCCCCCchhhHHHHhcCC----chhHHHHHHhHH-HHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 83 L--LRFAL-NQETLPHTMVMLVVSMTT----PWNIIDELHNWA-SVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 83 L--l~~~l-~~~~~~~~~v~~~~d~~~----p~~~l~~l~~w~-~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
+ ..... ..... ..... ...+++.++... +.+++.+..| |+|||||++||||+..++..+++|
T Consensus 94 ~tv~enl~~~~~~~--------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L--SgGq~qRv~lAraL~~~p~lllLD 163 (266)
T 2yz2_A 94 ERVFDEVAFAVKNF--------YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFL--SGGEKRRVAIASVIVHEPDILILD 163 (266)
T ss_dssp SSHHHHHHHTTTTT--------CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGS--CHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CcHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHcCcCCcccccCChhhC--CHHHHHHHHHHHHHHcCCCEEEEc
Confidence 1 11000 00000 00000 112334443311 3344555566 999999999999999888888878
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
||+ .++|.+..+.+.+.|++++.+ |.+++++||.
T Consensus 164 EPt------------------------------------------s~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd 197 (266)
T 2yz2_A 164 EPL------------------------------------------VGLDREGKTDLLRIVEKWKTL-GKTVILISHD 197 (266)
T ss_dssp STT------------------------------------------TTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred Ccc------------------------------------------ccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC
Confidence 764 467778889999999999776 9999999965
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.86 E-value=4.4e-22 Score=188.70 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=110.9
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+.+|+++||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++....... +.++++. .+.+.+
T Consensus 22 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~-i~g~~~~~~~~~~~~~~i~~v--~Q~~~l- 94 (247)
T 2ff7_A 22 PVILDNINLSIKQG---EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL-IDGHDLALADPNWLRRQVGVV--LQDNVL- 94 (247)
T ss_dssp CEEEEEEEEEEETT---CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEETTTSCHHHHHHHEEEE--CSSCCC-
T ss_pred cceeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEEhhhCCHHHHHhcEEEE--eCCCcc-
Confidence 46899999999999 99999999999999999999999999999976 6666664332211 2334544 332211
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCC-------chhHHHHHHhHHHHHHHHHhh---------hcCChhhHHHHHHHHHhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTT-------PWNIIDELHNWASVLQDHIDS---------LNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~-------p~~~l~~l~~w~~~l~~~~~~---------L~lSgGekQRl~LArAl~ 145 (415)
+. .++...+.+.. .+.+++.++.+ +.+++.... -.||+|||||++||||+.
T Consensus 95 -----------~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~ 161 (247)
T 2ff7_A 95 -----------LN-RSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 161 (247)
T ss_dssp -----------TT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred -----------cc-ccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence 11 12222221111 01222333331 233322100 135999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++|||+ .++|.+....+++.|++++ .|.++
T Consensus 162 ~~p~lllLDEPt------------------------------------------s~LD~~~~~~i~~~l~~~~--~g~tv 197 (247)
T 2ff7_A 162 NNPKILIFDEAT------------------------------------------SALDYESEHVIMRNMHKIC--KGRTV 197 (247)
T ss_dssp TCCSEEEECCCC------------------------------------------SCCCHHHHHHHHHHHHHHH--TTSEE
T ss_pred cCCCEEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHc--CCCEE
Confidence 888877777753 4677788889999999984 49999
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++||.
T Consensus 198 iivtH~ 203 (247)
T 2ff7_A 198 IIIAHR 203 (247)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 999964
No 24
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.86 E-value=3.9e-22 Score=185.06 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=109.8
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
.+|+++||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++. ..+..+++. .+.+.+
T Consensus 23 ~il~~vsl~i~~G---e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~-~~g~~~~----~~~~~i~~v--~q~~~~--- 89 (214)
T 1sgw_A 23 PVLERITMTIEKG---NVVNFHGPNGIGKTTLLKTISTYLKPLKGEII-YNGVPIT----KVKGKIFFL--PEEIIV--- 89 (214)
T ss_dssp EEEEEEEEEEETT---CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-ETTEEGG----GGGGGEEEE--CSSCCC---
T ss_pred eEEeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE-ECCEEhh----hhcCcEEEE--eCCCcC---
Confidence 5899999999999 99999999999999999999999999999976 5555543 122334444 332211
Q ss_pred hhhccCCCCCCchhhHHHHh----c---C-C---chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccccc
Q psy13975 84 LRFALNQETLPHTMVMLVVS----M---T-T---PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAH 152 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~d----~---~-~---p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ 152 (415)
+...++...+. + . . ...+++.++.. .. ++.+..| |+|||||++||||+..++..++
T Consensus 90 ---------~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~L--SgGqkqrv~laraL~~~p~lll 156 (214)
T 1sgw_A 90 ---------PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-KKKLGEL--SQGTIRRVQLASTLLVNAEIYV 156 (214)
T ss_dssp ---------CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-TSBGGGS--CHHHHHHHHHHHHTTSCCSEEE
T ss_pred ---------CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-cC-CCChhhC--CHHHHHHHHHHHHHHhCCCEEE
Confidence 11111111111 0 0 0 01123333221 12 3444555 9999999999999998888888
Q ss_pred chhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 153 LIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 153 lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+|||+ .++|.+..+.+.+.|++++.+ |.+++++||..
T Consensus 157 LDEPt------------------------------------------s~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~ 193 (214)
T 1sgw_A 157 LDDPV------------------------------------------VAIDEDSKHKVLKSILEILKE-KGIVIISSREE 193 (214)
T ss_dssp EESTT------------------------------------------TTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSC
T ss_pred EECCC------------------------------------------cCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence 88764 466677788899999998754 89999999754
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.86 E-value=1.2e-21 Score=186.37 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=106.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+++||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. ...++++. .+.+.+
T Consensus 18 ~~vl~~isl~i~~G---e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v--~q~~~~-- 77 (253)
T 2nq2_C 18 NFLFQQLNFDLNKG---DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFV--PQFFSS-- 77 (253)
T ss_dssp TEEEEEEEEEEETT---CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEE--CSCCCC--
T ss_pred CeEEEEEEEEECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEE--cCCCcc--
Confidence 46899999999999 99999999999999999999999999999965 01234443 222211
Q ss_pred hhhhccCCCCCCchhhHHHHhcC-----------C------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMT-----------T------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~-----------~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~ 145 (415)
+...++...+.+. . ...+++.++.. +.+++.+..| |+|||||++||||+.
T Consensus 78 ----------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgGq~qrv~lAraL~ 144 (253)
T 2nq2_C 78 ----------PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSL--SGGQRQLILIARAIA 144 (253)
T ss_dssp ----------SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGS--CHHHHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhC--CHHHHHHHHHHHHHH
Confidence 0111111111110 0 01122222221 2233444445 999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.+|..+++|||+ .++|.+..+.+.+.|++++.+.|.++
T Consensus 145 ~~p~lllLDEPt------------------------------------------s~LD~~~~~~l~~~l~~l~~~~g~tv 182 (253)
T 2nq2_C 145 SECKLILLDEPT------------------------------------------SALDLANQDIVLSLLIDLAQSQNMTV 182 (253)
T ss_dssp TTCSEEEESSSS------------------------------------------TTSCHHHHHHHHHHHHHHHHTSCCEE
T ss_pred cCCCEEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 888877777763 46777888999999999987679999
Q ss_pred EEecc
Q psy13975 226 FYTSA 230 (415)
Q Consensus 226 i~tS~ 230 (415)
+++||
T Consensus 183 i~vtH 187 (253)
T 2nq2_C 183 VFTTH 187 (253)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99994
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.86 E-value=3.7e-22 Score=192.47 Aligned_cols=167 Identities=14% Similarity=0.026 Sum_probs=110.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecC--CCCcc-ccceEEEEEecCccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVS--DEYRE-DHTRLGVWILDGEPA 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~--~~~~~-~~~~l~i~~l~g~~~ 79 (415)
+++|+||||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++. ..... .+.++++..+.....
T Consensus 34 ~~vL~~isl~i~~G---e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 34 KTILKKISWQIAKG---DKWILYGLNGAGKTTLLNILNAYEPATSGTVN-LFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp EEEEEEEEEEEETT---CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-ETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred EEEEEeeeEEEcCC---CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEE-ECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 35899999999999 99999999999999999999999999999976 5555543 21111 123455543221101
Q ss_pred chhhhhhccCCCCCCchhhHHHHhcC-----------C------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHH
Q psy13975 80 HSNLLRFALNQETLPHTMVMLVVSMT-----------T------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~~~d~~-----------~------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LAr 142 (415)
+. ...++...+.+. . ...+++.++. .+.+++.+..| |+|||||++|||
T Consensus 110 ~~------------~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--SgGqkqRv~lAr 174 (279)
T 2ihy_A 110 FQ------------EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-SAKAQQYIGYL--STGEKQRVMIAR 174 (279)
T ss_dssp SC------------TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-GGGTTSBGGGS--CHHHHHHHHHHH
T ss_pred cC------------CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-hhHhcCChhhC--CHHHHHHHHHHH
Confidence 10 001111111110 0 0112222222 12233444444 999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
|+..++..+++|||+ .++|.+..+.+.+.|++++.+ |
T Consensus 175 aL~~~p~lLlLDEPt------------------------------------------s~LD~~~~~~l~~~l~~l~~~-g 211 (279)
T 2ihy_A 175 ALMGQPQVLILDEPA------------------------------------------AGLDFIARESLLSILDSLSDS-Y 211 (279)
T ss_dssp HHHTCCSEEEEESTT------------------------------------------TTCCHHHHHHHHHHHHHHHHH-C
T ss_pred HHhCCCCEEEEeCCc------------------------------------------cccCHHHHHHHHHHHHHHHHC-C
Confidence 999888887878764 467778889999999999876 9
Q ss_pred CeE--EEeccC
Q psy13975 223 AGL--FYTSAK 231 (415)
Q Consensus 223 asl--i~tS~k 231 (415)
.++ +++||.
T Consensus 212 ~tv~~iivtHd 222 (279)
T 2ihy_A 212 PTLAMIYVTHF 222 (279)
T ss_dssp TTCEEEEEESC
T ss_pred CEEEEEEEecC
Confidence 888 999964
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.86 E-value=1.5e-22 Score=192.16 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=105.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI--DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl--~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~ 80 (415)
+.+|+|+||+|.+| ++++|+|+||||||||+++|+|+ .+|++|.+. +.+.++.........+.++.++.+.+.+
T Consensus 16 ~~vl~~vsl~i~~G---e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 91 (250)
T 2d2e_A 16 ETILKGVNLVVPKG---EVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL-LDGENILELSPDERARKGLFLAFQYPVE 91 (250)
T ss_dssp EEEEEEEEEEEETT---CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEE-ETTEECTTSCHHHHHHTTBCCCCCCCC-
T ss_pred EEEEeceEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE-ECCEECCCCCHHHHHhCcEEEeccCCcc
Confidence 35899999999999 99999999999999999999998 788999976 6666654332222212223223332211
Q ss_pred hhhhhhccCCCCCCchhhHHHH--------hcC-Cch-------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 81 SNLLRFALNQETLPHTMVMLVV--------SMT-TPW-------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~v~~~~--------d~~-~p~-------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
+...++...+ ... ... .+++.++......++.+.. +||+|||||++||||+
T Consensus 92 ------------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 92 ------------VPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNE-GFSGGEKKRNEILQLL 158 (250)
T ss_dssp ------------CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTC-C----HHHHHHHHHHH
T ss_pred ------------ccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc-CCCHHHHHHHHHHHHH
Confidence 1111111111 000 001 1112221100112223333 1599999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..+|..+++|||+ .++|.+..+.+.+.|++++. .|.+
T Consensus 159 ~~~p~lllLDEPt------------------------------------------s~LD~~~~~~l~~~l~~l~~-~g~t 195 (250)
T 2d2e_A 159 VLEPTYAVLDETD------------------------------------------SGLDIDALKVVARGVNAMRG-PNFG 195 (250)
T ss_dssp HHCCSEEEEECGG------------------------------------------GTTCHHHHHHHHHHHHHHCS-TTCE
T ss_pred HcCCCEEEEeCCC------------------------------------------cCCCHHHHHHHHHHHHHHHh-cCCE
Confidence 9888888888764 46777888899999999864 5899
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 196 vi~vtHd 202 (250)
T 2d2e_A 196 ALVITHY 202 (250)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9999964
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.86 E-value=5.9e-22 Score=193.22 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=113.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+||||+|++| ++++|+|+||||||||+++|+|+++|++|.++ +++.++....... +.++++..+. +..
T Consensus 67 ~~vL~~isl~i~~G---e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~-i~G~~i~~~~~~~~r~~i~~v~Q~--~~l- 139 (306)
T 3nh6_A 67 RETLQDVSFTVMPG---QTLALVGPSGAGKSTILRLLFRFYDISSGCIR-IDGQDISQVTQASLRSHIGVVPQD--TVL- 139 (306)
T ss_dssp CEEEEEEEEEECTT---CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE-ETTEETTSBCHHHHHHTEEEECSS--CCC-
T ss_pred CceeeeeeEEEcCC---CEEEEECCCCchHHHHHHHHHcCCCCCCcEEE-ECCEEcccCCHHHHhcceEEEecC--Ccc-
Confidence 46899999999999 99999999999999999999999999999977 7777776543322 3345554332 211
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCc-------hhHHHHHHhHHHHHHHHHhh---------hcCChhhHHHHHHHHHhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTP-------WNIIDELHNWASVLQDHIDS---------LNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p-------~~~l~~l~~w~~~l~~~~~~---------L~lSgGekQRl~LArAl~ 145 (415)
+ ..++..++.+..+ +.+++.+..+ +.+...... ..||+|||||++||||+.
T Consensus 140 -----------f-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~-~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 140 -----------F-NDTIADNIRYGRVTAGNDEVEAAAQAAGIH-DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp -----------C-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCH-HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred -----------C-cccHHHHHHhhcccCCHHHHHHHHHHhCcH-HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 1 1123333322221 1222222221 333332211 135999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++|||++ ++|.+....|++.|++++ .|.++
T Consensus 207 ~~p~iLlLDEPts------------------------------------------~LD~~~~~~i~~~l~~l~--~~~Tv 242 (306)
T 3nh6_A 207 KAPGIILLDEATS------------------------------------------ALDTSNERAIQASLAKVC--ANRTT 242 (306)
T ss_dssp HCCSEEEEECCSS------------------------------------------CCCHHHHHHHHHHHHHHH--TTSEE
T ss_pred hCCCEEEEECCcc------------------------------------------cCCHHHHHHHHHHHHHHc--CCCEE
Confidence 8888888887643 566677778888898875 47899
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
|++||.
T Consensus 243 i~itH~ 248 (306)
T 3nh6_A 243 IVVAHR 248 (306)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 999854
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.85 E-value=4.4e-22 Score=188.23 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=107.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCcc-ccceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRE-DHTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~-~~~~l~i~~l~g~~~~~ 81 (415)
+.+|+++||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+.++...... .+.++++..+ .+.+
T Consensus 15 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~i~~v~q--~~~l- 87 (243)
T 1mv5_A 15 EQILRDISFEAQPN---SIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT-IDGQPIDNISLENWRSQIGFVSQ--DSAI- 87 (243)
T ss_dssp SCSEEEEEEEECTT---EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE-ETTEESTTTSCSCCTTTCCEECC--SSCC-
T ss_pred CceEEEeEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEEhhhCCHHHHHhhEEEEcC--CCcc-
Confidence 46999999999999 99999999999999999999999999999976 666665432211 1233444432 2211
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC-C---c----hhHHHHHHhHHHHHHH-----------HHhhhcCChhhHHHHHHHH
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT-T---P----WNIIDELHNWASVLQD-----------HIDSLNIGAHDYQAGRCCK 142 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~-~---p----~~~l~~l~~w~~~l~~-----------~~~~L~lSgGekQRl~LAr 142 (415)
+. .++...+.+. . . +.+++.+..+ +.+++ ... .||+|||||++|||
T Consensus 88 -----------~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~--~LSgGq~qrv~lAr 152 (243)
T 1mv5_A 88 -----------MA-GTIRENLTYGLEGDYTDEDLWQVLDLAFAR-SFVENMPDQLNTEVGERGV--KISGGQRQRLAIAR 152 (243)
T ss_dssp -----------CC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSB--CCCHHHHHHHHHHH
T ss_pred -----------cc-ccHHHHHhhhccCCCCHHHHHHHHHHhChH-HHHHhCccchhchhccCcC--cCCHHHHHHHHHHH
Confidence 11 1222222111 0 0 1111222111 11111 112 35999999999999
Q ss_pred HhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC
Q psy13975 143 LLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG 222 (415)
Q Consensus 143 Al~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G 222 (415)
|+..++..+++|||++ ++|.+....+.+.|++++ .|
T Consensus 153 al~~~p~lllLDEPts------------------------------------------~LD~~~~~~i~~~l~~~~--~~ 188 (243)
T 1mv5_A 153 AFLRNPKILMLDEATA------------------------------------------SLDSESESMVQKALDSLM--KG 188 (243)
T ss_dssp HHHHCCSEEEEECCSC------------------------------------------SSCSSSCCHHHHHHHHHH--TT
T ss_pred HHhcCCCEEEEECCcc------------------------------------------cCCHHHHHHHHHHHHHhc--CC
Confidence 9998888888887643 555566677788888886 49
Q ss_pred CeEEEeccC
Q psy13975 223 AGLFYTSAK 231 (415)
Q Consensus 223 asli~tS~k 231 (415)
.+++++||.
T Consensus 189 ~tvi~vtH~ 197 (243)
T 1mv5_A 189 RTTLVIAHR 197 (243)
T ss_dssp SEEEEECCS
T ss_pred CEEEEEeCC
Confidence 999999954
No 30
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.85 E-value=1.8e-20 Score=176.82 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=108.7
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
+|+|+||+|++. +++|+|+||||||||+++|+|+.+|++|.+. +.+.++.... ..+.++++. .+.+.
T Consensus 14 ~l~~isl~i~~e----~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~-~~~~~i~~v--~q~~~----- 80 (240)
T 2onk_A 14 FRLNVDFEMGRD----YCVLLGPTGAGKSVFLELIAGIVKPDRGEVR-LNGADITPLP-PERRGIGFV--PQDYA----- 80 (240)
T ss_dssp EEEEEEEEECSS----EEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSC-TTTSCCBCC--CSSCC-----
T ss_pred EEeeeEEEECCE----EEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEECCcCc-hhhCcEEEE--cCCCc-----
Confidence 599999999864 9999999999999999999999999999976 6665654311 112233333 22211
Q ss_pred hhccCCCCCCchhhHHHHhcCC-----------chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 85 RFALNQETLPHTMVMLVVSMTT-----------PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d~~~-----------p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+...++...+.+.. ...+++.++.+ +.+++.+.+| |+|||||++||||+..+|..+++
T Consensus 81 -------l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SgGqkqRv~lAral~~~p~lllL 150 (240)
T 2onk_A 81 -------LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARL--SGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp -------CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGS--CHHHHHHHHHHHHHTTCCSSBEE
T ss_pred -------cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhC--CHHHHHHHHHHHHHHcCCCEEEE
Confidence 112222222222111 01122222221 2223344444 99999999999999988888777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
|||+ .++|.+....+.+.|++++.+.|.+++++||
T Consensus 151 DEPt------------------------------------------s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtH 185 (240)
T 2onk_A 151 DEPL------------------------------------------SAVDLKTKGVLMEELRFVQREFDVPILHVTH 185 (240)
T ss_dssp ESTT------------------------------------------SSCCHHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred eCCc------------------------------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 8763 4677788899999999998888999999994
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.85 E-value=3.3e-22 Score=191.73 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=107.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEeceeecCCCCccccceEEEEEecCccc-
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI--DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA- 79 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl--~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~- 79 (415)
+++|+||||+|.+| ++++|+|+||||||||+++|+|+ .+|++|.+. +.+.++.........+.++.++.+.+.
T Consensus 33 ~~vl~~vsl~i~~G---e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~-~~g~~i~~~~~~~~~~~~i~~v~Q~~~l 108 (267)
T 2zu0_C 33 KAILRGLSLDVHPG---EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE-FKGKDLLALSPEDRAGEGIFMAFQYPVE 108 (267)
T ss_dssp EEEEEEEEEEECTT---CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEE-ETTEEGGGSCHHHHHHHTEEEECSSCCC
T ss_pred EEEEEeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE-ECCEECCcCCHHHHhhCCEEEEccCccc
Confidence 35899999999999 99999999999999999999998 468899976 666665432222222222333333321
Q ss_pred chhhhhhccCCCCCCchhhHH--HH----hcC--Cch-------hHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 80 HSNLLRFALNQETLPHTMVML--VV----SMT--TPW-------NIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~v~~--~~----d~~--~p~-------~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
+..+ ...+..... .. ... ... .+++.++.+....++.+.. .||+|||||++||||+
T Consensus 109 ~~~~--------tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-~LSgGq~QRv~iAraL 179 (267)
T 2zu0_C 109 IPGV--------SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMA 179 (267)
T ss_dssp CTTC--------BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTT-TCCHHHHHHHHHHHHH
T ss_pred cccc--------cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc-CCCHHHHHHHHHHHHH
Confidence 1111 000000000 00 000 001 1112221110111222221 2599999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..+|..+++|||+ .++|.+..+.+.+.|++++. .|.+
T Consensus 180 ~~~p~lLlLDEPt------------------------------------------s~LD~~~~~~l~~~l~~l~~-~g~t 216 (267)
T 2zu0_C 180 VLEPELCILDESD------------------------------------------SGLDIDALKVVADGVNSLRD-GKRS 216 (267)
T ss_dssp HHCCSEEEEESTT------------------------------------------TTCCHHHHHHHHHHHHTTCC-SSCE
T ss_pred HhCCCEEEEeCCC------------------------------------------CCCCHHHHHHHHHHHHHHHh-cCCE
Confidence 9888888888764 46777888889999998854 4899
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 217 viivtHd 223 (267)
T 2zu0_C 217 FIIVTHY 223 (267)
T ss_dssp EEEECSS
T ss_pred EEEEeeC
Confidence 9999954
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.83 E-value=5.1e-21 Score=182.70 Aligned_cols=162 Identities=11% Similarity=0.070 Sum_probs=106.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+++||+|++| ++++|+|+||||||||+++|+|++++ .|.+. +.+.++....... +.++++. .+.+.+
T Consensus 33 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~-i~g~~i~~~~~~~~~~~i~~v--~Q~~~l- 104 (260)
T 2ghi_A 33 HRTLKSINFFIPSG---TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIK-IGGKNVNKYNRNSIRSIIGIV--PQDTIL- 104 (260)
T ss_dssp SCSEEEEEEEECTT---CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEE-ETTEEGGGBCHHHHHTTEEEE--CSSCCC-
T ss_pred CceeEeeEEEECCC---CEEEEECCCCCCHHHHHHHHhccCCC-CeEEE-ECCEEhhhcCHHHHhccEEEE--cCCCcc-
Confidence 36999999999999 99999999999999999999999987 79876 6666654322111 2334544 332211
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCC----c---hhHHHHHHhHHHHHHH-----------HHhhhcCChhhHHHHHHHHH
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTT----P---WNIIDELHNWASVLQD-----------HIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~----p---~~~l~~l~~w~~~l~~-----------~~~~L~lSgGekQRl~LArA 143 (415)
+. .++...+.+.. . ..+++.++.+ +.++. ... .||+|||||++||||
T Consensus 105 -----------~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~l~~~~~~~~~~~~~--~LSgGqkqRv~lAra 169 (260)
T 2ghi_A 105 -----------FN-ETIKYNILYGKLDATDEEVIKATKSAQLY-DFIEALPKKWDTIVGNKGM--KLSGGERQRIAIARC 169 (260)
T ss_dssp -----------CS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCH-HHHHTSTTGGGCEESSSSB--CCCHHHHHHHHHHHH
T ss_pred -----------cc-cCHHHHHhccCCCCCHHHHHHHHHHhCCH-HHHHhccccccccccCCcC--cCCHHHHHHHHHHHH
Confidence 11 12222221111 0 1112222221 22211 112 359999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..+|..+++|||+ .++|.+....+++.|++++ + |.
T Consensus 170 L~~~p~lllLDEPt------------------------------------------s~LD~~~~~~i~~~l~~l~-~-~~ 205 (260)
T 2ghi_A 170 LLKDPKIVIFDEAT------------------------------------------SSLDSKTEYLFQKAVEDLR-K-NR 205 (260)
T ss_dssp HHHCCSEEEEECCC------------------------------------------CTTCHHHHHHHHHHHHHHT-T-TS
T ss_pred HHcCCCEEEEECcc------------------------------------------ccCCHHHHHHHHHHHHHhc-C-CC
Confidence 99888888888764 4667777888899999885 3 88
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 206 tviivtH~ 213 (260)
T 2ghi_A 206 TLIIIAHR 213 (260)
T ss_dssp EEEEECSS
T ss_pred EEEEEcCC
Confidence 99999954
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.83 E-value=8.4e-21 Score=190.82 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=110.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+.+|++|||+|++| ++++|+|||||||||||++|+|+++ ++|.++ +.+.++....... +..+++.++....+
T Consensus 34 ~~~L~~vsl~i~~G---e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~-i~G~~i~~~~~~~~rr~ig~v~Q~~~lf-- 106 (390)
T 3gd7_A 34 NAILENISFSISPG---QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ-IDGVSWDSITLEQWRKAFGVIPQKVFIF-- 106 (390)
T ss_dssp CCSEEEEEEEECTT---CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEE-ESSCBTTSSCHHHHHHTEEEESCCCCCC--
T ss_pred eEEeeceeEEEcCC---CEEEEECCCCChHHHHHHHHhCCCC-CCeEEE-ECCEECCcCChHHHhCCEEEEcCCcccC--
Confidence 46899999999999 9999999999999999999999987 889976 6666665433222 23455543332111
Q ss_pred hhhhhccCCCCCCchhhHHHHhcC------CchhHHHHHHhHHHHHHHHHhhh---------cCChhhHHHHHHHHHhhc
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMT------TPWNIIDELHNWASVLQDHIDSL---------NIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~------~p~~~l~~l~~w~~~l~~~~~~L---------~lSgGekQRl~LArAl~~ 146 (415)
. .++..++.+. +.+.+++.++. ...+++....+ .||+|||||++|||||..
T Consensus 107 ------------~-~tv~enl~~~~~~~~~~v~~~l~~~~L-~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 107 ------------S-GTFRKNLDPNAAHSDQEIWKVADEVGL-RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp ------------S-EEHHHHHCTTCCSCHHHHHHHHHHTTC-HHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred ------------c-cCHHHHhhhccccCHHHHHHHHHHhCC-HHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 1 1222222111 11234455555 24555555551 159999999999999998
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
+|..+++|||++ ++|......++..|+++ ..|.+++
T Consensus 173 ~P~lLLLDEPts------------------------------------------~LD~~~~~~l~~~l~~~--~~~~tvi 208 (390)
T 3gd7_A 173 KAKILLLDEPSA------------------------------------------HLDPVTYQIIRRTLKQA--FADCTVI 208 (390)
T ss_dssp TCCEEEEESHHH------------------------------------------HSCHHHHHHHHHHHHTT--TTTSCEE
T ss_pred CCCEEEEeCCcc------------------------------------------CCCHHHHHHHHHHHHHH--hCCCEEE
Confidence 888888888755 44455566666666664 2467888
Q ss_pred EeccC
Q psy13975 227 YTSAK 231 (415)
Q Consensus 227 ~tS~k 231 (415)
++||.
T Consensus 209 ~vtHd 213 (390)
T 3gd7_A 209 LCEAR 213 (390)
T ss_dssp EECSS
T ss_pred EEEcC
Confidence 88864
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.82 E-value=1e-20 Score=177.25 Aligned_cols=151 Identities=11% Similarity=0.068 Sum_probs=97.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+++||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+ ++++. .+.+.+
T Consensus 21 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g------------~i~~v--~q~~~~-- 80 (229)
T 2pze_A 21 TPVLKDINFKIERG---QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-HSG------------RISFC--SQFSWI-- 80 (229)
T ss_dssp CCSEEEEEEEEETT---CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-ECS------------CEEEE--CSSCCC--
T ss_pred ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCcCCccEEE-ECC------------EEEEE--ecCCcc--
Confidence 56999999999999 99999999999999999999999999999965 322 23333 332211
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCc------hhHHHHHHhHHHHHHHH-----------HhhhcCChhhHHHHHHHHHhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTP------WNIIDELHNWASVLQDH-----------IDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p------~~~l~~l~~w~~~l~~~-----------~~~L~lSgGekQRl~LArAl~ 145 (415)
+.. ++...+.+... ..+++.+.. .+.++.. .. .||+|||||++||||+.
T Consensus 81 ----------~~~-tv~enl~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~--~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 81 ----------MPG-TIKENIIFGVSYDEYRYRSVIKACQL-EEDISKFAEKDNIVLGEGGI--TLSGGQRARISLARAVY 146 (229)
T ss_dssp ----------CSB-CHHHHHHTTSCCCHHHHHHHHHHTTC-HHHHTTSTTGGGSCBCTTCT--TSCHHHHHHHHHHHHHH
T ss_pred ----------cCC-CHHHHhhccCCcChHHHHHHHHHhCc-HHHHHhCcccccccccCCCC--cCCHHHHHHHHHHHHHh
Confidence 111 22222221110 011111111 1112111 12 35999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHH-HHHHHHHhCCe
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQY-IRKFCLKFGAG 224 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~-LR~l~~~~Gas 224 (415)
.++..+++|||++ ++|.+....+.+. ++.++ .|.+
T Consensus 147 ~~p~lllLDEPts------------------------------------------~LD~~~~~~i~~~l~~~~~--~~~t 182 (229)
T 2pze_A 147 KDADLYLLDSPFG------------------------------------------YLDVLTEKEIFESCVCKLM--ANKT 182 (229)
T ss_dssp SCCSEEEEESTTT------------------------------------------TSCHHHHHHHHHHCCCCCT--TTSE
T ss_pred cCCCEEEEECccc------------------------------------------CCCHHHHHHHHHHHHHHhh--CCCE
Confidence 8888888887643 5566666666664 34443 3789
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 183 vi~vtH~ 189 (229)
T 2pze_A 183 RILVTSK 189 (229)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9999954
No 35
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.81 E-value=6.4e-20 Score=194.03 Aligned_cols=169 Identities=11% Similarity=0.058 Sum_probs=110.6
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|+|+++|++|.+. +++.++....... +.++++..++......
T Consensus 356 ~~~l~~i~l~i~~G---~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~-~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQG---KTVALVGRSGSGKSTIANLFTRFYDVDSGSIC-LDGHDVRDYKLTNLRRHFALVSQNVHLFND 431 (582)
T ss_pred ccccccceEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE-ECCEEhhhCCHHHHhcCeEEEcCCCccccc
Confidence 56999999999999 99999999999999999999999999999976 6676665433222 3345554333211111
Q ss_pred hhhhhccC-C-CCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHH-----------HhhhcCChhhHHHHHHHHHhhccc
Q psy13975 82 NLLRFALN-Q-ETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDH-----------IDSLNIGAHDYQAGRCCKLLTFAR 148 (415)
Q Consensus 82 ~Ll~~~l~-~-~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~-----------~~~L~lSgGekQRl~LArAl~~~~ 148 (415)
.+.++... . ....... .+.+++.++.+ +.+++. ... ||||||||++||||+..++
T Consensus 432 tv~eni~~~~~~~~~~~~---------~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~--LSgGq~qr~~iAral~~~p 499 (582)
T 3b5x_A 432 TIANNIAYAAEGEYTREQ---------IEQAARQAHAM-EFIENMPQGLDTVIGENGTS--LSGGQRQRVAIARALLRDA 499 (582)
T ss_pred cHHHHHhccCCCCCCHHH---------HHHHHHHCCCH-HHHHhCcccccchhcCCCCc--CCHHHHHHHHHHHHHHcCC
Confidence 11111110 0 0001100 11222222221 222222 223 4999999999999999888
Q ss_pred ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEe
Q psy13975 149 LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYT 228 (415)
Q Consensus 149 ~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~t 228 (415)
..+++|||++ ++|.+..+.+++.+++++ .|.+++++
T Consensus 500 ~illlDEpts------------------------------------------~LD~~~~~~i~~~l~~~~--~~~tvi~i 535 (582)
T 3b5x_A 500 PVLILDEATS------------------------------------------ALDTESERAIQAALDELQ--KNKTVLVI 535 (582)
T ss_pred CEEEEECccc------------------------------------------cCCHHHHHHHHHHHHHHc--CCCEEEEE
Confidence 8888887643 566677778888898875 38999999
Q ss_pred ccC
Q psy13975 229 SAK 231 (415)
Q Consensus 229 S~k 231 (415)
||.
T Consensus 536 tH~ 538 (582)
T 3b5x_A 536 AHR 538 (582)
T ss_pred ecC
Confidence 964
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.81 E-value=1.3e-20 Score=180.21 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=105.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|+ | ++++|+|+||||||||+++|+|+. |++|.+. +.+.++... . .+.+++. ++.+.+.+ .
T Consensus 18 ~~il~~vsl~i~-G---e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~-~~g~~~~~~-~-~~~~i~~-~v~Q~~~l-~ 87 (263)
T 2pjz_A 18 RFSLENINLEVN-G---EKVIILGPNGSGKTTLLRAISGLL-PYSGNIF-INGMEVRKI-R-NYIRYST-NLPEAYEI-G 87 (263)
T ss_dssp EEEEEEEEEEEC-S---SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEE-ETTEEGGGC-S-CCTTEEE-CCGGGSCT-T
T ss_pred ceeEEeeeEEEC-C---EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEE-ECCEECcch-H-HhhheEE-EeCCCCcc-C
Confidence 468999999999 9 999999999999999999999999 9999976 555555322 1 1233441 33332211 1
Q ss_pred hhhhccCCCCCCchhhHHHHhc-----CC----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM-----TT----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~-----~~----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.++...+.+ .. ...+++.++.+.+.+++.+..| |+|||||++||||+..+|..+++
T Consensus 88 -------------~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L--SgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 88 -------------VTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKL--SAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp -------------SBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGS--CHHHHHHHHHHHHHHTCCSEEEE
T ss_pred -------------CcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhC--CHHHHHHHHHHHHHHhCCCEEEE
Confidence 111111100 11 1123333333102334455555 99999999999999988888888
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
|||+ .++|.+..+.+.+.|++++. +++++||.
T Consensus 153 DEPt------------------------------------------s~LD~~~~~~l~~~L~~~~~----tviivtHd 184 (263)
T 2pjz_A 153 DEPF------------------------------------------ENVDAARRHVISRYIKEYGK----EGILVTHE 184 (263)
T ss_dssp ECTT------------------------------------------TTCCHHHHHHHHHHHHHSCS----EEEEEESC
T ss_pred ECCc------------------------------------------cccCHHHHHHHHHHHHHhcC----cEEEEEcC
Confidence 8764 46677778888888887642 89999964
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=177.16 Aligned_cols=151 Identities=8% Similarity=-0.006 Sum_probs=99.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+++|+++||+|++| ++++|+|+||||||||+++|+|+++|++|.+. +.+ ++++. .+.+.+
T Consensus 18 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~-~~g------------~i~~v--~Q~~~~-- 77 (237)
T 2cbz_A 18 PPTLNGITFSIPEG---ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA-IKG------------SVAYV--PQQAWI-- 77 (237)
T ss_dssp CCSEEEEEEEECTT---CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE-ECS------------CEEEE--CSSCCC--
T ss_pred CceeeeeEEEECCC---CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECC------------EEEEE--cCCCcC--
Confidence 57999999999999 99999999999999999999999999999965 322 23333 332211
Q ss_pred hhhhccCCCCCCchhhHHHHhcCC------chhHHHHHHhHHHHH-----------HHHHhhhcCChhhHHHHHHHHHhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTT------PWNIIDELHNWASVL-----------QDHIDSLNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~------p~~~l~~l~~w~~~l-----------~~~~~~L~lSgGekQRl~LArAl~ 145 (415)
...++...+.+.. ...+.+.++.+ +.+ .+.+.. ||+|||||++||||+.
T Consensus 78 -----------~~~tv~enl~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~--LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 78 -----------QNDSLRENILFGCQLEEPYYRSVIQACALL-PDLEILPSGDRTEIGEKGVN--LSGGQKQRVSLARAVY 143 (237)
T ss_dssp -----------CSEEHHHHHHTTSCCCTTHHHHHHHHTTCH-HHHTTSTTGGGSEESTTSBC--CCHHHHHHHHHHHHHH
T ss_pred -----------CCcCHHHHhhCccccCHHHHHHHHHHHhhH-HHHHhccccccccccCCCCC--CCHHHHHHHHHHHHHh
Confidence 1111211111110 01111111111 111 122333 4999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHH---HHHHHhC
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIR---KFCLKFG 222 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR---~l~~~~G 222 (415)
.++..+++|||++ ++|.+....+.+.++ .++ .|
T Consensus 144 ~~p~lllLDEPts------------------------------------------~LD~~~~~~i~~~l~~~~~~~--~~ 179 (237)
T 2cbz_A 144 SNADIYLFDDPLS------------------------------------------AVDAHVGKHIFENVIGPKGML--KN 179 (237)
T ss_dssp HCCSEEEEESTTT------------------------------------------TSCHHHHHHHHHHTTSTTSTT--TT
T ss_pred cCCCEEEEeCccc------------------------------------------ccCHHHHHHHHHHHHHHHhhc--CC
Confidence 8888888887643 566666677777664 332 48
Q ss_pred CeEEEeccC
Q psy13975 223 AGLFYTSAK 231 (415)
Q Consensus 223 asli~tS~k 231 (415)
.+++++||.
T Consensus 180 ~tviivtH~ 188 (237)
T 2cbz_A 180 KTRILVTHS 188 (237)
T ss_dssp SEEEEECSC
T ss_pred CEEEEEecC
Confidence 899999965
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.81 E-value=6.4e-20 Score=194.07 Aligned_cols=165 Identities=11% Similarity=0.050 Sum_probs=111.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|+|+++|++|.+. +++.++.+..... +.++++. .+++..
T Consensus 356 ~~~l~~v~~~i~~G---~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~-~~g~~~~~~~~~~~~~~i~~v--~Q~~~l- 428 (582)
T 3b60_A 356 VPALRNINLKIPAG---KTVALVGRSGSGKSTIASLITRFYDIDEGHIL-MDGHDLREYTLASLRNQVALV--SQNVHL- 428 (582)
T ss_dssp CCSEEEEEEEECTT---CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE-ETTEETTTBCHHHHHHTEEEE--CSSCCC-
T ss_pred CccccceeEEEcCC---CEEEEECCCCCCHHHHHHHHhhccCCCCCeEE-ECCEEccccCHHHHHhhCeEE--ccCCcC-
Confidence 56999999999999 99999999999999999999999999999976 6777765433222 2345554 332211
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCC--------chhHHHHHHhHHHHHHHHHhh---------hcCChhhHHHHHHHHHh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTT--------PWNIIDELHNWASVLQDHIDS---------LNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~--------p~~~l~~l~~w~~~l~~~~~~---------L~lSgGekQRl~LArAl 144 (415)
+. .++..++.+.. .+.+++.++.+ +.+++..+. -.||||||||++||||+
T Consensus 429 -----------~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 429 -----------FN-DTVANNIAYARTEEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp -----------CS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred -----------CC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 11 12222222111 01122222221 233332211 13599999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++|||++ ++|.+..+.+++.+++++ .|.+
T Consensus 496 ~~~p~illlDEpts------------------------------------------~LD~~~~~~i~~~l~~~~--~~~t 531 (582)
T 3b60_A 496 LRDSPILILDEATS------------------------------------------ALDTESERAIQAALDELQ--KNRT 531 (582)
T ss_dssp HHCCSEEEEETTTS------------------------------------------SCCHHHHHHHHHHHHHHH--TTSE
T ss_pred HhCCCEEEEECccc------------------------------------------cCCHHHHHHHHHHHHHHh--CCCE
Confidence 98888888887644 566677778888899885 3899
Q ss_pred EEEeccC
Q psy13975 225 LFYTSAK 231 (415)
Q Consensus 225 li~tS~k 231 (415)
++++||.
T Consensus 532 vi~itH~ 538 (582)
T 3b60_A 532 SLVIAHR 538 (582)
T ss_dssp EEEECSC
T ss_pred EEEEecc
Confidence 9999965
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=8.7e-20 Score=193.57 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=113.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|.|+++|++|.+. +++.++.+..... +.++++..++......
T Consensus 368 ~~~l~~isl~i~~G---~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~-~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPG---QKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL-VDGIDIRKIKRSSLRSSIGIVLQDTILFST 443 (598)
T ss_dssp SCSCCSEEEECCTT---CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEE-ETTEEGGGSCHHHHHHHEEEECTTCCCCSS
T ss_pred CccccceEEEEcCC---CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEE-ECCEEhhhCCHHHHHhceEEEeCCCccccc
Confidence 46899999999999 99999999999999999999999999999976 7777776543322 2345554332211111
Q ss_pred hhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 82 NLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 82 ~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
.+.++.. ......+..+...+.....+.+++.+. .+...+.+.... ||||||||++||||+..++..+++|||++
T Consensus 444 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~--LSgGq~Qrv~iAral~~~p~illlDEpts- 520 (598)
T 3qf4_B 444 TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED--LSQGQRQLLAITRAFLANPKILILDEATS- 520 (598)
T ss_dssp BHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTT--SCHHHHHHHHHHHHHHTCCSEEEECCCCT-
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCC--CCHHHHHHHHHHHHHhcCCCEEEEECCcc-
Confidence 1111111 100111111111111111111111110 001112222333 49999999999999998888888887644
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
++|.+....|++.++++. .|.+++++||..
T Consensus 521 -----------------------------------------~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l 550 (598)
T 3qf4_B 521 -----------------------------------------NVDTKTEKSIQAAMWKLM--EGKTSIIIAHRL 550 (598)
T ss_dssp -----------------------------------------TCCHHHHHHHHHHHHHHH--TTSEEEEESCCT
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHHc--CCCEEEEEecCH
Confidence 566677778888888874 489999999764
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.79 E-value=1.1e-19 Score=191.94 Aligned_cols=166 Identities=13% Similarity=0.121 Sum_probs=110.5
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
.++|+|+||+|++| ++++|+|+||||||||+++|.|+++|++|.+. +++.++....... +.++++. .+++..
T Consensus 354 ~~~l~~isl~i~~G---~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~-~~g~~~~~~~~~~~r~~i~~v--~Q~~~l- 426 (578)
T 4a82_A 354 APILKDINLSIEKG---ETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL-IDGHNIKDFLTGSLRNQIGLV--QQDNIL- 426 (578)
T ss_dssp CCSEEEEEEEECTT---CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE-ETTEEGGGSCHHHHHHTEEEE--CSSCCC-
T ss_pred CcceeeeEEEECCC---CEEEEECCCCChHHHHHHHHhcCCCCCCcEEE-ECCEEhhhCCHHHHhhheEEE--eCCCcc-
Confidence 46899999999999 99999999999999999999999999999976 7777775543322 2345554 332211
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCc----hh---HHHHHHhHHHHHHHHHhh---------hcCChhhHHHHHHHHHhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTP----WN---IIDELHNWASVLQDHIDS---------LNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p----~~---~l~~l~~w~~~l~~~~~~---------L~lSgGekQRl~LArAl~ 145 (415)
+.. ++..++.+..+ .. .++.... .+.++..... ..||||||||++||||+.
T Consensus 427 -----------~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~-~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 427 -----------FSD-TVKENILLGRPTATDEEVVEAAKMANA-HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp -----------CSS-BHHHHHGGGCSSCCHHHHHHHHHHTTC-HHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred -----------Ccc-cHHHHHhcCCCCCCHHHHHHHHHHhCc-HHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence 111 22222222211 11 1111111 1222222211 135999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++|||++ ++|.+....+++.++.+. .|.++
T Consensus 494 ~~p~illlDEpts------------------------------------------~LD~~~~~~i~~~l~~~~--~~~t~ 529 (578)
T 4a82_A 494 NNPPILILDEATS------------------------------------------ALDLESESIIQEALDVLS--KDRTT 529 (578)
T ss_dssp HCCSEEEEESTTT------------------------------------------TCCHHHHHHHHHHHHHHT--TTSEE
T ss_pred cCCCEEEEECccc------------------------------------------cCCHHHHHHHHHHHHHHc--CCCEE
Confidence 8888888888754 556666777888888773 47899
Q ss_pred EEeccCC
Q psy13975 226 FYTSAKE 232 (415)
Q Consensus 226 i~tS~k~ 232 (415)
+++||..
T Consensus 530 i~itH~l 536 (578)
T 4a82_A 530 LIVAHRL 536 (578)
T ss_dssp EEECSSG
T ss_pred EEEecCH
Confidence 9998553
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.79 E-value=9.2e-20 Score=193.31 Aligned_cols=164 Identities=14% Similarity=0.162 Sum_probs=110.8
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~~ 82 (415)
++|+|+||+|++| ++++|+|+||||||||+++|+|+++|++|.+. +++.++....... +.++++. .+++..
T Consensus 358 ~vl~~isl~i~~G---~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~-~~g~~i~~~~~~~~~~~i~~v--~Q~~~l-- 429 (595)
T 2yl4_A 358 PIFQDFSLSIPSG---SVTALVGPSGSGKSTVLSLLLRLYDPASGTIS-LDGHDIRQLNPVWLRSKIGTV--SQEPIL-- 429 (595)
T ss_dssp EEEEEEEEEECTT---CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE-ETTEETTTBCHHHHHHSEEEE--CSSCCC--
T ss_pred ccccceEEEEcCC---CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE-ECCEEhhhCCHHHHHhceEEE--ccCCcc--
Confidence 5899999999999 99999999999999999999999999999976 6777765533222 2345554 332211
Q ss_pred hhhhccCCCCCCchhhHHHHhcCC----------chhHHHHHHhHHHHHHHHH---hh------hcCChhhHHHHHHHHH
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTT----------PWNIIDELHNWASVLQDHI---DS------LNIGAHDYQAGRCCKL 143 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~----------p~~~l~~l~~w~~~l~~~~---~~------L~lSgGekQRl~LArA 143 (415)
+. .++..++.+.. .+.+++.++.+ +.+++.. +. ..||||||||++||||
T Consensus 430 ----------~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 430 ----------FS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAV-AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp ----------CS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCH-HHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred ----------cC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCH-HHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 11 12222221111 11222222221 2222221 10 1359999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++|||+ .++|.+....+++.+++++. |.
T Consensus 498 l~~~p~illlDEpt------------------------------------------s~LD~~~~~~i~~~l~~~~~--~~ 533 (595)
T 2yl4_A 498 LLKNPKILLLDEAT------------------------------------------SALDAENEYLVQEALDRLMD--GR 533 (595)
T ss_dssp HHHCCSEEEEECCC------------------------------------------SSCCHHHHHHHHHHHHHHHT--TS
T ss_pred HHcCCCEEEEECcc------------------------------------------cCCCHHHHHHHHHHHHHHhc--CC
Confidence 99888888888764 46666778888899998854 88
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 534 tvi~itH~ 541 (595)
T 2yl4_A 534 TVLVIAHR 541 (595)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 99999964
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.79 E-value=7.9e-20 Score=177.05 Aligned_cols=151 Identities=11% Similarity=0.080 Sum_probs=96.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|++| ++++|+|+||||||||+++|+|+.+|++|.+. +.+ ++++. .+.+.+
T Consensus 51 ~~vl~~isl~i~~G---e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~-~~g------------~i~~v--~Q~~~l-- 110 (290)
T 2bbs_A 51 TPVLKDINFKIERG---QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-HSG------------RISFC--SQNSWI-- 110 (290)
T ss_dssp CCSEEEEEEEECTT---CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEE-CCS------------CEEEE--CSSCCC--
T ss_pred ceEEEeeEEEEcCC---CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-ECC------------EEEEE--eCCCcc--
Confidence 46899999999999 99999999999999999999999999999965 221 23433 322211
Q ss_pred hhhhccCCCCCCchhhHHHHh-cCCc----hhHHHHHHhHHHHHHHH-----------HhhhcCChhhHHHHHHHHHhhc
Q psy13975 83 LLRFALNQETLPHTMVMLVVS-MTTP----WNIIDELHNWASVLQDH-----------IDSLNIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d-~~~p----~~~l~~l~~w~~~l~~~-----------~~~L~lSgGekQRl~LArAl~~ 146 (415)
+.. ++...+. .... ..+++.++. .+.++.. ... ||+|||||++||||+..
T Consensus 111 ----------~~~-tv~enl~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~--LSgGq~QRv~lAraL~~ 176 (290)
T 2bbs_A 111 ----------MPG-TIKENIIGVSYDEYRYRSVIKACQL-EEDISKFAEKDNIVLGEGGIT--LSGGQRARISLARAVYK 176 (290)
T ss_dssp ----------CSS-BHHHHHHTTCCCHHHHHHHHHHTTC-HHHHHTSTTGGGCBC----CC--CCHHHHHHHHHHHHHHS
T ss_pred ----------Ccc-cHHHHhhCcccchHHHHHHHHHhCh-HHHHHhccccccchhcCccCc--CCHHHHHHHHHHHHHHC
Confidence 111 1211111 0000 011111111 1122211 223 59999999999999998
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHH-HHHHHHHhCCeE
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQY-IRKFCLKFGAGL 225 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~-LR~l~~~~Gasl 225 (415)
++..+++|||++ ++|....+.+.+. ++.++ .|.++
T Consensus 177 ~p~lllLDEPts------------------------------------------~LD~~~~~~i~~~ll~~~~--~~~tv 212 (290)
T 2bbs_A 177 DADLYLLDSPFG------------------------------------------YLDVLTEKEIFESCVCKLM--ANKTR 212 (290)
T ss_dssp CCSEEEEESTTT------------------------------------------TCCHHHHHHHHHHCCCCCT--TTSEE
T ss_pred CCCEEEEECCcc------------------------------------------cCCHHHHHHHHHHHHHHhh--CCCEE
Confidence 888888887643 5566666666664 33443 38899
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++||.
T Consensus 213 iivtHd 218 (290)
T 2bbs_A 213 ILVTSK 218 (290)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999854
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=9.7e-20 Score=192.78 Aligned_cols=165 Identities=13% Similarity=0.100 Sum_probs=110.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
+++|+|+||+|++| ++++|+|+||||||||+++|.|+++|++|.+. +++.++....... +.++++.. +++..
T Consensus 356 ~~~l~~isl~i~~G---e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~-i~g~~i~~~~~~~~r~~i~~v~--Q~~~l- 428 (587)
T 3qf4_A 356 DPVLSGVNFSVKPG---SLVAVLGETGSGKSTLMNLIPRLIDPERGRVE-VDELDVRTVKLKDLRGHISAVP--QETVL- 428 (587)
T ss_dssp CCSEEEEEEEECTT---CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE-ESSSBGGGBCHHHHHHHEEEEC--SSCCC-
T ss_pred CcceeceEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-ECCEEcccCCHHHHHhheEEEC--CCCcC-
Confidence 46999999999999 99999999999999999999999999999976 6666665443322 33455543 32211
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCc----h---hHHHHHHhHHHHHHHHHhh---------hcCChhhHHHHHHHHHhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTP----W---NIIDELHNWASVLQDHIDS---------LNIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p----~---~~l~~l~~w~~~l~~~~~~---------L~lSgGekQRl~LArAl~ 145 (415)
+ ..++..++.+..+ . ...+....+ +.++...+. ..||||||||++||||+.
T Consensus 429 -----------f-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 429 -----------F-SGTIKENLKWGREDATDDEIVEAAKIAQIH-DFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp -----------C-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCH-HHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred -----------c-CccHHHHHhccCCCCCHHHHHHHHHHhCcH-HHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 1 1123333322221 1 111111111 222211111 135999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++|||++ ++|.+....|++.++++. .|.++
T Consensus 496 ~~p~illlDEpts------------------------------------------~LD~~~~~~i~~~l~~~~--~~~tv 531 (587)
T 3qf4_A 496 KKPKVLILDDCTS------------------------------------------SVDPITEKRILDGLKRYT--KGCTT 531 (587)
T ss_dssp TCCSEEEEESCCT------------------------------------------TSCHHHHHHHHHHHHHHS--TTCEE
T ss_pred cCCCEEEEECCcc------------------------------------------cCCHHHHHHHHHHHHHhC--CCCEE
Confidence 8888888887644 566667778888888863 58999
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++||.
T Consensus 532 i~itH~ 537 (587)
T 3qf4_A 532 FIITQK 537 (587)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999954
No 44
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.76 E-value=1.1e-18 Score=161.97 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=113.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-CCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-GID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|||+.|+|||||++++. +.+ .|+-| .+|....+ .......++.+|+++|++.|..+ .+.+++
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig--~d~~~k~~--~~~~~~v~l~iwDtaGqe~~~~l-----~~~~~~ 84 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG--IDFLSKTM--YLEDRTIRLQLWDTAGLERFRSL-----IPSYIR 84 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEE--ECSSCEEEEEEECCSCTTTCGGG-----HHHHHT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc--eEEEEEEE--EecceEEEEEEEECCCchhhhhH-----HHHHhc
Confidence 479999999999999999987 432 23333 22222222 12334578899999999988887 444555
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|++++.+ ++.+..|...+.+... +
T Consensus 85 ~a~~~ilv~di~~~~S-f~~i~~~~~~i~~~~~---------------------------------------------~- 117 (216)
T 4dkx_A 85 DSAAAVVVYDITNVNS-FQQTTKWIDDVRTERG---------------------------------------------S- 117 (216)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHT---------------------------------------------T-
T ss_pred cccEEEEEeecchhHH-HHHHHHHHHHHHHhcC---------------------------------------------C-
Confidence 655 467899998877 6777778655544331 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
++|+++||||+|+.. ++.++.++ .+.+|.++|+.+++||||++.|++.+|+.|+..+...
T Consensus 118 ------~~piilVgNK~Dl~~----~r~V~~~e-------~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 118 ------DVIIMLVGNKTDLAD----KRQVSIEE-------GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp ------SSEEEEEEECTTCGG----GCCSCHHH-------HHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred ------CCeEEEEeeccchHh----cCcccHHH-------HhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 689999999999853 35666655 7889999999999999999999999999999888764
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.75 E-value=8.9e-19 Score=200.51 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=116.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
.+||+|+||+|++| ++++|+|++|||||||++.|.|+++|++|.++ +++.|+.+...+. +.++++..++...+..
T Consensus 1092 ~~VL~~isl~I~~G---e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~-iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPG---QTLALVGPSGCGKSTVVALLERFYDTLGGEIF-IDGSEIKTLNPEHTRSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp SCSEEEEEEEECTT---CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEE-ETTEETTTBCHHHHHTTEEEECSSCCCCSE
T ss_pred CccccceeEEECCC---CEEEEECCCCChHHHHHHHHhcCccCCCCEEE-ECCEEhhhCCHHHHHhheEEECCCCEeeCc
Confidence 36999999999999 99999999999999999999999999999987 8888887765443 4566665444332333
Q ss_pred hhhhhc---cCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 82 NLLRFA---LNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 82 ~Ll~~~---l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
.+..+. +.+..+.+..+..++.....+.++..+.. -++..+.. .+||+|||||++||||+.+++..+++||+
T Consensus 1168 TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~---GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEa 1244 (1321)
T 4f4c_A 1168 SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPE---GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA 1244 (1321)
T ss_dssp EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTT---TTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESC
T ss_pred cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcC---CCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 332221 11222222222222222222222222100 01111111 13699999999999999988888888887
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++ .+|.+--..|++.|++.. .|.+++.++|+
T Consensus 1245 TS------------------------------------------aLD~~tE~~Iq~~l~~~~--~~~TvI~IAHR 1275 (1321)
T 4f4c_A 1245 TS------------------------------------------ALDTESEKVVQEALDRAR--EGRTCIVIAHR 1275 (1321)
T ss_dssp CC------------------------------------------STTSHHHHHHHHHHTTTS--SSSEEEEECSS
T ss_pred cc------------------------------------------cCCHHHHHHHHHHHHHHc--CCCEEEEeccC
Confidence 65 333344456788888753 48899998855
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.73 E-value=7.4e-18 Score=176.29 Aligned_cols=159 Identities=16% Similarity=0.051 Sum_probs=107.2
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
.|+++||+|.+| ++++|+|+||||||||+++|+|+.+|++|.+. +.. ..+++. .+....
T Consensus 283 ~l~~~~~~i~~G---ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~~-----------~~i~~~--~q~~~~---- 341 (538)
T 3ozx_A 283 QLVVDNGEAKEG---EIIGILGPNGIGKTTFARILVGEITADEGSVT-PEK-----------QILSYK--PQRIFP---- 341 (538)
T ss_dssp EEEECCEEEETT---CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE-SSC-----------CCEEEE--CSSCCC----
T ss_pred EEEeccceECCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECC-----------eeeEee--chhccc----
Confidence 466678889999 99999999999999999999999999999965 111 122222 221100
Q ss_pred hhccCCCCCCchhhHHHHhc-------CCc---hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 85 RFALNQETLPHTMVMLVVSM-------TTP---WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d~-------~~p---~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
.....+...+.. ... ..+++.++.. ..+++.+..| ||||||||+||||+.+++..+++|
T Consensus 342 --------~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SGGq~QRv~iAraL~~~p~lLlLD 410 (538)
T 3ozx_A 342 --------NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDL--SGGELQKLYIAATLAKEADLYVLD 410 (538)
T ss_dssp --------CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGC--CHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred --------ccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCChhhC--CHHHHHHHHHHHHHHcCCCEEEEe
Confidence 000011100000 000 0112222331 3344556666 999999999999999888877777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcc
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDK 234 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~ 234 (415)
|| +.++|.+....|++.|++++.+.|.+++++| +
T Consensus 411 EP------------------------------------------T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vs----H 444 (538)
T 3ozx_A 411 QP------------------------------------------SSYLDVEERYIVAKAIKRVTRERKAVTFIID----H 444 (538)
T ss_dssp ST------------------------------------------TTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC----S
T ss_pred CC------------------------------------------ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe----C
Confidence 75 3577778899999999999998999999999 5
Q ss_pred cHHHHHH
Q psy13975 235 NCDLLYK 241 (415)
Q Consensus 235 n~~~l~~ 241 (415)
+++.+..
T Consensus 445 dl~~~~~ 451 (538)
T 3ozx_A 445 DLSIHDY 451 (538)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5555444
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.73 E-value=5.6e-18 Score=179.51 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=108.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
..|++++|+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. + ..++++. .+....
T Consensus 370 ~~l~~~~~~v~~G---ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~-~------------~~~i~~v--~Q~~~~--- 428 (607)
T 3bk7_A 370 FKLEVEPGEIRKG---EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE-W------------DLTVAYK--PQYIKA--- 428 (607)
T ss_dssp CEEEECCEEEETT---CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC-C------------CCCEEEE--CSSCCC---
T ss_pred eEEEecccccCCC---CEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-E------------eeEEEEE--ecCccC---
Confidence 3578888889999 99999999999999999999999999999853 1 1234443 332211
Q ss_pred hhhccCCCCCCchhhHHHHh------cCC---chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 84 LRFALNQETLPHTMVMLVVS------MTT---PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~d------~~~---p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
....++...+. +.. ...+++.++.+ ..+++.+..| |||||||++||||+.+++..+++|
T Consensus 429 ---------~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 429 ---------EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII-DLYDRNVEDL--SGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp ---------CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-TTTTSBGGGC--CHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ---------CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-hHhcCChhhC--CHHHHHHHHHHHHHHhCCCEEEEe
Confidence 01111111110 000 01123333331 2334445555 999999999999999877777777
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcc
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDK 234 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~ 234 (415)
|| +.++|.+....+.+.|++++.++|.+++++| +
T Consensus 497 EP------------------------------------------t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs----H 530 (607)
T 3bk7_A 497 EP------------------------------------------SAYLDVEQRLAVSRAIRHLMEKNEKTALVVE----H 530 (607)
T ss_dssp CT------------------------------------------TTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC----S
T ss_pred CC------------------------------------------ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe----C
Confidence 75 3577788899999999999888899999999 4
Q ss_pred cHHHHHH
Q psy13975 235 NCDLLYK 241 (415)
Q Consensus 235 n~~~l~~ 241 (415)
+++.+..
T Consensus 531 d~~~~~~ 537 (607)
T 3bk7_A 531 DVLMIDY 537 (607)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5554443
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.73 E-value=4.7e-18 Score=194.11 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=110.3
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccch
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHS 81 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~ 81 (415)
.++|+|+||+|++| ++++|+|+||||||||+++|.|+++|++|.+. +++.++....... +.++++. .+++..
T Consensus 403 ~~vL~~isl~i~~G---~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~-i~g~~i~~~~~~~~r~~i~~v--~Q~~~l- 475 (1284)
T 3g5u_A 403 VQILKGLNLKVKSG---QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS-IDGQDIRTINVRYLREIIGVV--SQEPVL- 475 (1284)
T ss_dssp CCSEEEEEEEECTT---CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEE-ETTEEGGGSCHHHHHHHEEEE--CSSCCC-
T ss_pred CcceecceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEEHHhCCHHHHHhheEEE--cCCCcc-
Confidence 36999999999999 99999999999999999999999999999976 7777776544332 2345554 333311
Q ss_pred hhhhhccCCCCCCchhhHHHHhcCCc-------hhHHHHHHhHHHHHHHHHhhh---------cCChhhHHHHHHHHHhh
Q psy13975 82 NLLRFALNQETLPHTMVMLVVSMTTP-------WNIIDELHNWASVLQDHIDSL---------NIGAHDYQAGRCCKLLT 145 (415)
Q Consensus 82 ~Ll~~~l~~~~~~~~~v~~~~d~~~p-------~~~l~~l~~w~~~l~~~~~~L---------~lSgGekQRl~LArAl~ 145 (415)
+ ..++..++.+..+ +...+....+ +.+.+....+ .||||||||++||||+.
T Consensus 476 -----------~-~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~-~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 476 -----------F-ATTIAENIRYGREDVTMDEIEKAVKEANAY-DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp -----------C-SSCHHHHHHHHCSSCCHHHHHHHHHHTTCH-HHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred -----------C-CccHHHHHhcCCCCCCHHHHHHHHHHhCcH-HHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 1 1122222222111 1111222221 2233322211 36999999999999999
Q ss_pred cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeE
Q psy13975 146 FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGL 225 (415)
Q Consensus 146 ~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasl 225 (415)
.++..+++|||++ .+|.+....|++.++... .|.++
T Consensus 543 ~~p~iliLDEpts------------------------------------------~LD~~~~~~i~~~l~~~~--~~~t~ 578 (1284)
T 3g5u_A 543 RNPKILLLDEATS------------------------------------------ALDTESEAVVQAALDKAR--EGRTT 578 (1284)
T ss_dssp HCCSEEEEESTTC------------------------------------------SSCHHHHHHHHHHHHHHH--TTSEE
T ss_pred cCCCEEEEECCCC------------------------------------------CCCHHHHHHHHHHHHHHc--CCCEE
Confidence 8888888888754 444455567777787653 58999
Q ss_pred EEeccC
Q psy13975 226 FYTSAK 231 (415)
Q Consensus 226 i~tS~k 231 (415)
+++||.
T Consensus 579 i~itH~ 584 (1284)
T 3g5u_A 579 IVIAHR 584 (1284)
T ss_dssp EEECSC
T ss_pred EEEecC
Confidence 999965
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.72 E-value=6.8e-18 Score=193.21 Aligned_cols=179 Identities=18% Similarity=0.135 Sum_probs=113.9
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccc
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAH 80 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~ 80 (415)
+.++|+|+||+|++| +.++|+|++|||||||++.|.|+++|++|.+. +++.++++...+. +.+++++.++...+.
T Consensus 430 ~~~vL~~isl~i~~G---~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~-idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~ 505 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAG---QTVALVGSSGCGKSTIISLLLRYYDVLKGKIT-IDGVDVRDINLEFLRKNVAVVSQEPALFN 505 (1321)
T ss_dssp TSCSEEEEEEEECTT---CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEE-ETTEETTTSCHHHHHHHEEEECSSCCCCS
T ss_pred CCceeeceEEeecCC---cEEEEEecCCCcHHHHHHHhccccccccCccc-CCCccchhccHHHHhhcccccCCcceeeC
Confidence 357999999999999 99999999999999999999999999999977 7888887765443 344555533322222
Q ss_pred hhhhhhcc-CCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhh--hcCChhhHHHHHHHHHhhcccccccchhhh
Q psy13975 81 SNLLRFAL-NQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDS--LNIGAHDYQAGRCCKLLTFARLRAHLIELL 157 (415)
Q Consensus 81 ~~Ll~~~l-~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~--L~lSgGekQRl~LArAl~~~~~~~~lde~~ 157 (415)
..+..+.. ......+..+..++.....+.+++.+.. -.+..+.. ..||||||||++||||+..++..+++||++
T Consensus 506 ~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~---G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t 582 (1321)
T 4f4c_A 506 CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPN---GYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 582 (1321)
T ss_dssp EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTT---TTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCC---CCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence 22222211 1111222222222222222121211100 00111111 236999999999999999999999999886
Q ss_pred hhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 158 SFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 158 s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
| .+|.+-...|++.|+.+. .|.++|.++|.
T Consensus 583 S------------------------------------------aLD~~te~~i~~~l~~~~--~~~T~iiiaHr 612 (1321)
T 4f4c_A 583 S------------------------------------------ALDAESEGIVQQALDKAA--KGRTTIIIAHR 612 (1321)
T ss_dssp T------------------------------------------TSCTTTHHHHHHHHHHHH--TTSEEEEECSC
T ss_pred c------------------------------------------cCCHHHHHHHHHHHHHHh--CCCEEEEEccc
Confidence 6 223333456777887764 48899998854
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.72 E-value=5.9e-18 Score=177.24 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=107.3
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLL 84 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll 84 (415)
.|++++|+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+. + ..++++. .++...
T Consensus 301 ~l~~~~~~i~~G---e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~-~------------~~~i~~v--~Q~~~~---- 358 (538)
T 1yqt_A 301 RLEVEPGEIKKG---EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE-W------------DLTVAYK--PQYIKA---- 358 (538)
T ss_dssp EEEECCEEEETT---CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC-C------------CCCEEEE--CSSCCC----
T ss_pred EEEeCccccCCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-E------------CceEEEE--ecCCcC----
Confidence 477788889999 99999999999999999999999999999853 1 1234443 332211
Q ss_pred hhccCCCCCCchhhHHHHh------cCCc---hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchh
Q psy13975 85 RFALNQETLPHTMVMLVVS------MTTP---WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIE 155 (415)
Q Consensus 85 ~~~l~~~~~~~~~v~~~~d------~~~p---~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde 155 (415)
....++...+. +... ..+++.+... ..+++.+..| |||||||++|||++.+++..+++||
T Consensus 359 --------~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L--SGGe~qrv~lAraL~~~p~lLlLDE 427 (538)
T 1yqt_A 359 --------DYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVNEL--SGGELQRVAIAATLLRDADIYLLDE 427 (538)
T ss_dssp --------CCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGGGC--CHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred --------CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChhhC--CHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 01111111110 0110 0112222221 2234445555 9999999999999998887777777
Q ss_pred hhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCccc
Q psy13975 156 LLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKN 235 (415)
Q Consensus 156 ~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n 235 (415)
| +.++|......|++.|++++.++|.+++++| ++
T Consensus 428 P------------------------------------------t~~LD~~~~~~i~~~l~~l~~~~g~tvi~vs----Hd 461 (538)
T 1yqt_A 428 P------------------------------------------SAYLDVEQRLAVSRAIRHLMEKNEKTALVVE----HD 461 (538)
T ss_dssp T------------------------------------------TTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC----SC
T ss_pred C------------------------------------------cccCCHHHHHHHHHHHHHHHHhCCCEEEEEe----CC
Confidence 5 4577788899999999999888899999999 55
Q ss_pred HHHHHHH
Q psy13975 236 CDLLYKY 242 (415)
Q Consensus 236 ~~~l~~~ 242 (415)
++.+..+
T Consensus 462 ~~~~~~~ 468 (538)
T 1yqt_A 462 VLMIDYV 468 (538)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5554443
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.70 E-value=7e-18 Score=176.67 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=106.7
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE--------EeceeecCCCCcc-ccceEEEEEe
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL--------EYAYINVSDEYRE-DHTRLGVWIL 74 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il--------~~~~~~v~~~~~~-~~~~l~i~~l 74 (415)
.+|+++| +|.+| ++++|+|+||||||||+++|+|+..|+.|.+. .+.+..+...... ...+..+...
T Consensus 36 ~~l~~vs-~i~~G---e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEG---MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTT---SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred ccccCcC-cCCCC---CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhh
Confidence 3799999 99999 99999999999999999999999999998721 0011110000000 0011122222
Q ss_pred cCccc-chhhhhhccCCCCCCchhhHHHHh----cCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 75 DGEPA-HSNLLRFALNQETLPHTMVMLVVS----MTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 75 ~g~~~-~~~Ll~~~l~~~~~~~~~v~~~~d----~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
.+... +..+ +.. .+...++ ..+...+++.++.. ...++.+..| |+|||||++|||||..++.
T Consensus 112 ~q~~~~~~~~---------~~~-~v~e~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~L--SgGekQRv~iAraL~~~P~ 178 (538)
T 1yqt_A 112 PQYVDLIPKA---------VKG-KVIELLKKADETGKLEEVVKALELE-NVLEREIQHL--SGGELQRVAIAAALLRNAT 178 (538)
T ss_dssp CSCGGGSGGG---------CCS-BHHHHHHHHCSSSCHHHHHHHTTCT-TTTTSBGGGC--CHHHHHHHHHHHHHHSCCS
T ss_pred hhhhhhcchh---------hhc-cHHHHHhhhhHHHHHHHHHHHcCCC-hhhhCChhhC--CHHHHHHHHHHHHHhcCCC
Confidence 22110 0000 011 1111111 11223445555542 3345556666 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|.+..+.+.++|++++. .|.+++++|
T Consensus 179 lLlLDEPT------------------------------------------s~LD~~~~~~l~~~L~~l~~-~g~tvi~vs 215 (538)
T 1yqt_A 179 FYFFDEPS------------------------------------------SYLDIRQRLNAARAIRRLSE-EGKSVLVVE 215 (538)
T ss_dssp EEEEESTT------------------------------------------TTCCHHHHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred EEEEECCc------------------------------------------ccCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 88888764 46777888899999999975 699999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 216 Hd 217 (538)
T 1yqt_A 216 HD 217 (538)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.69 E-value=1.6e-17 Score=189.70 Aligned_cols=165 Identities=14% Similarity=0.106 Sum_probs=112.1
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccc-cceEEEEEecCcccchh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYRED-HTRLGVWILDGEPAHSN 82 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~-~~~l~i~~l~g~~~~~~ 82 (415)
++|+|+||+|++| ++++|+|+||||||||+++|.|+++|++|.+. +++.++....... +.++++..++....
T Consensus 1047 ~~l~~vsl~i~~G---e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~l~--- 1119 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKG---QTLALVGSSGCGKSTVVQLLERFYDPMAGSVF-LDGKEIKQLNVQWLRAQLGIVSQEPILF--- 1119 (1284)
T ss_dssp CSBSSCCEEECSS---SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE-SSSSCTTSSCHHHHTTSCEEEESSCCCC---
T ss_pred eeecceeEEEcCC---CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE-ECCEEcccCCHHHHHhceEEECCCCccc---
Confidence 6899999999999 99999999999999999999999999999976 6777765543322 34556654433111
Q ss_pred hhhhccCCCCCCchhhHHHHhcCCc---------hhHHHHHHhHHHHHHHHHhhh---------cCChhhHHHHHHHHHh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSMTTP---------WNIIDELHNWASVLQDHIDSL---------NIGAHDYQAGRCCKLL 144 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~~~p---------~~~l~~l~~w~~~l~~~~~~L---------~lSgGekQRl~LArAl 144 (415)
+.++..++.+..+ +..++....+ +.+++..+.+ .||||||||++||||+
T Consensus 1120 ------------~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~-~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1120 ------------DCSIAENIAYGDNSRVVSYEEIVRAAKEANIH-QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp ------------SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCH-HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred ------------cccHHHHHhccCCCCCCCHHHHHHHHHHhCcH-HHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 1122222222111 1112222221 2222222211 3699999999999999
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG 224 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas 224 (415)
..++..+++|||+ .++|.+....|++.|+.+ ..|.+
T Consensus 1187 ~~~p~iLiLDEpT------------------------------------------s~lD~~~~~~i~~~l~~~--~~~~t 1222 (1284)
T 3g5u_A 1187 VRQPHILLLDEAT------------------------------------------SALDTESEKVVQEALDKA--REGRT 1222 (1284)
T ss_dssp HHCCSSEEEESCS------------------------------------------SSCCHHHHHHHHHHHHHH--SSSSC
T ss_pred HcCCCEEEEeCCc------------------------------------------ccCCHHHHHHHHHHHHHh--CCCCE
Confidence 9888888888764 456667777888888875 35899
Q ss_pred EEEeccCC
Q psy13975 225 LFYTSAKE 232 (415)
Q Consensus 225 li~tS~k~ 232 (415)
++++||..
T Consensus 1223 vi~isH~l 1230 (1284)
T 3g5u_A 1223 CIVIAHRL 1230 (1284)
T ss_dssp EEEECSCT
T ss_pred EEEEecCH
Confidence 99999653
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.69 E-value=1e-17 Score=177.43 Aligned_cols=169 Identities=15% Similarity=0.078 Sum_probs=107.7
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE--------EeceeecCCCCcc-ccceEEEEEe
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL--------EYAYINVSDEYRE-DHTRLGVWIL 74 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il--------~~~~~~v~~~~~~-~~~~l~i~~l 74 (415)
.+|+++| +|.+| ++++|+|+||||||||+++|+|+..|+.|.+. .+.+.++...... ...+..+...
T Consensus 106 ~~l~~vs-~i~~G---e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDG---MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTT---SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeeCCCC-CCCCC---CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEe
Confidence 3799999 99999 99999999999999999999999999999821 0011111000000 0011122222
Q ss_pred cCcccchhhhhhccCCCCCCchhhHHHHhc----CCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSM----TTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 75 ~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~----~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
.+.... . +..+.. .+...+.. .....+++.++.. ..+++.+..| |+|||||++|||||..++..
T Consensus 182 ~q~~~~---~-----~~~~~~-tv~e~l~~~~~~~~~~~~L~~lgL~-~~~~~~~~~L--SGGekQRvaIAraL~~~P~l 249 (607)
T 3bk7_A 182 PQYVDL---L-----PKAVKG-KVRELLKKVDEVGKFEEVVKELELE-NVLDRELHQL--SGGELQRVAIAAALLRKAHF 249 (607)
T ss_dssp CSCGGG---G-----GGTCCS-BHHHHHHHTCCSSCHHHHHHHTTCT-TGGGSBGGGC--CHHHHHHHHHHHHHHSCCSE
T ss_pred echhhh---c-----hhhccc-cHHHHhhhhHHHHHHHHHHHHcCCC-chhCCChhhC--CHHHHHHHHHHHHHhcCCCE
Confidence 221100 0 000111 22222211 1223455555552 4455666666 99999999999999988888
Q ss_pred ccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
+++|||+ .++|......+.+.|++++. .|.+++++||
T Consensus 250 LlLDEPT------------------------------------------s~LD~~~~~~l~~~L~~l~~-~g~tvIivsH 286 (607)
T 3bk7_A 250 YFFDEPS------------------------------------------SYLDIRQRLKVARVIRRLAN-EGKAVLVVEH 286 (607)
T ss_dssp EEEECTT------------------------------------------TTCCHHHHHHHHHHHHHHHH-TTCEEEEECS
T ss_pred EEEECCc------------------------------------------ccCCHHHHHHHHHHHHHHHh-cCCEEEEEec
Confidence 8888764 46777888899999999975 5999999995
Q ss_pred C
Q psy13975 231 K 231 (415)
Q Consensus 231 k 231 (415)
.
T Consensus 287 d 287 (607)
T 3bk7_A 287 D 287 (607)
T ss_dssp C
T ss_pred C
Confidence 3
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6e-17 Score=171.46 Aligned_cols=167 Identities=20% Similarity=0.268 Sum_probs=107.5
Q ss_pred CeeeEeEEEcCC--CcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 5 YYDVFVLRFNDG--SVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 5 iL~~vs~~i~~G--~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
++++++|++.+| ..+++++|+|+||||||||+++|+|+.+|++|.. +. ...++ ++.+....
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-------~~------~~~i~--~~~q~~~~-- 424 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-------IP------KLNVS--MKPQKIAP-- 424 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-------CC------SCCEE--EECSSCCC--
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-------cc------CCcEE--Eecccccc--
Confidence 578899999888 1225699999999999999999999999999861 10 11222 22222100
Q ss_pred hhhhccCCCCCCchhhHHH--HhcC----Cc---hhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 83 LLRFALNQETLPHTMVMLV--VSMT----TP---WNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~--~d~~----~p---~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
.+. ..+... ..+. .. ..+++.++.+ ..+++.+..| ||||||||+|||||..++..+++
T Consensus 425 ---------~~~-~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~L--SGGqkQRv~iAraL~~~p~lLlL 491 (608)
T 3j16_B 425 ---------KFP-GTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHL--SGGELQRVAIVLALGIPADIYLI 491 (608)
T ss_dssp ---------CCC-SBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSC--CHHHHHHHHHHHHTTSCCSEEEE
T ss_pred ---------cCC-ccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhC--CHHHHHHHHHHHHHHhCCCEEEE
Confidence 000 011000 0000 00 1122333321 2233444445 99999999999999987777777
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCc
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKED 233 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~ 233 (415)
||| +.++|.+....+.+.|++++.+.|.+++++|
T Consensus 492 DEP------------------------------------------T~gLD~~~~~~i~~ll~~l~~~~g~tviivt---- 525 (608)
T 3j16_B 492 DEP------------------------------------------SAYLDSEQRIICSKVIRRFILHNKKTAFIVE---- 525 (608)
T ss_dssp CCT------------------------------------------TTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC----
T ss_pred ECC------------------------------------------CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe----
Confidence 765 4577888899999999999888899999999
Q ss_pred ccHHHHHHHHHHHHh
Q psy13975 234 KNCDLLYKYLAHRLY 248 (415)
Q Consensus 234 ~n~~~l~~~l~h~l~ 248 (415)
|+++.+..+ .++++
T Consensus 526 Hdl~~~~~~-aDrvi 539 (608)
T 3j16_B 526 HDFIMATYL-ADKVI 539 (608)
T ss_dssp SCHHHHHHH-CSEEE
T ss_pred CCHHHHHHh-CCEEE
Confidence 556555443 34443
No 55
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.65 E-value=4e-16 Score=136.17 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||+++|.|... ++.|... .. .+ ........+.+|++.|...+..+ ...++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~-~~--~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY--DR-SI--VVDGEEASLMVYDIWEQDGGRWL-----PGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEE--EE-EE--EETTEEEEEEEEECC--------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccce--EE-EE--EECCEEEEEEEEECCCCccchhh-----hhhhhhh
Confidence 4799999999999999999987543 2223211 10 11 11223467889999998877666 4444555
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 73 ~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~------------------------------------------------ 103 (166)
T 3q72_A 73 GDAYVIVYSVTDKGS-FEKASELRVQLRRARQ------------------------------------------------ 103 (166)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC------------------------------------------------
Confidence 55 467888888766 5666666433322211
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
..++|+++|+||+|+.. ++.+..++ .+.++..+|+.+++||++++.+++.+++.|.+.+.
T Consensus 104 ---~~~~p~ilv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 104 ---TDDVPIILVGNKSDLVR----SREVSVDE-------GRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp -----CCCEEEEEECTTCCS----SCCSCHHH-------HHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ---CCCCCEEEEEecccccc----ccccCHHH-------HHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Confidence 01789999999999964 23444433 57788889999999999999999999999988764
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.64 E-value=3e-16 Score=168.49 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=51.0
Q ss_pred HHHhhhcCChhhHHHHHHHHHhhcccc--cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcc
Q psy13975 123 DHIDSLNIGAHDYQAGRCCKLLTFARL--RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDF 200 (415)
Q Consensus 123 ~~~~~L~lSgGekQRl~LArAl~~~~~--~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~ 200 (415)
+.+..| |+|||||++|||||..++. .+++||| +.
T Consensus 198 ~~~~~L--SGGe~QRv~iArAL~~~p~~~lLlLDEP------------------------------------------ts 233 (670)
T 3ux8_A 198 RSAGTL--SGGEAQRIRLATQIGSRLTGVLYVLDEP------------------------------------------SI 233 (670)
T ss_dssp CBGGGS--CHHHHHHHHHHHHHHTCCCSCEEEEECT------------------------------------------TT
T ss_pred CCcccC--CHHHHHHHHHHHHHhhCCCCCEEEEECC------------------------------------------cc
Confidence 334445 9999999999999997766 6666765 34
Q ss_pred cCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 201 YYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 201 ~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++|....+.+.+.|+++.. .|.+++++||.
T Consensus 234 gLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd 263 (670)
T 3ux8_A 234 GLHQRDNDRLIATLKSMRD-LGNTLIVVEHD 263 (670)
T ss_dssp TCCGGGHHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 6777888999999999964 59999999954
No 57
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.64 E-value=2e-15 Score=132.02 Aligned_cols=157 Identities=18% Similarity=0.285 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+-. .++.|.. +....+.. ......+.+|+++|...+..+ ....+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 77 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLNI--GGKRVNLAIWDTAGQERFHAL-----GPIYYR 77 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEES--SSCEEEEEEEECCCC------------CCSST
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceE--EEEEEEEE--CCEEEEEEEEECCCcHhhhhh-----HHHHhc
Confidence 579999999999999999998432 2333321 11111111 223467889999998776655 444555
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+...
T Consensus 78 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 109 (170)
T 1z08_A 78 DSNGAILVYDITDEDS-FQKVKNWVKELRKMLG----------------------------------------------- 109 (170)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 555 467888888665 5566666544433221
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+... +.+..++ ++.+|.++|+.++++|++++.+++.++++|.+.++.
T Consensus 110 -----~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 110 -----NEICLCIVGNKIDLEKE----RHVSIQE-------AESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp -----GGSEEEEEEECGGGGGG----CCSCHHH-------HHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred -----CCCeEEEEEECcccccc----cccCHHH-------HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 16899999999999642 3343333 567888899999999999999999999999988753
No 58
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.64 E-value=9.9e-16 Score=137.90 Aligned_cols=158 Identities=16% Similarity=0.264 Sum_probs=110.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .++.|... .. .+. .......+.+|+++|+..+..+ ...++.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~--~~-~~~--~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~ 93 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF--SH-VMK--YKNEEFILHLWDTAGQEEYDRL-----RPLSYA 93 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE--EE-EEE--ETTEEEEEEEEEECCSGGGTTT-----GGGGCT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee--EE-EEE--ECCEEEEEEEEECCCcHHHHHH-----hHhhcc
Confidence 489999999999999999998532 23333322 11 111 1223456899999998877666 333455
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
+.. +++++|.+++.+ ++.+ ..|...+.+.. +
T Consensus 94 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------~ 126 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTS-FDNISTKWEPEIKHYI----------------------------------------------D 126 (194)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC----------------------------------------------T
T ss_pred CCcEEEEEEECCCHHH-HHHHHHHHHHHHHHhC----------------------------------------------C
Confidence 555 467889888776 4443 66654443321 0
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe-EEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG-LFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas-li~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
++|+++|+||+|+... ..+.+..++ ++.+|.++|+. +++||++++.+++.+++.|.+.++..
T Consensus 127 -------~~p~ilv~nK~Dl~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 127 -------TAKTVLVGLKVDLRKD--GSDDVTKQE-------GDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp -------TSEEEEEEECGGGCCT--TTTCCCHHH-------HHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred -------CCCEEEEEEChhhccC--CCCcccHHH-------HHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999742 223334333 67888889998 99999999999999999999998864
No 59
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.64 E-value=2.4e-15 Score=133.34 Aligned_cols=159 Identities=18% Similarity=0.185 Sum_probs=110.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHh-CC----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ-GI----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~-Gl----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|. +. ..++.+... ...... ......+.+|+++|...+..+ ...++.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~----~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~ 76 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV----NGQEYHLQLVDTAGQDEYSIF-----PQTYSI 76 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE----TTEEEEEEEEECCCCCTTCCC-----CGGGTT
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE----CCEEEEEEEEeCCCchhhhHH-----HHHHHh
Confidence 589999999999999999997 32 234444422 111111 223467889999998776555 333444
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+....
T Consensus 77 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---------------------------------------------- 109 (181)
T 3t5g_A 77 DINGYILVYSVTSIKS-FEVIKVIHGKLLDMVGK---------------------------------------------- 109 (181)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHHHHHHC------------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 544 467888888766 56666665443333211
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
.++|+++|+||+|+.. ++.+..++ ++.+|.++|+.++++|++++.+++.++..|.+.+....
T Consensus 110 -----~~~p~ilv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 110 -----VQIPIMLVGNKKDLHM----ERVISYEE-------GKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp -------CCEEEEEECTTCTT----TCCSCHHH-------HHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred -----CCCCEEEEEECccchh----cceecHHH-------HHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 1789999999999853 23444444 68889999999999999999999999999999988753
No 60
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=9.3e-16 Score=140.06 Aligned_cols=157 Identities=22% Similarity=0.287 Sum_probs=108.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-CCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-IDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+ ... ++.|. ++....+.. ......+.+|+++|...+..+ ....+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~-----~~~~~~ 97 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV--DFMIKTVEI--NGEKVKLQIWDTAGQERFRSI-----TQSYYR 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSE--EEEEEEEEE--TTEEEEEEEEEECCSGGGHHH-----HGGGST
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccce--eEEEEEEEE--CCEEEEEEEEECCCcHHHHHH-----HHHHHh
Confidence 4899999999999999999874 322 22232 222111111 123467899999998877666 333445
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
.+. +++++|.+++.+ ++.+..|...+.+...
T Consensus 98 ~~d~~i~v~D~~~~~s-~~~~~~~~~~i~~~~~----------------------------------------------- 129 (201)
T 2ew1_A 98 SANALILTYDITCEES-FRCLPEWLREIEQYAS----------------------------------------------- 129 (201)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSC-----------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 555 467889888765 5556666444332210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+.. .+.+..++ ++.++..+|..+++||++++.+++.++.+|...++.
T Consensus 130 -----~~~piilv~NK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 130 -----NKVITVLVGNKIDLAE----RREVSQQR-------AEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp -----TTCEEEEEEECGGGGG----GCSSCHHH-------HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEECCCCcc----ccccCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1789999999999963 23344333 567778889999999999999999999999988874
No 61
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.63 E-value=1.3e-15 Score=140.16 Aligned_cols=161 Identities=19% Similarity=0.251 Sum_probs=113.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+- ..|+.|.. |. ..+ ........+.+|++.|...|..+ ...++.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~--~~-~~~--~~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 97 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--YT-ACL--ETEEQRVELSLWDTSGSPYYDNV-----RPLCYS 97 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE--EE-EEE--EC--CEEEEEEEEECCSGGGTTT-----GGGGCT
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeee--EE-EEE--EECCEEEEEEEEECCCCHhHHHH-----HHHHcC
Confidence 58999999999999999999743 23344432 21 111 11234567899999998887766 334455
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.++...+..|...+.+.. +
T Consensus 98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------------------------------------~---- 130 (214)
T 3q3j_B 98 DSDAVLLCFDISRPETVDSALKKWRTEILDYC-------------------------------------------P---- 130 (214)
T ss_dssp TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-------------------------------------------T----
T ss_pred CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-------------------------------------------C----
Confidence 555 4778999988774433677765554332 0
Q ss_pred ccccccCCcEEEEEeCcchhhhhhh--------cccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCccc-HHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEK--------DFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKN-CDLLYKYL 243 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~--------~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n-~~~l~~~l 243 (415)
++|+++|+||+|+...... .+.+..++ ++.+|.++|+ .+++||++++.+ ++.+|+.+
T Consensus 131 ------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 131 ------STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQ-------GCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp ------TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH-------HHHHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred ------CCCEEEEEEChhhccchhhhhhhcccccCccCHHH-------HHHHHHHcCCCEEEEeccCCCcccHHHHHHHH
Confidence 6899999999999753211 12343333 7888999999 999999999998 99999999
Q ss_pred HHHHhCC
Q psy13975 244 AHRLYGF 250 (415)
Q Consensus 244 ~h~l~~~ 250 (415)
...++..
T Consensus 198 ~~~~~~~ 204 (214)
T 3q3j_B 198 SMLCLNK 204 (214)
T ss_dssp HHHHHC-
T ss_pred HHHHhcc
Confidence 9988864
No 62
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.62 E-value=6.3e-16 Score=135.91 Aligned_cols=157 Identities=19% Similarity=0.153 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCccc--chhhhhhccCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA--HSNLLRFALNQETL 93 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~--~~~Ll~~~l~~~~~ 93 (415)
-+++|+|+.|+|||||+++|.+... ++.|.-. ....+. .......+.+|++.|... +..+ ....+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~-----~~~~~ 75 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLT--VDGEDTTLVVVDTWEAEKLDKSWS-----QESCL 75 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEE--ETTEEEEEEEECCC-------CHH-----HHHTT
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEE--ECCEEEEEEEEecCCCCccchhhh-----HHhhc
Confidence 4799999999999999999987532 2233211 001110 112345678999988765 3333 22233
Q ss_pred Cchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 94 PHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 94 ~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
.... +++++|.+++.+ ++.+..|...+.+...
T Consensus 76 ~~~~~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~---------------------------------------------- 108 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGS-FESASELRIQLRRTHQ---------------------------------------------- 108 (175)
T ss_dssp TSCSEEEEEEETTCHHH-HHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhc----------------------------------------------
Confidence 4333 467788888765 5555555433322110
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
..++|+++|+||+|+... +.+..++ .+.++..+|+.+++||++++.+++.+++.|.+.+.
T Consensus 109 -----~~~~piilv~NK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 109 -----ADHVPIILVGNKADLARC----REVSVEE-------GRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp --------CCEEEEEECTTCTTT----CCSCHHH-------HHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----cCCCCEEEEEEChhhccc----cccCHHH-------HHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 017899999999999642 3344333 56778888999999999999999999999988775
No 63
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=138.07 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=108.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .++.+.. +. ..+ ........+.+|+++|...+..+ ....+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~-~~~--~~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~ 94 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENT--YS-KIV--TLGKDEFHLHLVDTAGQDEYSIL-----PYSFII 94 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEE--EE-EEE--C----CEEEEEEEECCCCTTCCC-----CGGGTT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceE--EE-EEE--EECCEEEEEEEEECCCccchHHH-----HHHHHh
Confidence 689999999999999999998532 2333331 21 111 11234567899999998777655 333445
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+....
T Consensus 95 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------------- 127 (201)
T 3oes_A 95 GVHGYVLVYSVTSLHS-FQVIESLYQKLHEGHGK---------------------------------------------- 127 (201)
T ss_dssp TCCEEEEEEETTCHHH-HHHHHHHHHHHHC--------------------------------------------------
T ss_pred cCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 555 467888888765 55555664333322110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.++|+++|+||+|+.. ++.+..++ ++.++..+|+.++++|++++.+++.++..|.+.+...
T Consensus 128 -----~~~piilv~nK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 128 -----TRVPVVLVGNKADLSP----EREVQAVE-------GKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp ------CCCEEEEEECTTCGG----GCCSCHHH-------HHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred -----CCCCEEEEEECccCcc----ccccCHHH-------HHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 1789999999999864 23444444 6788889999999999999999999999999988764
No 64
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.62 E-value=4.3e-15 Score=131.03 Aligned_cols=156 Identities=21% Similarity=0.336 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+.. .++.|.- +....+.. ......+.+|+++|...+..+ ....+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~ 80 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVD--FKIRTVEI--NGEKVKLQIWDTAGQERFRTI-----TSTYYR 80 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEE--EEEEEEEE--TTEEEEEEEEEETTGGGCSSC-----CGGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeE--EEEEEEEE--CCEEEEEEEEcCCCchhhhhh-----HHHHhc
Confidence 479999999999999999998642 2333332 22111111 223467899999998776655 333344
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+.. +
T Consensus 81 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~----------------------------------------------~- 112 (181)
T 3tw8_B 81 GTHGVIVVYDVTSAES-FVNVKRWLHEINQNC----------------------------------------------D- 112 (181)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHHHHHHC----------------------------------------------T-
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhC----------------------------------------------C-
Confidence 444 467888888765 555555644332221 0
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+.. .+.+..+. .+.++..+|+.++++|++++.+++.+++.|.+.++.
T Consensus 113 ------~~p~ilv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 113 ------DVCRILVGNKNDDPE----RKVVETED-------AYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp ------TSEEEEEEECTTCGG----GCCSCHHH-------HHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ------CCCEEEEEECCCCch----hcccCHHH-------HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999864 23333333 677888899999999999999999999999888764
No 65
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.61 E-value=3.1e-15 Score=133.05 Aligned_cols=159 Identities=16% Similarity=0.220 Sum_probs=107.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC---CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS---PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~---p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+.|+|||||+++|.+... ...+....+....+.. ......+.+|+++|...+..+ ....+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~~~ 83 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV--GGKYVKLQIWDTAGQERFRSV-----TRSYYRGA 83 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE--TTEEEEEEEEEECCSGGGHHH-----HHTTSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEeCCCcHHHHHH-----HHHHHhcC
Confidence 5899999999999999999974321 1122222222221111 123457899999998877666 33345555
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|...+.....
T Consensus 84 d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~------------------------------------------------- 113 (186)
T 2bme_A 84 AGALLVYDITSRET-YNALTNWLTDARMLAS------------------------------------------------- 113 (186)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHHHHHHSC-------------------------------------------------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHHHHhcC-------------------------------------------------
Confidence 5 467888888665 4555556433322210
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+.. .+.+..++ ++.+|..+|..+++||++++.+++.+++++.+.++.
T Consensus 114 ---~~~piilv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 114 ---QNIVIILCGNKKDLDA----DREVTFLE-------ASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp ---TTCEEEEEEECGGGGG----GCCSCHHH-------HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---CCCcEEEEEECccccc----ccccCHHH-------HHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1789999999999953 23343333 567888899999999999999999999999988874
No 66
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=4.8e-15 Score=129.22 Aligned_cols=158 Identities=18% Similarity=0.323 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+.. .|+.|.........+ ......+.+|+++|...+..+... .+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G~~~~~~~~~~-----~~~ 74 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI----NEHTVKFEIWDTAGQERFASLAPX-----YYR 74 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE----TTEEEEEEEEEECCSGGGGGGHHH-----HHT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE----CCEEEEEEEEECCCChhhhhhhhh-----hhc
Confidence 479999999999999999997432 234443221111111 123457899999998877665322 223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+...
T Consensus 75 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 106 (170)
T 1ek0_A 75 NAQAALVVYDVTKPQS-FIKARHWVKELHEQAS----------------------------------------------- 106 (170)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHHHHHHSC-----------------------------------------------
T ss_pred cCcEEEEEEecCChHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 333 467788888765 4555555433322210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
.++|+++|+||+|+....+ .+.+..+. .+.++..+|+.++++|++++.+++.++++|.+.+
T Consensus 107 -----~~~piilv~nK~Dl~~~~~-~~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 107 -----KDIIIALVGNKIDXLQEGG-ERKVAREE-------GEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp -----TTCEEEEEEECGGGGGSSC-CCCSCHHH-------HHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred -----CCCcEEEEEECCCcccccc-ccCCCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1789999999999975311 12333322 5678888999999999999999999999998765
No 67
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.61 E-value=3.5e-16 Score=163.58 Aligned_cols=167 Identities=14% Similarity=0.051 Sum_probs=99.5
Q ss_pred eeeEeEEE-cCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEec-------eeecCCCCc---c-ccceEEEEE
Q psy13975 6 YDVFVLRF-NDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYA-------YINVSDEYR---E-DHTRLGVWI 73 (415)
Q Consensus 6 L~~vs~~i-~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~-------~~~v~~~~~---~-~~~~l~i~~ 73 (415)
|+-..|.+ .+| ++++|+|+||||||||+++|+|++.|+.|.+.... .++...... . ......+..
T Consensus 14 f~l~~l~~~~~G---ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~ 90 (538)
T 3ozx_A 14 FKLFGLPTPKNN---TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVH 90 (538)
T ss_dssp CEEECCCCCCTT---EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEE
T ss_pred eeecCCCCCCCC---CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhh
Confidence 44444533 478 99999999999999999999999999999741000 011111000 0 001112222
Q ss_pred ecCcccchhhhhhccCCCCCCchhhHHHHhc----CCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccc
Q psy13975 74 LDGEPAHSNLLRFALNQETLPHTMVMLVVSM----TTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARL 149 (415)
Q Consensus 74 l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~----~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~ 149 (415)
..+...+ .+..+.. .+...+.. .....+++.++.. ...++.+..| |+|||||++||||+..++.
T Consensus 91 ~~~~~~~--------~~~~~~~-~v~~~l~~~~~~~~~~~~l~~l~l~-~~~~~~~~~L--SgGe~Qrv~iA~aL~~~p~ 158 (538)
T 3ozx_A 91 KIQYVEY--------ASKFLKG-TVNEILTKIDERGKKDEVKELLNMT-NLWNKDANIL--SGGGLQRLLVAASLLREAD 158 (538)
T ss_dssp ECSCTTG--------GGTTCCS-BHHHHHHHHCCSSCHHHHHHHTTCG-GGTTSBGGGC--CHHHHHHHHHHHHHHSCCS
T ss_pred ccchhhh--------hhhhccC-cHHHHhhcchhHHHHHHHHHHcCCc-hhhcCChhhC--CHHHHHHHHHHHHHHcCCC
Confidence 1111100 0000111 11111111 1223445555442 3445566666 9999999999999998888
Q ss_pred cccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 150 RAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 150 ~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
.+++|||+ .++|......+.+.|++++ + |.+++++|
T Consensus 159 illlDEPt------------------------------------------s~LD~~~~~~l~~~l~~l~-~-g~tii~vs 194 (538)
T 3ozx_A 159 VYIFDQPS------------------------------------------SYLDVRERMNMAKAIRELL-K-NKYVIVVD 194 (538)
T ss_dssp EEEEESTT------------------------------------------TTCCHHHHHHHHHHHHHHC-T-TSEEEEEC
T ss_pred EEEEECCc------------------------------------------ccCCHHHHHHHHHHHHHHh-C-CCEEEEEE
Confidence 88888764 4666777888888999885 3 89999999
Q ss_pred cC
Q psy13975 230 AK 231 (415)
Q Consensus 230 ~k 231 (415)
|.
T Consensus 195 Hd 196 (538)
T 3ozx_A 195 HD 196 (538)
T ss_dssp SC
T ss_pred eC
Confidence 54
No 68
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.61 E-value=1.2e-15 Score=135.69 Aligned_cols=159 Identities=21% Similarity=0.350 Sum_probs=86.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPE---KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~---~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+.|+|||||+++|.+-.... .+....+....+.. ......+.+|+++|...+..+ ....+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~~~ 81 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL--DGKRIKLQIWDTAGQERFRTI-----TTAYYRGA 81 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEE--TTEEEEEEEEEC--------------CCTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE--CCEEEEEEEEcCCCChhhhhh-----HHHHHhcC
Confidence 579999999999999999998542211 12212222111111 123467899999998777665 44556665
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|...+.+...
T Consensus 82 d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------- 111 (183)
T 2fu5_C 82 MGIMLVYDITNEKS-FDNIRNWIRNIEEHAS------------------------------------------------- 111 (183)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHHHHHHSC-------------------------------------------------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHHHHhcC-------------------------------------------------
Confidence 5 467889888766 5556566444332210
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+... +.+..++ ++.+|.++|+.+++||++++.+++.++..|.+.++.
T Consensus 112 ---~~~piilv~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 112 ---ADVEKMILGNKCDVNDK----RQVSKER-------GEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp ---TTCEEEEEEEC--CCSC----CCSCHHH-------HHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred ---CCCCEEEEEECccCCcc----CcCCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 17899999999999632 2333333 577888899999999999999999999999988764
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.61 E-value=9.2e-17 Score=162.45 Aligned_cols=184 Identities=22% Similarity=0.220 Sum_probs=121.9
Q ss_pred CCeeeEeEEEcCCCccc--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCc
Q psy13975 4 PYYDVFVLRFNDGSVIG--------------------NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYR 63 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e--------------------~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~ 63 (415)
.+|++|+|+|++| + +++|+|+||||||||+++|.|+.+|++|.+. +.+.+..
T Consensus 37 ~~l~~is~~i~~G---e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~-~~g~~~t---- 108 (413)
T 1tq4_A 37 EILNLIELRMRAG---NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK-TGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC-CCC--------
T ss_pred HHhhhccceecCC---CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEE-ECCeecc----
Confidence 4789999999999 8 9999999999999999999999999999854 2222211
Q ss_pred cccceEEEEEecCcccchhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChh--hHHHHHHH
Q psy13975 64 EDHTRLGVWILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAH--DYQAGRCC 141 (415)
Q Consensus 64 ~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgG--ekQRl~LA 141 (415)
+.++.... +.+..+ .+.+...+ .........+++.+... + .+..+ .+|+| |+||+.||
T Consensus 109 ----~~~~v~q~--~~~~~l--------tv~D~~g~-~~~~~~~~~~L~~~~L~-~-~~~~~---~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 109 ----MERHPYKH--PNIPNV--------VFWDLPGI-GSTNFPPDTYLEKMKFY-E-YDFFI---IISATRFKKNDIDIA 168 (413)
T ss_dssp ----CCCEEEEC--SSCTTE--------EEEECCCG-GGSSCCHHHHHHHTTGG-G-CSEEE---EEESSCCCHHHHHHH
T ss_pred ----eeEEeccc--cccCCe--------eehHhhcc-cchHHHHHHHHHHcCCC-c-cCCeE---EeCCCCccHHHHHHH
Confidence 11222222 111111 00000000 00011122334433321 1 01111 14888 99999999
Q ss_pred HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHH--
Q psy13975 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCL-- 219 (415)
Q Consensus 142 rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~-- 219 (415)
+++.. .+.|+++|.||.|++-.+|++.++|....+.+.+.++.++.
T Consensus 169 ~aL~~--------------------------------~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~ 216 (413)
T 1tq4_A 169 KAISM--------------------------------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 216 (413)
T ss_dssp HHHHH--------------------------------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHh--------------------------------cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 99971 27899999999999999999999999999999999999973
Q ss_pred --HhC---CeEEEecc--CCcccHHHHHHHHHHHH
Q psy13975 220 --KFG---AGLFYTSA--KEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 220 --~~G---asli~tS~--k~~~n~~~l~~~l~h~l 247 (415)
+.| ..+|.+|+ .++.+++.+.+++...+
T Consensus 217 l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 217 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 333 35555555 55668999988887655
No 70
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.60 E-value=6.8e-16 Score=137.21 Aligned_cols=156 Identities=16% Similarity=0.192 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+. ..++.+... .....+ ......+.+|+++|...+..+... .+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~----~~~~~~l~i~Dt~G~~~~~~~~~~-----~~~ 88 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI----DNQWAILDVLDTAGQEEFSAMREQ-----YMR 88 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE----TTEEEEEEEEECCSCGGGCSSHHH-----HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe----CCcEEEEEEEECCCchhhHHHHHH-----HHh
Confidence 58899999999999999999743 233333322 111111 223456788999998776555222 223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+....
T Consensus 89 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---------------------------------------------- 121 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKAS-FEHVDRFHQLILRVKDR---------------------------------------------- 121 (183)
T ss_dssp HCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHTS----------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 333 467788888766 56666665444333211
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccC-CcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK-EDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k-~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+.. .+.+..++ ++.+|.++|+.+++||++ ++.+++.+++.|.+.+.
T Consensus 122 -----~~~p~ilv~nK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 122 -----ESFPMILVANKVDLMH----LRKVTRDQ-------GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp -----SCCCEEEEEECTTCST----TCCSCHHH-------HHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEECCCchh----ccCcCHHH-------HHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 1789999999999864 23444444 678888999999999999 99999999999988764
No 71
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.60 E-value=6.5e-15 Score=128.55 Aligned_cols=156 Identities=17% Similarity=0.259 Sum_probs=105.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+.. .++.|.......... ......+.+|+++|...+..+... .+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dt~G~~~~~~~~~~-----~~~ 77 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY----QNELHKFLIWDTAGLERFRALAPM-----YYR 77 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE----TTEEEEEEEEEECCSGGGGGGTHH-----HHT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE----CCeEEEEEEEcCCCchhhhcccHh-----hCc
Confidence 479999999999999999998542 344454221111111 223467889999998776655222 223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+... +
T Consensus 78 ~~~~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~------------------------------------------~---- 110 (170)
T 1z0j_A 78 GSAAAIIVYDITKEET-FSTLKNWVRELRQHGP------------------------------------------P---- 110 (170)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHHHHHHSC------------------------------------------T----
T ss_pred CCCEEEEEEECcCHHH-HHHHHHHHHHHHHhCC------------------------------------------C----
Confidence 333 467788887665 4555566444332210 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.+|+++|+||+|+... +.+..++ ++.+|..++..++++|++++.+++.+++.|.+.+.
T Consensus 111 ------~~~iilv~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 111 ------SIVVAIAGNKCDLTDV----REVMERD-------AKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ------TSEEEEEEECTTCGGG----CCSCHHH-------HHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ------CCcEEEEEECCccccc----cccCHHH-------HHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 6899999999999642 2333333 57788889999999999999999999999987653
No 72
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.60 E-value=1.9e-15 Score=166.24 Aligned_cols=150 Identities=14% Similarity=0.067 Sum_probs=94.1
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN 82 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~ 82 (415)
+.+|+++||+|.+| ++++|+|+||||||||+++|+| |.+ .+.+.. ...+ +.++.++..
T Consensus 448 ~~iL~~vsl~I~~G---e~v~LiGpNGsGKSTLLk~Lag------G~i---~g~~~~-----~~~~--~~~v~q~~~--- 505 (986)
T 2iw3_A 448 KILLNKTQLRLKRA---RRYGICGPNGCGKSTLMRAIAN------GQV---DGFPTQ-----EECR--TVYVEHDID--- 505 (986)
T ss_dssp EEEEEEEEEEEETT---CEEEEECSTTSSHHHHHHHHHH------TCS---TTCCCT-----TTSC--EEETTCCCC---
T ss_pred EEeEecceEEEcCC---CEEEEECCCCCCHHHHHHHHhC------CCc---CCCccc-----ccee--EEEEccccc---
Confidence 45899999999999 9999999999999999999984 221 111110 0112 222322110
Q ss_pred hhhhccCCCCCCchhhHHHHhc------CCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhh
Q psy13975 83 LLRFALNQETLPHTMVMLVVSM------TTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIEL 156 (415)
Q Consensus 83 Ll~~~l~~~~~~~~~v~~~~d~------~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~ 156 (415)
..+....+...+.. .+...+++.++......++.+..| |+|||||++||||+..++..+++|||
T Consensus 506 --------~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~L--SGGqkQRvaLArAL~~~P~lLLLDEP 575 (986)
T 2iw3_A 506 --------GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISAL--SGGWKMKLALARAVLRNADILLLDEP 575 (986)
T ss_dssp --------CCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGC--CHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred --------ccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccC--CHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 00111111111110 011233444444224456667777 99999999999999988888888876
Q ss_pred hhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc
Q psy13975 157 LSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA 230 (415)
Q Consensus 157 ~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~ 230 (415)
++ ++|.+..+.+.++|+. +|.+++++||
T Consensus 576 Ts------------------------------------------~LD~~~~~~l~~~L~~----~g~tvIivSH 603 (986)
T 2iw3_A 576 TN------------------------------------------HLDTVNVAWLVNYLNT----CGITSITISH 603 (986)
T ss_dssp TT------------------------------------------TCCHHHHHHHHHHHHH----SCSEEEEECS
T ss_pred cc------------------------------------------CCCHHHHHHHHHHHHh----CCCEEEEEEC
Confidence 44 5666677777777766 5888888885
No 73
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=2.3e-15 Score=132.99 Aligned_cols=158 Identities=19% Similarity=0.318 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC------CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID------SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETL 93 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~------~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~ 93 (415)
-+++|+|+.|+|||||+++|.+.. .++.|.- +....+. .......+.+|+++|...+..+ ....+
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~~~~~Dt~G~~~~~~~-----~~~~~ 81 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGID--FRNKVLD--VDGVKVKLQMWDTAGQERFRSV-----THAYY 81 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCE--EEEEEEE--ETTEEEEEEEEECCCC-------------CCG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeE--EEEEEEE--ECCEEEEEEEEeCCCcHHHHHH-----HHHHc
Confidence 589999999999999999997532 2333321 2111111 1223457899999998877665 34455
Q ss_pred Cchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 94 PHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 94 ~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
.+.. +++++|.+++.+ ++.+..|...+.....
T Consensus 82 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~---------------------------------------------- 114 (180)
T 2g6b_A 82 RDAHALLLLYDVTNKAS-FDNIQAWLTEIHEYAQ---------------------------------------------- 114 (180)
T ss_dssp GGCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSC----------------------------------------------
T ss_pred cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCC----------------------------------------------
Confidence 5555 467888888665 4555556433332210
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.++|+++|+||+|+... +.+..++ ++.++..+|+.++++|++++.+++.+++.+.+.+...
T Consensus 115 ------~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 115 ------HDVALMLLGNKVDSAHE----RVVKRED-------GEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp ------TTCEEEEEEECCSTTSC----CCSCHHH-------HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred ------CCCcEEEEEECcccCcc----cccCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 17899999999999642 2333333 5677888899999999999999999999999887653
No 74
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.60 E-value=6.1e-15 Score=128.52 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=104.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+- ..++.|... ....+.. ......+.+|+++|...+..+... .+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~-----~~~ 77 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCL--DDTTVKFEIWDTAGQERYHSLAPM-----YYR 77 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEE--TTEEEEEEEEEECCSGGGGGGHHH-----HHT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEE--CCEEEEEEEEeCCCcHHhhhhhHH-----hcc
Confidence 47999999999999999999742 223444322 1111111 123467889999998877665322 223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+..
T Consensus 78 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~------------------------------------------------ 108 (170)
T 1r2q_A 78 GAQAAIVVYDITNEES-FARAKNWVKELQRQA------------------------------------------------ 108 (170)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHHHHHHS------------------------------------------------
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHhc------------------------------------------------
Confidence 333 467788887765 455555543332211
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.-++|+++|+||+|+... +....++ ++.+|.++|+.++++|++++.+++.++++|.+.+.
T Consensus 109 ----~~~~~iilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 109 ----SPNIVIALSGNKADLANK----RAVDFQE-------AQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp ----CTTCEEEEEEECGGGGGG----CCSCHHH-------HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred ----CCCCcEEEEEECccCccc----cccCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 017899999999999642 2333333 56788889999999999999999999999987653
No 75
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=3.7e-15 Score=134.15 Aligned_cols=157 Identities=17% Similarity=0.255 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+. ..++.|... ....+. .......+.+|+++|...+..+... .+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~-----~~~ 94 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF--MTKTVP--CGNELHKFLIWDTAGQERFHSLAPM-----YYR 94 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE--EEEEEE--CSSSEEEEEEEEECCSGGGGGGTHH-----HHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE--EEEEEE--eCCEEEEEEEEcCCCchhhHhhhHH-----hhc
Confidence 47999999999999999999753 234445422 111111 1223467899999998877666322 233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+..
T Consensus 95 ~~d~iilV~d~~~~~s-~~~~~~~~~~i~~~~------------------------------------------------ 125 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDS-FYTLKKWVKELKEHG------------------------------------------------ 125 (192)
T ss_dssp TCSEEEEEEETTCTHH-HHHHHHHHHHHHHHS------------------------------------------------
T ss_pred cCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhC------------------------------------------------
Confidence 333 467788888765 555666644332221
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.-++|+++|+||+|+.. .+.+..++ ++.+|.++|+.+++||++++.+++.++++|...+..
T Consensus 126 ----~~~~piiiv~NK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 126 ----PENIVMAIAGNKCDLSD----IREVPLKD-------AKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp ----CTTCEEEEEEECGGGGG----GCCSCHHH-------HHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred ----CCCCcEEEEEECccccc----ccccCHHH-------HHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 01789999999999963 23333333 677888899999999999999999999999887654
No 76
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.60 E-value=4.7e-15 Score=132.46 Aligned_cols=159 Identities=16% Similarity=0.289 Sum_probs=107.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+- +.|+.+.. +. ..+. .......+.+|+++|...|..+ ....+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~--~~-~~~~--~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~ 77 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN--YT-ASFE--IDTQRIELSLWDTSGSPYYDNV-----RPLSYP 77 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE--EE-EEEE--CSSCEEEEEEEEECCSGGGTTT-----GGGGCT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--EE-EEEE--ECCEEEEEEEEECCCChhhhhh-----HHhhcC
Confidence 57899999999999999999753 23344332 21 1111 1223467899999998877666 333445
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
... +++++|.+++.+ ++.+ ..|...+.+.. +
T Consensus 78 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~-------------------------------------------~--- 110 (184)
T 1m7b_A 78 DSDAVLICFDISRPET-LDSVLKKWKGEIQEFC-------------------------------------------P--- 110 (184)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC-------------------------------------------T---
T ss_pred CCcEEEEEEECCCHHH-HHHHHHHHHHHHHHHC-------------------------------------------C---
Confidence 555 467889988776 4444 66754443221 1
Q ss_pred cccccccCCcEEEEEeCcchhhhhhh--------cccCChhhHHHHHHHHHHHHHHhC-CeEEEeccC-CcccHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEK--------DFYYKEEHFDFVQQYIRKFCLKFG-AGLFYTSAK-EDKNCDLLYKY 242 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~--------~~~~~~e~~d~i~q~LR~l~~~~G-asli~tS~k-~~~n~~~l~~~ 242 (415)
++|+++|+||+|+...... .+.++.++ ++.+|.++| ..+++||++ .+.+++.++..
T Consensus 111 -------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~ 176 (184)
T 1m7b_A 111 -------NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ-------GANMAKQIGAATYIECSALQSENSVRDIFHV 176 (184)
T ss_dssp -------TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH-------HHHHHHHHTCSEEEECBTTTBHHHHHHHHHH
T ss_pred -------CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHH-------HHHHHHHcCCcEEEEeeecCCCcCHHHHHHH
Confidence 6899999999999742110 12333333 677888888 689999999 68999999999
Q ss_pred HHHHHhC
Q psy13975 243 LAHRLYG 249 (415)
Q Consensus 243 l~h~l~~ 249 (415)
+.+.++.
T Consensus 177 i~~~~l~ 183 (184)
T 1m7b_A 177 ATLACVN 183 (184)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9887753
No 77
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.60 E-value=3.8e-15 Score=134.28 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=96.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC----CCCCCcEEEEeceeecCCCCccccceEEEEEecCccc
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA 79 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~ 79 (415)
.+++++++..... +++|+|++|+|||||++++.+- ..|+.|... ....+ ....+.+|+++|...
T Consensus 12 ~~l~~~~~~~~~~----ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~------~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 12 DVLASLGLWNKHG----KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAI------GNIKFTTFDLGGHIQ 79 (190)
T ss_dssp ------------C----EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEE------TTEEEEEEECCCSGG
T ss_pred HHHHHhhccCCcc----EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEE------CCEEEEEEECCCCHH
Confidence 4678899988777 8899999999999999999852 233333311 11111 126788999999887
Q ss_pred chhhhhhccCCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 80 HSNLLRFALNQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 80 ~~~Ll~~~l~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
+..+ ...++.+.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 80 ~~~~-----~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------- 121 (190)
T 1m2o_B 80 ARRL-----WKDYFPEVNGIVFLVDAADPER-FDEARVELDALFNIAE-------------------------------- 121 (190)
T ss_dssp GTTS-----GGGGCTTCCEEEEEEETTCGGG-HHHHHHHHHHHHTCGG--------------------------------
T ss_pred HHHH-----HHHHHhcCCEEEEEEECCChHH-HHHHHHHHHHHHcchh--------------------------------
Confidence 7665 333344544 467889888766 4555454322211100
Q ss_pred hccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHH--------HHHhCCeEEEecc
Q psy13975 159 FYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKF--------CLKFGAGLFYTSA 230 (415)
Q Consensus 159 ~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l--------~~~~Gasli~tS~ 230 (415)
..++|+++|+||+|+.. ..+.++ +.+.+... +...+..+++||+
T Consensus 122 -------------------~~~~piilv~NK~Dl~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 122 -------------------LKDVPFVILGNKIDAPN------AVSEAE---LRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp -------------------GTTCCEEEEEECTTSTT------CCCHHH---HHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred -------------------hcCCCEEEEEECCCCcC------CCCHHH---HHHHhCCccccccccccccceEEEEEeEC
Confidence 01789999999999963 122222 22211110 1124567999999
Q ss_pred CCcccHHHHHHHHHHH
Q psy13975 231 KEDKNCDLLYKYLAHR 246 (415)
Q Consensus 231 k~~~n~~~l~~~l~h~ 246 (415)
+++.+++.++++|...
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998754
No 78
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.60 E-value=1.3e-15 Score=135.19 Aligned_cols=157 Identities=14% Similarity=0.164 Sum_probs=105.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||++.|.+.. .++.+... . ..+. .......+.+|+++|...+..+... .+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~ 88 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY--R-KKVV--LDGEEVQIDILDTAGQEDYAAIRDN-----YFR 88 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE--E-EEEE--ETTEEEEEEEEECCCTTCCHHHHHH-----HHH
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE--E-EEEE--ECCEEEEEEEEECCCCcccHHHHHH-----Hhc
Confidence 589999999999999999997432 23333322 1 1111 1123457889999998776655322 222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+....
T Consensus 89 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------------- 121 (187)
T 2a9k_A 89 SGEGFLCVFSITEMES-FAATADFREQILRVKED---------------------------------------------- 121 (187)
T ss_dssp HCSEEEEEEETTCHHH-HHHHHHHHHHHHHHHCC----------------------------------------------
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 333 456788887765 55555664444333211
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+... +.+..++ ++.++.++|+.++++|++++.+++.++++|.+.++.
T Consensus 122 -----~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 122 -----ENVPFLLVGNKSDLEDK----RQVSVEE-------AKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp -----TTCCEEEEEECGGGGGG----CCSCHHH-------HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEECcccccc----CccCHHH-------HHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 17899999999999642 2333333 677888899999999999999999999999988764
No 79
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.59 E-value=3.7e-15 Score=133.55 Aligned_cols=156 Identities=19% Similarity=0.314 Sum_probs=105.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+.. .++.|.- +....+.. ......+.+|+++|...+..+ ....+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~ 93 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTVYR--HDKRIKLQIWDTAGQERYRTI-----TTAYYR 93 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE--EEEEEEEE--TTEEEEEEEEECCSCCSSCCS-----GGGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE--EEEEEEEE--CCeEEEEEEEeCCCcHHHhhh-----HHHhcc
Confidence 489999999999999999997532 2333321 22111111 123467889999998776655 233344
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+...
T Consensus 94 ~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~----------------------------------------------- 125 (189)
T 2gf9_A 94 GAMGFLLMYDIANQES-FAAVQDWATQIKTYSW----------------------------------------------- 125 (189)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSC-----------------------------------------------
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 444 467788887665 4555556443322210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
-++|+++|+||+|+... +.+..++ ++.+|.++|+.++++|++++.+++.++++|.+.+.
T Consensus 126 -----~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 126 -----DNAQVILVGNKCDLEDE----RVVPAED-------GRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp -----TTCEEEEEEECTTCGGG----CCSCHHH-------HHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEECcccccc----cCCCHHH-------HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 17899999999999642 2333333 67788889999999999999999999999988765
No 80
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=137.38 Aligned_cols=159 Identities=14% Similarity=0.209 Sum_probs=105.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-CC--CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-SP--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-~p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+|+|+|+.|+|||||+++|.+-. .. ..+.+.++....+.. ......+.+|+++|...+..+... ++...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~-----~~~~~ 102 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI--QGKRVKLQIWDTAGQERFRTITQS-----YYRSA 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE--TTEEEEEEEECCTTCGGGHHHHHH-----HHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE--CCEEEEEEEEECCCcHhHHHHHHH-----HHhhC
Confidence 479999999999999999997432 11 112111121111111 123467899999998877666322 23333
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|...+.+..
T Consensus 103 d~iilv~D~~~~~s-~~~~~~~~~~i~~~~-------------------------------------------------- 131 (201)
T 2hup_A 103 NGAILAYDITKRSS-FLSVPHWIEDVRKYA-------------------------------------------------- 131 (201)
T ss_dssp SEEEEEEETTBHHH-HHTHHHHHHHHHHHS--------------------------------------------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHHHHhc--------------------------------------------------
Confidence 3 467888887665 555556644332221
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
..++|+++|+||+|+.. .+.+..++ ++.+|.++|+ .+++||++++.+++.++.+|...++.
T Consensus 132 --~~~~piilv~NK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 132 --GSNIVQLLIGNKSDLSE----LREVSLAE-------AQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp --CTTCEEEEEEECTTCGG----GCCSCHHH-------HHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred --CCCCCEEEEEECCcccc----ccccCHHH-------HHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 01789999999999964 23344433 6778888999 99999999999999999999988864
No 81
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.59 E-value=4.2e-15 Score=132.49 Aligned_cols=162 Identities=23% Similarity=0.288 Sum_probs=107.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-C----CCCCcEEEE-eceeecCCC-----CccccceEEEEEecCcccchhhhhhcc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-D----SPEKGLALE-YAYINVSDE-----YREDHTRLGVWILDGEPAHSNLLRFAL 88 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~----~p~~G~il~-~~~~~v~~~-----~~~~~~~l~i~~l~g~~~~~~Ll~~~l 88 (415)
-+|+|+|+.|+|||||+++|.+- . .++.|.-.. ......... .......+.+|+++|...+..+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---- 87 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT---- 87 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH----
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH----
Confidence 48999999999999999999852 2 233333110 001111110 01114578999999988776662
Q ss_pred CCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccc
Q psy13975 89 NQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVS 167 (415)
Q Consensus 89 ~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~ 167 (415)
...+.... +++++|.+++.+ ++.+..|...+......
T Consensus 88 -~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------- 125 (195)
T 3bc1_A 88 -TAFFRDAMGFLLLFDLTNEQS-FLNVRNWISQLQMHAYS---------------------------------------- 125 (195)
T ss_dssp -HHTTTTCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSSS----------------------------------------
T ss_pred -HHHHcCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC----------------------------------------
Confidence 23344444 467888888765 45555554333322210
Q ss_pred cCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 168 VIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 168 lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
.++|+++|+||+|+... +.+..++ ++.++..+|+.++++|++++.+++.+++.|.+.+
T Consensus 126 -----------~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 126 -----------ENPDIVLCGNKSDLEDQ----RAVKEEE-------ARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp -----------SSCCEEEEEECTTCGGG----CCSCHHH-------HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------CCCCEEEEEECcccccc----cccCHHH-------HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 17899999999999642 2333333 6778888999999999999999999999999887
Q ss_pred hC
Q psy13975 248 YG 249 (415)
Q Consensus 248 ~~ 249 (415)
+.
T Consensus 184 ~~ 185 (195)
T 3bc1_A 184 MK 185 (195)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 82
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.59 E-value=1.3e-14 Score=131.26 Aligned_cols=157 Identities=17% Similarity=0.302 Sum_probs=108.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+.. .++.|.- +....+.. ......+.+|+++|...+..+ ....+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~ 79 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTIYR--NDKRIKLQIWDTAGLERYRTI-----TTAYYR 79 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEE--EEEEEEEE--TTEEEEEEEEEECCSGGGHHH-----HHTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee--EEEEEEEE--CCeEEEEEEEECCCchhhcch-----HHHhhc
Confidence 479999999999999999998642 2333432 22111111 123467899999998877666 333445
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+....
T Consensus 80 ~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~------------------------------------------------ 110 (203)
T 1zbd_A 80 GAMGFILMYDITNEES-FNAVQDWSTQIKTYS------------------------------------------------ 110 (203)
T ss_dssp GCSEEEEEEETTCHHH-HHHHHHHHHHHHHHS------------------------------------------------
T ss_pred CCCEEEEEEECcCHHH-HHHHHHHHHHHHHhc------------------------------------------------
Confidence 554 467888888765 555556644332221
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
..++|+++|+||+|+.. .+.+..++ ++.++.++|+.++++|++++.+++.++++|.+.+..
T Consensus 111 ----~~~~piilv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 111 ----WDNAQVLLVGNKCDMED----ERVVSSER-------GRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp ----CSSCEEEEEEECTTCTT----SCCSCHHH-------HHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEEECcccCc----ccccCHHH-------HHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 01789999999999964 22333333 677888899999999999999999999999887764
No 83
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.59 E-value=1.4e-15 Score=132.22 Aligned_cols=156 Identities=14% Similarity=0.162 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++.|.+.. .++.+... . ..+. .......+.+|+++|...+..+... .+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~~~l~D~~G~~~~~~~~~~-----~~~ 74 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY--R-KKVV--LDGEEVQIDILDTAGQEDYAAIRDN-----YFR 74 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE--E-EEEE--ETTEEEEEEEEECCC---CHHHHHH-----HHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE--E-EEEE--ECCEEEEEEEEECCCcchhHHHHHH-----Hhh
Confidence 579999999999999999997432 23333322 1 1110 1123457889999998776655222 222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+....
T Consensus 75 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------------- 107 (168)
T 1u8z_A 75 SGEGFLCVFSITEMES-FAATADFREQILRVKED---------------------------------------------- 107 (168)
T ss_dssp HCSEEEEEEETTCHHH-HHHHHHHHHHHHHHHCC----------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 333 456788887765 55556664444333210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+... +.+..++ ++.++..+|+.++++|++++.+++.+++++...+.
T Consensus 108 -----~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 108 -----ENVPFLLVGNKSDLEDK----RQVSVEE-------AKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp -----TTSCEEEEEECGGGGGG----CCSCHHH-------HHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEECcccccc----CccCHHH-------HHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 17899999999999642 2333333 56777888999999999999999999999988765
No 84
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.59 E-value=2.9e-15 Score=132.48 Aligned_cols=158 Identities=17% Similarity=0.278 Sum_probs=104.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .++.|... ....+. .......+.+|+++|...+..+.. ..+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~-----~~~~ 83 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLA--VNDATVKFEIWDTAGQERYHSLAP-----MYYR 83 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSE--EEEEEE--ETTEEEEEEEEECCCSGGGGGGTH-----HHHT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEE--EEEEEE--ECCEEEEEEEEeCCCChhhhhhhH-----HHhc
Confidence 479999999999999999997532 22323211 111111 112345789999999887766522 2233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+...
T Consensus 84 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 115 (181)
T 2efe_B 84 GAAAAIIVFDVTNQAS-FERAKKWVQELQAQGN----------------------------------------------- 115 (181)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHHHHHHSC-----------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 333 467788887665 4555555433322210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
-++|+++|+||+|+... +.+..++ ++.+|.++|+.++++|++++.+++.++++|.+.+...
T Consensus 116 -----~~~p~i~v~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 116 -----PNMVMALAGNKSDLLDA----RKVTAED-------AQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp -----TTCEEEEEEECTTCTTT----CCSCHHH-------HHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred -----CCCcEEEEEECCccccc----ccCCHHH-------HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 17899999999999642 2333333 6778888999999999999999999999998877653
No 85
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.59 E-value=2.4e-15 Score=135.21 Aligned_cols=157 Identities=20% Similarity=0.301 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .++.|.-.......+ ......+.+|+++|...+..+. ...+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~-----~~~~~ 92 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI----DGKQIKLQIWDTAGQESFRSIT-----RSYYR 92 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE----TTEEEEEEEECCTTGGGTSCCC-----HHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE----CCEEEEEEEEECCCchhhhhhH-----HHHhc
Confidence 479999999999999999998532 122221110011111 1234578899999987765552 22233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.....
T Consensus 93 ~~d~ii~v~d~~~~~s-~~~~~~~l~~i~~~~~----------------------------------------------- 124 (191)
T 2a5j_A 93 GAAGALLVYDITRRET-FNHLTSWLEDARQHSS----------------------------------------------- 124 (191)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSC-----------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 344 467788888665 4555555433322210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+... +.+..++ ++.+|.++|+.+++||++++.+++.++.+|.+.++.
T Consensus 125 -----~~~piilv~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 125 -----SNMVIMLIGNKSDLESR----RDVKREE-------GEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp -----TTCEEEEEEECTTCGGG----CCSCHHH-------HHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEECcccCCc----cccCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 17899999999999642 3344333 577888899999999999999999999999988763
No 86
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=136.40 Aligned_cols=160 Identities=20% Similarity=0.288 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+-.. ++.|. .+....+. .......+.+|+++|...+..+... .+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~-----~~~ 99 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV--DFQMKTLI--VDGERTVLQLWDTAGQERFRSIAKS-----YFR 99 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEE--ETTEEEEEEEEECTTCTTCHHHHHH-----HHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccc--eeEEEEEE--ECCEEEEEEEEECCCCcchhhhHHH-----HHh
Confidence 6899999999999999999975321 22221 11111111 1123456889999998777665222 222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.....
T Consensus 100 ~~d~iilv~d~~~~~s-~~~~~~~~~~i~~~~~----------------------------------------------- 131 (199)
T 2p5s_A 100 KADGVLLLYDVTCEKS-FLNIREWVDMIEDAAH----------------------------------------------- 131 (199)
T ss_dssp HCSEEEEEEETTCHHH-HHTHHHHHHHHHHHC------------------------------------------------
T ss_pred hCCEEEEEEECCChHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 333 466788887665 4555566443332210
Q ss_pred ccccccCCcEEEEEeCcchhhhhh--hcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLE--KDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE--~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+..... ..+.+..+ ..+.+|.++|+.+++||++++.+++.++.+|...+.
T Consensus 132 -----~~~piilv~NK~Dl~~~~~~~~~~~v~~~-------~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 132 -----ETVPIMLVGNKADIRDTAATEGQKCVPGH-------FGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp -------CCEEEEEECGGGHHHHHHTTCCCCCHH-------HHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred -----CCCCEEEEEECcccccccccccccccCHH-------HHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1789999999999975321 12233333 367788889999999999999999999999988775
No 87
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.59 E-value=2.5e-15 Score=130.98 Aligned_cols=155 Identities=18% Similarity=0.322 Sum_probs=102.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++.|.+-. .++.|.- +....+. .......+.+|+++|...+..+. ...+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~-----~~~~~ 76 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD--FLERQIQ--VNDEDVRLMLWDTAGQEEFDAIT-----KAYYR 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSS--EEEEEEE--ETTEEEEEEEECCTTGGGTTCCC-----HHHHT
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEE--EEEEEEE--ECCEEEEEEEEcCCCcHhHHHHH-----HHHhc
Confidence 478999999999999999997532 2222211 1111111 01234578899999977665552 22233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+....
T Consensus 77 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~------------------------------------------------ 107 (168)
T 1z2a_A 77 GAQACVLVFSTTDRES-FEAISSWREKVVAEV------------------------------------------------ 107 (168)
T ss_dssp TCCEEEEEEETTCHHH-HHTHHHHHHHHHHHH------------------------------------------------
T ss_pred CCCEEEEEEECcCHHH-HHHHHHHHHHHHHhC------------------------------------------------
Confidence 333 467788887655 455555543332221
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+... +.+..++ ++.++.++|+.++++|++++.+++.++++|.+.++
T Consensus 108 -----~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 108 -----GDIPTALVQNKIDLLDD----SCIKNEE-------AEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp -----CSCCEEEEEECGGGGGG----CSSCHHH-------HHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEECcccCcc----cccCHHH-------HHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 06899999999999642 2333333 57788889999999999999999999999988775
No 88
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.59 E-value=2.4e-15 Score=130.88 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+- ..++.+.. +. ..+. .......+.+|+++|...+..+... .+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~-~~~~--~~~~~~~~~l~D~~G~~~~~~~~~~-----~~~ 73 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS--YR-KQVE--VDCQQCMLEILDTAGTEQFTAMRDL-----YMK 73 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEE--EE-EEEE--SSSCEEEEEEEEECSSCSSTTHHHH-----HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccce--EE-EEEE--ECCEEEEEEEEECCChHHHHHHHHH-----Hhc
Confidence 47999999999999999999742 22333332 11 1111 1223467889999998766655222 222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 74 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~----------------------------------------------- 105 (167)
T 1c1y_A 74 NGQGFALVYSITAQST-FNDLQDLREQILRVKD----------------------------------------------- 105 (167)
T ss_dssp HCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHC-----------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhC-----------------------------------------------
Confidence 233 356778877655 4555555433332221
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh-CCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF-GAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~-Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
..++|+++|+||+|+... +.+..++ ++.++.++ +..++++|++++.+++.++++|...+.
T Consensus 106 ----~~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 106 ----TEDVPMILVGNKCDLEDE----RVVGKEQ-------GQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp ----CSCCCEEEEEECTTCGGG----CCSCHHH-------HHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred ----cCCCcEEEEEECcccccc----ccCCHHH-------HHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 017899999999999642 3333333 56677777 789999999999999999999987763
No 89
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.59 E-value=8.7e-15 Score=131.28 Aligned_cols=157 Identities=17% Similarity=0.276 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .++.|.-. ....+.. ......+.+|+++|...+..+... ++.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~-----~~~ 87 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF--KIRTIEL--DGKTIKLQIWDTAGQERFRTITSS-----YYR 87 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEE--EEEEEEE--TTEEEEEEEEEECCSGGGCTTHHH-----HHT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE--EEEEEEE--CCEEEEEEEEECCCcHhhhhhHHH-----HHh
Confidence 479999999999999999998532 23334322 2111111 223467899999998877655322 223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+..... .
T Consensus 88 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~---------------------------------------------~- 120 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQES-FNNVKQWLQEIDRYAS---------------------------------------------E- 120 (196)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSC---------------------------------------------T-
T ss_pred hCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcC---------------------------------------------C-
Confidence 333 467788888665 5555556444433221 1
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+... +.+..++ ++.+|..+|+.+++||++++.+++.++..|.+.+..
T Consensus 121 ------~~p~ilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 121 ------NVNKLLVGNKCDLTTK----KVVDYTT-------AKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp ------TCEEEEEEECTTCTTT----CCSCHHH-------HHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ------CCCEEEEEECcccccc----cccCHHH-------HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7899999999998642 3333333 678889999999999999999999999999988875
No 90
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.59 E-value=2.8e-15 Score=131.13 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+.... ..+. ++....+. .......+.+|++.|...+...+ ....+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~ 74 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE--DTYERRIM--VDKEEVTLIVYDIWEQGDAGGWL----QDHCLQ 74 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEE--ETTEEEEEEEECCCCC------------CHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcC--CeeeEEEE--ECCeEEEEEEEECCCccccchhh----hhhhhc
Confidence 36899999999999999999864321 1111 11111111 12234677899999877654421 111223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+...
T Consensus 75 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 106 (169)
T 3q85_A 75 TGDAFLIVFSVTDRRS-FSKVPETLLRLRAGRP----------------------------------------------- 106 (169)
T ss_dssp HCSEEEEEEETTCHHH-HHTHHHHHHHHHHHST-----------------------------------------------
T ss_pred cCCEEEEEEECCChHH-HHHHHHHHHHHHhccc-----------------------------------------------
Confidence 333 467788888765 5555555433322211
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.-++|+++|+||+|+.. .+.+..++ ++.++..+|+.++++|++++.+++.+++.+.+.+.
T Consensus 107 ----~~~~p~ilv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 107 ----HHDLPVILVGNKSDLAR----SREVSLEE-------GRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp ----TSCCCEEEEEECTTCGG----GCCSCHHH-------HHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEeeCcchhh----cccCCHHH-------HHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHH
Confidence 01789999999999863 23444444 67888899999999999999999999999988764
No 91
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.59 E-value=1.2e-15 Score=167.84 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=44.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+++|+|+||+|..| ++++|+|+||||||||+++|+|+.+|++|.+.
T Consensus 686 ~~iL~dVSl~I~~G---eivaIiGpNGSGKSTLLklLaGll~P~sG~I~ 731 (986)
T 2iw3_A 686 KPQITDINFQCSLS---SRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731 (986)
T ss_dssp SCSEEEEEEEEETT---CEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred ceeeeccEEEEcCC---CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 46899999999999 99999999999999999999999999999976
No 92
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.59 E-value=6.2e-15 Score=130.48 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=99.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC--CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
-+++|+|+.|+|||||++++.+-..+. .+... ..+ ............+.+|+++|...+..+ ....+.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~~~d 81 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNF-SANVVVNGATVNLGLWDTAGQEDYNRL-----RPLSYRGAD 81 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC-----------C-BCCCC-------CEEECCCC-CTTTTT-----GGGGGTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeee-eeE-EEEEEECCEEEEEEEEECCCChhhhhh-----HHhhccCCC
Confidence 689999999999999999997432111 11110 011 111111223466789999998877655 233344444
Q ss_pred -hHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 98 -VMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
+++++|.+++.+ ++.+. .|...+.+.. +
T Consensus 82 ~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------~------ 111 (182)
T 3bwd_D 82 VFILAFSLISKAS-YENVSKKWIPELKHYA-------------------------------------------P------ 111 (182)
T ss_dssp EEEEEEETTCHHH-HHHHHHTHHHHHHHHC-------------------------------------------T------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHHhC-------------------------------------------C------
Confidence 467888888766 44443 5644433321 0
Q ss_pred ccccCCcEEEEEeCcchhhhhhh------cccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEK------DFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~------~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+....+. ...+.. ..++.++..+|+ .+++||++++.+++.++++|.+.++
T Consensus 112 ----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 112 ----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITT-------VQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp ----TCCEEEEEECHHHHTCHHHHHHC--CCCCCH-------HHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred ----CCCEEEEEechhhhcCcccccccccCCCCCH-------HHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999653110 001122 236778888897 8999999999999999999988775
No 93
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.59 E-value=1.8e-15 Score=135.46 Aligned_cols=163 Identities=16% Similarity=0.152 Sum_probs=105.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC-------------CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPE-------------KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRF 86 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~-------------~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~ 86 (415)
-+++|+|+.|+|||||++.+.|..... ...+..+....+. ........+.+|+++|+..|..+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~~~~~~~- 92 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG-EVKGFKTRFHLYTVPGQVFYNASRK- 92 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCC-CSSSCEEEEEEEECCSCCSCSHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccc-cccCCceEEEEEeCCChHHHHHHHH-
Confidence 479999999999999999998754322 1222222221110 1223456789999999887776632
Q ss_pred ccCCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCc
Q psy13975 87 ALNQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSS 165 (415)
Q Consensus 87 ~l~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~ 165 (415)
.++.+.. +++++|.+++.. .+....| ..+.+++..+ .
T Consensus 93 ----~~~~~~d~~i~v~D~~~~~~-~~~~~s~-~~l~~~l~~~-----------------------------------~- 130 (198)
T 3t1o_A 93 ----LILRGVDGIVFVADSAPNRL-RANAESM-RNMRENLAEY-----------------------------------G- 130 (198)
T ss_dssp ----HHTTTCCEEEEEEECCGGGH-HHHHHHH-HHHHHHHHHT-----------------------------------T-
T ss_pred ----HHHhcCCEEEEEEECCcchh-hHhHHHH-HHHHHHHHhh-----------------------------------c-
Confidence 2344444 467788875432 2222232 2233333221 0
Q ss_pred cccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHH
Q psy13975 166 VSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLA 244 (415)
Q Consensus 166 ~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~ 244 (415)
. ...++|+++|+||+|+... ...++ ++.+|.++|+ .+++||++++.+++.+++.|.
T Consensus 131 ---~-------~~~~~piilv~NK~Dl~~~------~~~~~-------~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 187 (198)
T 3t1o_A 131 ---L-------TLDDVPIVIQVNKRDLPDA------LPVEM-------VRAVVDPEGKFPVLEAVATEGKGVFETLKEVS 187 (198)
T ss_dssp ---C-------CTTSSCEEEEEECTTSTTC------CCHHH-------HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHH
T ss_pred ---c-------ccCCCCEEEEEEchhcccc------cCHHH-------HHHHHHhcCCceEEEEecCCCcCHHHHHHHHH
Confidence 0 0117899999999999642 33333 6788888999 999999999999999999998
Q ss_pred HHHhC
Q psy13975 245 HRLYG 249 (415)
Q Consensus 245 h~l~~ 249 (415)
..++.
T Consensus 188 ~~i~~ 192 (198)
T 3t1o_A 188 RLVLA 192 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 94
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.59 E-value=1.5e-15 Score=131.93 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-C----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-D----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++.+.+- . .++.+... ...+. .......+.+|+++|...+..+... .+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~l~D~~G~~~~~~~~~~-----~~~ 73 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY---RKEIE--VDSSPSVLEILDTAGTEQFASMRDL-----YIK 73 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE---EEEEE--ETTEEEEEEEEECCCTTCCHHHHHH-----HHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE---EEEEE--ECCEEEEEEEEECCCchhhHHHHHH-----Hhc
Confidence 57999999999999999998742 1 23333211 11111 1123456889999998777665322 222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|..++.+ ++.+..|...+.+....
T Consensus 74 ~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------------- 106 (167)
T 1kao_A 74 NGQGFILVYSLVNQQS-FQDIKPMRDQIIRVKRY---------------------------------------------- 106 (167)
T ss_dssp HCSEEEEEEETTCHHH-HHHHHHHHHHHHHHTTT----------------------------------------------
T ss_pred cCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 222 456778877665 45555554333222210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
.++|+++|+||+|+... +.+..++ ++.++.++|..++++|++++.+++.++++|.+.+
T Consensus 107 -----~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 107 -----EKVPVILVGNKVDLESE----REVSSSE-------GRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp -----SCCCEEEEEECGGGGGG----CCSCHHH-------HHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEECCccccc----ccCCHHH-------HHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 17899999999998632 3333333 5678888899999999999999999999998765
No 95
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.59 E-value=6.5e-15 Score=132.26 Aligned_cols=157 Identities=18% Similarity=0.284 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+.. .++.|... ....+.. ......+.+|+++|...+..+... .+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~-----~~~ 96 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEF--STRTVML--GTAAVKAQIWDTAGLERYRAITSA-----YYR 96 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEE--EEEEEEE--TTEEEEEEEEEESCCCTTCTTHHH-----HHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEEEE--CCEEEEEEEEeCCCchhhhhhhHH-----Hhc
Confidence 479999999999999999998532 23334322 1111111 123467889999998766555222 223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+....
T Consensus 97 ~~d~vi~v~D~~~~~s-~~~~~~~l~~i~~~~------------------------------------------------ 127 (193)
T 2oil_A 97 GAVGALLVFDLTKHQT-YAVVERWLKELYDHA------------------------------------------------ 127 (193)
T ss_dssp TCCEEEEEEETTCHHH-HHTHHHHHHHHHTTS------------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhc------------------------------------------------
Confidence 333 467788887655 444444532221110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
..++|+++|+||+|+... +.+..++ ++.++..+|+.+++||++++.+++.++.+|.+.++.
T Consensus 128 ----~~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 128 ----EATIVVMLVGNKSDLSQA----REVPTEE-------ARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp ----CTTCEEEEEEECGGGGGG----CCSCHHH-------HHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEEECCCcccc----cccCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 017899999999999642 2333333 677888899999999999999999999999888763
No 96
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=134.20 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .|+.+... . ..+. .......+.+|+++|...|..+ ...++.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~ 90 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF--S-AVVS--VDGRPVRLQLCDTAGQDEFDKL-----RPLCYT 90 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--------CCSSEEE--E-EEEE--ETTEEEEEEEEECCCSTTCSSS-----GGGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee--E-EEEE--ECCEEEEEEEEECCCCHHHHHH-----hHhhcC
Confidence 689999999999999999998642 23334322 1 1111 1123457889999998877665 233344
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
+.. +++++|.+++.+ ++.+ ..|...+.... +
T Consensus 91 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------~--- 123 (201)
T 2q3h_A 91 NTDIFLLCFSVVSPSS-FQNVSEKWVPEIRCHC-------------------------------------------P--- 123 (201)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC-------------------------------------------S---
T ss_pred CCcEEEEEEECCCHHH-HHHHHHHHHHHHHHhC-------------------------------------------C---
Confidence 444 467889888766 4444 35644433221 1
Q ss_pred cccccccCCcEEEEEeCcchhhhhhh--------cccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEK--------DFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~--------~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l 243 (415)
++|+++|+||+|+....+. .+.+..++ ++.++..+|. .+++||++++.+++.++++|
T Consensus 124 -------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 189 (201)
T 2q3h_A 124 -------KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA-------AKLLAEEIKAASYIECSALTQKNLKEVFDAA 189 (201)
T ss_dssp -------SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH-------HHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred -------CCCEEEEEECHhhhhchhhhhhhcccccccCCHHH-------HHHHHHhcCCcEEEEEecCCCCCHHHHHHHH
Confidence 6899999999999753111 12233322 6778888898 89999999999999999999
Q ss_pred HHHHhC
Q psy13975 244 AHRLYG 249 (415)
Q Consensus 244 ~h~l~~ 249 (415)
.+.++.
T Consensus 190 ~~~~~~ 195 (201)
T 2q3h_A 190 IVAGIQ 195 (201)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988763
No 97
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.58 E-value=3.7e-15 Score=130.12 Aligned_cols=158 Identities=19% Similarity=0.355 Sum_probs=102.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-C--CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS-P--EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~-p--~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+.|+|||||++.|.+-.. + ..+....+....+. .......+.+|+++|...+..+ ....+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~D~~G~~~~~~~-----~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD--INGKKVKLQIWDTAGQERFRTI-----TTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEE--SSSCEEEEEEECCTTGGGTSCC-----CHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE--ECCEEEEEEEEeCCCChhhhhh-----HHHHhccC
Confidence 4789999999999999999985321 1 11211111111111 1223457889999997766554 22223344
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|...+.+...
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------- 106 (170)
T 1g16_A 77 MGIILVYDITDERT-FTNIKQWFKTVNEHAN------------------------------------------------- 106 (170)
T ss_dssp EEEEEEEETTCHHH-HHTHHHHHHHHHHHSC-------------------------------------------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-------------------------------------------------
Confidence 4 467788887665 4555555433332210
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+.. +....++ ++.++.++|+.++++|++++.+++.++++|.+.+..
T Consensus 107 ---~~~piilv~nK~Dl~~-----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 107 ---DEAQLLLVGNKSDMET-----RVVTADQ-------GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp ---TTCEEEEEEECTTCTT-----CCSCHHH-------HHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---CCCcEEEEEECccCCc-----CccCHHH-------HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1789999999999932 2233333 567788889999999999999999999999888763
No 98
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.58 E-value=3.5e-15 Score=131.37 Aligned_cols=156 Identities=19% Similarity=0.284 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+.. .++.|.-.......+ ......+.+|+++|...+..+... .+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~ 86 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV----SGQKIKLQIWDTAGQERFRAVTRS-----YYR 86 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE----TTEEEEEEEEECTTGGGTCHHHHH-----HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE----CCeEEEEEEEECCCChHhhhhHHH-----Hhc
Confidence 589999999999999999998532 223332110111111 123457889999998776655222 222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+....
T Consensus 87 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~------------------------------------------------ 117 (179)
T 1z0f_A 87 GAAGALMVYDITRRST-YNHLSSWLTDARNLT------------------------------------------------ 117 (179)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHS------------------------------------------------
T ss_pred cCCEEEEEEeCcCHHH-HHHHHHHHHHHHHhc------------------------------------------------
Confidence 333 467788887655 455555543332221
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
+.++|+++|+||+|+.. ++.+..++ ++.++.++|+.++++|++++.+++.++++|.+.++
T Consensus 118 ----~~~~piilv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 118 ----NPNTVIILIGNKADLEA----QRDVTYEE-------AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp ----CTTCEEEEEEECTTCGG----GCCSCHHH-------HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ----CCCCcEEEEEECccccc----ccccCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 01789999999999963 23333333 67788889999999999999999999999988775
No 99
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.58 E-value=4.1e-15 Score=131.19 Aligned_cols=163 Identities=21% Similarity=0.324 Sum_probs=110.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .|+.|.-.......+. ......+.+|+++|...+..+... ++.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~-----~~~ 78 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP---GNLNVTLQIWDIGGQTIGGKMLDK-----YIY 78 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEET---TTEEEEEEEEECTTCCTTCTTHHH-----HHT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeC---CCCEEEEEEEECCCCccccchhhH-----HHh
Confidence 579999999999999999998642 2333321101111111 112467899999998876655222 233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+.....
T Consensus 79 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~--------------------------------------------- 112 (178)
T 2hxs_A 79 GAQGVLLVYDITNYQS-FENLEDWYTVVKKVSEES--------------------------------------------- 112 (178)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred hCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhccc---------------------------------------------
Confidence 443 467889888766 566667765554443211
Q ss_pred ccccccCCc-EEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCCC
Q psy13975 174 ILERNLGVD-IVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFPF 252 (415)
Q Consensus 174 ~l~~nlgvp-iivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~f 252 (415)
.+.| +++|+||+|+... +.+..++ ++.+|.++|+.++++|++++.+++.++++|.+.++..+.
T Consensus 113 -----~~~~~iilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 113 -----ETQPLVALVGNKIDLEHM----RTIKPEK-------HLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp -----TCCCEEEEEEECGGGGGG----CSSCHHH-------HHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred -----CCCCeEEEEEEccccccc----cccCHHH-------HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 0344 8999999999642 3344333 567788889999999999999999999999999987654
No 100
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.58 E-value=1.9e-15 Score=133.36 Aligned_cols=157 Identities=16% Similarity=0.149 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+. ..++.+... .. .+. .......+.+|+++|...+..+... .+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~~-~~~--~~~~~~~~~~~Dt~G~~~~~~~~~~-----~~~ 79 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY--TK-ICS--VDGIPARLDILDTAGQEEFGAMREQ-----YMR 79 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEE--EE-EEE--ETTEEEEEEEEECCCTTTTSCCHHH-----HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceE--EE-EEE--ECCEEEEEEEEECCCchhhHHHHHH-----HHh
Confidence 58999999999999999999753 223334322 11 110 1123457889999998766555222 122
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+...
T Consensus 80 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 111 (181)
T 2fn4_A 80 AGHGFLLVFAINDRQS-FNEVGKLFTQILRVKD----------------------------------------------- 111 (181)
T ss_dssp HCSEEEEEEETTCHHH-HHHHHHHHHHHHHHHT-----------------------------------------------
T ss_pred hCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 233 356778887665 5555555433322211
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
..++|+++|+||+|+... +.+..++ .+.++..+|+.++++|++++.+++.++++|.+.+..
T Consensus 112 ----~~~~piilv~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 112 ----RDDFPVVLVGNKADLESQ----RQVPRSE-------ASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp ----SSCCCEEEEEECGGGGGG----CCSCHHH-------HHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEEECcccccc----cccCHHH-------HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 017899999999999642 3343333 567888899999999999999999999999988764
No 101
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.7e-15 Score=135.90 Aligned_cols=158 Identities=18% Similarity=0.292 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+... ++.|. .+....+. .......+.+|+++|...|..+ ...++.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~ 84 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV--EFATRTLE--IEGKRIKAQIWDTAGQERYRAI-----TSAYYR 84 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CC--SEEEEEEE--ETTEEEEEEEECCTTTTTTTCC-----CGGGTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc--eeEEEEEE--ECCEEEEEEEEECCCccchhhh-----HHHHhc
Confidence 4799999999999999999985321 22221 11111111 1123467899999998777665 333445
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.....
T Consensus 85 ~~d~vilV~D~~~~~s-~~~~~~~l~~i~~~~~----------------------------------------------- 116 (223)
T 3cpj_B 85 GAVGALIVYDISKSSS-YENCNHWLSELRENAD----------------------------------------------- 116 (223)
T ss_dssp TCCEEEEEEC-CCHHH-HHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred cCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhCC-----------------------------------------------
Confidence 554 467889888766 5556666544332210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.++|++||+||+|+... +.+..++ ++.++..+|+.++++|++++.+++.++++|.+.++..
T Consensus 117 -----~~~piilv~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 117 -----DNVAVGLIGNKSDLAHL----RAVPTEE-------SKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp -------CEEEEEECCGGGGGG----CCSCHHH-------HHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred -----CCCeEEEEEECcccccc----cccCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 17899999999999642 3343333 5677888999999999999999999999999998863
No 102
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.58 E-value=7.3e-15 Score=134.43 Aligned_cols=158 Identities=16% Similarity=0.289 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+.. .|+.+.. +. ..+. .......+.+|+++|...|..+ ....+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~--~~-~~~~--~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 98 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN--YT-ASFE--IDTQRIELSLWDTSGSPYYDNV-----RPLSYP 98 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE--EE-EEEE--SSSSEEEEEEEEECCSGGGTTT-----GGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee--EE-EEEE--ECCEEEEEEEEeCCCcHhhhHH-----HHhhcc
Confidence 589999999999999999998532 3343332 21 1111 1223467899999998877666 333445
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
... +++++|.+++.+ ++.+ ..|...+.+.. +
T Consensus 99 ~~d~~ilv~D~~~~~s-~~~~~~~~~~~i~~~~-------------------------------------------~--- 131 (205)
T 1gwn_A 99 DSDAVLICFDISRPET-LDSVLKKWKGEIQEFC-------------------------------------------P--- 131 (205)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC-------------------------------------------T---
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHHHC-------------------------------------------C---
Confidence 554 467889888776 4444 66754443321 0
Q ss_pred cccccccCCcEEEEEeCcchhhhhhh--------cccCChhhHHHHHHHHHHHHHHhC-CeEEEeccC-CcccHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEK--------DFYYKEEHFDFVQQYIRKFCLKFG-AGLFYTSAK-EDKNCDLLYKY 242 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~--------~~~~~~e~~d~i~q~LR~l~~~~G-asli~tS~k-~~~n~~~l~~~ 242 (415)
++|+++|+||+|+....+. .+.++.++ ++.+|.++| ..+++||++ .+.+++.+|.+
T Consensus 132 -------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~ 197 (205)
T 1gwn_A 132 -------NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ-------GANMAKQIGAATYIECSALQSENSVRDIFHV 197 (205)
T ss_dssp -------TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH-------HHHHHHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred -------CCCEEEEEechhhccchhhhhhhcccccCCCCHHH-------HHHHHHHcCCCEEEEeeeccCCcCHHHHHHH
Confidence 6899999999999742110 12233333 677888888 589999999 68999999999
Q ss_pred HHHHHh
Q psy13975 243 LAHRLY 248 (415)
Q Consensus 243 l~h~l~ 248 (415)
+...++
T Consensus 198 l~~~~l 203 (205)
T 1gwn_A 198 ATLACV 203 (205)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988765
No 103
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.58 E-value=2.1e-15 Score=136.71 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=104.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchh-hhhhccCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN-LLRFALNQETL 93 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~-Ll~~~l~~~~~ 93 (415)
-+|+|+|+.|+|||||+++|.|.. .|+.+.-. ....+. .......+.+|++.|...+.. +. ..++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~l~i~Dt~g~~~~~~~~~-----~~~~ 94 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDT--YERRIM--VDKEEVTLVVYDIWEQGDAGGWLR-----DHCL 94 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTE--EEEEEE--ETTEEEEEEEECCCCCSGGGHHHH-----HHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccce--EEEEEE--ECCEEEEEEEEecCCCccchhhhH-----HHhh
Confidence 489999999999999999997632 12222101 111110 112346788999988765543 31 1123
Q ss_pred Cchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 94 PHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 94 ~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
.... +++++|.+++.+ ++.+..|...+.....
T Consensus 95 ~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~---------------------------------------------- 127 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRS-FSKVPETLLRLRAGRP---------------------------------------------- 127 (195)
T ss_dssp HHCSEEEEEEETTCHHH-HHTHHHHHHHHHHHST----------------------------------------------
T ss_pred ccCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC----------------------------------------------
Confidence 3333 466888888766 5556666443322210
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
..++|+++|+||+|+.. .+.+..++ ++.+|..+|+.+++||++++.+++.++++++..+..
T Consensus 128 -----~~~~piilv~nK~Dl~~----~~~v~~~~-------~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 128 -----HHDLPVILVGNKSDLAR----SREVSLEE-------GRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp -----TSCCCEEEEEECTTCTT----TCCSCHHH-------HHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred -----CCCCCEEEEeechhccc----cCCcCHHH-------HHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 01789999999999964 23344333 567788889999999999999999999999988765
No 104
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=1.3e-15 Score=136.82 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEE--EeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS-PEKGLAL--EYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~-p~~G~il--~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+|+|+|+.|+|||||+++|.+... +...... .+....+ ........+.+|+++|...+..+... .+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~~ 96 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV--YRHEKRVKLQIWDTAGQERYRTITTA-----YYRGA 96 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEE--EETTTTEEEEEECHHHHHHCHHHHHH-----HHTTC
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEE--EECCEEEEEEEEeCCChHHHHHHHHH-----HHccC
Confidence 4799999999999999999986332 1111100 0011111 01123467889999987776665322 23333
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|...+.....
T Consensus 97 d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------- 126 (191)
T 3dz8_A 97 MGFILMYDITNEES-FNAVQDWATQIKTYSW------------------------------------------------- 126 (191)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHHHHHHSC-------------------------------------------------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHHHHhcC-------------------------------------------------
Confidence 3 467888888765 4556666544433210
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
-++|+++|+||+|+.. ++....++ ++.++..+|+.++++|++++.+++.++++|.+.++.
T Consensus 127 ---~~~piilv~nK~Dl~~----~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 127 ---DNAQVILVGNKCDMEE----ERVVPTEK-------GQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp ---TTCEEEEEEECTTCGG----GCCSCHHH-------HHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---CCCCEEEEEECCCCcc----ccccCHHH-------HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1789999999999853 23344333 677888899999999999999999999999888763
No 105
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=6.7e-15 Score=135.87 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC------CCCcEEEEeceeecCCCCccccceEEEEEecCccc-chhhhhhccCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS------PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HSNLLRFALNQET 92 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~------p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~~Ll~~~l~~~~ 92 (415)
-+|+|||+.|+|||||++++.|... +..|. ++....+. .......+.+|++.|... +..+ ...+
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~--d~~~~~i~--~~~~~~~l~~~Dt~g~~~~~~~l-----~~~~ 108 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE--DTYERTLM--VDGESATIILLDMWENKGENEWL-----HDHC 108 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCT--TEEEEEEE--ETTEEEEEEEECCTTTTHHHHHH-----HHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccce--eeEEEEEE--ECCeeeEEEEeecCCCcchhhhH-----HHHH
Confidence 4799999999999999999986422 11121 01011110 112334567888877654 3333 3334
Q ss_pred CCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCC
Q psy13975 93 LPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPG 171 (415)
Q Consensus 93 ~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~ 171 (415)
+.... +++++|++++.+ ++.+..|...+.+...
T Consensus 109 ~~~a~~~ilVydvt~~~s-f~~~~~~~~~l~~~~~--------------------------------------------- 142 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRAS-FEKASELRIQLRRARQ--------------------------------------------- 142 (211)
T ss_dssp CCCCSEEEEEEETTCHHH-HHHHHHHHHHHHTSGG---------------------------------------------
T ss_pred HhhCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC---------------------------------------------
Confidence 55444 467888888766 5566666433221110
Q ss_pred ccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 172 EGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 172 e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.-++|+++|+||+|+.. .+.+..++ .+.+|..+|+.+++|||+++.|++.+|+.|+..+.
T Consensus 143 ------~~~~piilVgNK~DL~~----~r~v~~~e-------~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 143 ------TEDIPIILVGNKSDLVR----CREVSVSE-------GRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp ------GTTSCEEEEEECTTCGG----GCCSCHHH-------HHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ------CCCCcEEEEEEChHHhc----CceEeHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 01789999999999964 23344333 45677888999999999999999999999988764
No 106
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=5.8e-15 Score=132.70 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=107.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .|+.|... . ..+. .......+.+|+++|...+..+ ...++.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~ 88 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY--A-VSVT--VGGKQYLLGLYDTAGQEDYDRL-----RPLSYP 88 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE--E-EEEE--SSSCEEEEEEECCCCSSSSTTT-----GGGGCT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee--E-EEEE--ECCEEEEEEEEECCCCcchhHH-----HHHhcC
Confidence 489999999999999999997432 23333211 0 1111 1223467889999998877665 333445
Q ss_pred chh-hHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
+.. +++++|.+++.+ ++.+. .|...+.+.. +
T Consensus 89 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------~--- 121 (194)
T 2atx_A 89 MTDVFLICFSVVNPAS-FQNVKEEWVPELKEYA-------------------------------------------P--- 121 (194)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHS-------------------------------------------T---
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC-------------------------------------------C---
Confidence 555 467889888766 44443 6644443321 1
Q ss_pred cccccccCCcEEEEEeCcchhhhhhh--------cccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEK--------DFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~--------~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l 243 (415)
++|+++|+||+|+....+. .+.+..+ .++.++.++|+ .+++||++++.+++.++++|
T Consensus 122 -------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 122 -------NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVE-------QGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp -------TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHH-------HHHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred -------CCCEEEEEEChhhcccccchhhcccccCcccCHH-------HHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 6899999999999753211 1223333 36778888898 89999999999999999999
Q ss_pred HHHHh
Q psy13975 244 AHRLY 248 (415)
Q Consensus 244 ~h~l~ 248 (415)
.+.++
T Consensus 188 ~~~i~ 192 (194)
T 2atx_A 188 IIAIL 192 (194)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98876
No 107
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=135.99 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=106.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||++.|.+- +.++.+... . ..+. .......+.+|+++|...+..+... ++.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~ 84 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY--R-KKVV--LDGEEVQIDILDTAGQEDYAAIRDN-----YFR 84 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE--E-EEEE--ETTEEEEEEEEECCCTTCCHHHHHH-----HHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE--E-EEEE--ECCEEEEEEEEcCCChhhhHHHHHH-----HHh
Confidence 48999999999999999999743 233444322 1 1111 1123457889999998777665322 222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+....
T Consensus 85 ~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------------- 117 (206)
T 2bov_A 85 SGEGFLCVFSITEMES-FAATADFREQILRVKED---------------------------------------------- 117 (206)
T ss_dssp HCSEEEEEEETTCHHH-HHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred hCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 333 456788887765 55556664443333210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+... +.+..++ ++.++..+|+.++++|++++.+++.++.+|.+.+..
T Consensus 118 -----~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 118 -----ENVPFLLVGNKSDLEDK----RQVSVEE-------AKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp -----SCCCEEEEEECTTCGGG----CCSCHHH-------HHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEeccCcccc----ccccHHH-------HHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 17899999999999642 2333333 577778889999999999999999999999988865
No 108
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.57 E-value=6.7e-15 Score=130.54 Aligned_cols=161 Identities=18% Similarity=0.230 Sum_probs=106.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+- ..++.+... . ..+. .......+.+|+++|...+..+ ....+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~ 75 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY--S-ANVM--VDGKPVNLGLWDTAGQEDYDRL-----RPLSYP 75 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE--E-EEEE--ETTEEEEEEEECCCCSGGGTTT-----GGGGCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee--E-EEEE--ECCEEEEEEEEECCCCHhHHHH-----HHHhcc
Confidence 57999999999999999999742 223333321 1 1111 1223467889999998877655 233344
Q ss_pred chh-hHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
... +++++|.+++.+ ++.+. .|...+.+.. +
T Consensus 76 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------~--- 108 (186)
T 1mh1_A 76 QTDVSLICFSLVSPAS-FENVRAKWYPEVRHHC-------------------------------------------P--- 108 (186)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHS-------------------------------------------T---
T ss_pred CCcEEEEEEECCChhh-HHHHHHHHHHHHHHhC-------------------------------------------C---
Confidence 444 467888888766 44443 5644333221 0
Q ss_pred cccccccCCcEEEEEeCcchhhhhhh--------cccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEK--------DFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~--------~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l 243 (415)
++|+++|+||+|+....+. .+.+..+ ..+.++..+|+ .++++|++++.+++.++.++
T Consensus 109 -------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 109 -------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP-------QGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp -------TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHH-------HHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred -------CCCEEEEeEcccccccchhhhhhcccccccCCHH-------HHHHHHHhcCCcEEEEecCCCccCHHHHHHHH
Confidence 6899999999999753111 0122222 35678888897 89999999999999999999
Q ss_pred HHHHhCCC
Q psy13975 244 AHRLYGFP 251 (415)
Q Consensus 244 ~h~l~~~~ 251 (415)
.+.++.-+
T Consensus 175 ~~~~~~~~ 182 (186)
T 1mh1_A 175 IRAVLCPP 182 (186)
T ss_dssp HHHHSCCC
T ss_pred HHHHhccc
Confidence 99887543
No 109
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.57 E-value=1.4e-15 Score=138.14 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=99.5
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccc
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~ 80 (415)
++++++|..... +++|+|++|||||||+++|.+- ..|+.|. ....+. . ....+.+|+++|+..+
T Consensus 15 ~l~~~~~~~~~~----ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~----~~~~~~---~-~~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 15 VLQFLGLYKKTG----KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELT---I-AGMTFTTFDLGGHIQA 82 (198)
T ss_dssp HHHHHTCTTCCE----EEEEEEETTSSHHHHHHHHSCC------CCCCC----SCEEEE---E-TTEEEEEEEECC----
T ss_pred HHHHhhccCCCc----EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCc----eeEEEE---E-CCEEEEEEECCCcHhh
Confidence 566777776666 7899999999999999999863 2222222 111110 0 1257889999998877
Q ss_pred hhhhhhccCCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhh
Q psy13975 81 SNLLRFALNQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSF 159 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~ 159 (415)
..+ ...++.+.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 83 ~~~-----~~~~~~~~d~~i~v~D~~~~~s-~~~~~~~~~~~~~~~~--------------------------------- 123 (198)
T 1f6b_A 83 RRV-----WKNYLPAINGIVFLVDCADHER-LLESKEELDSLMTDET--------------------------------- 123 (198)
T ss_dssp CCG-----GGGGGGGCSEEEEEEETTCGGG-HHHHHHHHHHHHTCGG---------------------------------
T ss_pred HHH-----HHHHHhcCCEEEEEEECCCHHH-HHHHHHHHHHHHhCcc---------------------------------
Confidence 665 333444554 467888888766 4555444322211100
Q ss_pred ccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH-----------------hC
Q psy13975 160 YLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK-----------------FG 222 (415)
Q Consensus 160 ~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~-----------------~G 222 (415)
..++|+++|+||+|+.. ..+.++ ++.++.. .+
T Consensus 124 ------------------~~~~piilv~NK~Dl~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 124 ------------------IANVPILILGNKIDRPE------AISEER-------LREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp ------------------GTTSCEEEEEECTTSTT------CCCHHH-------HHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred ------------------cCCCcEEEEEECCCccc------cCCHHH-------HHHHhCcccccccccccccccccCce
Confidence 01789999999999953 223333 2333321 35
Q ss_pred CeEEEeccCCcccHHHHHHHHHHH
Q psy13975 223 AGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 223 asli~tS~k~~~n~~~l~~~l~h~ 246 (415)
..+++|||+++.+++.++++|...
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999999754
No 110
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-15 Score=161.94 Aligned_cols=165 Identities=16% Similarity=0.103 Sum_probs=94.5
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc---cchh
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP---AHSN 82 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~---~~~~ 82 (415)
|++++ .+.+| ++++|+|+||||||||+++|+|+.+|+.|.+. . ... .... +. .+.|.. .+..
T Consensus 94 l~~l~-~~~~G---ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~---~---~~~-~~~~--~~--~~~g~~~~~~~~~ 158 (608)
T 3j16_B 94 LHRLP-TPRPG---QVLGLVGTNGIGKSTALKILAGKQKPNLGRFD---D---PPE-WQEI--IK--YFRGSELQNYFTK 158 (608)
T ss_dssp EECCC-CCCTT---SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTC---C---SSC-HHHH--HH--HTTTSTHHHHHHH
T ss_pred ecCCC-CCCCC---CEEEEECCCCChHHHHHHHHhcCCCCCCceEe---c---ccc-hhhh--hh--eecChhhhhhhhH
Confidence 44444 46789 99999999999999999999999999999731 0 000 0000 00 000000 0000
Q ss_pred hh----hhccCCCCCCch---------hhHHHH--hcCC----chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHH
Q psy13975 83 LL----RFALNQETLPHT---------MVMLVV--SMTT----PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKL 143 (415)
Q Consensus 83 Ll----~~~l~~~~~~~~---------~v~~~~--d~~~----p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArA 143 (415)
+. .....+.++... .+...+ .... ...+++.++. ...+++.+..| |+|||||++||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~L--SgGe~Qrv~iAra 235 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL-ENVLKRDIEKL--SGGELQRFAIGMS 235 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTC-TGGGGSCTTTC--CHHHHHHHHHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCC-cchhCCChHHC--CHHHHHHHHHHHH
Confidence 00 000000111100 111111 1111 1122333332 12233444445 9999999999999
Q ss_pred hhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC
Q psy13975 144 LTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA 223 (415)
Q Consensus 144 l~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga 223 (415)
+..++..+++|||+ .++|.+....+.+.++++.. .|.
T Consensus 236 L~~~p~llllDEPt------------------------------------------s~LD~~~~~~l~~~l~~l~~-~g~ 272 (608)
T 3j16_B 236 CVQEADVYMFDEPS------------------------------------------SYLDVKQRLNAAQIIRSLLA-PTK 272 (608)
T ss_dssp HHSCCSEEEEECTT------------------------------------------TTCCHHHHHHHHHHHHGGGT-TTC
T ss_pred HHhCCCEEEEECcc------------------------------------------cCCCHHHHHHHHHHHHHHHh-CCC
Confidence 99888877777764 46677788888889998865 488
Q ss_pred eEEEeccC
Q psy13975 224 GLFYTSAK 231 (415)
Q Consensus 224 sli~tS~k 231 (415)
+++++||.
T Consensus 273 tvi~vtHd 280 (608)
T 3j16_B 273 YVICVEHD 280 (608)
T ss_dssp EEEEECSC
T ss_pred EEEEEeCC
Confidence 99999954
No 111
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=131.35 Aligned_cols=156 Identities=19% Similarity=0.345 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+.. .++.|.-.......+ ......+.+|++.|...+..+... .+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~l~l~Dt~G~~~~~~~~~~-----~~~ 97 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL----RGKKIRLQIWDTAGQERFNSITSA-----YYR 97 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE----TTEEEEEEEEEECCSGGGHHHHHH-----HHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE----CCeEEEEEEEeCCCcHHHHHHHHH-----Hhc
Confidence 369999999999999999998642 234443221111111 123467899999998877665222 223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.....
T Consensus 98 ~~d~iilV~D~~~~~s-~~~~~~~~~~i~~~~~----------------------------------------------- 129 (192)
T 2il1_A 98 SAKGIILVYDITKKET-FDDLPKWMKMIDKYAS----------------------------------------------- 129 (192)
T ss_dssp HCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSC-----------------------------------------------
T ss_pred CCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 333 467788888665 5555666433322210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh-CCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF-GAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~-Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+... +.+..++ ++.++.++ +..+++||++++.+++.++++|.+.++
T Consensus 130 -----~~~piilV~NK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 130 -----EDAELLLVGNKLDCETD----REITRQQ-------GEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp -----TTCEEEEEEECGGGGGG----CCSCHHH-------HHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEECcccccc----cccCHHH-------HHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 17899999999999642 3344333 56677764 789999999999999999999988775
No 112
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.57 E-value=5.8e-15 Score=129.99 Aligned_cols=156 Identities=19% Similarity=0.276 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++.|.+-. .++.|. ++....+. .......+.+|+++|...+..+... .+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~Dt~G~~~~~~~~~~-----~~~ 85 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI--DFLSKTMY--LEDRTVRLQLWDTAGQERFRSLIPS-----YIR 85 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSE--EEEEEEEE--ETTEEEEEEEEEECCSGGGGGGSHH-----HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee--EEEEEEEE--ECCeEEEEEEEECCCcHHHHHHHHH-----Hhc
Confidence 479999999999999999997421 233332 12211111 1123457899999998877665322 222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.....
T Consensus 86 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~----------------------------------------------- 117 (179)
T 2y8e_A 86 DSTVAVVVYDITNTNS-FHQTSKWIDDVRTERG----------------------------------------------- 117 (179)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHT-----------------------------------------------
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 333 467788877655 4555555433332210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+... +.+..++ .+.++..+|+.++.+|++++.+++.++++|.+.+.
T Consensus 118 -----~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 118 -----SDVIIMLVGNKTDLSDK----RQVSTEE-------GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp -----TSSEEEEEEECGGGGGG----CCSCHHH-------HHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred -----CCCcEEEEEECCccccc----CcCCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 17899999999999642 2333333 56677788999999999999999999999987654
No 113
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.57 E-value=2.4e-15 Score=134.62 Aligned_cols=166 Identities=15% Similarity=0.235 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC-----CcEEEEeceeecCCCC-ccccceEEEEEecCcccchhhhhhccCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPE-----KGLALEYAYINVSDEY-REDHTRLGVWILDGEPAHSNLLRFALNQETL 93 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~-----~G~il~~~~~~v~~~~-~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~ 93 (415)
-+++|+|++|||||||+++|.+...+. .+.+..+....+.... ......+.+|++.|...|..+. +.++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-----~~~~ 77 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH-----PHFM 77 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS-----HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh-----HHHc
Confidence 479999999999999999999853221 1111222222221100 1235678999999987776652 2222
Q ss_pred Cchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 94 PHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 94 ~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
.+.. +++++|++++..-++.+..|...+.... +
T Consensus 78 ~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-------------------------------------------~--- 111 (184)
T 2zej_A 78 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-------------------------------------------S--- 111 (184)
T ss_dssp HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-------------------------------------------T---
T ss_pred cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-------------------------------------------C---
Confidence 3333 3456788776433555666643332211 0
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe----EEEeccCCcc-cHHHHHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG----LFYTSAKEDK-NCDLLYKYLAHRL 247 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas----li~tS~k~~~-n~~~l~~~l~h~l 247 (415)
++|+++|+||+|+... +. ..+.+....+.+|.++|+. +++|||+++. +++.|++.+.+.+
T Consensus 112 -------~~piilv~nK~Dl~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 112 -------SSPVILVGTHLDVSDE----KQ----RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp -------TCEEEEEEECGGGCCH----HH----HHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred -------CCcEEEEEECCCcccc----hh----hHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 6899999999998532 10 1112233456777778886 8999999996 9999999999888
Q ss_pred hCCC
Q psy13975 248 YGFP 251 (415)
Q Consensus 248 ~~~~ 251 (415)
..+.
T Consensus 177 ~~~~ 180 (184)
T 2zej_A 177 LNFK 180 (184)
T ss_dssp HCC-
T ss_pred hccc
Confidence 7653
No 114
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.57 E-value=1.7e-14 Score=127.32 Aligned_cols=162 Identities=18% Similarity=0.254 Sum_probs=99.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+.. .|+.|. ++....+. ........+.+|+++|...+..+ ....+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~ 80 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA--DFLTKEVT-VDGDKVATMQVWDTAGQERFQSL-----GVAFYR 80 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCC--SCEEEEEC-CSSSCCEEEEEECCC---------------CCST
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccce--EEEEEEEE-EcCCcEEEEEEEECCCChHhhhh-----hHHHhh
Confidence 589999999999999999997532 122221 11111111 11123467889999998777665 344555
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.......
T Consensus 81 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~--------------------------------------------- 114 (182)
T 1ky3_A 81 GADCCVLVYDVTNASS-FENIKSWRDEFLVHANVN--------------------------------------------- 114 (182)
T ss_dssp TCCEEEEEEETTCHHH-HHTHHHHHHHHHHHHCCS---------------------------------------------
T ss_pred cCCEEEEEEECCChHH-HHHHHHHHHHHHHHhccc---------------------------------------------
Confidence 555 467888888765 566666654444333110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHH-HhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCL-KFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~-~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
...++|+++|+||+|+... .+.+..++ ++.++. ..+..+++||++++.+++.++++|.+.++
T Consensus 115 ---~~~~~p~ilv~nK~Dl~~~---~~~v~~~~-------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 115 ---SPETFPFVILGNKIDAEES---KKIVSEKS-------AQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp ---CTTTCCEEEEEECTTSCGG---GCCSCHHH-------HHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ---CcCCCcEEEEEECCccccc---cccCCHHH-------HHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0117899999999998532 22333333 456666 45678999999999999999999988775
No 115
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.57 E-value=6.5e-15 Score=133.77 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=107.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+-. .++.|.- +....+. .......+.+|+++|...+..+ ....+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~ 79 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVD--FKIKTVE--LDGKTVKLQIWDTAGQERFRTI-----TSSYYR 79 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCC--EEEEEEE--ETTEEEEEEEECCTTTTTTTCC-----CGGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEE--ECCEEEEEEEEeCCChHHHHHH-----HHHhcc
Confidence 489999999999999999997532 2333321 1111111 0123457899999998777655 333444
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.....
T Consensus 80 ~~d~vilv~d~~~~~s-~~~~~~~~~~i~~~~~----------------------------------------------- 111 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQES-FNGVKMWLQEIDRYAT----------------------------------------------- 111 (206)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHHHHHHSC-----------------------------------------------
T ss_pred CCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 444 467889888765 5556666443332210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+... +.+..+. ++.++..+|+.++++|++++.+++.++..|.+.+..
T Consensus 112 -----~~~piilv~nK~Dl~~~----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 112 -----STVLKLLVGNKCDLKDK----RVVEYDV-------AKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp -----TTCEEEEEEECTTCTTT----CCSCHHH-------HHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEECCCCccc----cccCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 16899999999999642 2333333 567788899999999999999999999999988874
No 116
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=135.01 Aligned_cols=159 Identities=14% Similarity=0.202 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC---CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSP---EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p---~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+|+|+|+.|+|||||+++|.+-... ..+....+....+. .......+.+|+++|...+..+ ....+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~l~l~Dt~G~~~~~~~-----~~~~~~~~ 98 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN--VGGKTVKLQIWDTAGQERFRSV-----TRSYYRGA 98 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEE--ETTEEEEEEEECCTTHHHHSCC-----CHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEE--ECCeeeEEEEEcCCCcHhHHHH-----HHHHhccC
Confidence 48999999999999999999864211 11111111111111 1123467889999997766554 22223334
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|...+.....
T Consensus 99 d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~------------------------------------------------- 128 (200)
T 2o52_A 99 AGALLVYDITSRET-YNSLAAWLTDARTLAS------------------------------------------------- 128 (200)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHHHHHHTC-------------------------------------------------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHHHHhcC-------------------------------------------------
Confidence 4 467788888765 4555555433322210
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+.. ++.+..++ ++.+|..+|+.+++||++++.+++.++.+|.+.++.
T Consensus 129 ---~~~piilv~nK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 129 ---PNIVVILCGNKKDLDP----EREVTFLE-------ASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp ---TTCEEEEEEECGGGGG----GCCSCHHH-------HHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ---CCCcEEEEEECCCccc----ccccCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1789999999999953 23343333 567888899999999999999999999999988764
No 117
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.57 E-value=3.7e-15 Score=133.79 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-C----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-I----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+ . ..|+.+. |. ..+. .......+.+|++.|...+.. +.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~---~~-~~~~--~~~~~~~l~i~Dt~G~~~~~~----------~~ 84 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGR---FK-KEIV--VDGQSYLLLIRDEGGPPELQF----------AA 84 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEE---EE-EEEE--ETTEEEEEEEEECSSSCCHHH----------HH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcce---EE-EEEE--ECCEEEEEEEEECCCChhhhe----------ec
Confidence 5899999999999999988763 3 3344332 21 1111 122346788999999876541 22
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.....
T Consensus 85 ~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~----------------------------------------------- 116 (184)
T 3ihw_A 85 WVDAVVFVFSLEDEIS-FQTVYNYFLRLCSFRN----------------------------------------------- 116 (184)
T ss_dssp HCSEEEEEEETTCHHH-HHHHHHHHHHHHTTSC-----------------------------------------------
T ss_pred CCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 233 467888888766 5555556443322210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-CeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-AGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-asli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
..++|+++|+||+|+... ..+.+..++ ++.+|.++| +.+++||++++.+++.+|..|...++.
T Consensus 117 ----~~~~piilv~nK~Dl~~~--~~~~v~~~~-------~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 117 ----ASEVPMVLVGTQDAISAA--NPRVIDDSR-------ARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp ----GGGSCEEEEEECTTCBTT--BCCCSCHHH-------HHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEEECcccccc--cccccCHHH-------HHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 017899999999998631 233444444 678888887 789999999999999999999887753
No 118
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=134.66 Aligned_cols=160 Identities=19% Similarity=0.267 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .++.+... . ..+. .......+.+|+++|...+..+ ....+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~l~l~Dt~G~~~~~~~-----~~~~~~ 104 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY--M-VNLQ--VKGKPVHLHIWDTAGQDDYDRL-----RPLFYP 104 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE--E-EEEE--ETTEEEEEEEEEC--------------------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE--E-EEEE--ECCEEEEEEEEECCCchhhhHH-----HHHHhc
Confidence 489999999999999999998632 23333211 1 1111 1123457889999998877665 444555
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
... +++++|.+++.+ ++.+ ..|...+.+.. +
T Consensus 105 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------~ 137 (214)
T 2j1l_A 105 DASVLLLCFDVTSPNS-FDNIFNRWYPEVNHFC----------------------------------------------K 137 (214)
T ss_dssp CEEEEEEEEETTCHHH-HHHHHHTHHHHHHHHC----------------------------------------------S
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHHhC----------------------------------------------C
Confidence 555 467889888766 4444 35644433221 0
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhc--------ccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKD--------FYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~--------~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l 243 (415)
++|+++|+||+|+....+.. +.++.+ .++.++.++|+ .+++||++++.+++.++..|
T Consensus 138 -------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l 203 (214)
T 2j1l_A 138 -------KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYH-------RGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203 (214)
T ss_dssp -------SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHH-------HHHHHHHHTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred -------CCCEEEEEEChhhhccchhhhhhcccccCcccHH-------HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 68999999999997531110 122222 36788888998 89999999999999999999
Q ss_pred HHHHhCC
Q psy13975 244 AHRLYGF 250 (415)
Q Consensus 244 ~h~l~~~ 250 (415)
...++..
T Consensus 204 ~~~~~~~ 210 (214)
T 2j1l_A 204 AEVALSS 210 (214)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9888753
No 119
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.56 E-value=3.2e-15 Score=134.00 Aligned_cols=157 Identities=22% Similarity=0.318 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-C----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccch-hhhhhccCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-D----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS-NLLRFALNQETL 93 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~-~Ll~~~l~~~~~ 93 (415)
-+|+|+|+.|+|||||+++|.+- . .++.|.- +....+. .......+.+|+++|...+. .+... ++
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~-----~~ 91 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD--FRERAVD--IDGERIKIQLWDTAGQERFRKSMVQH-----YY 91 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCC--EEEEEEE--ETTEEEEEEEEECCCSHHHHTTTHHH-----HH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceE--EEEEEEE--ECCEEEEEEEEECCCchhhhhhhhHH-----Hh
Confidence 48999999999999999999742 2 2233321 1111111 01234678999999987665 44221 23
Q ss_pred Cchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 94 PHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 94 ~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
.... +++++|.+++.+ ++.+..|...+.+...
T Consensus 92 ~~~d~iilv~D~~~~~s-~~~~~~~~~~i~~~~~---------------------------------------------- 124 (189)
T 1z06_A 92 RNVHAVVFVYDMTNMAS-FHSLPAWIEECKQHLL---------------------------------------------- 124 (189)
T ss_dssp TTCCEEEEEEETTCHHH-HHTHHHHHHHHHHHCC----------------------------------------------
T ss_pred cCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcC----------------------------------------------
Confidence 3333 467888888766 4555566544433321
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCc---ccHHHHHHHHHHHHh
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKED---KNCDLLYKYLAHRLY 248 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~---~n~~~l~~~l~h~l~ 248 (415)
..++|+++|+||+|+... +.+..++ ++.+|..+|+.++++|++++ .+++.++.+|...+.
T Consensus 125 -----~~~~piilv~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 125 -----ANDIPRILVGNKCDLRSA----IQVPTDL-------AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp -----CSCCCEEEEEECTTCGGG----CCSCHHH-------HHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred -----CCCCCEEEEEECcccccc----ceeCHHH-------HHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 017899999999999642 2333333 57788889999999999999 999999999976653
No 120
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.56 E-value=3.1e-15 Score=135.30 Aligned_cols=170 Identities=17% Similarity=0.161 Sum_probs=104.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecC-CCCccccceEEEEEecCcccchhhhhhccCCCCCCchh
Q psy13975 19 IGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVS-DEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM 97 (415)
Q Consensus 19 ~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~-~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~ 97 (415)
.-+++|+|+.|+|||||++.+.+...+......++....+. .........+.+|+++|+..|..+.-. ...++.++.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--~~~~~~~~~ 97 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD--YEMIFRGTG 97 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC--HHHHHHTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh--cccccccCC
Confidence 35899999999999999999988654432221111111110 001134467899999998876555200 012233344
Q ss_pred -hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccccc
Q psy13975 98 -VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176 (415)
Q Consensus 98 -v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~ 176 (415)
+++++|.+++ ..+.+..|...+.+.....
T Consensus 98 ~~i~v~d~~~~--~~~~~~~~~~~l~~~~~~~------------------------------------------------ 127 (196)
T 3llu_A 98 ALIYVIDAQDD--YMEALTRLHITVSKAYKVN------------------------------------------------ 127 (196)
T ss_dssp EEEEEEETTSC--CHHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred EEEEEEECCCc--hHHHHHHHHHHHHHHHhcC------------------------------------------------
Confidence 4677888775 2334444433333321110
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHH----HhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCL----KFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~----~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
-++|+++|+||+|+....+. .+.+........+.+|. .+++.+++||+++ .+++.+|..+++.+
T Consensus 128 --~~~piilv~nK~Dl~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 128 --PDMNFEVFIHKVDGLSDDHK----IETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp --TTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred --CCCcEEEEEeccccCchhhh----hHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 17899999999999753111 01223333444677777 7789999999999 99999999998765
No 121
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=132.33 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=105.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+- +.++.|..+ . ..+. .......+.+|+++|...+..+.. ++.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~------~~~ 90 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY--S-SEET--VDHQPVHLRVMDTADLDTPRNCER------YLN 90 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE--E-EEEE--ETTEEEEEEEEECCC---CCCTHH------HHT
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee--e-EEEE--ECCEEEEEEEEECCCCCcchhHHH------HHh
Confidence 58999999999999999998742 234444322 1 1111 122346788999999876655421 223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+.....
T Consensus 91 ~~~~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~--------------------------------------------- 124 (187)
T 3c5c_A 91 WAHAFLVVYSVDSRQS-FDSSSSYLELLALHAKET--------------------------------------------- 124 (187)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred hCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhhcc---------------------------------------------
Confidence 333 467888888766 666777765555443211
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEecc-CCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSA-KEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~-k~~~n~~~l~~~l~h~l~ 248 (415)
.-++|+++|+||+|+.. .+.+..++ ++.+|.++|+.+++||+ +++.+++.+++.|...+.
T Consensus 125 ----~~~~piilv~nK~Dl~~----~~~v~~~~-------~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 125 ----QRSIPALLLGNKLDMAQ----YRQVTKAE-------GVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp ----CCCCCEEEEEECGGGGG----GCSSCHHH-------HHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEEECcchhh----cCccCHHH-------HHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 01789999999999953 23344433 67788889999999999 899999999999988764
No 122
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.56 E-value=1.3e-14 Score=127.86 Aligned_cols=160 Identities=17% Similarity=0.250 Sum_probs=106.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .|+.|.- +....+. .......+.+|+++|...+..+. ...+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~-----~~~~~ 78 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE--FLNKDLE--VDGHFVTMQIWDTAGQERFRSLR-----TPFYR 78 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEE--EEEEEEE--ETTEEEEEEEEECCCCGGGHHHH-----GGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee--EEEEEEE--ECCEEEEEEEEeCCCchhhhhhH-----HHHHh
Confidence 479999999999999999997432 2333331 2111111 11234578999999988776663 22334
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.......
T Consensus 79 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~--------------------------------------------- 112 (177)
T 1wms_A 79 GSDCCLLTFSVDDSQS-FQNLSNWKKEFIYYADVK--------------------------------------------- 112 (177)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHTCS---------------------------------------------
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHHcccc---------------------------------------------
Confidence 444 467788888765 555666655554433211
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHH-HhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCL-KFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~-~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
...++|+++|+||+|+.. +....++ ++.+|. ..+..++.+|++++.+++.+++++.+.++.
T Consensus 113 ---~~~~~p~i~v~nK~Dl~~-----~~~~~~~-------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 113 ---EPESFPFVILGNKIDISE-----RQVSTEE-------AQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp ---CTTTSCEEEEEECTTCSS-----CSSCHHH-------HHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ---ccCCCcEEEEEECCcccc-----cccCHHH-------HHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 011789999999999852 2333333 455666 567889999999999999999999998875
No 123
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=2.4e-14 Score=130.47 Aligned_cols=162 Identities=17% Similarity=0.283 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
.+|+|+|+.|+|||||+++|.+-.. |+.+... .. .+ ........+.+|+++|...+..+ ....+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~-~~--~~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~ 95 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY--VA-DI--EVDGKQVELALWDTAGQEDYDRL-----RPLSYP 95 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------CCEE--EE-EE--EETTEEEEEEEEECTTCTTCTTT-----GGGGCT
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceE--EE-EE--EECCEEEEEEEEECCCcHHHHHH-----HHhhcC
Confidence 5899999999999999999985322 3333211 11 11 01123457889999998777655 233444
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
... +++++|.+.+.+ ++.+ ..|...+.... +
T Consensus 96 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------~--- 128 (207)
T 2fv8_A 96 DTDVILMCFSVDSPDS-LENIPEKWVPEVKHFC-------------------------------------------P--- 128 (207)
T ss_dssp TCCEEEEEEETTCHHH-HHHHHHTHHHHHHHHS-------------------------------------------T---
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC-------------------------------------------C---
Confidence 444 466788888765 4444 55644333221 1
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhc--------ccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKD--------FYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~--------~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l 243 (415)
++|+++|+||+|+....+.. +.+.. ...+.+|.++|+ .+++||++++.+++.++++|
T Consensus 129 -------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l 194 (207)
T 2fv8_A 129 -------NVPIILVANKKDLRSDEHVRTELARMKQEPVRT-------DDGRAMAVRIQAYDYLECSAKTKEGVREVFETA 194 (207)
T ss_dssp -------TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCH-------HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred -------CCCEEEEEEchhhhccccchhhhhhcccCCCCH-------HHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHH
Confidence 78999999999997531110 11222 235778888898 89999999999999999999
Q ss_pred HHHHhCCCC
Q psy13975 244 AHRLYGFPF 252 (415)
Q Consensus 244 ~h~l~~~~f 252 (415)
.+.++...+
T Consensus 195 ~~~i~~~~~ 203 (207)
T 2fv8_A 195 TRAALQKRY 203 (207)
T ss_dssp HHHHHSCCC
T ss_pred HHHHHHHhh
Confidence 999886543
No 124
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.56 E-value=3.1e-15 Score=133.06 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=102.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCC
Q psy13975 19 IGNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETL 93 (415)
Q Consensus 19 ~e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~ 93 (415)
.-+++|+|+.|+|||||+++|.+-. .++.+... ...+. .......+.+|+++|...+..+... ++
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~-----~~ 73 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY---RKQVV--IDGETCLLDILDTAGQEEYSAMRDQ-----YM 73 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE---EEEEE--ETTEEEEEEEEECCCC---CTTHHH-----HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE---EEEEE--ECCcEEEEEEEECCCcHHHHHHHHH-----HH
Confidence 3589999999999999999997532 22333211 11110 1123456888999998776655322 22
Q ss_pred Cchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 94 PHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 94 ~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
.... +++++|.+++.+ ++.+..|...+......
T Consensus 74 ~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~--------------------------------------------- 107 (189)
T 4dsu_A 74 RTGEGFLCVFAINNTKS-FEDIHHYREQIKRVKDS--------------------------------------------- 107 (189)
T ss_dssp HHCSEEEEEEETTCHHH-HHHHHHHHHHHHHHTTC---------------------------------------------
T ss_pred hcCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC---------------------------------------------
Confidence 2233 356778877655 55555664443332210
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+.. +....+. ++.++..+|..++++|++++.+++.++..|.+.+..
T Consensus 108 ------~~~p~i~v~nK~Dl~~-----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 108 ------EDVPMVLVGNKCDLPS-----RTVDTKQ-------AQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp ------SCCCEEEEEECTTSSS-----CSSCHHH-------HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------CCCcEEEEEECccCcc-----cccCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1789999999999963 2233333 677888899999999999999999999999888764
No 125
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.56 E-value=1e-14 Score=130.40 Aligned_cols=156 Identities=14% Similarity=0.199 Sum_probs=100.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||++.|.+-. .++.+.... ..... ......+.+|+++|...+..+ ....+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~----~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~ 91 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVI----DGETCLLDILDTAGQEEYSAM-----RDQYMR 91 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEE----TTEEEEEEEEECCC----------------CT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEE----CCEEEEEEEEECCChHHHHHH-----HHHhhC
Confidence 589999999999999999997432 223333211 11111 123456889999998766555 333444
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|..++++ ++.+..|...+......
T Consensus 92 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------------- 124 (190)
T 3con_A 92 TGEGFLCVFAINNSKS-FADINLYREQIKRVKDS---------------------------------------------- 124 (190)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHHHHHHHTC----------------------------------------------
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHHhCC----------------------------------------------
Confidence 444 467788888765 55666665444333210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+.. +....++ ++.++.++|+.++.+|++++.+++.++++|...+..
T Consensus 125 -----~~~p~ilv~nK~Dl~~-----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 125 -----DDVPMVLVGNKCDLPT-----RTVDTKQ-------AHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp -----SCCCEEEEEECTTCSC-----CCSCHHH-------HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -----CCCeEEEEEECCcCCc-----ccCCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1789999999999864 2223333 577788889999999999999999999999887764
No 126
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.55 E-value=2.6e-14 Score=128.04 Aligned_cols=158 Identities=18% Similarity=0.304 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCC--------------------------------
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEY-------------------------------- 62 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~-------------------------------- 62 (415)
-+|+|+|+.|+|||||+++|.+.. .++.|..............
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYN 87 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccccc
Confidence 579999999999999999998642 2333322111111111100
Q ss_pred -ccccceEEEEEecCcccchhhhhhccCCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHH
Q psy13975 63 -REDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140 (415)
Q Consensus 63 -~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~L 140 (415)
......+.+|+++|...+..+... .+.... +++++|.+++.+ ++.+..|...+.+..
T Consensus 88 ~~~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~~d~~i~v~D~~~~~s-~~~~~~~~~~i~~~~--------------- 146 (208)
T 3clv_A 88 ENLCNIKFDIWDTAGQERYASIVPL-----YYRGATCAIVVFDISNSNT-LDRAKTWVNQLKISS--------------- 146 (208)
T ss_dssp TTTCEEEEEEEECTTGGGCTTTHHH-----HHTTCSEEEEEEETTCHHH-HHHHHHHHHHHHHHS---------------
T ss_pred CccceeEEEEEECCCcHHHHHHHHH-----HhcCCCEEEEEEECCCHHH-HHHHHHHHHHHHhhC---------------
Confidence 001167889999998776655222 222333 467788888765 445555533222211
Q ss_pred HHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH
Q psy13975 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK 220 (415)
Q Consensus 141 ArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~ 220 (415)
++|+++|+||+| .. ++....++ ++.++.+
T Consensus 147 ---------------------------------------~~piilv~NK~D-~~----~~~~~~~~-------~~~~~~~ 175 (208)
T 3clv_A 147 ---------------------------------------NYIIILVANKID-KN----KFQVDILE-------VQKYAQD 175 (208)
T ss_dssp ---------------------------------------CCEEEEEEECTT-CC-----CCSCHHH-------HHHHHHH
T ss_pred ---------------------------------------CCcEEEEEECCC-cc----cccCCHHH-------HHHHHHH
Confidence 589999999999 32 12333333 6778888
Q ss_pred hCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 221 FGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 221 ~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
+|..++++|++++.+++.++++|.+.++.
T Consensus 176 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 176 NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999887763
No 127
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=1.4e-14 Score=129.67 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+.. .++.|.-. ....+.. ......+.+|+++|...+..+... .+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~-----~~~ 86 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF--KVKTISV--DGNKAKLAIWDTAGQERFRTLTPS-----YYR 86 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEE--TTEEEEEEEEEECSSGGGCCSHHH-----HHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEE--EEEEEEE--CCeEEEEEEEeCCCchhhhhhhHH-----Hhc
Confidence 489999999999999999997532 23334322 2111111 223467899999998776655322 223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+..
T Consensus 87 ~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~------------------------------------------------ 117 (195)
T 1x3s_A 87 GAQGVILVYDVTRRDT-FVKLDNWLNELETYC------------------------------------------------ 117 (195)
T ss_dssp TCCEEEEEEETTCHHH-HHTHHHHHHHHTTCC------------------------------------------------
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHhc------------------------------------------------
Confidence 333 467788887655 444455532221111
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
...++|+++|+||+|+.. +.+..++ ++.++.++|+.+++||++++.+++.++++|.+.++..+
T Consensus 118 ---~~~~~p~ilv~nK~Dl~~-----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 118 ---TRNDIVNMLVGNKIDKEN-----REVDRNE-------GLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp ---SCSCCEEEEEEECTTSSS-----CCSCHHH-------HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred ---CcCCCcEEEEEECCcCcc-----cccCHHH-------HHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 001789999999999942 2233332 56788889999999999999999999999999988643
No 128
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.55 E-value=1.1e-14 Score=132.08 Aligned_cols=159 Identities=18% Similarity=0.313 Sum_probs=106.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+-. .|+.+.. +. ..+ ........+.+|+++|...+..+ ....+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~-~~~--~~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 95 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN--YI-ADI--EVDGKQVELALWDTAGQEDYDRL-----RPLSYP 95 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCC--CE-EEE--EETTEEEEEEEECCCCSGGGTTT-----GGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccce--EE-EEE--EECCEEEEEEEEECCCchhHHHH-----HHHhcC
Confidence 589999999999999999998532 2333321 10 011 01123457889999998877665 233444
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
... +++++|.+++.+ ++.+ ..|...+.+.. +
T Consensus 96 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------~--- 128 (201)
T 2gco_A 96 DTDVILMCFSIDSPDS-LENIPEKWTPEVKHFC-------------------------------------------P--- 128 (201)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHS-------------------------------------------T---
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC-------------------------------------------C---
Confidence 444 467788888766 4444 56644433321 0
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhc--------ccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKD--------FYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~--------~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l 243 (415)
++|+++|+||+|+....+.. +.+..+ ..+.++.++|+ .+++||++++.+++.++.+|
T Consensus 129 -------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i 194 (201)
T 2gco_A 129 -------NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSE-------EGRDMANRISAFGYLECSAKTKEGVREVFEMA 194 (201)
T ss_dssp -------TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHH-------HHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred -------CCCEEEEEecHHhhcCccchhhhcccccCcCCHH-------HHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHH
Confidence 68999999999997532111 112222 36778888898 89999999999999999999
Q ss_pred HHHHhC
Q psy13975 244 AHRLYG 249 (415)
Q Consensus 244 ~h~l~~ 249 (415)
...++.
T Consensus 195 ~~~~l~ 200 (201)
T 2gco_A 195 TRAGLQ 200 (201)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 988764
No 129
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.55 E-value=6.3e-15 Score=133.29 Aligned_cols=163 Identities=15% Similarity=0.194 Sum_probs=82.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC--CCC---CCcEEEEeceeecCCCCccc--cceEEEEEecCcccchhhhhhccCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI--DSP---EKGLALEYAYINVSDEYRED--HTRLGVWILDGEPAHSNLLRFALNQET 92 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl--~~p---~~G~il~~~~~~v~~~~~~~--~~~l~i~~l~g~~~~~~Ll~~~l~~~~ 92 (415)
-+|+|+|+.|+|||||+++|.+. ... ..+...++....+.. .+. ...+.+|+++|...+..+ ....
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~-----~~~~ 93 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI--PDTTVSVELFLLDTAGSDLYKEQ-----ISQY 93 (208)
T ss_dssp EEEEEC----------------------------------CEEEEC--TTSSEEEEEEEEETTTTHHHHHH-----HSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEE--CCcccEEEEEEEECCCcHHHHHH-----HHHH
Confidence 48999999999999999999865 211 111111122211211 112 567899999998877666 4445
Q ss_pred CCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCC
Q psy13975 93 LPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPG 171 (415)
Q Consensus 93 ~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~ 171 (415)
+.... +++++|.+++.+ ++.+..|...+......
T Consensus 94 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~-------------------------------------------- 128 (208)
T 2yc2_C 94 WNGVYYAILVFDVSSMES-FESCKAWFELLKSARPD-------------------------------------------- 128 (208)
T ss_dssp CCCCCEEEEEEETTCHHH-HHHHHHHHHHHHHHCSC--------------------------------------------
T ss_pred HhhCcEEEEEEECCCHHH-HHHHHHHHHHHHHhhcc--------------------------------------------
Confidence 55555 467889888765 56666665444333210
Q ss_pred ccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC-cccHHHHHHHHHHHHhC
Q psy13975 172 EGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE-DKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 172 e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~-~~n~~~l~~~l~h~l~~ 249 (415)
...++|+++|+||+|+... .+.+..++ ++.+|.++|+.+++||+++ +.+++.++++|...++.
T Consensus 129 -----~~~~~piilv~nK~Dl~~~---~~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 129 -----RERPLRAVLVANKTDLPPQ---RHQVRLDM-------AQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -----TTSCCEEEEEEECC----------CCCHHH-------HHHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred -----cccCCcEEEEEECcccchh---hccCCHHH-------HHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 0017899999999999641 23344333 6778888999999999999 99999999999887764
No 130
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=3e-14 Score=124.36 Aligned_cols=156 Identities=16% Similarity=0.182 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++.|.+-. .++.+... .. ... .......+.+|+++|...+..+... .+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~~-~~~--~~~~~~~~~~~Dt~G~~~~~~~~~~-----~~~ 73 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY--RQ-VIS--CDKSICTLQITDTTGSHQFPAMQRL-----SIS 73 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE--EE-EEE--ETTEEEEEEEEECCSCSSCHHHHHH-----HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE--EE-EEE--ECCEEEEEEEEECCCchhhHHHHHH-----hcc
Confidence 589999999999999999998632 23333211 11 110 1123457889999998776655222 122
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.. ++.+..|...+.+.....
T Consensus 74 ~~~~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~--------------------------------------------- 107 (172)
T 2erx_A 74 KGHAFILVYSITSRQS-LEELKPIYEQICEIKGDV--------------------------------------------- 107 (172)
T ss_dssp HCSEEEEEEETTCHHH-HHTTHHHHHHHHHHHC-----------------------------------------------
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHHhCCC---------------------------------------------
Confidence 223 466788887665 455555544433332110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
-++|+++|+||+|+... +.+..++ .+.++..+|+.++++|++++.+++.++++|.+.+
T Consensus 108 -----~~~pii~v~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 108 -----ESIPIMLVGNKCDESPS----REVQSSE-------AEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp ------CCCEEEEEECGGGGGG----CCSCHHH-------HHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred -----CCCCEEEEEEccccccc----cccCHHH-------HHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 17899999999999642 2333322 4667788899999999999999999999997654
No 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.54 E-value=1.3e-14 Score=132.29 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=107.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .|+.|... . ..+. .......+.+|+++|...|..+ ...++.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~ 79 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF--S-ANVA--VDGQIVNLGLWDTAGQEDYSRL-----RPLSYR 79 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE--E-EEEE--CSSCEEEEEEECCCCCCCCCC-------CGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE--E-EEEE--ECCEEEEEEEEECCCcHHHHHH-----HHhhcc
Confidence 589999999999999999997421 23333211 1 1111 1223467899999998877666 333455
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
+.. +++++|.+++.+ ++.+ ..|...+.... +
T Consensus 80 ~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------~--- 112 (212)
T 2j0v_A 80 GADIFVLAFSLISKAS-YENVLKKWMPELRRFA-------------------------------------------P--- 112 (212)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC-------------------------------------------T---
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC-------------------------------------------C---
Confidence 555 467889888776 4444 36754443321 1
Q ss_pred cccccccCCcEEEEEeCcchhhhhhh----cccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEK----DFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~----~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l 247 (415)
++|+++|+||+|+....+. ...+.. ..++.++.++|+ .+++||++++.+++.++++|.+.+
T Consensus 113 -------~~piilv~nK~Dl~~~~~~~~~~~~~v~~-------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 113 -------NVPIVLVGTKLDLRDDKGYLADHTNVITS-------TQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp -------TCCEEEEEECHHHHTCHHHHHTCSSCCCH-------HHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------CCCEEEEEeCHHhhhCccccccccCCCCH-------HHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 6899999999999653110 001122 236778888896 899999999999999999999988
Q ss_pred hCC
Q psy13975 248 YGF 250 (415)
Q Consensus 248 ~~~ 250 (415)
+..
T Consensus 179 ~~~ 181 (212)
T 2j0v_A 179 LQP 181 (212)
T ss_dssp HCC
T ss_pred hhh
Confidence 864
No 132
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.54 E-value=1.4e-14 Score=132.01 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=104.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+. ..++.+... ...+. .......+.+|+++|...+..+ ....+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~---~~~~~--~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 100 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVM--VDGKPVNLGLWDTAGLEDYDRL-----RPLSYP 100 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE---EEEEE--CC-CEEEEEEEEECCSGGGTTT-----GGGGCT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee---EEEEE--ECCEEEEEEEEECCCchhhHHH-----HHHHhc
Confidence 58999999999999999998732 233333321 11111 1233466789999998877666 333445
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
... +++++|.+++.+ ++.+ ..|...+.... .
T Consensus 101 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------~ 133 (204)
T 4gzl_A 101 QTDVFLICFSLVSPAS-FENVRAKWYPEVRHHC----------------------------------------------P 133 (204)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC----------------------------------------------S
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhC----------------------------------------------C
Confidence 555 467888888766 4444 35644333221 0
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhc--------ccCChhhHHHHHHHHHHHHHHhCCe-EEEeccCCcccHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKD--------FYYKEEHFDFVQQYIRKFCLKFGAG-LFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~--------~~~~~e~~d~i~q~LR~l~~~~Gas-li~tS~k~~~n~~~l~~~l 243 (415)
++|+++|+||+|+....+.. +.+.. +..+.+|..+|+. +++||++++.+++.++++|
T Consensus 134 -------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 199 (204)
T 4gzl_A 134 -------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-------PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
T ss_dssp -------SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH-------HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred -------CCCEEEEEechhhccchhhhhhhhccccccccH-------HHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 78999999999997532110 11222 3367888889974 9999999999999999999
Q ss_pred HHHH
Q psy13975 244 AHRL 247 (415)
Q Consensus 244 ~h~l 247 (415)
.+.+
T Consensus 200 ~~~~ 203 (204)
T 4gzl_A 200 IRAV 203 (204)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8764
No 133
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.54 E-value=5.7e-15 Score=135.28 Aligned_cols=162 Identities=20% Similarity=0.290 Sum_probs=104.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeecCCCC--------ccccceEEEEEecCcccchhhhhhcc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPE---KGLALEYAYINVSDEY--------REDHTRLGVWILDGEPAHSNLLRFAL 88 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~---~G~il~~~~~~v~~~~--------~~~~~~l~i~~l~g~~~~~~Ll~~~l 88 (415)
-+|+|+|+.|+|||||+++|.+..... .+...++....+.... .....++.+|++.|...+..+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~-- 103 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA-- 103 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH--
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHH--
Confidence 479999999999999999998643221 1222222211111000 011467899999998777665322
Q ss_pred CCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccc
Q psy13975 89 NQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVS 167 (415)
Q Consensus 89 ~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~ 167 (415)
.+.... +++++|.+++.+ ++.+..| +..+ . ...
T Consensus 104 ---~~~~~d~iilV~D~~~~~s-~~~~~~~-------l~~i----------------~------------------~~~- 137 (217)
T 2f7s_A 104 ---FFRDAMGFLLMFDLTSQQS-FLNVRNW-------MSQL----------------Q------------------ANA- 137 (217)
T ss_dssp ---HHTTCCEEEEEEETTCHHH-HHHHHHH-------HHTC----------------C------------------CCC-
T ss_pred ---HhcCCCEEEEEEECcCHHH-HHHHHHH-------HHHH----------------H------------------Hhc-
Confidence 233333 467788887655 4444444 2222 0 000
Q ss_pred cCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 168 VIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 168 lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
...++|+++|+||+|+... +.+..++ ++.+|..+|+.+++||++++.+++.++.+|.+.+
T Consensus 138 ---------~~~~~piilV~NK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 138 ---------YCENPDIVLIGNKADLPDQ----REVNERQ-------ARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp ---------TTTCCEEEEEEECTTCGGG----CCSCHHH-------HHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ---------CcCCCCEEEEEECCccccc----cccCHHH-------HHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 0017899999999999642 3343333 6778888999999999999999999999999887
Q ss_pred hC
Q psy13975 248 YG 249 (415)
Q Consensus 248 ~~ 249 (415)
+.
T Consensus 198 ~~ 199 (217)
T 2f7s_A 198 MK 199 (217)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 134
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.54 E-value=2.6e-15 Score=146.05 Aligned_cols=191 Identities=16% Similarity=0.086 Sum_probs=93.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC-CCCCCcEEEEeceeecCC-----------CCccccceEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI-DSPEKGLALEYAYINVSD-----------EYREDHTRLG 70 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl-~~p~~G~il~~~~~~v~~-----------~~~~~~~~l~ 70 (415)
+.++++++|+| +|+|+||||||||+++|.|. ..|+.| +. +.+.++.. ........+.
T Consensus 11 ~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~-~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 11 KSVKKGFEFTL---------MVVGESGLGKSTLINSLFLTDLYPERV-IS-GAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp -------CEEE---------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEE
T ss_pred EEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCCCccCCCC-cc-cCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 35788888776 89999999999999999987 667666 21 11111100 0011123455
Q ss_pred EEEecCcccchhhhhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhccccc
Q psy13975 71 VWILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLR 150 (415)
Q Consensus 71 i~~l~g~~~~~~Ll~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~ 150 (415)
+|+..|.... + . . . .....+.+.+ .+..+..+..+ |+|+|||+.+||++. .
T Consensus 80 v~Dt~g~~~~--~-----~-----~------~--e~~~~l~~~l---~~~~~~~~~~~--sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 80 VVDTPGYGDA--I-----N-----C------R--DCFKTIISYI---DEQFERYLHDE--SGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp EEEEC-------------------------------CTTHHHHH---HHHHHHHHHHH--TSSCCTTCCCCCCCE----E
T ss_pred hhhhhhhhhh--c-----C-----c------H--HHHHHHHHHH---HHHHHHHHHHh--CHHhhhhhhhhhhhh----e
Confidence 6655542111 0 0 0 0 0000112222 23345667777 999999999888774 3
Q ss_pred ccchhhhhhccccCccccCCCccccccc-cCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEec
Q psy13975 151 AHLIELLSFYLFYSSVSVIPGEGILERN-LGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTS 229 (415)
Q Consensus 151 ~~lde~~s~~~~~~~~~lpL~e~~l~~n-lgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS 229 (415)
+.+|||+... +-+++...+... -.+++++|++|+|+... ++.....+.++.++.++|+.++++|
T Consensus 131 l~ldePt~~~------Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~---------~e~~~~~~~~~~~~~~~~~~~~e~S 195 (301)
T 2qnr_A 131 FYFISPFGHG------LKPLDVAFMKAIHNKVNIVPVIAKADTLTL---------KERERLKKRILDEIEEHNIKIYHLP 195 (301)
T ss_dssp EEEECSSSSS------CCHHHHHHHHHHTTTSCEEEEECCGGGSCH---------HHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred eeeecCcccC------CCHHHHHHHHHHHhcCCEEEEEEeCCCCCH---------HHHHHHHHHHHHHHHHcCCeEEecC
Confidence 3446653210 111111111111 15799999999999642 2233334457788889999999999
Q ss_pred cCCcccHHHHHHHHHHHHhC
Q psy13975 230 AKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 230 ~k~~~n~~~l~~~l~h~l~~ 249 (415)
++++ +++.++..+...+..
T Consensus 196 a~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 196 DAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp ----------CHHHHHHHHT
T ss_pred Cccc-cccHHHHHHHHHhhc
Confidence 9999 999999999888764
No 135
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=7.6e-15 Score=132.40 Aligned_cols=156 Identities=13% Similarity=0.174 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+- ..++.+... .. .+. .......+.+|+++|... ..+. ...+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~--~~-~~~--~~~~~~~~~l~Dt~G~~~-~~~~-----~~~~~ 97 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY--RH-QAT--IDDEVVSMEILDTAGQED-TIQR-----EGHMR 97 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE--EE-EEE--ETTEEEEEEEEECCCCCC-CHHH-----HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE--EE-EEE--ECCEEEEEEEEECCCCCc-ccch-----hhhhc
Confidence 68999999999999999999743 233444321 11 111 112346788999998665 2221 11222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+....
T Consensus 98 ~~d~iilv~D~~~~~s-~~~~~~~~~~i~~~~~~---------------------------------------------- 130 (196)
T 2atv_A 98 WGEGFVLVYDITDRGS-FEEVLPLKNILDEIKKP---------------------------------------------- 130 (196)
T ss_dssp HCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHTT----------------------------------------------
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHhhCC----------------------------------------------
Confidence 333 467788888765 55566664444333211
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcc-cHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDK-NCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~-n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+... +.+..++ ++.+|.++|+.+++||++++. +++.+++.|.+.++.
T Consensus 131 -----~~~piilv~NK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 131 -----KNVTLILVGNKADLDHS----RQVSTEE-------GEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp -----SCCCEEEEEECGGGGGG----CCSCHHH-------HHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEECcccccc----cccCHHH-------HHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 17899999999999642 3344333 567788889999999999999 999999999988763
No 136
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.53 E-value=8.1e-15 Score=126.86 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=101.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++.+.+.. .++.+... ...+. .......+.+|+++|...+..+... .+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~D~~G~~~~~~~~~~-----~~~ 73 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY---RKQVV--IDGETCLLDILDTAGQEEYSAMRDQ-----YMR 73 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEE--ETTEEEEEEEEECCCCSSCCHHHHH-----HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE---EEEEE--ECCEEEEEEEEECCCchhhhHHHHH-----hhc
Confidence 479999999999999999997432 22223211 11111 0123456789999997766555221 122
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++++ ++.+..|...+.+....
T Consensus 74 ~~~~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~---------------------------------------------- 106 (166)
T 2ce2_X 74 TGEGFLCVFAINNTKS-FEDIHQYREQIKRVKDS---------------------------------------------- 106 (166)
T ss_dssp HCSEEEEEEETTCHHH-HHHHHHHHHHHHHHHTC----------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 222 356677777655 45555664443333210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+.. +....++ ++.++.++|+.++.+|++++.+++.++++|...+.
T Consensus 107 -----~~~p~iiv~nK~Dl~~-----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 107 -----DDVPMVLVGNKSDLAA-----RTVESRQ-------AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp -----SCCCEEEEEECTTCSC-----CCSCHHH-------HHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEEchhhhh-----cccCHHH-------HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1789999999999864 1222222 67788889999999999999999999999988764
No 137
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.53 E-value=4.4e-14 Score=127.90 Aligned_cols=160 Identities=19% Similarity=0.281 Sum_probs=106.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+.. .++.|.- +....+. .......+.+|+++|...+..+ ....+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~ 79 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVM--VDDRLVTMQIWDTAGQERFQSL-----GVAFYR 79 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEE--EEEEEEE--SSSCEEEEEEEEECSSGGGSCS-----CCGGGT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccce--EEEEEEE--ECCEEEEEEEEeCCCcHHHHHh-----HHHHHh
Confidence 589999999999999999997532 2333321 2221111 1223467899999998777655 333444
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.......
T Consensus 80 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~--------------------------------------------- 113 (207)
T 1vg8_A 80 GADCCVLVFDVTAPNT-FKTLDSWRDEFLIQASPR--------------------------------------------- 113 (207)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHCCS---------------------------------------------
T ss_pred CCcEEEEEEECCCHHH-HHHHHHHHHHHHHhcccc---------------------------------------------
Confidence 444 467888888765 555666654443332110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHH-HhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCL-KFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~-~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
...++|+++|+||+|+.. +....++ ++.++. ..+..++++|++++.+++.++++|.+.++.
T Consensus 114 ---~~~~~piilv~nK~Dl~~-----~~~~~~~-------~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 114 ---DPENFPFVVLGNKIDLEN-----RQVATKR-------AQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp ---SGGGSCEEEEEECTTSSC-----CCSCHHH-------HHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---cCCCCcEEEEEECCCCcc-----cccCHHH-------HHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 011789999999999962 2223222 455655 567899999999999999999999988875
No 138
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.52 E-value=1.3e-14 Score=132.95 Aligned_cols=160 Identities=21% Similarity=0.242 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+-. .++.|... ...... ........+.+|+++|...+..+. ...+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~-----~~~~~ 83 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN--HPVTFL-DDQGNVIKFNVWDTAGQEKKAVLK-----DVYYI 83 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEE--EEEEEE-BTTSCEEEEEEEEECSGGGTSCCC-----HHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceee--EEEEEE-eCCCcEEEEEEEecCCchhhchHH-----HHHhh
Confidence 489999999999999999998542 23344322 111111 111223678999999987665442 22233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.....
T Consensus 84 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 115 (218)
T 4djt_A 84 GASGAILFFDVTSRIT-CQNLARWVKEFQAVVG----------------------------------------------- 115 (218)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHC-----------------------------------------------
T ss_pred cCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 333 467788888765 4555666544433321
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
.++|+++|+||+|+... +.+..+ .++.++..+|+.++++|++++.+++.++.+|.+.+....
T Consensus 116 -----~~~piilv~nK~Dl~~~----~~~~~~-------~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 116 -----NEAPIVVCANKIDIKNR----QKISKK-------LVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp -----SSSCEEEEEECTTCC--------CCHH-------HHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred -----CCCCEEEEEECCCCccc----cccCHH-------HHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 16899999999998642 233332 267788889999999999999999999999999988753
No 139
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.52 E-value=6.8e-14 Score=125.72 Aligned_cols=164 Identities=12% Similarity=0.126 Sum_probs=107.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCCC------CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCC
Q psy13975 19 IGNILLISDNSSGKTTLIAKLQGID------SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQET 92 (415)
Q Consensus 19 ~e~v~IlG~nGsGKSTLl~~l~Gl~------~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~ 92 (415)
..+|+|+|+.|+|||||+++|.+-. .|+.|.. +. .+ ......+.+|++.|...+..+ ...+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~--~~----~~~~~~~~i~Dt~G~~~~~~~-----~~~~ 83 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VE--TF----EKGRVAFTVFDMGGAKKFRGL-----WETY 83 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EE--EE----EETTEEEEEEEECCSGGGGGG-----GGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EE--EE----EeCCEEEEEEECCCCHhHHHH-----HHHH
Confidence 3689999999999999999998632 3444431 11 11 124567899999998887766 3334
Q ss_pred CCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCC
Q psy13975 93 LPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPG 171 (415)
Q Consensus 93 ~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~ 171 (415)
+.... +++++|.+++.+ ++.+..|...+.+..... ...+
T Consensus 84 ~~~~d~ii~v~D~~~~~s-~~~~~~~~~~~~~~~~~~-------------------------------------~~~~-- 123 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLR-LCVVKSEIQAMLKHEDIR-------------------------------------RELP-- 123 (199)
T ss_dssp CTTCSEEEEEEETTCGGG-HHHHHHHHHHHHTSHHHH-------------------------------------SBCT--
T ss_pred HhcCCEEEEEEECCcHHH-HHHHHHHHHHHHhChhhh-------------------------------------hccc--
Confidence 55555 467889988776 555555533322211000 0000
Q ss_pred ccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHH--HHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 172 EGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQY--IRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 172 e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~--LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
...++|++||+||+|+.... . .+.+.+. +..++...++.+++||++++.+++.++++|...+..
T Consensus 124 -----~~~~~piilv~NK~Dl~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 124 -----GGGRVPFLFFANKMDAAGAK------T---AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp -----TSCBCCEEEEEECTTSTTCC------C---HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred -----ccCCCCEEEEEECcCCCCCC------C---HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 01178999999999996431 1 1122222 334445678899999999999999999999988764
No 140
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.51 E-value=2.9e-14 Score=126.04 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-C---CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-D---SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-~---~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||++++.+- . .|+.|... . ..+. .......+.+|+++|...+.. +.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~l~i~Dt~G~~~~~~----------~~~ 72 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY--K-KEML--VDGQTHLVLIREEAGAPDAKF----------SGW 72 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE--E-EEEE--ETTEEEEEEEEECSSSCCHHH----------HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE--E-EEEE--ECCEEEEEEEEECCCCchhHH----------HHh
Confidence 58999999999999999999742 2 23334311 1 1111 012346788999998765321 233
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|.+.+.+..... .
T Consensus 73 ~d~~ilv~D~~~~~s-~~~~~~~~~~i~~~~~~~------------------------------------------~--- 106 (178)
T 2iwr_A 73 ADAVIFVFSLEDENS-FQAVSRLHGQLSSLRGEG------------------------------------------R--- 106 (178)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHHHHHHHCSS------------------------------------------S---
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHHHHHHHhcC------------------------------------------C---
Confidence 33 467889888776 566677755444433110 0
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh-CCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF-GAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~-Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
-++|+++|+||+|+... ..+....++ ++.++.++ +..+++||++++.+++.+++.+...++.
T Consensus 107 ----~~~piilv~nK~Dl~~~--~~~~v~~~~-------~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 107 ----GGLALALVGTQDRISAS--SPRVVGDAR-------ARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp ----CCCEEEEEEECTTCBTT--BCCCSCHHH-------HHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred ----CCCCEEEEEECcccccc--ccCcCCHHH-------HHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 17899999999999531 223344444 56677776 6789999999999999999999988764
No 141
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=2.2e-14 Score=130.50 Aligned_cols=156 Identities=19% Similarity=0.347 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||++.|.+-. .++.|.-.......+ ......+.+|+++|...+..+. ...+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~-----~~~~~ 91 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI----NGKKVKLQLWDTAGQERFRTIT-----TAYYR 91 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE----TTEEEEEEEECCTTGGGGTCCC-----HHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE----CCEEEEEEEEeCCCcHHHHHHH-----HHHhc
Confidence 689999999999999999998532 222232111111111 1233578899999987765552 22233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.....
T Consensus 92 ~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~----------------------------------------------- 123 (213)
T 3cph_A 92 GAMGIILVYDVTDERT-FTNIKQWFKTVNEHAN----------------------------------------------- 123 (213)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHTT-----------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 333 467788887665 5555556443332210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+.. +....++ ++.++.++|+.++++|++++.+++.++.+|.+.+..
T Consensus 124 -----~~~piilv~nK~Dl~~-----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 124 -----DEAQLLLVGNKSDMET-----RVVTADQ-------GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp -----TCSEEEEEEECTTCSS-----CCSCHHH-------HHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEECCCCcc-----cccCHHH-------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1689999999999832 2233333 567788889999999999999999999999887754
No 142
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.51 E-value=2.4e-14 Score=129.36 Aligned_cols=159 Identities=15% Similarity=0.170 Sum_probs=96.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC---C-CCcEEEEeceeecCCCCccccceEEEEEecCccc-chhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS---P-EKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-HSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~---p-~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-~~~Ll~~~l~~~~~~ 94 (415)
-+++|||+.|+|||||++++.|... . ..+.+.++....+. .......+.+|++.+... +..+ ...++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~Dt~~~~~~~~~~-----~~~~~~ 79 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLM--VDGESATIILLDMWENKGENEWL-----HDHCMQ 79 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEE--ETTEEEEEEEECCCCC----CTT-----GGGHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEE--ECCeEEEEEEEEeccCcchhhhH-----HHhhcc
Confidence 4799999999999999999985211 1 11111101001110 012234566777766543 2222 222233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+++.+ ++.+..|...+.+...
T Consensus 80 ~~~~~i~v~dv~~~~s-~~~~~~~~~~l~~~~~----------------------------------------------- 111 (192)
T 2cjw_A 80 VGDAYLIVYSITDRAS-FEKASELRIQLRRARQ----------------------------------------------- 111 (192)
T ss_dssp HCSEEEEEEETTCHHH-HHHHHHHHHHHHHHTT-----------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhC-----------------------------------------------
Confidence 233 467788888766 5555666433322210
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.-++|+++|+||+|+.. .+.+..++ .+.++..+++.+++|||+++.|++.+|+.+...+.
T Consensus 112 ----~~~~piilV~NK~Dl~~----~r~v~~~~-------~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 112 ----TEDIPIILVGNKSDLVR----XREVSVSE-------GRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp ----TSCCCEEEEEECTTCGG----GCCSCHHH-------HHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEEechhhhc----cccccHHH-------HHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHH
Confidence 01789999999999863 23333322 45677888999999999999999999999988775
No 143
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.51 E-value=3.3e-14 Score=124.30 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=100.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||+++|.+- ..|+.|.. +..... ....+.+|+++|...+..+ ...++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~------~~~~~~~~Dt~G~~~~~~~-----~~~~~~~ 74 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN--VETVTY------KNLKFQVWDLGGLTSIRPY-----WRCYYSN 74 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE--EEEEEE------TTEEEEEEEECCCGGGGGG-----GGGGCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccc--eEEEEE------CCEEEEEEECCCChhhhHH-----HHHHhcc
Confidence 68999999999999999999742 23343421 111111 1467899999998877666 3334445
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|. ...+...
T Consensus 75 ~d~ii~v~d~~~~~s-~~~~~~~~---~~~~~~~---------------------------------------------- 104 (171)
T 1upt_A 75 TDAVIYVVDSCDRDR-IGISKSEL---VAMLEEE---------------------------------------------- 104 (171)
T ss_dssp CSEEEEEEETTCCTT-HHHHHHHH---HHHHTCG----------------------------------------------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH---HHHHhch----------------------------------------------
Confidence 44 467888888765 34443332 2222110
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHH-HHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYI-RKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~L-R~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
...++|+++|+||+|+.... . .+.+.+.+ ...+...+..+++||++++.+++.++++|.+.+..
T Consensus 105 --~~~~~piilv~nK~Dl~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 105 --ELRKAILVVFANKQDMEQAM------T---SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp --GGTTCEEEEEEECTTSTTCC------C---HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred --hhCCCEEEEEEECCCCcCCC------C---HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 00178999999999996421 1 11122222 22344567789999999999999999999887754
No 144
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.50 E-value=9.1e-14 Score=125.85 Aligned_cols=157 Identities=18% Similarity=0.313 Sum_probs=101.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|++|||||||+++|.|... |+.|.-. ....+.- ......+.+|++.|...+..+.... +.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~--~~~~i~~--~g~~~~~~i~Dt~g~~~~~~~~~~~-----~~ 76 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF--ATRSIQV--DGKTIKAQIWDTAGQERYRRITSAY-----YR 76 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEE--EEEEEEE--TTEEEEEEEEECSSGGGTTCCCHHH-----HT
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEEEE--CCEEEEEEEEECCCchhhhhhhHHH-----Hh
Confidence 4789999999999999999998643 4433211 1111110 1223567889999877665442211 12
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.....+ ++.+..|...+....
T Consensus 77 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~------------------------------------------------ 107 (199)
T 2f9l_A 77 GAVGALLVYDIAKHLT-YENVERWLKELRDHA------------------------------------------------ 107 (199)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHS------------------------------------------------
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHhc------------------------------------------------
Confidence 222 345677766554 444445533222110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
..+.|+++|++|+|+... +....++ .+.++.+.+..++.||++++.+++.+++.|...++.
T Consensus 108 ----~~~~~i~~v~nK~Dl~~~----~~~~~~~-------a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 108 ----DSNIVIMLVGNKSDLRHL----RAVPTDE-------ARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp ----CTTCEEEEEEECTTCGGG----CCSCHHH-------HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEEECcccccc----cCcCHHH-------HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 016799999999999642 2232222 678888899999999999999999999999888875
No 145
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.49 E-value=3.1e-14 Score=152.90 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=31.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHH
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKL 39 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l 39 (415)
..+|+||||+|++| ++++|+|+||||||||+++|
T Consensus 335 ~~~L~~vsl~I~~G---e~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 335 EHNLKNVSVKIPLG---TFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp STTCCSEEEEEETT---SEEEEECSTTSSHHHHHTTT
T ss_pred ccccccceeEecCC---CEEEEEeeCCCCHHHHHHHH
Confidence 35799999999999 99999999999999999764
No 146
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.48 E-value=1.1e-13 Score=124.73 Aligned_cols=156 Identities=19% Similarity=0.317 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSP-----EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p-----~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+||||||||+++|.|...+ +.|.- +....+.- ......+.+|++.|...+..+.. ..+.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~--~~~~~i~~--~g~~~~~~i~Dt~g~~~~~~~~~-----~~~~ 100 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE--FATRSIQV--DGKTIKAQIWDTAGLERYRAITS-----AYYR 100 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEE--EEEEEEEE--TTEEEEEEEEEECSCCSSSCCCH-----HHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceE--EEEEEEEE--CCEEEEEEEEECCCCcchhhhhH-----HHhh
Confidence 47899999999999999999986543 33321 11111111 11234567799888765544421 1122
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... ++.++|.....+ ++.+..|...+.+..
T Consensus 101 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~------------------------------------------------ 131 (191)
T 1oix_A 101 GAVGALLVYDIAKHLT-YENVERWLKELRDHA------------------------------------------------ 131 (191)
T ss_dssp TCCEEEEEEETTCHHH-HHTHHHHHHHHHHHS------------------------------------------------
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHhc------------------------------------------------
Confidence 222 345666666544 444445533222110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
....|+++|++|+|+... +.... ...+.+|.+.+..++.||++++.+++.+++.|...++
T Consensus 132 ----~~~~~i~~v~nK~Dl~~~----~~~~~-------~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i~ 191 (191)
T 1oix_A 132 ----DSNIVIMLVGNKSDLRHL----RAVPT-------DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191 (191)
T ss_dssp ----CTTCEEEEEEECGGGGGG----CCSCH-------HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ----CCCCcEEEEEECcccccc----cccCH-------HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 016789999999999642 22222 2367888899999999999999999999999987664
No 147
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=2.8e-14 Score=128.24 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=102.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+- ..++.+... .. .+. .......+.+|+++|...+..+... .+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~-~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~ 78 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY--RQ-VIS--CDKSVCTLQITDTTGSHQFPAMQRL-----SIS 78 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE--EE-EEE--ETTEEEEEEEEECCGGGSCHHHHHH-----HHH
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce--eE-EEE--ECCEEEEEEEEeCCChHHhHHHHHH-----hhc
Confidence 58999999999999999999752 123333221 11 110 1123457889999998776655222 222
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
... +++++|.+.+.+ ++.+..|...+.+.....
T Consensus 79 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~--------------------------------------------- 112 (199)
T 2gf0_A 79 KGHAFILVFSVTSKQS-LEELGPIYKLIVQIKGSV--------------------------------------------- 112 (199)
T ss_dssp HCSEEEEEEETTCHHH-HHTTHHHHHHHHHHHSCG---------------------------------------------
T ss_pred cCCEEEEEEECcCHHH-HHHHHHHHHHHHHHhcCC---------------------------------------------
Confidence 233 456788877655 455555544333332110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.++|+++|+||+|+.. +....++ ++.++..+|..++++|++++.+++.+++.|.+.+..
T Consensus 113 -----~~~piilv~nK~Dl~~-----~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 113 -----EDIPVMLVGNKCDETQ-----REVDTRE-------AQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp -----GGSCEEEEEECTTCSS-----CSSCHHH-------HHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred -----CCCCEEEEEECccCCc-----cccCHHH-------HHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 1689999999999863 2233222 566778889999999999999999999999876643
No 148
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.47 E-value=7.2e-15 Score=135.23 Aligned_cols=156 Identities=21% Similarity=0.322 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCcHHHHHHH-HhCC----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAK-LQGI----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~-l~Gl----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++ +.|. ..++.|.-.......+ ......+.+|++.|...+..+. ..++.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~-----~~~~~ 86 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT----NRGPIKFNVWDTAGQEKFGGLR-----DGYYI 86 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE----TTEEEEEEEEEECSGGGTSCCC-----HHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE----CCEEEEEEEEeCCChHHHhHHH-----HHHHh
Confidence 4799999999999999998 4442 2345554321111111 2234678999999987766552 22233
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 87 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------- 118 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVT-YKNVPNWHRDLVRVCE----------------------------------------------- 118 (221)
T ss_dssp TCCEEEEEEETTCHHH-HHTHHHHHHHHHHHST-----------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCC-----------------------------------------------
Confidence 444 467788888765 5555666444433220
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
++|+++|+||+|+... ....+ ...++..+|+.+++||++++.+++.++.+|.+.++..+
T Consensus 119 ------~~p~ilv~nK~Dl~~~-----~~~~~--------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 119 ------NIPIVLCGNKVDIKDR-----KVKAK--------SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp ------TCCEEEEEECTTSSSC-----SSCGG--------GCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred ------CCCEEEEEECCccccc-----cccHH--------HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 6899999999999642 12221 34567788999999999999999999999999988753
No 149
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.46 E-value=2.9e-14 Score=123.98 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=95.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
+++|+|+.|+|||||++++.+- ..|+.|. ....+. .....+.+|+++|...+..+.. ..+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~----~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~-----~~~~~~ 68 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVE----YKNISFTVWDVGGQDKIRPLWR-----HYFQNT 68 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC----CEEEEE----CSSCEEEEEECCCCGGGHHHHH-----HHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccCcCce----eEEEEE----ECCEEEEEEEcCCChhhHHHHH-----HHhccC
Confidence 5899999999999999999742 2333332 111111 1236789999999887766532 233444
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|. .+.....
T Consensus 69 d~~i~v~d~~~~~s-~~~~~~~~---~~~~~~~----------------------------------------------- 97 (164)
T 1r8s_A 69 QGLIFVVDSNDRER-VNEAREEL---MRMLAED----------------------------------------------- 97 (164)
T ss_dssp SEEEEEEETTCGGG-HHHHHHHH---HHHHTCG-----------------------------------------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH---HHHHhch-----------------------------------------------
Confidence 4 467788888766 44444442 2222110
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHH-HHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYI-RKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~L-R~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
...++|+++|+||+|+.... . .+.+.+.+ ...+...+..+++||++++.+++.++++|.+.+.
T Consensus 98 -~~~~~piilv~nK~Dl~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 98 -ELRDAVLLVFANKQDLPNAM------N---AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp -GGTTCEEEEEEECTTSTTCC------C---HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred -hhcCCeEEEEEECcCCcCCC------C---HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 00178999999999996421 1 11111111 1122234567999999999999999999987654
No 150
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.46 E-value=1.1e-13 Score=139.81 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=33.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
.+|++++|+|.+| +++|+|+|||||||||++|.++..
T Consensus 49 ~~l~~v~l~~~~G----~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 49 ATITQLELELGGG----FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TTEEEEEEECCSS----EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cceeeEEEecCCC----cEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999 999999999999999999976554
No 151
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.45 E-value=1.1e-13 Score=123.27 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=100.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||++++.+-. .|+.|.. +..... ....+.+|+++|...+..+ ....+.+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~------~~~~~~~~Dt~G~~~~~~~-----~~~~~~~ 85 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEH------RGFKLNIWDVGGQKSLRSY-----WRNYFES 85 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEE------TTEEEEEEEECCSHHHHTT-----GGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEE------CCEEEEEEECCCCHhHHHH-----HHHHhcC
Confidence 789999999999999999998643 2333421 111111 2467899999998777655 3334445
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|... .+...
T Consensus 86 ~d~ii~v~d~~~~~s-~~~~~~~~~~---~~~~~---------------------------------------------- 115 (186)
T 1ksh_A 86 TDGLIWVVDSADRQR-MQDCQRELQS---LLVEE---------------------------------------------- 115 (186)
T ss_dssp CSEEEEEEETTCGGG-HHHHHHHHHH---HHTCG----------------------------------------------
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHH---HHhCh----------------------------------------------
Confidence 54 467889888776 4554444222 22110
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHH-HHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIR-KFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR-~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
...++|+++|+||+|+... .. .+.+.+.+. ..+...+..+++||++++.+++.+++.|.+.+...
T Consensus 116 --~~~~~piilv~nK~Dl~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 116 --RLAGATLLIFANKQDLPGA------LS---CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp --GGTTCEEEEEEECTTSTTC------CC---HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred --hcCCCcEEEEEeCccCCCC------CC---HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 0017899999999999642 11 111111111 11123567899999999999999999998877643
No 152
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=122.22 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=97.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC------CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID------SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETL 93 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~------~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~ 93 (415)
-+|+|+|+.|+|||||+++|.+.. .++.|.. .....+ ....+.+|++.|...+..+ ....+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~------~~~~~~l~Dt~G~~~~~~~-----~~~~~ 88 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKS------SSLSFTVFDMSGQGRYRNL-----WEHYY 88 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEEC------SSCEEEEEEECCSTTTGGG-----GGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEE------CCEEEEEEECCCCHHHHHH-----HHHHH
Confidence 589999999999999999998643 2333321 111111 1267899999998877666 23334
Q ss_pred Cchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 94 PHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 94 ~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
.+.. +++++|.+++.+ ++.+..|...+.+... +
T Consensus 89 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------~-- 122 (190)
T 2h57_A 89 KEGQAIIFVIDSSDRLR-MVVAKEELDTLLNHPD-------------------------------------------I-- 122 (190)
T ss_dssp GGCSEEEEEEETTCHHH-HHHHHHHHHHHHHSTT-------------------------------------------T--
T ss_pred hcCCEEEEEEECCCHHH-HHHHHHHHHHHHhChh-------------------------------------------h--
Confidence 4444 467788887655 4444444222211110 0
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHH-HHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIR-KFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR-~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.+.++|+++|+||+|+... ...++ +.+.+. ......+..+++||++++.+++.++++|...+.
T Consensus 123 ----~~~~~piilv~nK~Dl~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 123 ----KHRRIPILFFANKMDLRDA------VTSVK---VSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp ----TTSCCCEEEEEECTTSTTC------CCHHH---HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ----ccCCCeEEEEEeCcCcccC------CCHHH---HHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0027899999999999642 11122 222221 000124678999999999999999999987653
No 153
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.44 E-value=8.2e-15 Score=132.67 Aligned_cols=158 Identities=16% Similarity=0.297 Sum_probs=99.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCC---cEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEK---GLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~---G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+|+|+|+.|+|||||+++|.+...... +....+....+. .......+.+|+++|...+..+ ....+...
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~~~ 106 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE--LDGKTIKLQIWDTAGQERFRTI-----TSSYYRGA 106 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEE--ETTEEEEEEEECCTTCTTCCCC-----SCC--CCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEE--ECCEEEEEEEEECCCcHhHHHH-----HHHHhhcC
Confidence 4799999999999999999986432211 111101111110 0123457889999998777655 44455555
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+++.+ ++.+..|...+.... .
T Consensus 107 d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~---------------------------------------------~---- 136 (199)
T 3l0i_B 107 HGIIVVYDVTDQES-FNNVKQWLQEIDRYA---------------------------------------------S---- 136 (199)
T ss_dssp SEEEECC-CCCSHH-HHHHHHHHHHHHSCC--------------------------------------------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHHHHhc---------------------------------------------c----
Confidence 5 467889888766 555666643332111 0
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|+++|+||+|+... +.+..++ ++.+|..+|+.++++|++++.+++.++++|...+.
T Consensus 137 ---~~~p~ilv~nK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 137 ---ENVNKLLVGNKCDLTTK----KVVDYTT-------AKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp ---CCSEEEEC-CCSSCC------CCCCSCC--------CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred ---CCCCEEEEEECccCCcc----ccCCHHH-------HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 17899999999999642 3333333 57788889999999999999999999999987664
No 154
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.17 E-value=8.1e-15 Score=133.10 Aligned_cols=164 Identities=19% Similarity=0.255 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||+++|.+-. .++.+.. + ...+ ........+.+|+++|...+..+ ....+.
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~-~~~~--~~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~ 100 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN--Y-SANV--MVDGKPVNLGLWDTAGQEDYDRL-----RPLSYP 100 (204)
Confidence 589999999999999999987532 1222211 1 1111 11223456779999998777655 344455
Q ss_pred chh-hHHHHhcCCchhHHHHHH-hHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELH-NWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~-~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
+.. +++++|.+++.+ ++.+. .|...+....
T Consensus 101 ~~d~iilv~D~~~~~s-~~~~~~~~~~~l~~~~----------------------------------------------- 132 (204)
T 3th5_A 101 QTDVFLICFSLVSPAS-FENVRAKWYPEVRHHC----------------------------------------------- 132 (204)
Confidence 555 467888877655 33332 4432222111
Q ss_pred cccccccCCcEEEEEeCcchhhhhhhcccCChhh-HHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEH-FDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~-~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l 247 (415)
-++|+++|+||+|+....+....+.+.. ...-...++.++.++|+ .+++||++++.+++.++++|...+
T Consensus 133 ------~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 133 ------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 0689999999999975321111111110 11223446788888898 899999999999999999987654
No 155
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=4.7e-14 Score=126.06 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||+++|.+-.. |+.|. ....+. -....+.+|+++|...+..+.. .++.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~----~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~-----~~~~~ 83 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGS----NVEEIV----INNTRFLMWDIGGQESLRSSWN-----TYYTN 83 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCS----SCEEEE----ETTEEEEEEECCC----CGGGH-----HHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCcc----ceEEEE----ECCEEEEEEECCCCHhHHHHHH-----HHhcC
Confidence 6899999999999999999985322 22221 111110 1236789999999877665522 22334
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|...+.+...
T Consensus 84 ~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~------------------------------------------------ 114 (187)
T 1zj6_A 84 TEFVIVVVDSTDRER-ISVTREELYKMLAHED------------------------------------------------ 114 (187)
T ss_dssp CCEEEEEEETTCTTT-HHHHHHHHHHHHTSGG------------------------------------------------
T ss_pred CCEEEEEEeCCCHHH-HHHHHHHHHHHHhchh------------------------------------------------
Confidence 44 467788888765 4444444322211110
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHH-HHHhCCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKF-CLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l-~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
..++|+++|+||+|+... ...++ +.+.+... +...|..+++||++++.+++.++++|...+...+
T Consensus 115 ---~~~~piilv~NK~Dl~~~------~~~~~---i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 115 ---LRKAGLLIFANKQDVKEC------MTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp ---GTTCEEEEEEECTTSTTC------CCHHH---HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred ---hCCCeEEEEEECCCCcCC------CCHHH---HHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 017899999999999642 11111 22222110 1235678999999999999999999998876644
No 156
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.42 E-value=4.8e-14 Score=125.90 Aligned_cols=155 Identities=16% Similarity=0.234 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|++|+|||||+++|.+.. .|+.|... ..... ....+.+|+++|...+..+.. .++.+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~--~~~~~------~~~~l~i~Dt~G~~~~~~~~~-----~~~~~ 83 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQS------QGFKLNVWDIGGQRKIRPYWR-----SYFEN 83 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE--EEEEE------TTEEEEEEECSSCGGGHHHHH-----HHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE--EEEEE------CCEEEEEEECCCCHHHHHHHH-----HHhCC
Confidence 689999999999999999998753 23344211 11111 135788999999887765522 22333
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|. .+.+...
T Consensus 84 ~~~~i~v~d~~~~~s-~~~~~~~~---~~~~~~~---------------------------------------------- 113 (181)
T 1fzq_A 84 TDILIYVIDSADRKR-FEETGQEL---TELLEEE---------------------------------------------- 113 (181)
T ss_dssp CSEEEEEEETTCGGG-HHHHHHHH---HHHTTCG----------------------------------------------
T ss_pred CCEEEEEEECcCHHH-HHHHHHHH---HHHHhCh----------------------------------------------
Confidence 44 466788887766 44444442 2222110
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHH-HHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIR-KFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR-~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
...++|+++|+||+|+.... .. +.+.+.+. ..+...+..+++||++++.+++.++++|.+.+.
T Consensus 114 --~~~~~piilv~NK~Dl~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 114 --KLSCVPVLIFANKQDLLTAA------PA---SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp --GGTTCCEEEEEECTTSTTCC------CH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred --hhcCCCEEEEEECcCcccCC------CH---HHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 00178999999999996421 11 11111111 111234567999999999999999999987654
No 157
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.42 E-value=3.7e-13 Score=118.10 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
++|+++|+||+|+... +.+.. + .+.++.++|+.+++|||+++.+++.+++.+...+
T Consensus 108 ~~p~ilv~nK~Dl~~~----~~~~~-~-------~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 108 GANLLLALNKMDLAKS----LGIEI-D-------VDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp TCCEEEEEECHHHHHH----TTCCC-C-------HHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CCCEEEEEEchHhccc----cChhh-H-------HHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999642 22222 1 3567777899999999999999999999997654
No 158
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.42 E-value=6.5e-14 Score=141.94 Aligned_cols=99 Identities=12% Similarity=0.033 Sum_probs=52.1
Q ss_pred ChhhHHHHHHHHHhhcccc---cccchhhhhhccccCccccCCCccccccc--cCCcEEEEEeCcchhhhhhhcccCChh
Q psy13975 131 GAHDYQAGRCCKLLTFARL---RAHLIELLSFYLFYSSVSVIPGEGILERN--LGVDIVVVVTKTDYMSTLEKDFYYKEE 205 (415)
Q Consensus 131 SgGekQRl~LArAl~~~~~---~~~lde~~s~~~~~~~~~lpL~e~~l~~n--lgvpiivV~~K~Dl~~~lE~~~~~~~e 205 (415)
+.+++||++|+|++...+. .+.++||++. .+-+++. .+... -++++++|+||+|++.. .
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~------~L~~~d~-~~lk~L~~~v~iIlVinK~Dll~~---------~ 183 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH------GLKPLDI-EFMKRLHEKVNIIPLIAKADTLTP---------E 183 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC------SCCHHHH-HHHHHHTTTSEEEEEEESTTSSCH---------H
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCccc------CCCHHHH-HHHHHHhccCcEEEEEEcccCccH---------H
Confidence 5567788889999876665 4455776421 1111110 11111 18999999999998642 3
Q ss_pred hHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHH
Q psy13975 206 HFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 206 ~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h 245 (415)
+...+.+.++..+..+|+.++++|++++.+++.++..+..
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 3444456678888889999999999999999887776643
No 159
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.42 E-value=7.6e-14 Score=124.21 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||+++|.+-.. ++.|. ....+. -....+.+|++.|...+..+. ...+.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~----~~~~~~----~~~~~~~i~Dt~G~~~~~~~~-----~~~~~~ 88 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGS----NVEEIV----INNTRFLMWDIGGQESLRSSW-----NTYYTN 88 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSS----SCEEEE----ETTEEEEEEEESSSGGGTCGG-----GGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCccCCcCce----eeEEEE----ECCEEEEEEECCCCHhHHHHH-----HHHhcc
Confidence 5899999999999999999986432 22221 111110 123678999999988776662 333444
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|.. ..+...
T Consensus 89 ~d~ii~v~D~~~~~s-~~~~~~~~~---~~~~~~---------------------------------------------- 118 (181)
T 2h17_A 89 TEFVIVVVDSTDRER-ISVTREELY---KMLAHE---------------------------------------------- 118 (181)
T ss_dssp CCEEEEEEETTCTTT-HHHHHHHHH---HHHTCG----------------------------------------------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHH---HHHhCh----------------------------------------------
Confidence 44 467888888765 444444422 222110
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHH-HHHHHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIR-KFCLKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR-~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
...++|+++|+||+|+... ...++ +.+.+. ..+...+..+++||++++.+++.++++|...
T Consensus 119 --~~~~~piilv~NK~Dl~~~------~~~~~---i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 119 --DLRKAGLLIFANKQDVKEC------MTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp --GGTTCEEEEEEECTTSTTC------CCHHH---HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred --hhCCCeEEEEEECCCcccC------CCHHH---HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 0117899999999999642 11111 111111 1112346689999999999999999998754
No 160
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.41 E-value=6.7e-13 Score=129.02 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=106.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-C----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-I----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+++|+|+.|+|||||++++.+ . ..++.+... . ..+. .......+.+|+++|...+..+ ...++.
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~--~-~~~~--~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~ 225 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY--S-ANVM--VDGKPVNLGLWDTAGLEDYDRL-----RPLSYP 225 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE--E-EEEE--ETTEEEEEEEEEECCCGGGTTT-----GGGGCT
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee--E-EEEE--ECCEEEEEEEEeCCCchhhhHH-----HHHhcc
Confidence 5899999999999999999873 2 223333322 1 1111 1223456789999998877655 333445
Q ss_pred chh-hHHHHhcCCchhHHHHH-HhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDEL-HNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGE 172 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l-~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e 172 (415)
... +++++|.+++.+ ++.+ ..|...+.... +
T Consensus 226 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------~--- 258 (332)
T 2wkq_A 226 QTDVFLICFSLVSPAS-FHHVRAKWYPEVRHHC-------------------------------------------P--- 258 (332)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHC-------------------------------------------T---
T ss_pred CCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhhC-------------------------------------------C---
Confidence 554 467889888766 3444 35644333221 0
Q ss_pred cccccccCCcEEEEEeCcchhhhhhh--------cccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHH
Q psy13975 173 GILERNLGVDIVVVVTKTDYMSTLEK--------DFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 173 ~~l~~nlgvpiivV~~K~Dl~~~lE~--------~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l 243 (415)
++|+++|+||+|+....+. .+.+.. +..+.+|.++|+ .+++||++++.+++.++.+|
T Consensus 259 -------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 259 -------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-------PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp -------TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH-------HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred -------CCcEEEEEEchhcccccchhhhccccccccccH-------HHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHH
Confidence 6899999999999653111 012222 236788888997 89999999999999999999
Q ss_pred HHHHhC
Q psy13975 244 AHRLYG 249 (415)
Q Consensus 244 ~h~l~~ 249 (415)
...++.
T Consensus 325 ~~~~~~ 330 (332)
T 2wkq_A 325 IRAVLC 330 (332)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 988764
No 161
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.41 E-value=5.6e-13 Score=118.60 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=28.4
Q ss_pred eEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHh
Q psy13975 8 VFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 8 ~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~ 40 (415)
||||+|++| ++++|+|+||||||||++++.
T Consensus 1 ~vsl~i~~g---ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPEL---SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESS---EEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCC---EEEEEECCCCCCHHHHHHHHc
Confidence 689999999 999999999999999999865
No 162
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.40 E-value=1.6e-13 Score=122.98 Aligned_cols=155 Identities=18% Similarity=0.258 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC-----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI-----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLP 94 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl-----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~ 94 (415)
-+|+|+|+.|+|||||+++|.+- ..|+.|.. +.... .....+.+|+++|...+..+... ++.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~------~~~~~~~l~Dt~G~~~~~~~~~~-----~~~ 89 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN--MRKIT------KGNVTIKLWDIGGQPRFRSMWER-----YCR 89 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE--EEEEE------ETTEEEEEEEECCSHHHHTTHHH-----HHT
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCcee--EEEEE------eCCEEEEEEECCCCHhHHHHHHH-----HHc
Confidence 58999999999999999999742 22333432 22111 23467889999998876655322 223
Q ss_pred chh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 95 HTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 95 ~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
+.. +++++|.+++.+ ++.+..|. ...+...
T Consensus 90 ~~d~ii~v~D~~~~~s-~~~~~~~~---~~~~~~~--------------------------------------------- 120 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEK-IEASKNEL---HNLLDKP--------------------------------------------- 120 (188)
T ss_dssp TCSEEEEEEETTCGGG-HHHHHHHH---HHHHTCG---------------------------------------------
T ss_pred cCCEEEEEEECCCHHH-HHHHHHHH---HHHHhCc---------------------------------------------
Confidence 333 467788887765 44444442 2222110
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHH-HHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYI-RKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~L-R~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
...++|+++|+||+|+.... ..++ +.+.+ ...+...+..+++||++++.+++.++++|...+.
T Consensus 121 ---~~~~~piilv~NK~Dl~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 121 ---QLQGIPVLVLGNKRDLPGAL------DEKE---LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp ---GGTTCCEEEEEECTTSTTCC------CHHH---HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred ---ccCCCCEEEEEECCCCccCC------CHHH---HHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00178999999999996421 1111 11111 1112234667999999999999999999987653
No 163
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=123.95 Aligned_cols=55 Identities=31% Similarity=0.353 Sum_probs=43.8
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH-hCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK-FGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~-~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
++|+++|+||+|+... +. + ..++.+|.+ .++.+++||++++.+++.++..|...+
T Consensus 198 ~~piilV~NK~Dl~~~----~~--------v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 198 KKPIVVVLTKCDEGVE----RY--------I-RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TCCEEEEEECGGGBCH----HH--------H-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEEccccccc----HH--------H-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999998531 11 1 235677766 488999999999999999999998765
No 164
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.40 E-value=7.7e-14 Score=125.83 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||++++.+-.. |+.|. ....+ ......+.+|+++|...+..+... .+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~----~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~ 96 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETV----EYKNICFTVWDVGGQDKIRPLWRH-----YFQN 96 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTE----EEEEE----EETTEEEEEEECC-----CTTHHH-----HHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCccccCCcCce----eEEEE----EECCEEEEEEECCCCHhHHHHHHH-----Hhcc
Confidence 6899999999999999999975322 22221 11111 112367899999998766555222 2223
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|. .+.+...
T Consensus 97 ~d~iilv~D~~~~~s-~~~~~~~l---~~~~~~~---------------------------------------------- 126 (192)
T 2b6h_A 97 TQGLIFVVDSNDRER-VQESADEL---QKMLQED---------------------------------------------- 126 (192)
T ss_dssp CCEEEEEEETTCGGG-HHHHHHHH---HHHHTCG----------------------------------------------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH---HHHhccc----------------------------------------------
Confidence 33 467788888766 44444442 2222110
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHH-HHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQY-IRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~-LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
...++|+++|+||+|+... .. .+.+.+. ....+...+..+++||++++.+++.++++|...+.
T Consensus 127 --~~~~~piilv~NK~Dl~~~------~~---~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 127 --ELRDAVLLVFANKQDMPNA------MP---VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp --GGTTCEEEEEEECTTSTTC------CC---HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred --ccCCCeEEEEEECCCCCCC------CC---HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 0017899999999999642 11 1111111 11122234567999999999999999999987764
No 165
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.40 E-value=8.4e-14 Score=136.30 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=103.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC----CcEEEEeceeecCCCCccccceEEEEEecCcccchh-hhhhccCCCCCCc
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSPE----KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN-LLRFALNQETLPH 95 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p~----~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~-Ll~~~l~~~~~~~ 95 (415)
+++|+|+.|+|||||++++.+-..+. .+..+++.+..+ +...++.+|+++|++.|.. .+ ....++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-----~~~v~LqIWDTAGQErf~~~~l---~~~~yyr~ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-----STLIDLAVMELPGQLNYFEPSY---DSERLFKS 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-----CSSSCEEEEECCSCSSSCCCSH---HHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-----ccEEEEEEEECCCchhccchhh---hhhhhccC
Confidence 47899999999999999887543331 111111122222 1347899999999987742 10 02234556
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
+. +++++|.++. +.+.+..|.+.+.+.-... |
T Consensus 73 a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~----------------------------------------~----- 105 (331)
T 3r7w_B 73 VGALVYVIDSQDE--YINAITNLAMIIEYAYKVN----------------------------------------P----- 105 (331)
T ss_dssp CSEEEEECCCSSC--TTHHHHHHHHHHHHHHHHC----------------------------------------T-----
T ss_pred CCEEEEEEECCch--HHHHHHHHHHHHHHHhhcC----------------------------------------C-----
Confidence 55 4678888875 2344444433222221110 1
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH----hCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK----FGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~----~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+....++. +-++++-.+....+|.+ +|+.++.||+|+ .|++.+|..+++.++.
T Consensus 106 -----~ipillvgNK~DL~~~~~R~----~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 106 -----SINIEVLIHKVDGLSEDFKV----DAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp -----TCEEEEECCCCCSSCSHHHH----HHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred -----CCcEEEEEECcccCchhhhh----hHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 78999999999996431110 01233444456677775 688999999998 6999999999988875
No 166
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.40 E-value=1.2e-13 Score=123.45 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=99.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||++++.+-. .|+.|. ....+. -....+.+|+++|...+..+ ....+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~----~~~~~~----~~~~~~~~~Dt~G~~~~~~~-----~~~~~~~ 89 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGV----NLETLQ----YKNISFEVWDLGGQTGVRPY-----WRCYFSD 89 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTC----CEEEEE----ETTEEEEEEEECCSSSSCCC-----CSSSSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCce----EEEEEE----ECCEEEEEEECCCCHhHHHH-----HHHHhhc
Confidence 689999999999999999997532 233331 111110 12467889999998877655 4445666
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|. .+.+...
T Consensus 90 ~d~ii~v~d~~~~~s-~~~~~~~~---~~~~~~~---------------------------------------------- 119 (189)
T 2x77_A 90 TDAVIYVVDSTDRDR-MGVAKHEL---YALLDED---------------------------------------------- 119 (189)
T ss_dssp CCEEEEEEETTCCTT-HHHHHHHH---HHHHTCS----------------------------------------------
T ss_pred CCEEEEEEeCCCHHH-HHHHHHHH---HHHHhhh----------------------------------------------
Confidence 55 467889888765 34433332 2222110
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHH-HHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYI-RKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~L-R~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
...++|+++|+||+|+.... . .+.+.+.+ ...+...+..+++||++++.+++.++++|.+.+..
T Consensus 120 --~~~~~piilv~nK~Dl~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 120 --ELRKSLLLIFANKQDLPDAA------S---EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp --TTTTCEEEEEEECTTSTTCC------C---HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --hcCCCeEEEEEECCCCcCCC------C---HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 00178999999999996421 1 11111111 12233456689999999999999999999887754
No 167
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.39 E-value=1.3e-12 Score=127.19 Aligned_cols=164 Identities=16% Similarity=0.221 Sum_probs=108.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCCCCC------CCcEEEEeceeecCCCCccccceEEEEEecCcccc-----hhhhhhc
Q psy13975 19 IGNILLISDNSSGKTTLIAKLQGIDSP------EKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH-----SNLLRFA 87 (415)
Q Consensus 19 ~e~v~IlG~nGsGKSTLl~~l~Gl~~p------~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~-----~~Ll~~~ 87 (415)
..+++|+|+.|+|||||++++.+-..+ ..+....+....+ .....+.+|+++|...+ ..+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~---- 73 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-----LGNMTLNLWDCGGQDVFMENYFTKQ---- 73 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-----TTTEEEEEEEECCSHHHHHHHHTTT----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-----CCceEEEEEECCCcHHHhhhhhhhH----
Confidence 378999999999999999998764221 1111122222221 12467899999998765 222
Q ss_pred cCCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCcc
Q psy13975 88 LNQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSV 166 (415)
Q Consensus 88 l~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~ 166 (415)
....+.+.. +++++|.+++.+ ++.+..|...+.+.....
T Consensus 74 -~~~~~~~ad~vi~V~D~t~~~s-~~~l~~~~~~l~~l~~~~-------------------------------------- 113 (307)
T 3r7w_A 74 -KDHIFQMVQVLIHVFDVESTEV-LKDIEIFAKALKQLRKYS-------------------------------------- 113 (307)
T ss_dssp -HHHHHTTCSEEEEEEETTCSCH-HHHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred -HHHHhccCCEEEEEEECCChhh-HHHHHHHHHHHHHHHHhC--------------------------------------
Confidence 222334444 467889888766 666666655444332211
Q ss_pred ccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC---CeEEEeccCCcccHHHHHHHH
Q psy13975 167 SVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG---AGLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 167 ~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G---asli~tS~k~~~n~~~l~~~l 243 (415)
+ ++|+++|+||+|+....++ .+.+......++.+|..+| ..++.||+++ .++..++..+
T Consensus 114 --~----------~~piilv~NK~Dl~~~~~r-----~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~i 175 (307)
T 3r7w_A 114 --P----------DAKIFVLLHKMDLVQLDKR-----EELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQI 175 (307)
T ss_dssp --T----------TCEEEEEEECGGGSCHHHH-----HHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHH
T ss_pred --C----------CCeEEEEEecccccchhhh-----hHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHH
Confidence 1 7999999999999742111 1122255567889999998 6899999999 8888888888
Q ss_pred HHHHhC
Q psy13975 244 AHRLYG 249 (415)
Q Consensus 244 ~h~l~~ 249 (415)
++.++.
T Consensus 176 v~~li~ 181 (307)
T 3r7w_A 176 VCSLIP 181 (307)
T ss_dssp HHTTCS
T ss_pred HHHHcC
Confidence 877654
No 168
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.38 E-value=8.5e-13 Score=133.66 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=106.1
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCC-----cEEEEeceeecCCCCccccceEEEEEecCcccc
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK-----GLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~-----G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~ 80 (415)
-++++|++..| +.++|+|+|||||||||++|+|...... +........... ....+.+|++.+....
T Consensus 147 ~~~i~lelk~g---~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~-----~~~~~~l~DtpGli~~ 218 (416)
T 1udx_A 147 KRRLRLELMLI---ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-----EEERFTLADIPGIIEG 218 (416)
T ss_dssp EEEEEEEECCS---CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-----SSCEEEEEECCCCCCC
T ss_pred EeeeeeEEcCC---CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec-----CcceEEEEeccccccc
Confidence 46899999999 9999999999999999999998742100 000000001110 1234566776653211
Q ss_pred ----hhhh-hhccCCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccch
Q psy13975 81 ----SNLL-RFALNQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLI 154 (415)
Q Consensus 81 ----~~Ll-~~~l~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~ld 154 (415)
..+. .+. . .+..+. ++.++|++ +..+..+ |.+++|++.+++++.
T Consensus 219 a~~~~~L~~~fl-~--~~era~~lL~vvDls----------------~~~~~~l--s~g~~el~~la~aL~--------- 268 (416)
T 1udx_A 219 ASEGKGLGLEFL-R--HIARTRVLLYVLDAA----------------DEPLKTL--ETLRKEVGAYDPALL--------- 268 (416)
T ss_dssp GGGSCCSCHHHH-H--HHTSSSEEEEEEETT----------------SCHHHHH--HHHHHHHHHHCHHHH---------
T ss_pred hhhhhhhhHHHH-H--HHHHHHhhhEEeCCc----------------cCCHHHH--HHHHHHHHHHhHHhh---------
Confidence 0010 000 0 000011 12223322 1223444 888999999988887
Q ss_pred hhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcc
Q psy13975 155 ELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDK 234 (415)
Q Consensus 155 e~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~ 234 (415)
..|.++|+||+|+... + ....++..+.+.|..+|++|++++.
T Consensus 269 -------------------------~~P~ILVlNKlDl~~~---------~----~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 269 -------------------------RRPSLVALNKVDLLEE---------E----AVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp -------------------------HSCEEEEEECCTTSCH---------H----HHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred -------------------------cCCEEEEEECCChhhH---------H----HHHHHHHHHHhcCCeEEEEECCCcc
Confidence 5688999999998531 1 1223455555678899999999999
Q ss_pred cHHHHHHHHHHHHhCCC
Q psy13975 235 NCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 235 n~~~l~~~l~h~l~~~~ 251 (415)
+++.|+..|...+...+
T Consensus 311 gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 311 GLPALKEALHALVRSTP 327 (416)
T ss_dssp THHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999887654
No 169
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.37 E-value=8.8e-13 Score=120.30 Aligned_cols=80 Identities=21% Similarity=0.196 Sum_probs=48.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC--CcEEEEeceeecCCCCccccceEEEEEecCcccchh-hhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPE--KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSN-LLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~--~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~-Ll~~~l~~~~~~~~ 96 (415)
-+++|+|+.|+|||||+++|.+-..+. .+....+....+. ......+.+|+++|...+.. +.. .++...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~~~ 79 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN---NNRGNSLTLIDLPGHESLRFQLLD-----RFKSSA 79 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS---STTCCEEEEEECCCCHHHHHHHHH-----HHGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEec---CCCccEEEEEECCCChhHHHHHHH-----HHHhhC
Confidence 689999999999999999997532111 1111111122221 11246789999999887765 421 124444
Q ss_pred h-hHHHHhcCCc
Q psy13975 97 M-VMLVVSMTTP 107 (415)
Q Consensus 97 ~-v~~~~d~~~p 107 (415)
. +++++|.+..
T Consensus 80 ~~~i~v~d~~~~ 91 (214)
T 2fh5_B 80 RAVVFVVDSAAF 91 (214)
T ss_dssp EEEEEEEETTTH
T ss_pred CEEEEEEECCCc
Confidence 4 4667787764
No 170
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.36 E-value=4.5e-15 Score=136.83 Aligned_cols=120 Identities=15% Similarity=0.100 Sum_probs=67.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhh
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNL 83 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~L 83 (415)
.+|+++ .+| ++++|+|+||||||||+++|+|+ +|++|.+. ..++.........++++ +.+.+ ..++
T Consensus 14 ~~l~~i----~~G---e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~---~~~~~~~~~~~~~~ig~--v~q~~-~enl 79 (208)
T 3b85_A 14 HYVDAI----DTN---TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS---RIILTRPAVEAGEKLGF--LPGTL-NEKI 79 (208)
T ss_dssp HHHHHH----HHC---SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS---EEEEEECSCCTTCCCCS--SCC-------
T ss_pred HHHHhc----cCC---CEEEEECCCCCCHHHHHHHHhcC-CCcCCeee---eEEecCCchhhhcceEE--ecCCH-HHHH
Confidence 356664 789 99999999999999999999999 99999853 11111100111122222 22211 1111
Q ss_pred hhhccCCCCCCchhhHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhh
Q psy13975 84 LRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLS 158 (415)
Q Consensus 84 l~~~l~~~~~~~~~v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s 158 (415)
. .+.. .... .+... .. ...+++.++. ++ |||||++||||+..++..+++|||++
T Consensus 80 ~-------~~~~-~~~~--~~~~~-------~~-~~~~~~~l~~-gl--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 80 D-------PYLR-PLHD--ALRDM-------VE-PEVIPKLMEA-GI--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp C-------TTTH-HHHH--HHTTT-------SC-TTHHHHHHHT-TS--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred H-------HHHH-HHHH--HHHHh-------cc-HHHHHHHHHh-CC--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 0 0000 0000 00000 00 1223344443 34 99999999999999999888899865
No 171
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.36 E-value=1.3e-13 Score=122.22 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC----CCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI----DSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl----~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|++|+|||||++++.+- ..|+.|... ..... ....+.+|+++|...+..+ ....+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~------~~~~~~i~Dt~G~~~~~~~-----~~~~~~~ 85 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSY------KNLKLNVWDLGGQTSIRPY-----WRCYYAD 85 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEE------TTEEEEEEEEC----CCTT-----GGGTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEE------CCEEEEEEECCCCHhHHHH-----HHHHhcc
Confidence 78999999999999999999842 223333211 11111 1367889999998766555 3334555
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|. .+.....
T Consensus 86 ~d~ii~v~d~~~~~s-~~~~~~~~---~~~~~~~---------------------------------------------- 115 (183)
T 1moz_A 86 TAAVIFVVDSTDKDR-MSTASKEL---HLMLQEE---------------------------------------------- 115 (183)
T ss_dssp EEEEEEEEETTCTTT-HHHHHHHH---HHHTTSS----------------------------------------------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH---HHHHcCh----------------------------------------------
Confidence 55 467888887655 44444432 2222110
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHH-HHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRK-FCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~-l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
...++|+++|+||+|+... ...++ +.+.+.. .+...+..+++||++++.+++.++++|.+.+.
T Consensus 116 --~~~~~piilv~nK~Dl~~~------~~~~~---i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 116 --ELQDAALLVFANKQDQPGA------LSASE---VSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp --TTSSCEEEEEEECTTSTTC------CCHHH---HHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred --hhCCCeEEEEEECCCCCCC------CCHHH---HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0117899999999999642 11111 1111110 01123457999999999999999999987764
No 172
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.35 E-value=1.2e-12 Score=116.42 Aligned_cols=56 Identities=23% Similarity=0.244 Sum_probs=45.1
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe-------EEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG-------LFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas-------li~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+.... ...++.++.++|.. +++||++++.+++.++++|.+.+..
T Consensus 122 ~~piilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 122 DIPTIVAVNKLDKIKNV--------------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TCCEEEEEECGGGCSCH--------------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCceEEEeehHhccCcH--------------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 78999999999996421 12356777777764 7999999999999999999887754
No 173
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.35 E-value=1e-13 Score=132.70 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=84.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcc-cchhhhhhccCCCCCCchhh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP-AHSNLLRFALNQETLPHTMV 98 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~-~~~~Ll~~~l~~~~~~~~~v 98 (415)
-+++|+|+||||||||+++|+|+..|+.|.+. +.+.++.. ......+++. .+.. .+..+ ...-+.. +..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~-~~g~~i~~--~~~~~~i~~v--~q~~~~~~~l-tv~d~~~-~g~--- 72 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSW-NREEKIPK--TVEIKAIGHV--IEEGGVKMKL-TVIDTPG-FGD--- 72 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-------------CCC--CCSCCEEEES--CC----CCEE-EEECCCC---C---
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccc-cCCcccCc--ceeeeeeEEE--eecCCCcCCc-eEEechh-hhh---
Confidence 47899999999999999999999999999865 33333321 1112233332 2211 11111 0000000 000
Q ss_pred HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc--c
Q psy13975 99 MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL--E 176 (415)
Q Consensus 99 ~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l--~ 176 (415)
...-...|..+..+-. ....+.....| |+||+||+++|||+.. ...+|+++. .+-|++...+ .
T Consensus 73 --~~~~~~~~~~i~~~~~-~~~~~~~~~~L--S~G~~qrv~iaRal~~---lllldep~~-------gL~~lD~~~l~~L 137 (270)
T 3sop_A 73 --QINNENCWEPIEKYIN-EQYEKFLKEEV--NIARKKRIPDTRVHCC---LYFISPTGH-------SLRPLDLEFMKHL 137 (270)
T ss_dssp --CSBCTTCSHHHHHHHH-HHHHHHHHHHS--CTTCCSSCCCCSCCEE---EEEECCCSS-------SCCHHHHHHHHHH
T ss_pred --hcccHHHHHHHHHHHH-HHHHhhhHHhc--Ccccchhhhhheeeee---eEEEecCCC-------cCCHHHHHHHHHH
Confidence 0000112222222222 13344555666 9999999999999873 334455422 1112221111 1
Q ss_pred cccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEE
Q psy13975 177 RNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLF 226 (415)
Q Consensus 177 ~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli 226 (415)
... +++++|.+|+|.+.. ++...+.+.++.....+|..++
T Consensus 138 ~~~-~~vI~Vi~K~D~lt~---------~e~~~~k~~i~~~l~~~~i~i~ 177 (270)
T 3sop_A 138 SKV-VNIIPVIAKADTMTL---------EEKSEFKQRVRKELEVNGIEFY 177 (270)
T ss_dssp HTT-SEEEEEETTGGGSCH---------HHHHHHHHHHHHHHHHTTCCCS
T ss_pred Hhc-CcEEEEEeccccCCH---------HHHHHHHHHHHHHHHHcCcccc
Confidence 122 899999999998742 3444445556655567887765
No 174
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.33 E-value=1.6e-12 Score=116.02 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=48.5
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-CeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-AGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-asli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+... ++.....+.++.++..++ +.++++|++++.+++.++++|...+.
T Consensus 133 ~~p~i~v~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 133 NIPFTIVLTKMDKVKM---------SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp TCCEEEEEECGGGSCG---------GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCCEEEEEEChhcCCh---------HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 7899999999999632 334555566778877755 68999999999999999999987653
No 175
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.7e-14 Score=146.53 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=39.2
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCc-E-EE
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG-L-AL 51 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G-~-il 51 (415)
+.+++|++.+| ++++|+|+||||||||+++|+|+..|+.| . ++
T Consensus 128 y~~vsl~i~~G---e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~ 172 (460)
T 2npi_A 128 LEKIRMSNFEG---PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLY 172 (460)
T ss_dssp HHHHHHHSSSC---CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEE
T ss_pred hhcCceEeCCC---CEEEEECCCCCCHHHHHHHHhCcccccCCceeEE
Confidence 34688999999 99999999999999999999999999999 7 55
No 176
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.33 E-value=7.4e-12 Score=137.55 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=47.3
Q ss_pred CChhhHHHHHHHHHhhccc---ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhh
Q psy13975 130 IGAHDYQAGRCCKLLTFAR---LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEH 206 (415)
Q Consensus 130 lSgGekQRl~LArAl~~~~---~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~ 206 (415)
|||||+||++|||+|..++ ..+++||| +.+++.+.
T Consensus 806 LSGGErQRV~LAraL~~~p~~p~LLILDEP------------------------------------------TsGLD~~~ 843 (916)
T 3pih_A 806 LSGGEAQRIKLASELRKRDTGRTLYILDEP------------------------------------------TVGLHFED 843 (916)
T ss_dssp CCHHHHHHHHHHHHHTSCCCSSEEEEEEST------------------------------------------TTTCCHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCEEEEECC------------------------------------------CCCCCHHH
Confidence 4999999999999998543 34455554 56788888
Q ss_pred HHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 207 FDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 207 ~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.+.+++.|++++. .|.+++++||.
T Consensus 844 ~~~L~~lL~~L~~-~G~TVIvI~Hd 867 (916)
T 3pih_A 844 VRKLVEVLHRLVD-RGNTVIVIEHN 867 (916)
T ss_dssp HHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 9999999999964 59999999943
No 177
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.32 E-value=1.7e-12 Score=116.24 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=43.4
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHH-HHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRK-FCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~-l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
++|+++|+||+|+... ++.....+.+++ ++...+..++++|++++.+++.++++|...+
T Consensus 134 ~~p~i~v~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 134 GIPVIVIATKADKIPK---------GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCEEEEEECGGGSCG---------GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCh---------HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 7899999999999742 112222222333 5545678999999999999999999997654
No 178
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=4.1e-12 Score=113.05 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+... +.+.. . ++.++.++|+.+++||++++.+++.+++++...+.+
T Consensus 112 ~~piilv~nK~Dl~~~----~~~~~-~-------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 112 GANLLLALNKMDLAKS----LGIEI-D-------VDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp TCCEEEEEECHHHHHH----TTCCC-C-------HHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEhhhcccc----ccchH-H-------HHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 7899999999999642 22321 2 467778889999999999999999999999887765
No 179
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.31 E-value=1.6e-12 Score=114.42 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=91.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPE---KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~---~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
.+|+|+|+.|+|||||+++|.+-.... .+....+....+ .-....+.+|+++|...+..+ ....+...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~~~ 79 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQV----TVNDKKITFLDTPGHEAFTTM-----RARGAQVT 79 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEE----EETTEEEEESCCCSSSSSSCS-----CCSSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEE----EeCCceEEEEECCCCHHHHHH-----HHHHHhhC
Confidence 689999999999999999998642211 111000010000 011245678999998776655 33344444
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|.+.+.. ..|.+.+.... .
T Consensus 80 d~~i~v~d~~~~~~-----~~~~~~l~~~~-~------------------------------------------------ 105 (178)
T 2lkc_A 80 DIVILVVAADDGVM-----PQTVEAINHAK-A------------------------------------------------ 105 (178)
T ss_dssp CEEEEEEETTCCCC-----HHHHHHHHHHG-G------------------------------------------------
T ss_pred CEEEEEEECCCCCc-----HHHHHHHHHHH-h------------------------------------------------
Confidence 4 456677666321 11111111110 0
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC--CeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG--AGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G--asli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
.++|+++|+||+|+... +.++.....+..+.++.++| ..+++||++++.+++.++++|...+-..
T Consensus 106 ---~~~p~ilv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 106 ---ANVPIIVAINKMDKPEA-------NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp ---GSCCEEEEEETTTSSCS-------CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred ---CCCCEEEEEECccCCcC-------CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 17899999999999642 11111111111222333444 5899999999999999999998776543
No 180
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.30 E-value=1e-11 Score=135.44 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=31.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHH-HhC
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAK-LQG 41 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~-l~G 41 (415)
.+|+||||+|+.| ++++|+|+||||||||++. |.|
T Consensus 511 ~~L~~vsl~i~~G---eiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 511 NNLDNLDVRFPLG---VMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TTEEEEEEEEESS---SEEEEECCTTSSHHHHCCCCCHH
T ss_pred cccccceEEEcCC---CEEEEEcCCCcCHHHHHHHHHHH
Confidence 3699999999999 9999999999999999996 553
No 181
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.29 E-value=3.9e-12 Score=115.48 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=43.5
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC--CeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG--AGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G--asli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+... .+.......++.++.+.+ ...+.||++++.+++.++++|.+.+-
T Consensus 137 ~~~~~~v~nK~D~~s~---------~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 137 NIAVLVLLTKADKLAS---------GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp TCCEEEEEECGGGSCH---------HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCCeEEEEecccCCCc---------hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 7899999999998642 122222334566666665 45678999999999999999976543
No 182
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.28 E-value=2.3e-12 Score=111.34 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=41.5
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l 247 (415)
++|+++|+||+|+... +++ ++.++ ++|+ .++.+|++++.+++.+++++...+
T Consensus 108 ~~p~ilv~nK~Dl~~~--------~~~-------~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 108 GKPVILVATKVDDPKH--------ELY-------LGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp TCCEEEEEECCCSGGG--------GGG-------CGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCCEEEEEECcccccc--------hHh-------HHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 7899999999999753 111 34455 6788 799999999999999999997653
No 183
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.26 E-value=8.3e-12 Score=115.51 Aligned_cols=62 Identities=11% Similarity=-0.037 Sum_probs=48.1
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC--CeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG--AGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G--asli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+... +.+..+ ....++.++..+| +.+++||++++.+++.++++|...+..
T Consensus 142 ~~piilv~nK~Dl~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCNM----DSLSID----NKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CCCEEEEEECGGGCC------CCCHH----HHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCcccCCc----hhhHHH----HHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 7899999999999642 233322 2234677777888 899999999999999999999888764
No 184
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.6e-12 Score=127.90 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=92.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+|+|+|+.|+|||||+++|.+-.. |+.+.. +...+ .....+.+|+++|+..|..+. ...+..
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~--~~~~~------~~~~~l~i~Dt~G~~~~~~~~-----~~~~~~ 232 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVE------YKNISFTVWDVGGQDKIRPLW-----RHYFQN 232 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEE--EEEEE------ETTEEEEEEECC-----CCSH-----HHHHTT
T ss_pred ceEEEECCCCccHHHHHHHHhCCCCCCcccccceE--EEEEe------cCcEEEEEEECCCCHhHHHHH-----HHHhcc
Confidence 3799999999999999999986432 222221 11111 123578999999987776552 222334
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|. .+.+... .
T Consensus 233 ad~vilV~D~~~~~s-~~~~~~~~---~~~~~~~--------------------------------------~------- 263 (329)
T 3o47_A 233 TQGLIFVVDSNDRER-VNEAREEL---MRMLAED--------------------------------------E------- 263 (329)
T ss_dssp EEEEEEEEETTCSSS-HHHHHHHH---HHHHTCG--------------------------------------G-------
T ss_pred CCEEEEEEECCchHH-HHHHHHHH---HHHHhhh--------------------------------------c-------
Confidence 44 467888887766 44443332 1222110 0
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHH-HHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYI-RKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~L-R~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
.-++|++||+||+|+.... .. +.+.+.+ ...+...+..+++||++++.+++.+++.|...+..
T Consensus 264 ---~~~~piilV~NK~Dl~~~~------~~---~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 264 ---LRDAVLLVFANKQDLPNAM------NA---AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp ---GTTCEEEEEEECTTSTTCC------CH---HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred ---cCCCeEEEEEECccCCccc------CH---HHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 0178999999999996421 11 1111111 11222345579999999999999999999887754
No 185
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.25 E-value=1.6e-11 Score=134.95 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=31.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHH
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKL 39 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l 39 (415)
.+|+||||+|+.| ++++|+|+||||||||++.|
T Consensus 656 ~~Lk~Vsl~I~~G---eivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 656 HNLRGIDVSFPLG---VLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TTCCSEEEEEESS---SEEEEECSTTSSHHHHHTTT
T ss_pred ccccCceEEECCC---CEEEEEcCCCCCHHHHHHHH
Confidence 4699999999999 99999999999999999985
No 186
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.25 E-value=3.7e-13 Score=119.29 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=38.6
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
++|+++|+||+|+... ... ++..++..+++|||+++.+++.++++|...+
T Consensus 115 ~~p~ilv~NK~Dl~~~-----~~~-------------~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 115 KLPITVVRNKADITGE-----TLG-------------MSEVNGHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TCCEEEEEECHHHHCC-----CCE-------------EEEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred CCCEEEEEECccCCcc-----hhh-------------hhhccCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 7899999999999531 110 1122577899999999999999999997664
No 187
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.24 E-value=4.9e-12 Score=138.51 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHH
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKL 39 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l 39 (415)
.+|+||||+|+.| ++++|+|+||||||||++.+
T Consensus 638 ~~Lk~Vsl~I~~G---eiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 638 HNLKNVSVKIPLG---TFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SSCCSEEEEEESS---SEEECCBCTTSSHHHHHTTT
T ss_pred cccccceEEEcCC---CEEEEEcCCCCCHHHHHHHH
Confidence 4699999999999 99999999999999999975
No 188
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.23 E-value=1.3e-11 Score=118.13 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=45.3
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
++|+++|+||+|+... +++.. . +..++..+|+.++.||++++.+++.+++.+.+.+
T Consensus 107 ~~p~ilv~NK~Dl~~~----~~~~~-~-------~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 107 GIPVTIALNMIDVLDG----QGKKI-N-------VDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CSCEEEEEECHHHHHH----TTCCC-C-------HHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CCCEEEEEEChhhCCc----CCcHH-H-------HHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 8999999999999642 23332 2 4567777899999999999999999999997754
No 189
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.22 E-value=1.1e-12 Score=121.38 Aligned_cols=41 Identities=24% Similarity=0.091 Sum_probs=28.6
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
.|+||||+|++| ++++|+||||||||||+++|+|++ | |.+.
T Consensus 12 ~l~~isl~i~~G---~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~ 52 (218)
T 1z6g_A 12 SGLVPRGSMNNI---YPLVICGPSGVGKGTLIKKLLNEF-P--NYFY 52 (218)
T ss_dssp ----------CC---CCEEEECSTTSSHHHHHHHHHHHS-T--TTEE
T ss_pred cccCCceecCCC---CEEEEECCCCCCHHHHHHHHHhhC-C--CcEE
Confidence 589999999999 999999999999999999999988 5 7754
No 190
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.19 E-value=4e-11 Score=123.95 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=99.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|..|+|||||+++|.+-. .|+.|.. +..++. ....+.+|+++|...+..+ ...++..
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~--~~~~~~------~~~~~~l~Dt~G~~~~~~~-----~~~~~~~ 389 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN--VETVTY------KNVKFNVWDVGGQDKIRPL-----WRHYYTG 389 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE--EEEEES------SSCEEEEEEECCCGGGSGG-----GGGGGTT
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcCCcccee--EEEEEe------CCEEEEEEECCCcHHHHHH-----HHHHhcc
Confidence 589999999999999999998532 2344432 222222 2357899999998887766 3444555
Q ss_pred hh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCccc
Q psy13975 96 TM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174 (415)
Q Consensus 96 ~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~ 174 (415)
.. +++++|.+++.+ ++.+..|... .+...
T Consensus 390 ad~~i~V~D~~~~~s-~~~~~~~~~~---~~~~~---------------------------------------------- 419 (497)
T 3lvq_E 390 TQGLIFVVDCADRDR-IDEARQELHR---IINDR---------------------------------------------- 419 (497)
T ss_dssp CCEEEEEEETTCGGG-HHHHHHHHHH---HHTSG----------------------------------------------
T ss_pred CCEEEEEEECcchhH-HHHHHHHHHH---Hhhhh----------------------------------------------
Confidence 55 467889888766 4444444222 22110
Q ss_pred cccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHH-HHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 175 LERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYI-RKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 175 l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~L-R~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
...++|++||+||+|+... .+.+ .+.+.+ ..++...++.+++||++++.+++.++++|...+-.
T Consensus 420 --~~~~~p~ilv~NK~Dl~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 420 --EMRDAIILIFANKQDLPDA------MKPH---EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp --GGTTCEEEEEEECCSSSSC------CCHH---HHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred --hcCCCcEEEEEECCCCCcC------CCHH---HHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 0017999999999998642 1111 111111 11112245569999999999999999999876543
No 191
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.18 E-value=4.5e-12 Score=113.80 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
+++|+|+||||||||+++|+|++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999864
No 192
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.17 E-value=2.2e-10 Score=114.19 Aligned_cols=59 Identities=3% Similarity=-0.035 Sum_probs=47.3
Q ss_pred CChhhHHHHHHHHHhh------cccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCC
Q psy13975 130 IGAHDYQAGRCCKLLT------FARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYK 203 (415)
Q Consensus 130 lSgGekQRl~LArAl~------~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~ 203 (415)
||+||+||++||+|+. .++..+++|| |+.+++
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~lllDE------------------------------------------pt~~LD 317 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDAFFIDE------------------------------------------GFSSLD 317 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEES------------------------------------------CCTTSC
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCEEEEeC------------------------------------------CCccCC
Confidence 5999999999999998 3455555555 455788
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 204 EEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 204 ~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.+..+.+...|+.++ +.|.+++++||.
T Consensus 318 ~~~~~~~~~~l~~l~-~~g~tvi~itH~ 344 (365)
T 3qf7_A 318 TENKEKIASVLKELE-RLNKVIVFITHD 344 (365)
T ss_dssp HHHHHHHHHHHHGGG-GSSSEEEEEESC
T ss_pred HHHHHHHHHHHHHHH-hCCCEEEEEecc
Confidence 888999999999986 459999999954
No 193
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.16 E-value=2.1e-11 Score=127.49 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEecee------ecCCCCccccceEEEEEecCcccchhhhhhcc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-----SPEKGLALEYAYI------NVSDEYREDHTRLGVWILDGEPAHSNLLRFAL 88 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-----~p~~G~il~~~~~------~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l 88 (415)
-+|+|+|..|||||||+++|.+-. .|+.|.-. ... .+..........+.+|+++|...+..+...
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~--~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~-- 117 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNV--VTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF-- 117 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCE--EEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEE--EEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH--
Confidence 589999999999999999998743 23333311 111 111111223578999999998776655222
Q ss_pred CCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccc
Q psy13975 89 NQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVS 167 (415)
Q Consensus 89 ~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~ 167 (415)
.+.+.. +++++|.+.. +.+..|...+.+..
T Consensus 118 ---~l~~~d~ii~V~D~s~~----~~~~~~~~~l~~~~------------------------------------------ 148 (535)
T 3dpu_A 118 ---FMTRSSVYMLLLDSRTD----SNKHYWLRHIEKYG------------------------------------------ 148 (535)
T ss_dssp ---HHHSSEEEEEEECGGGG----GGHHHHHHHHHHHS------------------------------------------
T ss_pred ---HccCCcEEEEEEeCCCc----hhHHHHHHHHHHhC------------------------------------------
Confidence 222333 3556776543 33344543332221
Q ss_pred cCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 168 VIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 168 lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l 247 (415)
+ +.|+++|+||+|+... +.+..+. ++.++...|+.++.||++++.+++.++..+...+
T Consensus 149 ----~-------~~pvilV~NK~Dl~~~----~~v~~~~-------~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 149 ----G-------KSPVIVVMNKIDENPS----YNIEQKK-------INERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp ----S-------SCCEEEEECCTTTCTT----CCCCHHH-------HHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred ----C-------CCCEEEEEECCCcccc----cccCHHH-------HHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 0 5799999999999642 3333332 6777778899999999999999999999999888
Q ss_pred hCCC
Q psy13975 248 YGFP 251 (415)
Q Consensus 248 ~~~~ 251 (415)
...+
T Consensus 207 ~~~~ 210 (535)
T 3dpu_A 207 LHPD 210 (535)
T ss_dssp TCTT
T ss_pred hccc
Confidence 7654
No 194
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.16 E-value=9.5e-11 Score=107.26 Aligned_cols=61 Identities=16% Similarity=-0.021 Sum_probs=42.7
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH-------hCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK-------FGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~-------~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+... +......+.++..+.. .+..++.+|++++.+++.++++|...+..
T Consensus 144 ~~p~i~v~nK~Dl~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 144 GKPIHSLLTKCDKLTR---------QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CCCEEEEEECGGGSCH---------HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCEEEEEeccccCCh---------hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 7899999999999742 1122222223332222 46789999999999999999999877643
No 195
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.14 E-value=5.9e-11 Score=115.52 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=45.8
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC--CeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG--AGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G--asli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
++|+++|+||+|+... . + .+...+..++..+| +.++.+|++++.+++.+++.+...+..-
T Consensus 122 ~~pvilV~NK~Dl~~~----~----~---~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 122 NKPVIVVINKIDKIGP----A----K---NVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CCCEEEEEECGGGSSS----G----G---GGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred CCCEEEEEECccCCCC----H----H---HHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 7899999999999621 0 1 12233566666676 7899999999999999999998877543
No 196
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.13 E-value=2.3e-11 Score=111.15 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=85.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC-CCC---CcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID-SPE---KGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPH 95 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~-~p~---~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~ 95 (415)
-+++|+|+.|+|||||+++|.+.. .+. ........+ ....+.+|+++|...+..+....+.. ....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~-~~~~ 82 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT-RAKF 82 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH-HGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh-cccc
Confidence 589999999999999999998643 221 111110011 34578899999988775553222110 0011
Q ss_pred h-hhHHHHhcC-CchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcc
Q psy13975 96 T-MVMLVVSMT-TPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEG 173 (415)
Q Consensus 96 ~-~v~~~~d~~-~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~ 173 (415)
. .+++++|.+ .+.+ ++.+..|...+.......
T Consensus 83 ~~~~i~v~D~~~~~~~-~~~~~~~~~~~~~~~~~~--------------------------------------------- 116 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKK-LTTTAEFLVDILSITESS--------------------------------------------- 116 (218)
T ss_dssp EEEEEEEEETTSCTTC-CHHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred CCEEEEEEECCCChHH-HHHHHHHHHHHHhccccc---------------------------------------------
Confidence 2 246677877 4444 344444432222211100
Q ss_pred ccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccH
Q psy13975 174 ILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNC 236 (415)
Q Consensus 174 ~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~ 236 (415)
...++|+++|+||+|+.... . -++..+.+.+.++.++..+++.++.+|++++.+.
T Consensus 117 ---~~~~~p~ilv~nK~Dl~~~~----~-~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 117 ---CENGIDILIACNKSELFTAR----P-PSKIKDALESEIQKVIERRKKSLNEVERKINEED 171 (218)
T ss_dssp ---STTCCCEEEEEECTTSTTCC----C-HHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred ---ccCCCCEEEEEEchHhcccC----C-HHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 00178999999999996431 1 1234556667788888888999999999988763
No 197
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.11 E-value=1.2e-10 Score=110.40 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=46.5
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+... +++.. . ++.++..+|+.++.||++++.+++.+++.+.+.+-
T Consensus 110 ~~pvilv~NK~Dl~~~----~~i~~-~-------~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 110 EKKVILAMTAIDEAKK----TGMKI-D-------RYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TCCEEEEEECHHHHHH----TTCCB-C-------HHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCc----cchHH-H-------HHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 8999999999999642 23322 1 46678888999999999999999999999987654
No 198
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.11 E-value=1.4e-10 Score=110.01 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=44.1
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
++|+++|+||+|+... +++.. . +..++...|+.++.+|++++.+++.+++.+.+.
T Consensus 110 ~~pvilv~NK~Dl~~~----~~~~~-~-------~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 110 GKPVVVALNMMDIAEH----RGISI-D-------TEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CSCEEEEEECHHHHHH----TTCEE-C-------HHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCCEEEEEEChhcCCc----CCcHH-H-------HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 8999999999999753 22221 1 345667789999999999999999999999765
No 199
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.06 E-value=6.2e-12 Score=122.23 Aligned_cols=49 Identities=27% Similarity=0.235 Sum_probs=42.1
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeec
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINV 58 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v 58 (415)
++.++|++.+| ++++|+|+||||||||+++|+|++.|+.|.+. +...+.
T Consensus 90 ~~~l~~~~~~g---~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~-l~g~d~ 138 (302)
T 3b9q_A 90 KTELQLGFRKP---AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-MAAGDT 138 (302)
T ss_dssp CCSCCCCSSSC---EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EECCCC
T ss_pred ccccccccCCC---cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE-EEeecc
Confidence 35788999999 99999999999999999999999999999876 444443
No 200
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.05 E-value=1.7e-11 Score=124.37 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=74.2
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh---CCCCCCCc
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY---GFPFRTSA 256 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~---~~~f~~~a 256 (415)
++|+++|+||+|+.... .. +..+.++.++|..++++|++++.+++.+++.|...+. .+++ ...
T Consensus 140 ~~piIvV~NK~Dl~~~~----~~---------~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~~e~~l-~~d 205 (423)
T 3qq5_A 140 EIPFVVVVNKIDVLGEK----AE---------ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEIPY-LGD 205 (423)
T ss_dssp TCCEEEECCCCTTTTCC----CT---------HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCCCCCCS-CSC
T ss_pred CCCEEEEEeCcCCCCcc----HH---------HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhhccCcc-hhh
Confidence 78999999999996421 11 2356777788999999999999999999999998883 3332 112
Q ss_pred ceeeCCeeEEeCCCCccc--------cccccccccCcCCCCCcccccccCCCC----CCCCCCCCccccCcHHHHH
Q psy13975 257 LIVEKDAVLIPSGWDNMK--------KIGILYENMQSIKPDDYYTDVITKPIV----RKPISREQDTLVEDEQSFL 320 (415)
Q Consensus 257 ~v~d~d~i~iP~gwDs~~--------kI~~l~e~~~~~~~~~~~~~~i~~p~~----~~~~~~~~~~~~~d~q~fl 320 (415)
.+-..|.++...-+|... ....+++.++ +.|..++.+-.. -........+...|.|+|.
T Consensus 206 Lv~~gd~v~lv~pid~~~pkgr~ilp~~~~ird~l~-----~~~~~~~~~~~~l~~~l~~l~~~~~lv~tdsq~~~ 276 (423)
T 3qq5_A 206 LIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREALD-----REAIALVVKERELRYVMENIGMKPKLVITDSQVAM 276 (423)
T ss_dssp CCCTTCCEEEECCCSCCSSTTCCCHHHHHHHHHHHH-----TTCEEEECCSTTHHHHHHHCSSCCSCCCBCTTHHH
T ss_pred ccccCceEEEEeeccccCcCCccccchHHHHHHHHH-----hhhHHHHhhHHHHHHHHHhcCCCccEEEeccHHHH
Confidence 333345555555544332 1223555443 223333333221 0011234566778999984
No 201
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.05 E-value=9.5e-11 Score=111.67 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=45.4
Q ss_pred CcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 181 VDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 181 vpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
+|+++|+||+|+... ++...+ .+.++.+.|+.++.||++++.+++.+++.+.+.+-.
T Consensus 110 ~p~ilv~NK~Dl~~~----~~~~~~--------~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 110 KNIILVLNKFDLLKK----KGAKID--------IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp CSEEEEEECHHHHHH----HTCCCC--------HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred CCEEEEEEChhcCcc----cccHHH--------HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 899999999999753 222221 456777789999999999999999999999877644
No 202
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.02 E-value=1.4e-09 Score=106.33 Aligned_cols=59 Identities=7% Similarity=0.014 Sum_probs=45.7
Q ss_pred CChhhHHHHHHHHHhhc----ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChh
Q psy13975 130 IGAHDYQAGRCCKLLTF----ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEE 205 (415)
Q Consensus 130 lSgGekQRl~LArAl~~----~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e 205 (415)
+|+|||||++||+++.. .+..+++||| +.+++.+
T Consensus 220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp------------------------------------------~~~LD~~ 257 (322)
T 1e69_A 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEV------------------------------------------DSPLDDY 257 (322)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESC------------------------------------------CSSCCHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCEEEEeCC------------------------------------------CCCCCHH
Confidence 59999999999999962 3344455554 4577778
Q ss_pred hHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 206 HFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 206 ~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
..+.+.+.++.++ .|.++|++||..
T Consensus 258 ~~~~l~~~l~~~~--~~~~vi~~tH~~ 282 (322)
T 1e69_A 258 NAERFKRLLKENS--KHTQFIVITHNK 282 (322)
T ss_dssp HHHHHHHHHHHHT--TTSEEEEECCCT
T ss_pred HHHHHHHHHHHhc--CCCeEEEEECCH
Confidence 8889999999874 488999999763
No 203
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.01 E-value=1.3e-09 Score=104.20 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=45.9
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+... +++.. . ++.++..+|+.++++|++++.+++.+++.+...+..
T Consensus 112 ~~p~ivv~NK~Dl~~~----~~~~~-~-------~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 112 GIPCIVALNMLDIAEK----QNIRI-E-------IDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp TCCEEEEEECHHHHHH----TTEEE-C-------HHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred CCCEEEEEECccchhh----hhHHH-H-------HHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 8999999999999753 22221 1 356777889999999999999999999999766544
No 204
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.00 E-value=3.6e-10 Score=111.09 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=41.6
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
++++++|.+.+| ++++|+|+||||||||+++|.|+++|+.|.+.
T Consensus 160 ~l~~l~~~i~~g---~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~ 203 (330)
T 2pt7_A 160 AISAIKDGIAIG---KNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS 203 (330)
T ss_dssp HHHHHHHHHHHT---CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEE
T ss_pred HHhhhhhhccCC---CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEE
Confidence 688999999999 99999999999999999999999999999865
No 205
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.99 E-value=2.2e-09 Score=108.22 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=42.5
Q ss_pred CcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh---CCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 181 VDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF---GAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 181 vpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~---Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.|+++|+||+|+... ++.....+.++.++..+ ++.++++|++++.|++.|+++|...+.
T Consensus 130 ~~iivviNK~Dl~~~---------~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 130 KNLIIVQNKVDVVSK---------EEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp CCEEEEEECGGGSCH---------HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCEEEEEECccccch---------HHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 389999999999642 22223333445554433 567999999999999999999976553
No 206
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.99 E-value=2.6e-11 Score=120.44 Aligned_cols=48 Identities=27% Similarity=0.254 Sum_probs=41.5
Q ss_pred eeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeec
Q psy13975 7 DVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINV 58 (415)
Q Consensus 7 ~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v 58 (415)
..++|++.+| ++++|+|+||||||||++.|+|++.|+.|.++ +...+.
T Consensus 148 ~~l~l~~~~g---~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~-l~g~D~ 195 (359)
T 2og2_A 148 TELQLGFRKP---AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-MAAGDT 195 (359)
T ss_dssp CSCCCCSSSS---EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EECCCC
T ss_pred CCcceecCCC---eEEEEEcCCCChHHHHHHHHHhhccccCCEEE-Eecccc
Confidence 4688999999 99999999999999999999999988889876 444443
No 207
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.99 E-value=2.5e-09 Score=106.08 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=44.4
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
+.|+++|+||+|+... ... ..++.++...+..++++|++++.+++.+++.|...+..
T Consensus 280 ~~piilV~NK~Dl~~~---------~~~----~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 280 DLPFLVVINKIDVADE---------ENI----KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TSCEEEEECCTTTCCH---------HHH----HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCh---------HHH----HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 7899999999999642 111 12344556778899999999999999999999877643
No 208
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.96 E-value=1.1e-09 Score=106.20 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=45.3
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
+.|+++|+||+|+... .+.+.+.+..++..+|. .++.+|++++.+++.+++.+...+.
T Consensus 116 ~~P~ilvlNK~D~~~~-----------~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 116 KAPVILAVNKVDNVQE-----------KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp SSCEEEEEESTTTCCC-----------HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred CCCEEEEEECcccCcc-----------HHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 7899999999998531 12344556777777786 6899999999999999999976554
No 209
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.96 E-value=1.1e-10 Score=116.19 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=36.0
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+... .+...+.+.++.++.++|+.++++|++++.+ +..+..+...+..
T Consensus 174 ~~piIlV~NK~Dl~~~---------~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 174 KVNIVPVIAKADTLTL---------KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp -SCEEEEEECCSSSCH---------HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCH---------HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 7899999999999642 2233333457788888899999999999998 6667766666654
No 210
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.95 E-value=2.1e-09 Score=107.01 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=43.0
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh---CCeEEEeccCCcccHHHHHHHHHHHHhCCC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF---GAGLFYTSAKEDKNCDLLYKYLAHRLYGFP 251 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~---Gasli~tS~k~~~n~~~l~~~l~h~l~~~~ 251 (415)
+.|+++|+||+|+... + . ......+..++..+ +..++.+|++++.+++.+++.|...+...+
T Consensus 292 ~~p~ilV~NK~Dl~~~-----~--~---~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 292 GKPILVTLNKIDKING-----D--L---YKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp SCCEEEEEECGGGCCS-----C--H---HHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCc-----h--H---HHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 6899999999998631 1 1 11112233344444 236899999999999999999988776543
No 211
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=5.1e-10 Score=113.22 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=32.6
Q ss_pred eeeEeEEEcCCCcccE--EEEEcCCCCcHHHHHHHHhCCC
Q psy13975 6 YDVFVLRFNDGSVIGN--ILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~--v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
|+++||+|.+| ++ ++|+|+|||||||||++|+|+.
T Consensus 30 L~~vsl~i~~G---ei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQG---FCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-C---CEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCC---CeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 89999999999 99 9999999999999999999984
No 212
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.92 E-value=4.6e-09 Score=107.04 Aligned_cols=63 Identities=22% Similarity=0.189 Sum_probs=44.3
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHH-HHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYI-RKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~L-R~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
|.|+++|+||+|+.+.. .. ..+.+.+.+ +.++...++.++++||+++.+++.+++.+...+-.
T Consensus 292 ~~~~ilv~NK~Dl~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 292 GRASVVVFNKWDLVVHR----EK---RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TCEEEEEEECGGGSTTG----GG---CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECccCCCch----hh---HHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 89999999999997421 11 122222222 34444457889999999999999999999765543
No 213
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.92 E-value=1.4e-09 Score=111.91 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=82.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhh-h--ccCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLR-F--ALNQET 92 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~-~--~l~~~~ 92 (415)
-+|+|+|..|+|||||+++|.+.. .+..|...++....+. -....+.+|+++|...+..+.. + ......
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~----~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFI----HDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEE----ETTEEEEEEC--------------------CC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE----ECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 579999999999999999998753 2223332222111111 1124688999998765544321 1 112335
Q ss_pred CCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCC
Q psy13975 93 LPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPG 171 (415)
Q Consensus 93 ~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~ 171 (415)
+.... +++++|.+++.+. +.+..| .+.+..+ .
T Consensus 310 ~~~aD~vl~VvD~s~~~s~-~~~~~~----~~~l~~l----------------------------------------~-- 342 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLD-DELTEI----RELKAAH----------------------------------------P-- 342 (476)
T ss_dssp CSSCSEEEEEEETTTCSSG-GGHHHH----HHHHHHC----------------------------------------T--
T ss_pred cccCCEEEEEEECCCCcch-hhhHHH----HHHHHhc----------------------------------------C--
Confidence 55555 4677888776541 112121 1222222 0
Q ss_pred ccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 172 EGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 172 e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+....+ .+ .+.++......++++|++++.+++.+++.|...+.
T Consensus 343 --------~~piIvV~NK~Dl~~~~~---------~~-----~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 343 --------AAKFLTVANKLDRAANAD---------AL-----IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp --------TSEEEEEEECTTSCTTTH---------HH-----HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred --------CCCEEEEEECcCCCCccc---------hh-----HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 679999999999964211 11 02233322367999999999999999999988776
No 214
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.91 E-value=1.3e-09 Score=105.71 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=89.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhc---cCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFA---LNQET 92 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~---l~~~~ 92 (415)
.+++|+|.+|+|||||+++|.|... +..+... .... .........+.+|+++|.......+.-. ....+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr--~~i~--~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR--KRLR--GILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC--SCEE--EEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee--EEEE--EEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4799999999999999999997421 1122100 0000 0001224578899999865422211100 01223
Q ss_pred CCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCC
Q psy13975 93 LPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPG 171 (415)
Q Consensus 93 ~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~ 171 (415)
+.+.. +++++|.+++.+.. ..| +.+.+... .
T Consensus 84 l~~ad~il~VvD~~~~~~~~---~~~---i~~~l~~~------------------------------------------~ 115 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE---DEL---VARALKPL------------------------------------------V 115 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH---HHH---HHHHHGGG------------------------------------------T
T ss_pred HhcCCEEEEEEECCCCCChH---HHH---HHHHHHhh------------------------------------------c
Confidence 44444 35667766543311 122 11111110 0
Q ss_pred ccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 172 EGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 172 e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
-++|+++|+||+|+.... + + +...++.+ ...+.++.+|++++.+++.+++.+...+..
T Consensus 116 -------~~~p~ilV~NK~Dl~~~~--------~--~-~~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 116 -------GKVPILLVGNKLDAAKYP--------E--E-AMKAYHEL--LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp -------TTSCEEEEEECGGGCSSH--------H--H-HHHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred -------CCCCEEEEEECcccCCch--------H--H-HHHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 178999999999996320 1 0 23334444 123578999999999999999999876543
No 215
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.91 E-value=2.1e-09 Score=98.09 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
+.+++.| .+|.+| ++++|+|+||||||||+++|+|+.+
T Consensus 8 ~~~~~~~--~~i~~G---ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 8 TKPTARG--QPAAVG---RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -------------CC---CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCcCCCC--CCCCCC---CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3567888 799999 9999999999999999999999875
No 216
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.88 E-value=2.5e-11 Score=117.97 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=39.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
++|+++||+|++| ++++|+|+||||||||+++|.|++ .|.++
T Consensus 114 ~vL~~vsl~i~~G---e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~ 155 (305)
T 2v9p_A 114 NALKLWLKGIPKK---NCLAFIGPPNTGKSMLCNSLIHFL---GGSVL 155 (305)
T ss_dssp HHHHHHHHTCTTC---SEEEEECSSSSSHHHHHHHHHHHH---TCEEE
T ss_pred hhhccceEEecCC---CEEEEECCCCCcHHHHHHHHhhhc---CceEE
Confidence 4789999999999 999999999999999999999998 78875
No 217
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.87 E-value=1e-09 Score=108.38 Aligned_cols=168 Identities=19% Similarity=0.142 Sum_probs=97.2
Q ss_pred eeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeecCCCCccccceEEEEEecCccc--
Q psy13975 7 DVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA-- 79 (415)
Q Consensus 7 ~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~-- 79 (415)
..+.+++.-- -.|+|+|..+||||||+++|++... |..+....+....+ +....+.+|+++|...
T Consensus 149 ~~~~leLk~l---a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~-----~~~~~~~l~DtPG~i~~a 220 (342)
T 1lnz_A 149 RYIVLELKVL---ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET-----DDGRSFVMADLPGLIEGA 220 (342)
T ss_dssp EEEEEEEECC---CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC-----SSSCEEEEEEHHHHHHHT
T ss_pred hhHhhhhhhc---CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEe-----CCCceEEEecCCCCcccc
Confidence 3455566555 6799999999999999999985421 10110000011111 1124678899887422
Q ss_pred --chhhhhhccCCCCCCchh-hHHHHhcCC---chhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccc
Q psy13975 80 --HSNLLRFALNQETLPHTM-VMLVVSMTT---PWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHL 153 (415)
Q Consensus 80 --~~~Ll~~~l~~~~~~~~~-v~~~~d~~~---p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~l 153 (415)
+..+....+. .+..+. +++++|.+. ... ++.+..|...+..+...+
T Consensus 221 ~~~~~l~~~fl~--~i~~~d~ll~VvD~s~~~~~~~-~~~~~~~~~eL~~~~~~l------------------------- 272 (342)
T 1lnz_A 221 HQGVGLGHQFLR--HIERTRVIVHVIDMSGLEGRDP-YDDYLTINQELSEYNLRL------------------------- 272 (342)
T ss_dssp TCTTTTHHHHHH--HHHHCCEEEEEEESSCSSCCCH-HHHHHHHHHHHHHSCSST-------------------------
T ss_pred cccchhHHHHHH--HHHhccEEEEEEECCcccccCh-HHHHHHHHHHHHHhhhhh-------------------------
Confidence 2222100000 011122 356677765 333 555555544433321100
Q ss_pred hhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC--CeEEEeccC
Q psy13975 154 IELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG--AGLFYTSAK 231 (415)
Q Consensus 154 de~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G--asli~tS~k 231 (415)
..+|+++|+||+|+... .+ .+..++..++ ..++.+|++
T Consensus 273 -------------------------~~~p~ilV~NK~Dl~~~--------~e-------~~~~l~~~l~~~~~v~~iSA~ 312 (342)
T 1lnz_A 273 -------------------------TERPQIIVANKMDMPEA--------AE-------NLEAFKEKLTDDYPVFPISAV 312 (342)
T ss_dssp -------------------------TTSCBCBEEECTTSTTH--------HH-------HHHHHHHHCCSCCCBCCCSSC
T ss_pred -------------------------cCCCEEEEEECccCCCC--------HH-------HHHHHHHHhhcCCCEEEEECC
Confidence 16899999999999642 01 1344555555 578999999
Q ss_pred CcccHHHHHHHHHHHHhCC
Q psy13975 232 EDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 232 ~~~n~~~l~~~l~h~l~~~ 250 (415)
++.+++.|++.|...+...
T Consensus 313 tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENT 331 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSC
T ss_pred CCcCHHHHHHHHHHHHhhC
Confidence 9999999999998887654
No 218
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.86 E-value=6.1e-09 Score=96.94 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=38.2
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCc-----ccHHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKED-----KNCDLLYKYLAHRL 247 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~-----~n~~~l~~~l~h~l 247 (415)
..|++||+||+|+... ..+. +......+.++.++.++|..+++++.+.. .++..|+..+...+
T Consensus 145 ~~~~iiv~nK~D~~~~----~~~~-~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 145 RSFMILIFTRKDDLGD----TNLH-DYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp GGGEEEEEECGGGC-----------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCccCCc----ccHH-HHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 4589999999998642 1111 11111123477888888988777766533 57888888775554
No 219
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.85 E-value=1.4e-09 Score=104.60 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=41.7
Q ss_pred CCCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCc-EEE
Q psy13975 2 TNPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG-LAL 51 (415)
Q Consensus 2 ~~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G-~il 51 (415)
+.++|+++++.|.+| +.++|+|+||||||||++.|+|...+..| .++
T Consensus 21 g~~~Ld~i~~~l~~G---~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 21 GCTGINDKTLGARGG---EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp SCTTHHHHHCSBCTT---CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CHHHHHHHhcCCCCC---eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 356899999999999 99999999999999999999998877767 443
No 220
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.85 E-value=2.1e-09 Score=109.55 Aligned_cols=155 Identities=19% Similarity=0.272 Sum_probs=96.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC---CCCC-------------------------------CCcEEEEeceeecCCCCccc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG---IDSP-------------------------------EKGLALEYAYINVSDEYRED 65 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G---l~~p-------------------------------~~G~il~~~~~~v~~~~~~~ 65 (415)
-+++|+|..|+|||||+++|.+ .... ..|..+...+..+ ...
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~----~~~ 82 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF----ETK 82 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE----ECS
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE----ecC
Confidence 5899999999999999999963 2210 1122221111111 112
Q ss_pred cceEEEEEecCcccchhhhhhccCCCCCCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHh
Q psy13975 66 HTRLGVWILDGEPAHSNLLRFALNQETLPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLL 144 (415)
Q Consensus 66 ~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl 144 (415)
..++.+|+++|+..|.... ...+..+. +++++|..+ . .++.+..|....++++..+ +
T Consensus 83 ~~~~~iiDtpG~~~f~~~~-----~~~~~~aD~~ilVvDa~~-g-sfe~~~~~~~qt~~~~~~~-------------~-- 140 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNM-----ITGASQADAAILVVSAKK-G-EYEAGMSVEGQTREHIILA-------------K-- 140 (435)
T ss_dssp SCEEEECCCSSSTTHHHHH-----HHTSSCCSEEEEEEECST-T-HHHHHHSTTCHHHHHHHHH-------------H--
T ss_pred CeEEEEEECCCcHHHHHHH-----HhhhhhcCEEEEEEECCC-C-ccccccccchHHHHHHHHH-------------H--
Confidence 3578999999988775442 11233444 456777766 2 2555545544444444221 1
Q ss_pred hcccccccchhhhhhccccCccccCCCccccccccCC-cEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-
Q psy13975 145 TFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGV-DIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG- 222 (415)
Q Consensus 145 ~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgv-piivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G- 222 (415)
.+++ +++||+||+|+.. ..++++.++.+.+.++.++.++|
T Consensus 141 ---------------------------------~~~~~~iivviNK~Dl~~-----~~~~~~~~~~~~~~i~~~~~~~~~ 182 (435)
T 1jny_A 141 ---------------------------------TMGLDQLIVAVNKMDLTE-----PPYDEKRYKEIVDQVSKFMRSYGF 182 (435)
T ss_dssp ---------------------------------HTTCTTCEEEEECGGGSS-----STTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------------------HcCCCeEEEEEEcccCCC-----ccccHHHHHHHHHHHHHHHHHcCC
Confidence 1265 5899999999963 23555667778888899988887
Q ss_pred ----CeEEEeccCCcccHHH
Q psy13975 223 ----AGLFYTSAKEDKNCDL 238 (415)
Q Consensus 223 ----asli~tS~k~~~n~~~ 238 (415)
+.++.+|++++.|++.
T Consensus 183 ~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 183 NTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp CCTTCEEEECBTTTTBTTTB
T ss_pred CcCCceEEEeecccCccccc
Confidence 6799999999999863
No 221
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.85 E-value=9.2e-10 Score=112.76 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=44.9
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH-hCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK-FGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~-~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
+.|+++|+||+|+... . +...+.+.+.++..... .++.+++|||+++.+++.+++.+...+..
T Consensus 306 ~~~~ilv~NK~Dl~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 306 GKAVVIVVNKWDAVDK----D---ESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TCEEEEEEECGGGSCC----C---SSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred CCCEEEEEEChhcCCC----c---hHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 8999999999999742 1 12233344444443222 25789999999999999999999876644
No 222
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.85 E-value=3e-09 Score=109.72 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=48.4
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh----CCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF----GAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~----Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|++||+||+|+.. ++.++.+.+.++.++..+ +..++.+|++++.|++.|+++|...+.
T Consensus 125 ~ip~IvviNK~Dl~~---------~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 125 NIPIIVVITKSDNAG---------TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCCBCEEEECTTSSC---------HHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCccc---------chhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 889999999999963 234555666677777666 578999999999999999999987653
No 223
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.84 E-value=2.1e-09 Score=118.28 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=33.8
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~G 41 (415)
+.|++|++|++.+| ++++|+|||||||||||+++.+
T Consensus 660 ~~V~ndvsl~~~~g---~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 660 QYVPNNTDLSEDSE---RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSCCEEEEECTTSC---CEEEEESCCCHHHHHHHHHHHH
T ss_pred ceecccccccCCCC---eEEEEECCCCCchHHHHHHHHH
Confidence 57899999999999 9999999999999999999864
No 224
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.84 E-value=6.9e-10 Score=113.03 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=45.1
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHH-HHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQ-YIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q-~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+.... . ...+.+.+ ..+.++...++.++++|++++.+++.+++.+...+..
T Consensus 286 ~~~iiiv~NK~Dl~~~~----~---~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 286 GKAVVIVVNKWDAVDKD----E---STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TCEEEEEEECGGGSCCC----T---THHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred CCcEEEEEECccCCCcc----h---HHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 89999999999997421 1 11122222 2234444467899999999999999999999877654
No 225
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.83 E-value=4.6e-11 Score=124.60 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=42.5
Q ss_pred CCCCeeeEeE-EEcCCCcccEEEEEcCCCCcHHHHHHH--HhCCCCCCCcEEE
Q psy13975 2 TNPYYDVFVL-RFNDGSVIGNILLISDNSSGKTTLIAK--LQGIDSPEKGLAL 51 (415)
Q Consensus 2 ~~~iL~~vs~-~i~~G~~~e~v~IlG~nGsGKSTLl~~--l~Gl~~p~~G~il 51 (415)
+.++|++++| .|++| ++++|+|+||||||||+++ +.|+.+|..|.++
T Consensus 24 g~~~Ld~i~~G~i~~G---e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~ 73 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIG---RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 73 (525)
T ss_dssp CCTTHHHHTTSSEETT---SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CchhHHHhcCCCCCCC---eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 4578999999 99999 9999999999999999999 6799888888755
No 226
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.81 E-value=3.9e-09 Score=116.43 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=32.4
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHH
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKL 39 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l 39 (415)
+.|++|++|++.+| ++++|+|||||||||||+.+
T Consensus 649 ~~v~ndisl~~~~g---~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 649 AFIPNDVYFEKDKQ---MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCEEEEEETTTB---CEEEEECCTTSSHHHHHHHH
T ss_pred eeecccceeecCCC---eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999 99999999999999999999
No 227
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.80 E-value=1.5e-09 Score=106.90 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=44.0
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeec
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINV 58 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v 58 (415)
.+|++++|++.+| ++++|+|+||||||||+++|.|+..|+.|.+. +...+.
T Consensus 43 ~~l~~i~~~~~~g---~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~-i~~~d~ 93 (337)
T 2qm8_A 43 DLIDAVLPQTGRA---IRVGITGVPGVGKSTTIDALGSLLTAAGHKVA-VLAVDP 93 (337)
T ss_dssp HHHHHHGGGCCCS---EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EEEECG
T ss_pred HHHHhCCcccCCC---eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEE-EEEEcC
Confidence 4688999999999 99999999999999999999999888888865 334443
No 228
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.80 E-value=7.1e-09 Score=104.29 Aligned_cols=61 Identities=26% Similarity=0.355 Sum_probs=46.4
Q ss_pred CCc-EEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-----CeEEEeccCCccc----------HHHHHHHH
Q psy13975 180 GVD-IVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-----AGLFYTSAKEDKN----------CDLLYKYL 243 (415)
Q Consensus 180 gvp-iivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-----asli~tS~k~~~n----------~~~l~~~l 243 (415)
++| ++||+||+|+.. +++.++.+...++.++.++| +.++++|++++.| ++.|+++|
T Consensus 118 ~vp~iivviNK~Dl~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l 189 (397)
T 1d2e_A 118 GVEHVVVYVNKADAVQ--------DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAV 189 (397)
T ss_dssp TCCCEEEEEECGGGCS--------CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHH
T ss_pred CCCeEEEEEECcccCC--------CHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHH
Confidence 788 789999999963 12344556666788888777 4799999999775 88899988
Q ss_pred HHHHh
Q psy13975 244 AHRLY 248 (415)
Q Consensus 244 ~h~l~ 248 (415)
.+.+-
T Consensus 190 ~~~~p 194 (397)
T 1d2e_A 190 DTYIP 194 (397)
T ss_dssp HHHSC
T ss_pred HHhCC
Confidence 76543
No 229
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.79 E-value=2.9e-08 Score=97.67 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=27.2
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~ 40 (415)
-+.+..+.+.+| ..+|+|+||||||||+..|.
T Consensus 13 ~~~~~~i~f~~~----~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 13 SHSDTVVEFKEG----INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp TEEEEEEECCSE----EEEEECCTTSSHHHHHHHHH
T ss_pred CccCeEEcCCCC----eEEEECCCCCCHHHHHHHHH
Confidence 356777888777 88999999999999999874
No 230
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.79 E-value=1.8e-08 Score=102.78 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=45.0
Q ss_pred CCc-EEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC------eEEEeccCCcccHHHHHH
Q psy13975 180 GVD-IVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA------GLFYTSAKEDKNCDLLYK 241 (415)
Q Consensus 180 gvp-iivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga------sli~tS~k~~~n~~~l~~ 241 (415)
|+| ++||+||+|+.. .+|+++.++.+.+.++.++.++|. .++.+|++++.|++.+..
T Consensus 154 ~v~~iIvviNK~Dl~~-----~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 154 GVKHLIVLINKMDDPT-----VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCeEEEEeecCCCcc-----cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 788 999999999853 245566677777778888777764 599999999999998544
No 231
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.79 E-value=1.1e-09 Score=111.75 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=41.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
..+|+++ |+|.+| ++++|+|+||||||||+++|+|+.+|+.|.+.
T Consensus 145 ~~vld~v-l~i~~G---q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~ 189 (438)
T 2dpy_A 145 VRAINAL-LTVGRG---QRMGLFAGSGVGKSVLLGMMARYTRADVIVVG 189 (438)
T ss_dssp CHHHHHH-SCCBTT---CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred ceEEeee-EEecCC---CEEEEECCCCCCHHHHHHHHhcccCCCeEEEE
Confidence 3579999 999999 99999999999999999999999999988755
No 232
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.77 E-value=6e-10 Score=98.00 Aligned_cols=44 Identities=20% Similarity=0.043 Sum_probs=40.5
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
.+++++||+|.+| ++++|+|+||||||||++.|+|+. |+.|.+.
T Consensus 21 ~~l~~vsl~i~~G---e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 21 FAEILLKLHTEKA---IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp HHHHHHHHCCSSC---EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred HHHhccccccCCC---CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 3678999999999 999999999999999999999998 8889854
No 233
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.76 E-value=7.5e-09 Score=92.22 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch-hh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT-MV 98 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~-~v 98 (415)
-+++|+|+.|||||||+++|.+...+..... +.. ...... ....+.+|+++|...+.......+.. .+... .+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~--~~~-~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~-~~~~~~~~ 122 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS--QEP-LSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKT-RAKFVKGL 122 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC---------------CC--CCTTCSEEEETTCCBSSCCHHHHHHH-HGGGEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccc--CCC-ceeeee--cCCeEEEEECCCCchHHHHHHHHHHh-hcccCCEE
Confidence 5899999999999999999986532211000 000 000000 23567899999977654432111100 01112 24
Q ss_pred HHHHhcC-CchhHHHHHHhH
Q psy13975 99 MLVVSMT-TPWNIIDELHNW 117 (415)
Q Consensus 99 ~~~~d~~-~p~~~l~~l~~w 117 (415)
++++|.+ .+.+ +..+..|
T Consensus 123 i~v~d~~~~~~~-~~~~~~~ 141 (193)
T 2ged_A 123 IFMVDSTVDPKK-LTTTAEF 141 (193)
T ss_dssp EEEEETTCCHHH-HHHHHHH
T ss_pred EEEEECCCCchh-HHHHHHH
Confidence 6677877 5544 4444444
No 234
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.75 E-value=1e-08 Score=104.43 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=40.5
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+.... +++ ....++ +.|. .++.+||+++.+++.|++.+...+.
T Consensus 110 ~~p~ilv~NK~D~~~~~-------~~~------~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 110 TVDTILVANKAENLREF-------ERE------VKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp TCCEEEEEESCCSHHHH-------HHH------THHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcccc-------HHH------HHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 78999999999985310 001 013343 4676 6899999999999999999987765
No 235
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.74 E-value=2.1e-09 Score=106.37 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=41.2
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
..+|+++ |+|.+| ++++|+|+||||||||+++|+|+..|+.|.+.
T Consensus 59 ~~ald~l-l~i~~G---q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~ 103 (347)
T 2obl_A 59 VRAIDGL-LTCGIG---QRIGIFAGSGVGKSTLLGMICNGASADIIVLA 103 (347)
T ss_dssp CHHHHHH-SCEETT---CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred CEEEEee-eeecCC---CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 3578999 999999 99999999999999999999999999888644
No 236
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.73 E-value=7.1e-09 Score=111.05 Aligned_cols=31 Identities=26% Similarity=0.098 Sum_probs=25.3
Q ss_pred eEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 10 VLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 10 s~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
++.+.++ ++++|+|++|+|||||+++|.+..
T Consensus 3 s~~~~~~---~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 3 TEGGAMI---RTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp ---CCCE---EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCC---cEEEEECCCCChHHHHHHHHHHhc
Confidence 4567788 999999999999999999998543
No 237
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.73 E-value=5.7e-09 Score=99.49 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=35.7
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~ 246 (415)
++|+++|+||+|+.. .++...+.+.++..+..+|+.++.+|++++.+++.+++.|...
T Consensus 144 ~~pvi~V~nK~D~~~---------~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 144 KVNIIPLIAKADTLT---------PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp TSCEEEEESSGGGSC---------HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred cCCEEEEEeccCCCC---------HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 789999999999863 2334444455677777889999989999999999999988654
No 238
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.73 E-value=5.3e-11 Score=116.19 Aligned_cols=33 Identities=18% Similarity=-0.066 Sum_probs=30.2
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G 48 (415)
+.+| ++++|+|+||||||||+++|+|++.|..|
T Consensus 87 ~~~g---~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVP---FIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCC---EEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCC---EEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 7788 99999999999999999999999888655
No 239
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.70 E-value=1.7e-09 Score=112.70 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC---CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID---SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~---~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
-+|+|+|+.|+|||||+++|.+.. ....|....+....+. .....++.+|+++|+..|..+ ....+..+
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~---~~~g~~i~~iDTPGhe~f~~~-----~~~~~~~a 76 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVS---LPSGEKITFLDTPGHAAFSAM-----RARGTQVT 76 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBC---SSCSSCCBCEECSSSCCTTTS-----BBSSSBSB
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEE---eCCCCEEEEEECCChHHHHHH-----HHHHHccC
Confidence 689999999999999999997421 1112221112221111 112246789999998877666 33344444
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|...... ..|.+.+. ++..
T Consensus 77 D~vILVVDa~dg~~-----~qt~e~l~-~~~~------------------------------------------------ 102 (537)
T 3izy_P 77 DIVILVVAADDGVM-----KQTVESIQ-HAKD------------------------------------------------ 102 (537)
T ss_dssp SSCEEECBSSSCCC-----HHHHHHHH-HHHT------------------------------------------------
T ss_pred CEEEEEEECCCCcc-----HHHHHHHH-HHHH------------------------------------------------
Confidence 4 356677665322 11111111 1111
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC--CeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG--AGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G--asli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.++|++||+||+|+.... .+ .+.. + +.+ ...++..+| ..++++|++++.+++.|++.+...+-
T Consensus 103 ---~~vPiIVViNKiDl~~~~-~~-~v~~-~---l~~-~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 103 ---AHVPIVLAINKCDKAEAD-PE-KVKK-E---LLA-YDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp ---TTCCEEECCBSGGGTTTS-CC-SSSS-H---HHH-TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred ---cCCcEEEEEecccccccc-hH-HHHH-H---HHh-hhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 188999999999996421 11 1111 1 100 111223333 47899999999999999999987654
No 240
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.68 E-value=3.8e-09 Score=117.78 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=34.7
Q ss_pred CCCeeeEeEEEcC-------CCcccEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 3 NPYYDVFVLRFND-------GSVIGNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 3 ~~iL~~vs~~i~~-------G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
..|++|++|++.+ | ++++|+|||||||||||+.+ |+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g---~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKA---YCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CC---CEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEeeeeeeccccccccCCCC---cEEEEECCCCCChHHHHHHH-HHHH
Confidence 4689999999987 8 99999999999999999999 8764
No 241
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.68 E-value=4.6e-08 Score=98.64 Aligned_cols=58 Identities=26% Similarity=0.360 Sum_probs=35.0
Q ss_pred cEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH---hCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 182 DIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK---FGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 182 piivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~---~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
|++||+||+|+.... ...+..+. ++.++.. .+..++++|++++.|++.|+++|...+.
T Consensus 137 ~iivv~NK~Dl~~~~-----~~~~~~~~----i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 137 KIIIVQNKIDLVDEK-----QAEENYEQ----IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CEEEEEECTTSSCTT-----TTTTHHHH----HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred eEEEEEEccCCCCHH-----HHHHHHHH----HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 799999999996421 11122333 3444433 3678999999999999999999987554
No 242
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.67 E-value=1.9e-08 Score=101.42 Aligned_cols=60 Identities=23% Similarity=0.275 Sum_probs=45.7
Q ss_pred CCc-EEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-----CeEEEeccCCccc------------------
Q psy13975 180 GVD-IVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-----AGLFYTSAKEDKN------------------ 235 (415)
Q Consensus 180 gvp-iivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-----asli~tS~k~~~n------------------ 235 (415)
++| +++|+||+|+.. +++.++.+.+.++.++.++| ..++++|++++.+
T Consensus 127 ~ip~iivviNK~Dl~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~ 198 (405)
T 2c78_A 127 GVPYIVVFMNKVDMVD--------DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK 198 (405)
T ss_dssp TCCCEEEEEECGGGCC--------CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHH
T ss_pred CCCEEEEEEECccccC--------cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCccccc
Confidence 788 899999999963 12334556666778887777 5799999999987
Q ss_pred HHHHHHHHHHHH
Q psy13975 236 CDLLYKYLAHRL 247 (415)
Q Consensus 236 ~~~l~~~l~h~l 247 (415)
++.|++.+...+
T Consensus 199 i~~Ll~~l~~~l 210 (405)
T 2c78_A 199 IWELLDAIDEYI 210 (405)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhhc
Confidence 778888876544
No 243
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.67 E-value=1.4e-08 Score=104.76 Aligned_cols=52 Identities=12% Similarity=0.341 Sum_probs=39.5
Q ss_pred CC-cEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-----CeEEEeccCCcccHHH
Q psy13975 180 GV-DIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-----AGLFYTSAKEDKNCDL 238 (415)
Q Consensus 180 gv-piivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-----asli~tS~k~~~n~~~ 238 (415)
++ |++||+||+|+.. ++++.++.+.+.++.++.++| +.++.+|++++.|++.
T Consensus 170 ~~~~iIvviNK~Dl~~-------~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 170 GIHNLIIAMNKMDNVD-------WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TCCCEEEEEECGGGGT-------TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CCCcEEEEEECcCccc-------chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 54 5999999999863 344566667777777776665 4689999999999873
No 244
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.65 E-value=1e-08 Score=105.39 Aligned_cols=55 Identities=25% Similarity=0.340 Sum_probs=43.5
Q ss_pred CCc-EEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh-C------CeEEEeccCCcccHHHH
Q psy13975 180 GVD-IVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF-G------AGLFYTSAKEDKNCDLL 239 (415)
Q Consensus 180 gvp-iivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~-G------asli~tS~k~~~n~~~l 239 (415)
|+| ++||+||+|+.. .+|+++.++.+...++.++.++ | +.++.+|++++.|++.+
T Consensus 180 ~vp~iivviNK~Dl~~-----~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 180 GINHLVVVINKMDEPS-----VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp TCSSEEEEEECTTSTT-----CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred CCCEEEEEEECccCCC-----ccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 888 999999999853 2455667777777788888777 4 55999999999998754
No 245
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.65 E-value=1.8e-08 Score=106.52 Aligned_cols=60 Identities=30% Similarity=0.380 Sum_probs=46.8
Q ss_pred CCc-EEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHH-HHhCC-----eEEEeccCCcccHH--------------H
Q psy13975 180 GVD-IVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFC-LKFGA-----GLFYTSAKEDKNCD--------------L 238 (415)
Q Consensus 180 gvp-iivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~-~~~Ga-----sli~tS~k~~~n~~--------------~ 238 (415)
|+| ++||+||+|+.. ++++.++.+.+.++.++ ..+|. .++++|++++.|++ .
T Consensus 314 gip~iIvviNKiDl~~-------~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~ 386 (592)
T 3mca_A 314 GISEIVVSVNKLDLMS-------WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPT 386 (592)
T ss_dssp SCCCEEEEEECGGGGT-------TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCC
T ss_pred CCCeEEEEEecccccc-------ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHH
Confidence 776 999999999863 44566777777788887 66665 69999999999997 6
Q ss_pred HHHHHHHH
Q psy13975 239 LYKYLAHR 246 (415)
Q Consensus 239 l~~~l~h~ 246 (415)
|++.|...
T Consensus 387 Lle~l~~~ 394 (592)
T 3mca_A 387 LLSALDQL 394 (592)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHhh
Confidence 77777543
No 246
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.65 E-value=5.8e-09 Score=106.19 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=37.8
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
+.|+++|+||+|+.... ... ..++ +.|. .++.+|++++.+++.|++.+...+.
T Consensus 111 ~~pvilv~NK~D~~~~~---~~~------------~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 111 KKPVVLAVNKLDNTEMR---ANI------------YDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp CSCEEEEEECCCC--------CC------------CSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred CCCEEEEEECccCccch---hhH------------HHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 78999999999986421 111 1121 3465 6899999999999999999987764
No 247
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.65 E-value=1.9e-08 Score=102.28 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=41.5
Q ss_pred CC-cEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-----CeEEEeccCCcccHHH
Q psy13975 180 GV-DIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-----AGLFYTSAKEDKNCDL 238 (415)
Q Consensus 180 gv-piivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-----asli~tS~k~~~n~~~ 238 (415)
++ |++||+||+|+.. ++++.++.+.+.++.++.++| +.++++|++++.|++.
T Consensus 156 ~~~~iIvviNK~Dl~~-------~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 156 GIKHIVVAINKMDLNG-------FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TCCEEEEEEECTTTTT-------SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred CCCeEEEEEEcCcCCc-------ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 56 5899999999963 234456667777888888888 6799999999999886
No 248
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.65 E-value=7e-08 Score=97.37 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=41.6
Q ss_pred CcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHH---hCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 181 VDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLK---FGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 181 vpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~---~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.|+++|+||+|+... +......+.++.++.. .+..++++|++++.+++.|+++|...+.
T Consensus 138 ~~iivviNK~Dl~~~---------~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 138 KNIIIAQNKIELVDK---------EKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp CCEEEEEECGGGSCH---------HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CcEEEEEECccCCCH---------HHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 378999999999642 1111222334455443 3678999999999999999999976554
No 249
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.62 E-value=3.2e-08 Score=98.69 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=86.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCchh-hH
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHTM-VM 99 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~-v~ 99 (415)
+++++|..++|||||+++|. ..|...+..+.... ....++.+|+++|+..|...... .+..+. ++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~----~~~~~i~iiDtPGh~~f~~~~~~-----~~~~aD~ai 88 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNND----KEGRNMVFVDAHSYPKTLKSLIT-----ALNISDIAV 88 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEEC----SSSSEEEEEECTTTTTCHHHHHH-----HHHTCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEe----cCCeEEEEEECCChHHHHHHHHH-----HHHHCCEEE
Confidence 89999999999999999987 22221111111111 12346899999998766322111 112222 34
Q ss_pred HHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccccccc
Q psy13975 100 LVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNL 179 (415)
Q Consensus 100 ~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nl 179 (415)
+++| ...+ +.+...|.. .+.. +
T Consensus 89 lVvd-~~g~--~~qt~e~~~----~~~~---------------------------------------------------~ 110 (370)
T 2elf_A 89 LCIP-PQGL--DAHTGECII----ALDL---------------------------------------------------L 110 (370)
T ss_dssp EEEC-TTCC--CHHHHHHHH----HHHH---------------------------------------------------T
T ss_pred EEEc-CCCC--cHHHHHHHH----HHHH---------------------------------------------------c
Confidence 5566 4322 222222211 1111 1
Q ss_pred CCcE-EEEEe-CcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC---CeEEE--eccCC---cccHHHHHHHHHHHH
Q psy13975 180 GVDI-VVVVT-KTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG---AGLFY--TSAKE---DKNCDLLYKYLAHRL 247 (415)
Q Consensus 180 gvpi-ivV~~-K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G---asli~--tS~k~---~~n~~~l~~~l~h~l 247 (415)
++|. ++|+| |+|+ .. +..+.+.+.++.++.+++ ..+++ +|+++ +.+++.|++.|...+
T Consensus 111 ~i~~~ivvvNNK~Dl-~~---------~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 111 GFKHGIIALTRSDST-HM---------HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp TCCEEEEEECCGGGS-CH---------HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred CCCeEEEEEEeccCC-CH---------HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 7787 89999 9998 42 223334445666666554 68999 99999 999999999887654
No 250
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.62 E-value=2.3e-07 Score=97.97 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=46.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC----CC-----CCCcEEEEeceeec----CCCC-c-----cccceEEEEEecCcccc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI----DS-----PEKGLALEYAYINV----SDEY-R-----EDHTRLGVWILDGEPAH 80 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl----~~-----p~~G~il~~~~~~v----~~~~-~-----~~~~~l~i~~l~g~~~~ 80 (415)
-+++|+|+.++|||||+++|.+. .. ++.|... ...+. .... . -....+.+|+++|+..|
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~--~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATE--IPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEE--EEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEE--EeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 48999999999999999999752 11 1222211 10000 0000 0 01125899999998887
Q ss_pred hhhhhhccCCCCCCchh-hHHHHhcCC
Q psy13975 81 SNLLRFALNQETLPHTM-VMLVVSMTT 106 (415)
Q Consensus 81 ~~Ll~~~l~~~~~~~~~-v~~~~d~~~ 106 (415)
..+ ....+..+. +++++|.++
T Consensus 84 ~~~-----~~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 84 TTL-----RKRGGALADLAILIVDINE 105 (594)
T ss_dssp TTS-----BCSSSBSCSEEEEEEETTT
T ss_pred HHH-----HHHHHhhCCEEEEEEECCC
Confidence 666 333444444 466777766
No 251
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.61 E-value=2e-08 Score=104.66 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=30.2
Q ss_pred eEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC
Q psy13975 10 VLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE 46 (415)
Q Consensus 10 s~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~ 46 (415)
+..|.+| ++++|+|+||||||||++.|+|...+.
T Consensus 275 ~g~i~~G---~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 275 GGGFFKD---SIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp TSSEESS---CEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCCC---cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 3478999 999999999999999999999886664
No 252
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.59 E-value=2.6e-07 Score=91.67 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=31.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~G 41 (415)
...+++++|++.+| +++|+|+||+|||||+.+|.+
T Consensus 14 ~~~~~~~~~~~~~g----~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 14 YRNLAPGTLNFPEG----VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp BTTCCSEEEECCSE----EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceeeeEEEEcCC----eEEEECCCCCChhHHHHHHHH
Confidence 35688999999988 999999999999999999974
No 253
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.59 E-value=5.6e-08 Score=99.61 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=41.0
Q ss_pred CCc-EEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-----CeEEEeccCCcccHH
Q psy13975 180 GVD-IVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-----AGLFYTSAKEDKNCD 237 (415)
Q Consensus 180 gvp-iivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-----asli~tS~k~~~n~~ 237 (415)
++| ++||+||+|+.. ++++.++.+.+.++.++..+| +.++++|++++.|++
T Consensus 144 ~v~~iivviNK~Dl~~-------~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 144 GVRQLIVAVNKMDSVK-------WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp TCCEEEEEEECGGGGT-------TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred CCCeEEEEEEcccccc-------CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence 776 999999999962 344556677777888888887 579999999999986
No 254
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.59 E-value=7.3e-08 Score=94.81 Aligned_cols=28 Identities=11% Similarity=0.022 Sum_probs=24.9
Q ss_pred CCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 222 GAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 222 Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
+...++|||++..|++.+|..+.+.++.
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999988875
No 255
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.58 E-value=4.3e-08 Score=103.91 Aligned_cols=53 Identities=11% Similarity=0.332 Sum_probs=41.2
Q ss_pred CCc-EEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-----eEEEeccCCcccHHHH
Q psy13975 180 GVD-IVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-----GLFYTSAKEDKNCDLL 239 (415)
Q Consensus 180 gvp-iivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-----sli~tS~k~~~n~~~l 239 (415)
|++ ++||+||+|+.. ++.+.++.+...++.++.++|. .++.+|++++.|++.+
T Consensus 304 gi~~iIVVvNKiDl~~-------~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 304 GIHNLIIAMNKMDNVD-------WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TCCEEEEEEECTTTTT-------TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred CCCeEEEEEecccccc-------hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 655 999999999863 3445666777777777777764 7999999999999754
No 256
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.58 E-value=2e-08 Score=108.72 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=35.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-CCCcE
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-PEKGL 49 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-p~~G~ 49 (415)
+.+++|++|+ | ++++|+|||||||||||+.+.|+.. +..|.
T Consensus 566 ~~vl~disl~---g---~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~ 607 (765)
T 1ewq_A 566 EFVPNDLEMA---H---ELVLITGPNMAGKSTFLRQTALIALLAQVGS 607 (765)
T ss_dssp CCCCEEEEES---S---CEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred ceEeeeccCC---C---cEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence 5689999999 8 9999999999999999999998753 55665
No 257
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.57 E-value=9.9e-09 Score=99.68 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeec
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINV 58 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v 58 (415)
++++|+|+||||||||+++|+|++.|+.|.++ +...++
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~-l~g~D~ 140 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM-FCAGDT 140 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE-EECCCC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE-EEeecC
Confidence 89999999999999999999999999999876 444454
No 258
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.54 E-value=2.2e-07 Score=90.95 Aligned_cols=73 Identities=8% Similarity=0.121 Sum_probs=47.6
Q ss_pred CCcEEEEEeCcchhhhhhhcc------------cCCh-hhHHHHHHHHHHH--HHHhCCeEEEeccCCcccHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDF------------YYKE-EHFDFVQQYIRKF--CLKFGAGLFYTSAKEDKNCDLLYKYLA 244 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~------------~~~~-e~~d~i~q~LR~l--~~~~Gasli~tS~k~~~n~~~l~~~l~ 244 (415)
++|+++|+||+|+...--+.. ..+. +-.++|.+....+ +...+...++|||++..|++.+|..+.
T Consensus 234 ~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~ 313 (327)
T 3ohm_A 234 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 313 (327)
T ss_dssp TCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence 789999999999976310000 1121 2223333222221 234566788999999999999999999
Q ss_pred HHHhCCCC
Q psy13975 245 HRLYGFPF 252 (415)
Q Consensus 245 h~l~~~~f 252 (415)
+.++...+
T Consensus 314 ~~Il~~~l 321 (327)
T 3ohm_A 314 DTILQLNL 321 (327)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhH
Confidence 99886544
No 259
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.54 E-value=2.7e-08 Score=105.09 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=41.9
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCe---EEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAG---LFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gas---li~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+... + .+.+ +..++..+|.. ++++|++++.+++.+++.+.+.+.
T Consensus 123 ~ipiIvViNKiDl~~a-------~---~~~v---~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 123 DLEVVPVLNKIDLPAA-------D---PERV---AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEEEEEECTTSTTC-------C---HHHH---HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred CCCEEEeeeccCcccc-------c---HHHH---HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 8899999999999631 1 1111 33444455653 899999999999999999987764
No 260
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.54 E-value=1.1e-08 Score=100.75 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=34.9
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcE
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGL 49 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~ 49 (415)
+++++++.+.++ .+++|+|++|+|||||++.|++...+..+.
T Consensus 45 ~~~~l~~~~~~~---~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~ 86 (341)
T 2p67_A 45 LLDAIMPYCGNT---LRLGVTGTPGAGKSTFLEAFGMLLIREGLK 86 (341)
T ss_dssp HHHHHGGGCSCS---EEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCcccCCC---EEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 456778888889 999999999999999999998766554444
No 261
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.54 E-value=8.9e-09 Score=106.13 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=40.8
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
+.|+++|+||+|+... .+.++ ++.++ .++..++++|++++.+++.+++.|...++
T Consensus 350 ~~piivV~NK~DL~~~------~~~~~-------~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 350 NKRYLVVINKVDVVEK------INEEE-------IKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TSSEEEEEEECSSCCC------CCHHH-------HHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CCCEEEEEECcccccc------cCHHH-------HHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6799999999999531 12122 23333 24568999999999999999999987665
No 262
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.53 E-value=4.9e-08 Score=91.84 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=37.9
Q ss_pred CCcEEEEEe-CcchhhhhhhcccCChhhHHHHH----HHHHHHHHHhCCeE-----EEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVT-KTDYMSTLEKDFYYKEEHFDFVQ----QYIRKFCLKFGAGL-----FYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~-K~Dl~~~lE~~~~~~~e~~d~i~----q~LR~l~~~~Gasl-----i~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
+.|+++|++ |+|+... .+ .+++. ..++.++..++..+ +.+|++.+.+++.++..|...+..
T Consensus 138 ~~~~i~vv~nK~Dl~~~-----~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 138 MGHTIVLFTHKEDLNGG-----SL----MDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGGEEEEEECGGGGTTC-----CH----HHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccEEEEEEcccccCCc-----cH----HHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 345555555 9999631 11 11111 22344555555432 679999999999999999877654
No 263
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.53 E-value=1.2e-07 Score=105.65 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=45.9
Q ss_pred CCc-EEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC-----CeEEEeccCCc--------ccHHHHHHHHHH
Q psy13975 180 GVD-IVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG-----AGLFYTSAKED--------KNCDLLYKYLAH 245 (415)
Q Consensus 180 gvp-iivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G-----asli~tS~k~~--------~n~~~l~~~l~h 245 (415)
++| ++||+||+|+.. +++.++.+.+.++.++.++| +.++++|++++ .+++.|++.|..
T Consensus 411 gIP~IIVVINKiDLv~--------d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 411 GVPYIIVFLNKCDMVD--------DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp TCSCEEEEEECCTTCC--------CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeeccccc--------chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 888 899999999963 12334556666778887777 57999999998 468889998876
Q ss_pred HH
Q psy13975 246 RL 247 (415)
Q Consensus 246 ~l 247 (415)
.+
T Consensus 483 ~I 484 (1289)
T 3avx_A 483 YI 484 (1289)
T ss_dssp TS
T ss_pred hc
Confidence 44
No 264
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.52 E-value=2.2e-07 Score=87.15 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=41.2
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHH----HHHHHHHHHhCCeEEEeccCC-----cccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQ----QYIRKFCLKFGAGLFYTSAKE-----DKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~----q~LR~l~~~~Gasli~tS~k~-----~~n~~~l~~~l~h~l~ 248 (415)
+.|++||+||.|+... ...+++. ..++.++.++|..+++.+.+. +.+++.|++.|...+-
T Consensus 139 ~~~iilv~nK~Dl~~~---------~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAGG---------SLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp GGEEEEEECGGGGTTC---------CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEchHhcCCC---------CHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 6799999999998531 1122332 236778888888777666554 5788888888866554
No 265
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.52 E-value=2.8e-07 Score=95.99 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.0
Q ss_pred eEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 224 GLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 224 sli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.+|++||+.+.+++.|++.+.+.+-
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p 276 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAP 276 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred EEEeccccCCccHHHHHHHHHHhCC
Confidence 6899999999999999999977653
No 266
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.52 E-value=8.8e-08 Score=101.04 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=42.5
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC---eEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA---GLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga---sli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+... + .+ ..+..++..+|. .++++|++++.+++.+++.+.+.+..
T Consensus 125 ~ipiIvviNKiDl~~a-------~---~~---~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 125 DLVIIPVINKIDLPSA-------D---VD---RVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp TCEEEEEEECTTSTTC-------C---HH---HHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCEEEEEeccCcccc-------C---HH---HHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 8899999999998531 1 11 123445555565 38999999999999999999887653
No 267
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.49 E-value=3.5e-08 Score=101.18 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=82.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhh---ccCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID----SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRF---ALNQET 92 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~----~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~---~l~~~~ 92 (415)
-+|+|+|+.|+|||||++.|.|.. ....|...++....+ .-....+.+|++.|...+...... ......
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i----~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQL----VVGGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEE----EETTEEEEECC--------------------CC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEE----EECCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 579999999999999999998631 222232111110000 001245678888886443333211 112234
Q ss_pred CCchh-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCC
Q psy13975 93 LPHTM-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPG 171 (415)
Q Consensus 93 ~~~~~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~ 171 (415)
+.... +++++|.++++.... .+.+..+ .
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~---------~~i~~~l----------------------------------------~-- 329 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD---------QEIYEQV----------------------------------------K-- 329 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH---------HHHHHHH----------------------------------------T--
T ss_pred hhcCCEEEEEeccCCCCCHHH---------HHHHHhc----------------------------------------c--
Confidence 44544 456778777554111 1112111 0
Q ss_pred ccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 172 EGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 172 e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
..|+++|+||+|+....+ ... ++.++ .+..++.+|++++.+++.+++.|...+..
T Consensus 330 --------~~piivV~NK~Dl~~~~~----~~~---------~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 330 --------HRPLILVMNKIDLVEKQL----ITS---------LEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp --------TSCEEEEEECTTSSCGGG----STT---------CCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred --------CCcEEEEEECCCCCcchh----hHH---------HHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 358999999999965311 110 11222 35679999999999999999999887654
No 268
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.49 E-value=1.6e-08 Score=103.60 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=33.6
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
+.|+++|+||+|+....+ ... ..+++.+| ..+.+|++.+.+++.|++.+...+-
T Consensus 131 ~~pvilV~NK~D~~~~~~---~~~-----------e~~~lg~~-~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 131 KKPVVLAVNKLDNTEMRA---NIY-----------DFYSLGFG-EPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CSCEEEEEECC------------C-----------CSGGGSSS-SEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred CCCEEEEEECccchhhhh---hHH-----------HHHHcCCC-ceEEeecccccchHHHHHHHHhhcc
Confidence 899999999999864211 010 11112222 4679999999999999999877653
No 269
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.44 E-value=6e-08 Score=90.73 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=25.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
+.+|+|+||++.+| ++++|+|+||||||||+++|.|++
T Consensus 12 ~~~l~~isl~i~~g---~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 12 DLGTENLYFQSMRP---FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----------CCS---EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeecceeccCCCC---EEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999 999999999999999999999864
No 270
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.44 E-value=1.4e-08 Score=100.64 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=36.0
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKY 242 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~ 242 (415)
|.|+++|+||+|++.. ... . ...++.++..++..++.++++.+.+++..+..
T Consensus 203 ~~~~i~V~nK~Dl~~~---~~~----~----~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 203 GDRTFGVLTKIDLMDK---GTD----A----VEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp CTTEEEEEECGGGCCT---TCC----S----HHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred CCCEEEEEeCCccCCC---ccc----H----HHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 8899999999999752 111 1 12234445567788999999998887765444
No 271
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.44 E-value=1.5e-07 Score=86.00 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=37.3
Q ss_pred CCeeeEeE-EEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 4 PYYDVFVL-RFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 4 ~iL~~vs~-~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+.|+++.+ .|.+| +.++|+|+||||||||++.|++...+..|.++
T Consensus 10 ~~Ld~~~~ggi~~G---~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~ 55 (235)
T 2w0m_A 10 LDFDKLIQGGIPQG---FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI 55 (235)
T ss_dssp HHHHGGGTTSEETT---CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHhcCCCcCC---CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 45777777 78999 99999999999999999999976655556654
No 272
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.42 E-value=8e-08 Score=98.67 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=43.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeec
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINV 58 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v 58 (415)
.+|+++||+|.+ ++++|+|+||||||||+++|+|+.+|+.|.+. +.+.++
T Consensus 18 ~~l~~vsl~i~~----e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~-~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE----LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN-FRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS----SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC-CCCTTS
T ss_pred ccccceEEEEcc----ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE-ECCEEc
Confidence 579999999986 49999999999999999999999999999854 444444
No 273
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.40 E-value=4.2e-08 Score=101.34 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=86.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC--C-CCCCcEEEEeceeecCCCCccccceEEEEEecCcccchhhhhhccCCCCCCch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI--D-SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHSNLLRFALNQETLPHT 96 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl--~-~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~ 96 (415)
.+++|+|+.++|||||+++|.+. . ....|.........+. .....+.+|+++|+..|..+ ....+..+
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~----~~~~~i~~iDTPGhe~f~~~-----~~~~~~~a 75 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVE----TENGMITFLDTPGHAAFTSM-----RARGAQAT 75 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCC----TTSSCCCEECCCTTTCCTTS-----BCSSSBSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEE----ECCEEEEEEECCCcHHHHHH-----HHHHHhhC
Confidence 68999999999999999999742 1 1111211111111111 11246789999998877655 23333443
Q ss_pred h-hHHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhcccccccchhhhhhccccCccccCCCcccc
Q psy13975 97 M-VMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGIL 175 (415)
Q Consensus 97 ~-v~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l 175 (415)
. +++++|..+... ..|.+.+. ++..
T Consensus 76 D~aILVVda~~g~~-----~qT~e~l~-~~~~------------------------------------------------ 101 (501)
T 1zo1_I 76 DIVVLVVAADDGVM-----PQTIEAIQ-HAKA------------------------------------------------ 101 (501)
T ss_dssp SSEEEEEETTTBSC-----TTTHHHHH-HHHH------------------------------------------------
T ss_pred CEEEEEeecccCcc-----HHHHHHHH-HHHh------------------------------------------------
Confidence 3 355666554211 11111111 1111
Q ss_pred ccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC--CeEEEeccCCcccHHHHHHHHHHH
Q psy13975 176 ERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG--AGLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 176 ~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G--asli~tS~k~~~n~~~l~~~l~h~ 246 (415)
.++|+++|+||+|+.... ++ .+..+..+ ...++..+| ..++++|++++.+++.|++.+...
T Consensus 102 ---~~vPiIVviNKiDl~~~~-~~-~v~~~l~~-----~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 102 ---AQVPVVVAVNKIDKPEAD-PD-RVKNELSQ-----YGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp ---TTCCEEEEEECSSSSTTC-CC-CTTCCCCC-----CCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred ---cCceEEEEEEeccccccC-HH-HHHHHHHH-----hhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 188999999999996421 11 11100000 001223344 689999999999999999998754
No 274
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.36 E-value=6e-07 Score=82.06 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=27.7
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP 45 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p 45 (415)
-|++| ++++|+|+||||||||++.|+|...+
T Consensus 21 gi~~G---~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQ---AITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESS---EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCC---cEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 47889 99999999999999999999985544
No 275
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.36 E-value=1.1e-07 Score=87.81 Aligned_cols=39 Identities=23% Similarity=0.108 Sum_probs=23.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHh-CCCCC
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQ-GIDSP 45 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~-Gl~~p 45 (415)
...+++||++.+| ++++|+|+||||||||+++|. |+.++
T Consensus 15 ~~~~~~sl~v~~G---~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVG---VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECC---CEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCC---CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 3578999999999 999999999999999999999 98743
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.34 E-value=2.8e-07 Score=91.06 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=33.0
Q ss_pred eeeE-eEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC--CCCC
Q psy13975 6 YDVF-VLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID--SPEK 47 (415)
Q Consensus 6 L~~v-s~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~--~p~~ 47 (415)
||.+ .+.|++| ++++|+|+||||||||++.|++.. +|+.
T Consensus 120 LD~lL~ggi~~G---~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~ 161 (349)
T 1pzn_A 120 LDKLLGGGIETQ---AITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161 (349)
T ss_dssp HHHHHTSSEESS---EEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred HHHHhcCCCCCC---eEEEEECCCCCCHHHHHHHHHHHhccchhc
Confidence 4444 5789999 999999999999999999999876 5555
No 277
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.33 E-value=7.5e-08 Score=95.64 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=41.1
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
++++++|.|.+| +.++|+|+||||||||+++|.|+++|+.|.+.
T Consensus 164 ~~~~l~~~i~~G---~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ 207 (361)
T 2gza_A 164 YMSFLRRAVQLE---RVIVVAGETGSGKTTLMKALMQEIPFDQRLIT 207 (361)
T ss_dssp HHHHHHHHHHTT---CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE
T ss_pred HHHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhcCCCCceEEE
Confidence 348999999999 99999999999999999999999999999865
No 278
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.32 E-value=1.9e-07 Score=89.02 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=25.8
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
-|.+| +.++|+|+||||||||++.|++..
T Consensus 26 gl~~G---~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAG---TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETT---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCC---CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47789 999999999999999999998643
No 279
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.32 E-value=3.5e-07 Score=84.73 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=29.2
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHh--CCCCCCCcE
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQ--GIDSPEKGL 49 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~--Gl~~p~~G~ 49 (415)
.|++| ++++|+|+||||||||+++|+ |+..+..+.
T Consensus 26 gi~~G---~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~ 62 (251)
T 2ehv_A 26 GFPEG---TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPG 62 (251)
T ss_dssp SEETT---CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCC---cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeE
Confidence 68899 999999999999999999998 663444444
No 280
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.30 E-value=3.2e-06 Score=76.88 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=42.9
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++|+++|+||+|+... ... ..+.+.+.++.+ ..++.++++|++++.+++.++.+|...+..
T Consensus 154 ~~~~iiv~NK~Dl~~~----~~~---~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 154 RVADLIVINKVALAEA----VGA---DVEKMKADAKLI--NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HTCSEEEEECGGGHHH----HTC---CHHHHHHHHHHH--CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hcCCEEEEecccCCcc----hhh---HHHHHHHHHHHh--CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 5788999999999642 111 233334444433 235789999999999999999999877654
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.29 E-value=6.9e-08 Score=91.63 Aligned_cols=43 Identities=21% Similarity=0.136 Sum_probs=39.0
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEE
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE-KGLAL 51 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~-~G~il 51 (415)
++|++++ +.+| ++++|+|+||||||||+++|.|++.|+ .|.++
T Consensus 15 ~vl~~i~--i~~g---~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~ 58 (261)
T 2eyu_A 15 DKVLELC--HRKM---GLILVTGPTGSGKSTTIASMIDYINQTKSYHII 58 (261)
T ss_dssp THHHHGG--GCSS---EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHh--hCCC---CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE
Confidence 4788888 8999 999999999999999999999998887 88865
No 282
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.29 E-value=1e-06 Score=85.90 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC--------CCCCcEE
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID--------SPEKGLA 50 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~--------~p~~G~i 50 (415)
++++|+|+|||||||||+.|.|.. .++.|.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i 43 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV 43 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCccc
Confidence 689999999999999999999886 6677774
No 283
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.28 E-value=9.2e-07 Score=87.33 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
.+++|+|++|||||||+++|.|...+..|.+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~ 106 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS 106 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 79999999999999999999987666656543
No 284
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.28 E-value=1.3e-07 Score=90.47 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=36.9
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHH--HHHHhC-CeEEEeccCCcccHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRK--FCLKFG-AGLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~--l~~~~G-asli~tS~k~~~n~~~l~~~l~h 245 (415)
+.|+++|+||+|+... ... ..+. ++. .+.++| ..++.+|++++.+++.+++.+..
T Consensus 192 ~~~~i~V~NK~Dl~~~---~~~----~~~~----~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 192 GQRTIGVITKLDLMDE---GTD----ARDV----LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CSSEEEEEECGGGSCT---TCC----CHHH----HTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred CCeEEEEEEccccCCC---Cch----HHHH----HhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 7899999999999742 110 1111 221 112234 36788999999999999998865
No 285
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.27 E-value=8.2e-06 Score=81.95 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYK 241 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~ 241 (415)
..|+++|+||+|+.. .+. +.. ++..+...|+.++.+||+.+.+++.+++
T Consensus 214 ~kP~i~v~NK~D~~~---------~~~---l~~-l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAAS---------DEQ---IKR-LVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSC---------HHH---HHH-HHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccc---------hHH---HHH-HHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 689999999999751 122 222 2333333488999999999888865443
No 286
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.25 E-value=2.3e-07 Score=89.91 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=31.0
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+..| ++++|+|+||||||||+++|. +..|+.|.+.
T Consensus 162 ~l~G---~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~ 196 (302)
T 2yv5_A 162 YLEG---FICILAGPSGVGKSSILSRLT-GEELRTQEVS 196 (302)
T ss_dssp HTTT---CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-
T ss_pred hccC---cEEEEECCCCCCHHHHHHHHH-HhhCcccccc
Confidence 4457 899999999999999999999 9999999865
No 287
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.25 E-value=1.1e-06 Score=94.35 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
-+|+|+|+.|+|||||++.|.|.
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999985
No 288
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.22 E-value=1e-06 Score=87.25 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=33.3
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEE
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS-PEKGLAL 51 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~-p~~G~il 51 (415)
++++++. .+| ++++|+|+||||||||+++|.|... +..|.+.
T Consensus 206 l~~L~~~-~~G---~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~ 248 (358)
T 2rcn_A 206 LKPLEEA-LTG---RISIFAGQSGVGKSSLLNALLGLQNEILTNDVS 248 (358)
T ss_dssp HHHHHHH-HTT---SEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred HHHHHHh-cCC---CEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence 4455543 367 8999999999999999999999998 9999865
No 289
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.21 E-value=7.3e-07 Score=97.07 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=33.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
+.+++|++|+ .+| ++++|+|||||||||||+.+.|+
T Consensus 595 ~~vlndisl~-~~g---~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 595 PFIANPLNLS-PQR---RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCCCEEEEEC-SSS---CEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeeeccccc-CCC---cEEEEECCCCCChHHHHHHHHHH
Confidence 5689999999 889 99999999999999999999986
No 290
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.19 E-value=2.2e-07 Score=95.36 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=40.0
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
-+++||++.+| ++++|+|+||||||||+++|+|++.++.|.++
T Consensus 283 ~~~Isl~i~~G---eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 283 DEPLNVEGKAP---FVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp BCCCCCCSCTT---EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCceeeccCC---eEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 46899999999 99999999999999999999999988889876
No 291
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.19 E-value=4.2e-06 Score=75.85 Aligned_cols=34 Identities=26% Similarity=0.184 Sum_probs=28.9
Q ss_pred CeeeEeE-EEcCCCcccEEEEEcCCCCcHHHHHHHHhC
Q psy13975 5 YYDVFVL-RFNDGSVIGNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 5 iL~~vs~-~i~~G~~~e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.|+.+.. -|++| +.++|+|++|||||||++.|++
T Consensus 8 ~LD~~l~Ggi~~G---~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPG---VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTT---SEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCC---EEEEEECCCCCCHHHHHHHHHH
Confidence 3555544 57889 9999999999999999999988
No 292
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.16 E-value=5.5e-06 Score=77.39 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=40.4
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChh--hHHHHHHHH--------------HHHHHHhC--CeEEEeccCCcccHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEE--HFDFVQQYI--------------RKFCLKFG--AGLFYTSAKEDKNCDLLYK 241 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e--~~d~i~q~L--------------R~l~~~~G--asli~tS~k~~~n~~~l~~ 241 (415)
++|+++|+||+|+....+.+ .+.+. +.+.+...+ -.++.+++ +.++.+|++++.+++.+++
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKE-RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHH-HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred CCCeEEEEecccccccccHH-HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence 78999999999996431100 00000 001111111 11234444 4789999999999999999
Q ss_pred HHHHHH
Q psy13975 242 YLAHRL 247 (415)
Q Consensus 242 ~l~h~l 247 (415)
+|...+
T Consensus 250 ~i~~~~ 255 (262)
T 1yrb_A 250 LAYEHY 255 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 997654
No 293
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.14 E-value=7.1e-07 Score=80.29 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=25.9
Q ss_pred eEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 10 VLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 10 s~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
|+++.+| ++++|+|+||||||||+++|.|+.
T Consensus 1 s~~m~~g---~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKA---NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCC---CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCC---cEEEEECcCCCCHHHHHHHHHhhC
Confidence 5778889 999999999999999999999985
No 294
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.14 E-value=6.2e-07 Score=84.67 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~ 81 (415)
-+++|+|..|+|||||++.|.|-.. +..+.........+ ......+.+|+++|...+.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR----TMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEE----EETTEEEEEEECCCSEETT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEE----EECCeeEEEEECCCCCCcc
Confidence 5799999999999999999997532 11111100000000 1123478899999976553
No 295
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.13 E-value=8.7e-08 Score=87.72 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=41.9
Q ss_pred cCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 179 LGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 179 lgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++.|.++|+||+|+... .... .+.+.+.++.+ ..++.++++|++++.+++.++..+...+.
T Consensus 163 ~~~~~iiv~NK~Dl~~~----~~~~---~~~~~~~~~~~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 163 MKTADLIVINKIDLADA----VGAD---IKKMENDAKRI--NPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HTTCSEEEEECGGGHHH----HTCC---HHHHHHHHHHH--CTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhcCCEEEEeccccCch----hHHH---HHHHHHHHHHh--CCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 36778999999999642 1111 22222233322 23678999999999999999999987654
No 296
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.11 E-value=1.1e-06 Score=77.69 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=29.9
Q ss_pred eEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q psy13975 10 VLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48 (415)
Q Consensus 10 s~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G 48 (415)
+|.+.+| +.++|+|+||+|||||++.+++...+..|
T Consensus 32 ~~~~~~g---~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEG---KGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGC---CEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCC---CEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 3566778 99999999999999999999987654444
No 297
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.06 E-value=2.8e-07 Score=89.41 Aligned_cols=35 Identities=26% Similarity=0.138 Sum_probs=32.1
Q ss_pred cCCCcccEEEEEcCCCCcHHHHHHHHhCCCC--CCCcEEE
Q psy13975 14 NDGSVIGNILLISDNSSGKTTLIAKLQGIDS--PEKGLAL 51 (415)
Q Consensus 14 ~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~--p~~G~il 51 (415)
.+| ++++|+|+||||||||+++|.|+.. |+.|.+.
T Consensus 78 ~~g---~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 78 RIP---YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp CCC---EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred CCC---EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 788 9999999999999999999999877 8889865
No 298
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.05 E-value=3.8e-06 Score=83.19 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=31.1
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEE
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE-KGLAL 51 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~-~G~il 51 (415)
.+.+| ..++|+|+||||||||+++|.|+..++ .|.++
T Consensus 119 ~~~~~---g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~ 156 (356)
T 3jvv_A 119 SDVPR---GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL 156 (356)
T ss_dssp HHCSS---EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred HhCCC---CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEE
Confidence 45667 899999999999999999999988776 45543
No 299
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.03 E-value=4.9e-07 Score=93.77 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=41.1
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
.+++++++.+..| ++++|+|+||||||||+++|+|+.+|+.|.+.
T Consensus 248 ~~l~~l~~~v~~g---~~i~I~GptGSGKTTlL~aL~~~i~~~~giit 292 (511)
T 2oap_1 248 GVLAYLWLAIEHK---FSAIVVGETASGKTTTLNAIMMFIPPDAKVVS 292 (511)
T ss_dssp HHHHHHHHHHHTT---CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE
T ss_pred HHHHHHHHHHhCC---CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEE
Confidence 3577889999999 99999999999999999999999999998865
No 300
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.03 E-value=1.4e-05 Score=86.10 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=21.9
Q ss_pred CeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 223 AGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 223 asli~tS~k~~~n~~~l~~~l~h~l 247 (415)
..+++.|++.+.+++.|++.+++.+
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~l 286 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYL 286 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHC
Confidence 3689999999999999999998765
No 301
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.02 E-value=2.5e-06 Score=80.83 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=36.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeecCCCCccccceEEEEEecCcccch
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS----PEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~----p~~G~il~~~~~~v~~~~~~~~~~l~i~~l~g~~~~~ 81 (415)
-+++|+|..|+|||||++.|.|... +..|... ...... .......+.+|+++|...+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~--~~~~~~--~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGP--RPVMVS--RSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCS--SCEEEE--EEETTEEEEEEECCCSEETT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcce--eeEEEE--EeeCCeEEEEEECCCCCCCc
Confidence 5899999999999999999987532 1122110 000000 01123568899999976543
No 302
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.02 E-value=1.1e-05 Score=79.70 Aligned_cols=34 Identities=6% Similarity=0.121 Sum_probs=26.1
Q ss_pred ceEEEEEecCcccchhhhhhccCCCCCCchh-hHHHHhcC
Q psy13975 67 TRLGVWILDGEPAHSNLLRFALNQETLPHTM-VMLVVSMT 105 (415)
Q Consensus 67 ~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~-v~~~~d~~ 105 (415)
..+.+|+++|+..+..+ ...++++.. +++++|++
T Consensus 183 v~l~iwDtaGQe~~r~~-----~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERRK-----WIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp -EEEEEEECCSTTGGGG-----TGGGCTTEEEEEEEEEGG
T ss_pred eeeEEEECCCchhhhHH-----HHHHhCCCCEEEEEEECc
Confidence 46789999999988887 566777776 46778876
No 303
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.02 E-value=6.1e-06 Score=85.94 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.2
Q ss_pred eEEEeccCCcccHHHHHHHHHHHH
Q psy13975 224 GLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 224 sli~tS~k~~~n~~~l~~~l~h~l 247 (415)
.+++.||..+.+++.|++.+.+.+
T Consensus 253 Pv~~gSA~~~~Gv~~LLd~i~~~~ 276 (529)
T 2h5e_A 253 PVFFGTALGNFGVDHMLDGLVEWA 276 (529)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHS
T ss_pred EEEeeecccCCCHHHHHHHHHHhC
Confidence 589999999999999999987764
No 304
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.01 E-value=7.3e-06 Score=81.04 Aligned_cols=131 Identities=10% Similarity=0.147 Sum_probs=76.1
Q ss_pred ceEEEEEecCcccchhhhhhccCCCCCCchh-hHHHHhcCCchhH------HHHHHhHHHHHHHHHhhhcCChhhHHHHH
Q psy13975 67 TRLGVWILDGEPAHSNLLRFALNQETLPHTM-VMLVVSMTTPWNI------IDELHNWASVLQDHIDSLNIGAHDYQAGR 139 (415)
Q Consensus 67 ~~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~-v~~~~d~~~p~~~------l~~l~~w~~~l~~~~~~L~lSgGekQRl~ 139 (415)
..+.+|+++|+..+..+ ...++.++. +++++|+++..+. .+.+..|...++..+..-
T Consensus 193 ~~l~iwDt~GQe~~r~~-----w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~----------- 256 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKK-----WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK----------- 256 (353)
T ss_dssp EEEEEEEECCSGGGGGG-----GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG-----------
T ss_pred eeEEEEeCCCchhhhHH-----HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc-----------
Confidence 45788999999988877 555667766 4678888773210 011222222223333110
Q ss_pred HHHHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcc-----------cCChhh-H
Q psy13975 140 CCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDF-----------YYKEEH-F 207 (415)
Q Consensus 140 LArAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~-----------~~~~e~-~ 207 (415)
.. -++|+++|+||+|+...-.+.. ..+.++ .
T Consensus 257 ---------------------------~~----------~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~ 299 (353)
T 1cip_A 257 ---------------------------WF----------TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAA 299 (353)
T ss_dssp ---------------------------GG----------TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHH
T ss_pred ---------------------------cc----------cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHH
Confidence 00 1789999999999964210000 122222 1
Q ss_pred HHHHHHHHHHH---HHhCCeEEEeccCCcccHHHHHHHHHHHHhCC
Q psy13975 208 DFVQQYIRKFC---LKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF 250 (415)
Q Consensus 208 d~i~q~LR~l~---~~~Gasli~tS~k~~~n~~~l~~~l~h~l~~~ 250 (415)
+++......+. ...++.+++|||+++.|++.+|..+...++..
T Consensus 300 ~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 300 AYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 12211111110 13567889999999999999999999888754
No 305
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.00 E-value=5.4e-06 Score=81.89 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=41.1
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHh-------CCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKF-------GAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~-------Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
..|+++|+||+|+... +..+...+.++...... +..++.+|++++.+++.+++.|...+.
T Consensus 217 ~~p~ivVlNK~Dl~~~---------~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 217 ELADIVVVNKADGEHH---------KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GGCSEEEEECCCGGGH---------HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcCh---------hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999998632 11222222233322222 567999999999999999999977654
No 306
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.00 E-value=3.9e-06 Score=74.55 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=29.7
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
.+.+| ++++|+|+||||||||+++|+|. +..|.+.
T Consensus 5 ~i~~g---~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~ 39 (191)
T 1zp6_A 5 DDLGG---NILLLSGHPGSGKSTIAEALANL--PGVPKVH 39 (191)
T ss_dssp -CCTT---EEEEEEECTTSCHHHHHHHHHTC--SSSCEEE
T ss_pred CCCCC---eEEEEECCCCCCHHHHHHHHHhc--cCCCeEE
Confidence 46788 99999999999999999999998 5667643
No 307
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.00 E-value=8.9e-06 Score=78.50 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=75.1
Q ss_pred eEEEEEecCcccchhhhhhccCCCCCCchhh-HHHHhcCCchhHHHHHHhHHHHHHHHHhhhcCChhhHHHHHHHHHhhc
Q psy13975 68 RLGVWILDGEPAHSNLLRFALNQETLPHTMV-MLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCCKLLTF 146 (415)
Q Consensus 68 ~l~i~~l~g~~~~~~Ll~~~l~~~~~~~~~v-~~~~d~~~p~~~l~~l~~w~~~l~~~~~~L~lSgGekQRl~LArAl~~ 146 (415)
.+.+|++ ++.|..| .+.++.+..+ ++++|.+++...++.+..|...++. .
T Consensus 64 ~~~iwD~--qer~~~l-----~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~------------------ 114 (301)
T 1u0l_A 64 SGVIENV--LHRKNLL-----TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----N------------------ 114 (301)
T ss_dssp SEEEEEE--CCCSCEE-----TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----T------------------
T ss_pred eEEEEEE--cccccee-----eccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----C------------------
Confidence 6789999 5666666 5667777774 6889998876335666777432211 1
Q ss_pred ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhC--Ce
Q psy13975 147 ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFG--AG 224 (415)
Q Consensus 147 ~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~G--as 224 (415)
++|+++|+||+|+... + .. ..++.++..++ ..
T Consensus 115 ---------------------------------~~piilv~NK~DL~~~----~-----~v----~~~~~~~~~~~~~~~ 148 (301)
T 1u0l_A 115 ---------------------------------ELETVMVINKMDLYDE----D-----DL----RKVRELEEIYSGLYP 148 (301)
T ss_dssp ---------------------------------TCEEEEEECCGGGCCH----H-----HH----HHHHHHHHHHTTTSC
T ss_pred ---------------------------------CCCEEEEEeHHHcCCc----h-----hH----HHHHHHHHHHhhhCc
Confidence 7899999999999642 1 11 12455666667 88
Q ss_pred EEEeccCCcccHHHHHHHHHHHHh
Q psy13975 225 LFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 225 li~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
+++|||+++.+++.++..+...++
T Consensus 149 ~~~~SAktg~gv~~lf~~l~geiv 172 (301)
T 1u0l_A 149 IVKTSAKTGMGIEELKEYLKGKIS 172 (301)
T ss_dssp EEECCTTTCTTHHHHHHHHSSSEE
T ss_pred EEEEECCCCcCHHHHHHHhcCCeE
Confidence 999999999999999998865433
No 308
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.98 E-value=3.1e-06 Score=74.82 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCe--eeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q psy13975 4 PYY--DVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48 (415)
Q Consensus 4 ~iL--~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G 48 (415)
..+ ++++|.+.+| ..+|+|+||||||||+.+|.++..+..|
T Consensus 13 ~~~~~~~~~~~~~~g----~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG----FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp GGGCSSCEEEECCSS----EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred EeecCccEEEecCCC----cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 346 7899999988 8999999999999999999877665544
No 309
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.97 E-value=7.7e-07 Score=88.23 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=36.3
Q ss_pred eeeEeEEEcC--CCcccEEEEEcCCCCcHHHHHHHHhCCCCCCC
Q psy13975 6 YDVFVLRFND--GSVIGNILLISDNSSGKTTLIAKLQGIDSPEK 47 (415)
Q Consensus 6 L~~vs~~i~~--G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~ 47 (415)
.+.|+++|.+ | ++++|+|+||||||||+++|+|++.|+.
T Consensus 158 ~~~v~~~v~~~lg---~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 158 WKFIPKEARPFFA---KTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGGSCTTTGGGTC---EEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhhCCHHHHHhhh---CeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4668899999 9 9999999999999999999999999887
No 310
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.95 E-value=6.6e-06 Score=88.38 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.1
Q ss_pred CeEEEeccCCcccHHHHHHHHHHHH
Q psy13975 223 AGLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 223 asli~tS~k~~~n~~~l~~~l~h~l 247 (415)
..+++.|++.+.+++.|++.+.+.+
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~l 280 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYL 280 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHS
T ss_pred eEEEEeecccCcCHHHHHHHHHHhC
Confidence 3689999999999999999998765
No 311
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.95 E-value=2.8e-06 Score=78.38 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=26.8
Q ss_pred EeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy13975 9 FVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP 45 (415)
Q Consensus 9 vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p 45 (415)
-.-..++| +.++|+||||||||||+++|.|+.+|
T Consensus 9 ~~~~~~~G---~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 9 HHHHMAQG---TLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ------CC---CEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred ccccCCCC---cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 34567889 99999999999999999999998876
No 312
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.95 E-value=2e-06 Score=77.82 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=23.5
Q ss_pred cCCCcccEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 14 NDGSVIGNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 14 ~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
.+| +.++|+||||||||||+++|.|+++
T Consensus 2 ~~g---~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGP---RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ------CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCC---CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356 9999999999999999999998764
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.93 E-value=2.1e-06 Score=77.37 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecCCCCccccceEEEEEe
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWIL 74 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~~~~~~~~~~l~i~~l 74 (415)
++++|+|+||||||||+++|+|+++ ++| +. +++.+.... .....++++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~-~~g~~~~~~-~~~~~~ig~~~~ 52 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VP-VDGFYTEEV-RQGGRRIGFDVV 52 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CC-CEEEECCEE-ETTSSEEEEEEE
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EE-EcCEecchh-HhhhceEEEEEE
Confidence 8999999999999999999999988 788 43 444444221 122445565544
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.91 E-value=4.6e-06 Score=74.88 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=28.5
Q ss_pred EEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q psy13975 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48 (415)
Q Consensus 11 ~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G 48 (415)
++|.+| ++++|+|++|||||||+++|.+...|+.|
T Consensus 1 m~i~~g---~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKG---LLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCC---CEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCC---CEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 467889 99999999999999999999998766433
No 315
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.90 E-value=3.2e-06 Score=75.39 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcE
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGL 49 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~ 49 (415)
++++|+||||||||||+++|.|+.++..|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 789999999999999999999988654443
No 316
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.90 E-value=3.1e-06 Score=81.72 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=30.0
Q ss_pred EEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 11 ~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
|++..| ++++|+|+|||||||||++|.|+..|+.|.+.
T Consensus 164 f~~l~g---eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~ 201 (301)
T 1u0l_A 164 KEYLKG---KISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 201 (301)
T ss_dssp HHHHSS---SEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred HHHhcC---CeEEEECCCCCcHHHHHHHhccccccccccee
Confidence 345567 99999999999999999999999999999865
No 317
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.89 E-value=1.2e-05 Score=79.80 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=43.2
Q ss_pred CCcEEEEEeCcchhhhhhhcc-------cCCh--hhHHHHHHHHH----HHHH---HhCCeEEEeccCCcccHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDF-------YYKE--EHFDFVQQYIR----KFCL---KFGAGLFYTSAKEDKNCDLLYKYL 243 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~-------~~~~--e~~d~i~q~LR----~l~~---~~Gasli~tS~k~~~n~~~l~~~l 243 (415)
++|+++|+||+|+.+.-.+.. +|.. ...+...++++ .++. ..+..+++|||+++.|++.+|..+
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 789999999999975210000 0000 11222223222 1212 346788999999999999999999
Q ss_pred HHHHhC
Q psy13975 244 AHRLYG 249 (415)
Q Consensus 244 ~h~l~~ 249 (415)
...++.
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 318
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.89 E-value=5.6e-06 Score=74.56 Aligned_cols=38 Identities=21% Similarity=0.069 Sum_probs=24.0
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..+++||||++.+| ++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~---~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAM---VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CC---CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCC---CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35799999999999 999999999999999999998543
No 319
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.85 E-value=3.8e-05 Score=70.52 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=26.5
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhC--CCCC
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQG--IDSP 45 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~G--l~~p 45 (415)
|++| +.++|+|+||||||||++.|++ ...+
T Consensus 21 i~~G---~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 21 IETG---SITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp EETT---SEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CcCC---eEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 6788 9999999999999999999997 4444
No 320
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.84 E-value=4.7e-06 Score=81.59 Aligned_cols=42 Identities=29% Similarity=0.157 Sum_probs=35.9
Q ss_pred cCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeecC
Q psy13975 14 NDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVS 59 (415)
Q Consensus 14 ~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v~ 59 (415)
.+| ++++|+|+||||||||+++|+|++.|+.|.++ +...+..
T Consensus 127 ~~g---~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~-l~g~D~~ 168 (328)
T 3e70_C 127 EKP---YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV-IAASDTF 168 (328)
T ss_dssp CSS---EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-EEEECCS
T ss_pred CCC---eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE-EEeeccc
Confidence 567 99999999999999999999999999999876 4555543
No 321
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.84 E-value=2.4e-05 Score=77.44 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=30.7
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
..|+++|+|+.|.- ++.. . ....++.++.++|+.++.+|++.
T Consensus 199 ~KPvi~v~N~~e~~--------~~~n--~-~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDG--------FENN--P-YLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTC--------SSSC--H-HHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCcEEEEEeccccc--------cccc--H-HHHHHHHHHHHcCCCEEEechHH
Confidence 68999999999852 1111 1 23447889888999999999864
No 322
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.83 E-value=3.3e-05 Score=77.48 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=23.8
Q ss_pred CCeEEEeccCCcccHHHHHHHHHHHHhC
Q psy13975 222 GAGLFYTSAKEDKNCDLLYKYLAHRLYG 249 (415)
Q Consensus 222 Gasli~tS~k~~~n~~~l~~~l~h~l~~ 249 (415)
++.+++|||+++.|++.+|..+...++.
T Consensus 358 ~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 358 YCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 5567789999999999999998877653
No 323
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.80 E-value=2.2e-05 Score=84.34 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.5
Q ss_pred eEEEeccCCcccHHHHHHHHHHHH
Q psy13975 224 GLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 224 sli~tS~k~~~n~~~l~~~l~h~l 247 (415)
.+++.|+..+.+++.|++.+.+.+
T Consensus 255 Pv~~gSA~~~~Gv~~LLd~i~~~l 278 (693)
T 2xex_A 255 PVLCGTAFKNKGVQLMLDAVIDYL 278 (693)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHS
T ss_pred eEEEeecccCcCHHHHHHHHHHHC
Confidence 589999999999999999997765
No 324
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.79 E-value=3.8e-06 Score=76.32 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=27.7
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE 46 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~ 46 (415)
..+| ++++|+|+||||||||+++|.|++.|.
T Consensus 19 ~~~g---~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGR---QLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSC---EEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCC---eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3567 999999999999999999999988764
No 325
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.78 E-value=1.6e-05 Score=68.62 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=25.4
Q ss_pred CCCcccEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy13975 15 DGSVIGNILLISDNSSGKTTLIAKLQGIDSP 45 (415)
Q Consensus 15 ~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p 45 (415)
+| +.++|+|++|+|||||++.+.+...+
T Consensus 35 ~g---~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HG---QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CC---SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CC---CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 67 99999999999999999999987654
No 326
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.77 E-value=3.1e-06 Score=83.46 Aligned_cols=57 Identities=25% Similarity=0.217 Sum_probs=37.3
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC-eEEEeccCCcccHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA-GLFYTSAKEDKNCDLLYKYLAH 245 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga-sli~tS~k~~~n~~~l~~~l~h 245 (415)
+.|+++|+||+|++..- .. ..+.+.. +.+.+++|. .++.+|++++.+++.+++.+..
T Consensus 197 ~~~~i~V~NK~Dl~~~~---~~----~~~~~~~--~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 197 GQRTIGVITKLDLMDEG---TD----ARDVLEN--KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CTTEEEEEECGGGSCTT---CC----CHHHHTT--CSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCceEEEeccccccCcc---hh----HHHHHhC--CcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 89999999999997421 10 1111110 112223453 5788999999999999988864
No 327
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.76 E-value=3e-05 Score=77.07 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=33.5
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCD 237 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~ 237 (415)
..|+++|+||+|.--. +. +... ....++.++.++|+.++.+|++.+..+.
T Consensus 201 ~KPvi~v~N~~e~d~~-~~------~~n~-~~~~v~~~a~~~g~~vv~iSAk~E~el~ 250 (368)
T 2dby_A 201 AKPVIYVANVAEEDLP-DG------RGNP-QVEAVRRKALEEGAEVVVVSARLEAELA 250 (368)
T ss_dssp GSCEEEEEECCGGGTT-TC------TTCH-HHHHHHHHHHHHTCEEEEECHHHHHHHH
T ss_pred cCCeEEeccccHHhhc-cc------chhh-HHHHHHHHHHHcCCeEEEeechhHHHHH
Confidence 6899999999984100 00 0011 2344788888899999999998754443
No 328
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.76 E-value=3e-06 Score=84.39 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=36.1
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEE
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE-KGLAL 51 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~-~G~il 51 (415)
+|++++ +.+| +.++|+|+||||||||++.|.|++.|+ .|.++
T Consensus 127 ~l~~l~--~~~g---~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~ 169 (372)
T 2ewv_A 127 KVLELC--HRKM---GLILVTGPTGSGKSTTIASMIDYINQTKSYHII 169 (372)
T ss_dssp SHHHHT--TSSS---EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE
T ss_pred HHHHHh--hcCC---CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE
Confidence 455554 7788 999999999999999999999998887 78865
No 329
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.73 E-value=7.9e-06 Score=78.62 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
-.|+|+|..|||||||++.|.|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 489999999999999999999864
No 330
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.71 E-value=3.6e-06 Score=81.65 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=26.0
Q ss_pred EEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 11 ~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+++.+| ++++|+|+||||||||+++|.|+..+..|.+.
T Consensus 168 ~~~~~G---~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 168 IPHFQD---KTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp GGGGTT---SEEEEEESHHHHHHHHHHHHCC----------
T ss_pred HhhcCC---CEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 456788 99999999999999999999999999988854
No 331
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.71 E-value=7.4e-06 Score=74.12 Aligned_cols=30 Identities=27% Similarity=0.110 Sum_probs=25.6
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP 45 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p 45 (415)
..+| ++++|+|+||||||||+++|.|++.|
T Consensus 3 ~~~~---~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 3 APKP---FVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp --CC---EEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCCc---EEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4577 99999999999999999999997654
No 332
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.67 E-value=5.9e-06 Score=83.48 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=34.9
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+|+++ + ..+| +.++|+|+||||||||++.|.|+..++.|.++
T Consensus 158 ~L~~l-~-~~~g---gii~I~GpnGSGKTTlL~allg~l~~~~g~I~ 199 (418)
T 1p9r_A 158 NFRRL-I-KRPH---GIILVTGPTGSGKSTTLYAGLQELNSSERNIL 199 (418)
T ss_dssp HHHHH-H-TSSS---EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE
T ss_pred HHHHH-H-HhcC---CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 34444 3 2567 89999999999999999999999888889866
No 333
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=1.8e-05 Score=70.22 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
+.++|+||||||||||+++|.+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 8999999999999999999998765
No 334
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.65 E-value=4.3e-05 Score=66.05 Aligned_cols=64 Identities=16% Similarity=-0.009 Sum_probs=48.6
Q ss_pred HHhhhcCChhhHHHHHHH------HHhhcccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhh
Q psy13975 124 HIDSLNIGAHDYQAGRCC------KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLE 197 (415)
Q Consensus 124 ~~~~L~lSgGekQRl~LA------rAl~~~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE 197 (415)
.+..| |+||+||++|| |++..++..+++|||
T Consensus 54 ~~~~L--SgGe~qrv~lA~~Lalaral~~~p~lllLDEP----------------------------------------- 90 (148)
T 1f2t_B 54 PLTFL--SGGERIALGLAFRLAMSLYLAGEISLLILDEP----------------------------------------- 90 (148)
T ss_dssp CGGGS--CHHHHHHHHHHHHHHHHHHHHSSCSEEEEESC-----------------------------------------
T ss_pred ChhHC--CHHHHHHHHHHhhhHHHHHHcCCCCEEEEECC-----------------------------------------
Confidence 35555 99999999876 778766666666665
Q ss_pred hcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 198 KDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 198 ~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+.++|.+..+.+.+.++.+.. .|.+++++||..
T Consensus 91 -t~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~ 123 (148)
T 1f2t_B 91 -TPYLDEERRRKLITIMERYLK-KIPQVILVSHDE 123 (148)
T ss_dssp -SCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG
T ss_pred -CccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH
Confidence 457777888889999998764 488999999653
No 335
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.63 E-value=0.00016 Score=72.62 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=25.9
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHH--hCCCCCC
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKL--QGIDSPE 46 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l--~Gl~~p~ 46 (415)
|++| ++++|+|++|||||||++.| .+..+++
T Consensus 175 I~~G---ei~~I~G~sGsGKTTLl~~la~~~~~p~~ 207 (400)
T 3lda_A 175 VETG---SITELFGEFRTGKSQLCHTLAVTCQIPLD 207 (400)
T ss_dssp EETT---SEEEEEESTTSSHHHHHHHHHHHTTSCGG
T ss_pred cCCC---cEEEEEcCCCCChHHHHHHHHHHhccCcc
Confidence 6788 99999999999999999965 4666553
No 336
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.59 E-value=1.3e-06 Score=81.18 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=32.5
Q ss_pred eEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEeceeec
Q psy13975 10 VLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINV 58 (415)
Q Consensus 10 s~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il~~~~~~v 58 (415)
+|+|.+ ++++|+||||||||||+++|+|++.|+.|.+. +.+.++
T Consensus 22 ~~~~~~----~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~-~~g~~~ 65 (227)
T 1qhl_A 22 TFDLDE----LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLH-FRNTTE 65 (227)
T ss_dssp EECHHH----HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--------
T ss_pred EEEEcC----cEEEEECCCCCCHHHHHHHHhcccccCCCeEE-ECCEEc
Confidence 566654 48899999999999999999999999999754 444433
No 337
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.59 E-value=4.8e-05 Score=83.44 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~ 40 (415)
.+++|+|+.|+|||||+.+|.
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll 40 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLV 40 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999986
No 338
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.58 E-value=2.4e-05 Score=72.75 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHh---CCCCCCCcEE
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ---GIDSPEKGLA 50 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~---Gl~~p~~G~i 50 (415)
++++|+|+||||||||+++|+ |+..++.|.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 799999999999999999999 9988888774
No 339
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.58 E-value=4.5e-06 Score=78.60 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=34.0
Q ss_pred CCCeeeEeEEEcC---CCcccEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 3 NPYYDVFVLRFND---GSVIGNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 3 ~~iL~~vs~~i~~---G~~~e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
..+|+++||+|.+ | ++++|+|++||||||+.+.|.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g---~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNG---RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CHHHHHHHHTTHHHHTT---CCEEEECSTTSCHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCC---CEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999 9 99999999999999999999864
No 340
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.50 E-value=4e-05 Score=68.94 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=24.3
Q ss_pred EEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 11 ~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
+...+| ++++|+|+||||||||++.|.+..
T Consensus 24 m~~~~g---~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 24 MTGEPT---RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ----CC---CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hcCCCC---cEEEEECCCCCCHHHHHHHHHHhh
Confidence 556678 999999999999999999998765
No 341
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=5e-05 Score=68.89 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=26.1
Q ss_pred cCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy13975 14 NDGSVIGNILLISDNSSGKTTLIAKLQGIDSP 45 (415)
Q Consensus 14 ~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p 45 (415)
.+| +.++|+||||||||||+++|.+.+.+
T Consensus 6 ~~g---~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERG---LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCC---CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCC---cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 457 99999999999999999999988765
No 342
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.45 E-value=5e-05 Score=68.84 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=25.7
Q ss_pred eEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 10 VLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 10 s~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
|+...+| +.++|+||+|||||||+++|.+.++
T Consensus 13 ~~~~~~g---~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGR---KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSC---CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCC---CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3455678 9999999999999999999987653
No 343
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.43 E-value=5.1e-05 Score=67.34 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLA 50 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~i 50 (415)
++++|+|+||||||||++.|++ +..|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g~~ 30 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLDNSA 30 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSSSEE
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccCCeE
Confidence 7999999999999999999986 445653
No 344
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.43 E-value=1.3e-05 Score=70.93 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEeceee
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPE---KGLALEYAYIN 57 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~---~G~il~~~~~~ 57 (415)
++++|+|++|||||||++.|.|++.|+ .|.+. ++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~-~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVK-RHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE-C----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEE-EcCcc
Confidence 689999999999999999999998887 67754 44433
No 345
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.41 E-value=3.7e-05 Score=81.32 Aligned_cols=31 Identities=35% Similarity=0.668 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEE
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSP-EKGLAL 51 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p-~~G~il 51 (415)
.++|+|+||||||||+++|+|+..| ++|.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt 78 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVT 78 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CC
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEE
Confidence 5999999999999999999999888 688754
No 346
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.39 E-value=4.2e-05 Score=71.70 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=30.6
Q ss_pred cCCCcccEEEEEcCCCCcHHHHHHHHh---CCCCCCCcEE
Q psy13975 14 NDGSVIGNILLISDNSSGKTTLIAKLQ---GIDSPEKGLA 50 (415)
Q Consensus 14 ~~G~~~e~v~IlG~nGsGKSTLl~~l~---Gl~~p~~G~i 50 (415)
.+| ++++|+|++||||||++++|+ |+..++.|.+
T Consensus 25 ~~g---~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i 61 (252)
T 4e22_A 25 AIA---PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61 (252)
T ss_dssp TTS---CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred CCC---cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCce
Confidence 567 899999999999999999999 9988888873
No 347
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.38 E-value=3e-05 Score=75.52 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=37.9
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
+++++|++.+| ++++|+|+||+||||++..|++.+.+..+.++
T Consensus 95 ~~~l~~~~~~~---~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 95 KYRIDFKENRL---NIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp -CCCCCCTTSC---EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCccccCCCC---eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 46889998999 99999999999999999999998877777766
No 348
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.36 E-value=2.4e-05 Score=77.99 Aligned_cols=41 Identities=29% Similarity=0.294 Sum_probs=35.6
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLA 50 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~i 50 (415)
.+|+++++.+++| +.++|+|++|||||||++.|.|.. .|.+
T Consensus 157 ~~l~~~~~~i~~~---~~i~l~G~~GsGKSTl~~~l~~~~---~g~~ 197 (377)
T 1svm_A 157 DFLKCMVYNIPKK---RYWLFKGPIDSGKTTLAAALLELC---GGKA 197 (377)
T ss_dssp HHHHHHHHCCTTC---CEEEEECSTTSSHHHHHHHHHHHH---CCEE
T ss_pred HHHHhcccccCCC---CEEEEECCCCCCHHHHHHHHHhhc---CCcE
Confidence 3678889999999 999999999999999999999753 4553
No 349
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.36 E-value=0.0001 Score=63.47 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=27.1
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~ 40 (415)
-+.+..+++.+| ..+|+|+||||||||+.+|.
T Consensus 13 ~~~~~~i~f~~g----~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 13 SHSDTVVEFKEG----INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp TBSSEEEECCSE----EEEEECCTTSSHHHHHHHHH
T ss_pred cCcceEEEcCCC----eEEEECCCCCCHHHHHHHHH
Confidence 356677787766 89999999999999999885
No 350
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.31 E-value=9.1e-05 Score=66.54 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=30.1
Q ss_pred eEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q psy13975 10 VLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLA 50 (415)
Q Consensus 10 s~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~i 50 (415)
++...+| ++++|+|++|||||||++.|.+.+. ..|.+
T Consensus 19 ~~~~~~g---~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 19 RLLDQKG---CVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp HHHTSCC---EEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred HhcCCCC---eEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 3334678 9999999999999999999998765 45653
No 351
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.25 E-value=8e-05 Score=77.84 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
-.|+|+|..|+|||||++.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999999753
No 352
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.24 E-value=3.5e-05 Score=73.29 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=30.7
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP 45 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p 45 (415)
+|++++|.++.| ++|+||||||||||+++|+|...+
T Consensus 35 ~l~~~~l~~~~G-----vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 35 QFKALGLVTPAG-----VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp HHHHTTCCCCSE-----EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCe-----EEEECCCCCcHHHHHHHHHHHcCC
Confidence 567777777765 899999999999999999997665
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.20 E-value=8.3e-05 Score=67.00 Aligned_cols=36 Identities=19% Similarity=-0.031 Sum_probs=30.2
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
...| .+++|+|++|||||||++.|.+.+.+..|.+.
T Consensus 19 ~~~~---~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 19 TAGR---LVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp CSSS---EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCC---eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 4567 99999999999999999999988766666643
No 354
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.17 E-value=0.00018 Score=79.25 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=28.2
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHH
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLI 36 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl 36 (415)
.-|+||+++|+.+ +.++|.|.+|||||||.
T Consensus 12 hNLkni~~~ip~~---~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKNITVRIPKN---RLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCSBCCEEETT---SEEEEEESTTSSSHHHH
T ss_pred cccCcceeccCCC---cEEEEECCCCCcHHHHH
Confidence 3599999999999 99999999999999995
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.16 E-value=4.9e-05 Score=74.08 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC--CCCcE
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDS--PEKGL 49 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~--p~~G~ 49 (415)
+++|+|+||||||||+++|.++.. ++.|.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~ 124 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence 899999999999999999998765 34444
No 356
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.14 E-value=0.00015 Score=63.04 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
++++|+|++|||||||.+.|.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 7899999999999999999987654
No 357
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.14 E-value=0.00014 Score=67.01 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=25.3
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
...+| ++++|+|+||||||||+++|.|.
T Consensus 16 ~~~~g---~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQP---FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCC---EEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCc---eEEEEECCCCCCHHHHHHHHHhc
Confidence 44667 99999999999999999999987
No 358
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.14 E-value=0.00026 Score=68.18 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=43.5
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCCeEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
++|+++|+||+|+... +..+.+ +.+..++.+.|..++++|++++.+++.|+..+...++
T Consensus 110 ~~~~ilV~NK~DL~~~---------~~v~~~-~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~ 168 (302)
T 2yv5_A 110 KVEPVIVFNKIDLLNE---------EEKKEL-ERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFIC 168 (302)
T ss_dssp TCEEEEEECCGGGCCH---------HHHHHH-HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEE
T ss_pred CCCEEEEEEcccCCCc---------cccHHH-HHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEE
Confidence 8999999999999642 111111 2245556667899999999999999999998865444
No 359
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.14 E-value=0.00019 Score=71.80 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=24.6
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhC
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+..| .+++|+|+||||||||+++|+|
T Consensus 16 ~v~~g---~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNN---LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSC---CEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCC---CEEEEECCCCCCHHHHHHHHHC
Confidence 45667 9999999999999999999998
No 360
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.13 E-value=9.2e-05 Score=71.65 Aligned_cols=40 Identities=23% Similarity=0.156 Sum_probs=33.7
Q ss_pred EeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 9 FVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 9 vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
++|...+| ++++|+|+|||||||++..|++.+.+..+.++
T Consensus 97 ~~~~~~~~---~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 97 LNVPPEPP---FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp CCCCSSSC---EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcccCCCC---eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 45556778 99999999999999999999998877766654
No 361
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.11 E-value=0.0002 Score=62.48 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
++++|+|++||||||+++.|.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 899999999999999999998753
No 362
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.08 E-value=0.00022 Score=72.03 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=28.4
Q ss_pred EEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCC
Q psy13975 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK 47 (415)
Q Consensus 11 ~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~ 47 (415)
+++..| ++++|+|+||||||||+.+|.++..+.+
T Consensus 21 ~~~~~~---~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGES---NFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTC---SEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEecCC---CEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 667778 8999999999999999999998765543
No 363
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.03 E-value=0.00035 Score=63.24 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=27.0
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~ 40 (415)
-+.+.++.+.+| ..+|+|+|||||||++.+|.
T Consensus 13 ~~~~~~i~f~~~----~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 13 SHSDTVVEFKEG----INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp TBSSEEEECCSE----EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEEeCCC----eEEEEcCCCCCHHHHHHHHH
Confidence 355677788777 99999999999999999885
No 364
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.01 E-value=0.00043 Score=76.12 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=47.2
Q ss_pred CChhhHHHHHHHHHhhccc--ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhH
Q psy13975 130 IGAHDYQAGRCCKLLTFAR--LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHF 207 (415)
Q Consensus 130 lSgGekQRl~LArAl~~~~--~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~ 207 (415)
||+||+||++||+++...+ ..+++||| +.++++...
T Consensus 505 LSGGEkQRV~LA~aL~~~~~~~llILDEP------------------------------------------TagLdp~~~ 542 (972)
T 2r6f_A 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEP------------------------------------------SIGLHQRDN 542 (972)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEECT------------------------------------------TTTCCGGGH
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCc------------------------------------------ccCCCHHHH
Confidence 3999999999999998543 34445554 457777888
Q ss_pred HHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 208 DFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 208 d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+.+.+.|+++. ..|.++|+++|..
T Consensus 543 ~~L~~~L~~Lr-~~G~TVIvVeHdl 566 (972)
T 2r6f_A 543 DRLIATLKSMR-DLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHHHHHHH-TTTCEEEEECCCH
T ss_pred HHHHHHHHHHH-hCCCEEEEEecCH
Confidence 89999999984 5799999999663
No 365
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.00 E-value=0.00051 Score=75.82 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=47.6
Q ss_pred CChhhHHHHHHHHHhhccc--ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhH
Q psy13975 130 IGAHDYQAGRCCKLLTFAR--LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHF 207 (415)
Q Consensus 130 lSgGekQRl~LArAl~~~~--~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~ 207 (415)
||+||+||++||+++...+ ..+++||| +.+++....
T Consensus 522 LSGGEkQRV~LA~aL~~~~~~~llILDEP------------------------------------------TagLdp~~~ 559 (993)
T 2ygr_A 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEP------------------------------------------SIGLHQRDN 559 (993)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEECT------------------------------------------TTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEeCc------------------------------------------ccCCCHHHH
Confidence 4999999999999998553 34445554 457778888
Q ss_pred HHHHHHHHHHHHHhCCeEEEeccCC
Q psy13975 208 DFVQQYIRKFCLKFGAGLFYTSAKE 232 (415)
Q Consensus 208 d~i~q~LR~l~~~~Gasli~tS~k~ 232 (415)
+.+...|+++. ..|.++|++||..
T Consensus 560 ~~L~~~L~~Lr-~~G~TVIvVeHdl 583 (993)
T 2ygr_A 560 RRLIETLTRLR-DLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHHHHHHH-HTTCEEEEECCCH
T ss_pred HHHHHHHHHHH-HcCCEEEEECCCH
Confidence 99999999985 5799999999763
No 366
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.00 E-value=0.00015 Score=69.67 Aligned_cols=40 Identities=33% Similarity=0.250 Sum_probs=34.7
Q ss_pred eeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 7 DVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 7 ~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
++++|+ +| ++++|+|+||+||||++..|++.+.+..|.++
T Consensus 91 ~~i~~~--~~---~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~ 130 (295)
T 1ls1_A 91 RLPVLK--DR---NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (295)
T ss_dssp CCCCCC--SS---EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred ceeecC--CC---eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 567777 78 99999999999999999999998877777755
No 367
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.95 E-value=0.00055 Score=74.73 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=28.3
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHH
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLI 36 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl 36 (415)
.-|+||+++|+.+ +.++|.|.+|||||||+
T Consensus 24 hNLkni~v~iP~~---~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 24 HNLKDISVKVPRD---ALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TTCCSEEEEEESS---SEEEEESSTTSSHHHHH
T ss_pred cCCCCeeEEecCC---CEEEEECCCCCCHHHHH
Confidence 3599999999999 99999999999999996
No 368
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.94 E-value=0.0003 Score=65.01 Aligned_cols=39 Identities=23% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCeeeEeEEEc---CCCcccEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy13975 4 PYYDVFVLRFN---DGSVIGNILLISDNSSGKTTLIAKLQGIDSP 45 (415)
Q Consensus 4 ~iL~~vs~~i~---~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p 45 (415)
.-|.+++|.+. .| ..++|.|++||||||++++|...+..
T Consensus 11 ~~~~~~~~~~~~~~~g---~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMS---AFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp ---------CCCCCCC---EEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCccCCCeeEeecCCC---eEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34778888887 78 99999999999999999999876655
No 369
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.93 E-value=0.00037 Score=62.65 Aligned_cols=30 Identities=33% Similarity=0.132 Sum_probs=26.5
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
++.+| .+++|+|++|||||||.+.|.+.+.
T Consensus 17 ~~~~~---~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKT---FIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCC---EEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCC---eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45677 9999999999999999999998753
No 370
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.93 E-value=0.00011 Score=68.31 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=28.5
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
+++++++.++.| ++|+|++|+|||||+++|++...
T Consensus 40 ~~~~~~~~~~~g-----~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 40 RFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHTTCCCCSE-----EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCe-----EEEECCCCCCHHHHHHHHHHHhC
Confidence 456667766655 88999999999999999998654
No 371
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.91 E-value=0.00018 Score=75.05 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=30.6
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G 48 (415)
.+.+| ++++|+|+||||||||+++|++.+.+..|
T Consensus 365 ~~~~G---~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 365 RERQG---FTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGGSC---EEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccccc---eEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 46678 99999999999999999999998888776
No 372
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.85 E-value=0.00014 Score=68.77 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=28.7
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
+|+++++.++.| ++|+|++|+|||||+++|++...
T Consensus 64 ~l~~~~~~~~~g-----vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 64 RFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHTTCCCCCE-----EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCe-----EEEECCCcChHHHHHHHHHHHcC
Confidence 456677776655 88999999999999999998764
No 373
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.83 E-value=0.00091 Score=69.17 Aligned_cols=57 Identities=5% Similarity=-0.111 Sum_probs=47.0
Q ss_pred ChhhHHHHHHHHHhhccc--ccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChhhHH
Q psy13975 131 GAHDYQAGRCCKLLTFAR--LRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEEHFD 208 (415)
Q Consensus 131 SgGekQRl~LArAl~~~~--~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e~~d 208 (415)
||||+||++||+++..++ ..+++|| ++.+++.....
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDE------------------------------------------p~~gld~~~~~ 436 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDE------------------------------------------VDAGIGGAAAI 436 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECS------------------------------------------CSSSCCTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeC------------------------------------------CcCCCCHHHHH
Confidence 999999999999998666 5555555 45678888889
Q ss_pred HHHHHHHHHHHHhCCeEEEeccC
Q psy13975 209 FVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 209 ~i~q~LR~l~~~~Gasli~tS~k 231 (415)
.|.+.|+.++. |.+++++||.
T Consensus 437 ~i~~~l~~~~~--~~~vi~itH~ 457 (517)
T 4ad8_A 437 AVAEQLSRLAD--TRQVLVVTHL 457 (517)
T ss_dssp HHHHHHHHHHH--HSEEEEECCC
T ss_pred HHHHHHHHHhC--CCEEEEEecC
Confidence 99999999974 8899999954
No 374
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.81 E-value=0.0012 Score=58.49 Aligned_cols=61 Identities=8% Similarity=0.061 Sum_probs=44.6
Q ss_pred HhhhcCChhhHHHHHHHHHhhcc----cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcc
Q psy13975 125 IDSLNIGAHDYQAGRCCKLLTFA----RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDF 200 (415)
Q Consensus 125 ~~~L~lSgGekQRl~LArAl~~~----~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~ 200 (415)
+..| |||||||++||+++... +..+++|| ++.
T Consensus 62 ~~~L--SgGekqr~ala~~la~~~~~~~~~llLDE------------------------------------------p~a 97 (173)
T 3kta_B 62 IEAM--SGGEKALTALAFVFAIQKFKPAPFYLFDE------------------------------------------IDA 97 (173)
T ss_dssp GGGC--CHHHHHHHHHHHHHHHHHHSCCSEEEEES------------------------------------------TTT
T ss_pred cccC--CHHHHHHHHHHHHHHhcccCCCCEEEECC------------------------------------------Ccc
Confidence 3445 99999999999999732 23344444 456
Q ss_pred cCChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 201 YYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 201 ~~~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
++|......+.+.|+.++. +..++.+|+.
T Consensus 98 ~LD~~~~~~~~~~l~~~~~--~~~~ivith~ 126 (173)
T 3kta_B 98 HLDDANVKRVADLIKESSK--ESQFIVITLR 126 (173)
T ss_dssp TCCHHHHHHHHHHHHHHTT--TSEEEEECSC
T ss_pred CCCHHHHHHHHHHHHHhcc--CCEEEEEEec
Confidence 7788888889999988763 4678888865
No 375
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.73 E-value=0.00035 Score=67.19 Aligned_cols=29 Identities=41% Similarity=0.502 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKG 48 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G 48 (415)
++++|+|+||+||||++..|++.+.++.|
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999998877667
No 376
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.69 E-value=0.00074 Score=59.70 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=25.8
Q ss_pred eEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 8 VFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 8 ~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
++||....+ .+++|+|+.||||||+.+.|...
T Consensus 2 ~~~~~~~~~---~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKG---INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSS---CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCC---CEEEEECCCCCCHHHHHHHHHHh
Confidence 578888889 99999999999999999999753
No 377
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.63 E-value=0.00088 Score=60.19 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=24.6
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
...+| ..++|+|++|||||||.+.|....
T Consensus 8 ~~~~~---~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARI---PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCC---CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccC---CEEEEECCCCCCHHHHHHHHHHhC
Confidence 35577 999999999999999999997644
No 378
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.61 E-value=0.001 Score=59.62 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
.+++|+|++||||||+.+.|.++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999983
No 379
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.61 E-value=0.00047 Score=71.35 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHh
Q psy13975 3 NPYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 3 ~~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~ 40 (415)
...+++++|++.+| ..+|+|+|||||||||..|.
T Consensus 48 f~~~~~~~l~f~~g----~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 48 LATITQLELELGGG----FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp BTTBSCEEEECCCS----EEEEEESHHHHHHHHTHHHH
T ss_pred ccceeeEEEecCCC----eEEEEcCCCCCHHHHHHHHH
Confidence 35688999999998 99999999999999999985
No 380
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.54 E-value=0.0014 Score=64.82 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=28.4
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHh
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~ 40 (415)
.+++..+++.+| ..+|+|+|||||||||..|.
T Consensus 15 ~~~~~~i~f~~g----l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG----IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE----EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC----eEEEECCCCCCHHHHHHHHH
Confidence 467888898888 99999999999999999875
No 381
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.52 E-value=0.00045 Score=72.87 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=36.8
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G 48 (415)
+++++++.+..| +.++|+||+|+|||||++.|.++..+..+
T Consensus 49 ~l~~l~~~i~~g---~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 89 (604)
T 3k1j_A 49 AVEVIKTAANQK---RHVLLIGEPGTGKSMLGQAMAELLPTETL 89 (604)
T ss_dssp HHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHTSCCSSC
T ss_pred hHhhccccccCC---CEEEEEeCCCCCHHHHHHHHhccCCcccC
Confidence 567788889999 99999999999999999999999887763
No 382
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.47 E-value=0.0012 Score=59.94 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC---CCCCcE
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID---SPEKGL 49 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~---~p~~G~ 49 (415)
.+++|+|++||||||+.+.|.+.+ .++.|.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~ 38 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 38 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence 689999999999999999997543 445554
No 383
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.47 E-value=0.0011 Score=59.26 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999998
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.39 E-value=0.0015 Score=57.14 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSP 45 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p 45 (415)
+.++|+|.+||||||+.+.|.+.+.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999999876544
No 385
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.0011 Score=60.59 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=27.0
Q ss_pred CCeeeE-eEEEcCCCcccEEEEEcCCCCcHHHHHHHHh
Q psy13975 4 PYYDVF-VLRFNDGSVIGNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 4 ~iL~~v-s~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~ 40 (415)
+.||.+ .--+++| +.++|+|++|+|||||+..++
T Consensus 10 ~~LD~~l~gGl~~G---~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 10 PGVDEILHGGIPER---NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTHHHHTTTSEETT---CEEEEEECTTSSHHHHHHHHH
T ss_pred hhHHHHcCCCCCCC---cEEEEECCCCCCHHHHHHHHH
Confidence 345555 4568899 999999999999999976664
No 386
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.22 E-value=0.0045 Score=60.57 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=26.5
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHh
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~ 40 (415)
|+.+.--+.+| +.++|.|++|+|||||+..|+
T Consensus 36 LD~~~gGl~~G---~LiiIaG~pG~GKTt~al~ia 67 (338)
T 4a1f_A 36 LDNYTSGFNKG---SLVIIGARPSMGKTSLMMNMV 67 (338)
T ss_dssp HHHHHCSBCTT---CEEEEEECTTSCHHHHHHHHH
T ss_pred HHHHhcCCCCC---cEEEEEeCCCCCHHHHHHHHH
Confidence 44444457888 999999999999999988876
No 387
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.22 E-value=0.0094 Score=58.87 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=47.3
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC---eEEEeccCCcccHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA---GLFYTSAKEDKNCDLLYKYLAHR 246 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga---sli~tS~k~~~n~~~l~~~l~h~ 246 (415)
+.|+++|+||+|+... . ...+.+.++++.++.++|. .++++|++++.+++.+++.+...
T Consensus 96 ~~p~ilV~NK~DL~~~-----~---~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPK-----S---VKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp SSCEEEEEECGGGSCT-----T---SCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEEEChhcCCc-----c---cCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6899999999999642 1 1234556677888888898 79999999999999999998654
No 388
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.19 E-value=0.0017 Score=63.21 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=28.4
Q ss_pred CeeeEeEEEcCC----CcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 5 YYDVFVLRFNDG----SVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 5 iL~~vs~~i~~G----~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
+++++++.+..| ..-+.++|+||||+|||||+++|+|..
T Consensus 33 ~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 33 VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344555555432 112579999999999999999999865
No 389
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.19 E-value=0.00052 Score=71.56 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=31.6
Q ss_pred eeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcE
Q psy13975 6 YDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGL 49 (415)
Q Consensus 6 L~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~ 49 (415)
+.++++++ +| +.++|+||+|+|||||++.|.+...+..+.
T Consensus 99 l~~~~~~~-~g---~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 99 VQKLTKSL-KG---PILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp HHHHSSSC-CS---CEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred HHHhcccC-CC---CEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 44555566 67 899999999999999999999876554444
No 390
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.15 E-value=0.0015 Score=65.95 Aligned_cols=40 Identities=33% Similarity=0.250 Sum_probs=34.0
Q ss_pred eeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 7 DVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 7 ~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
++++|+ ++ ++++|+|++|+||||++..|++.+.+..+.++
T Consensus 91 ~~i~l~--~~---~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 91 RLPVLK--DR---NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp CCCCCC--SS---EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ccccCC--CC---eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 466776 77 89999999999999999999998877767755
No 391
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.12 E-value=0.0025 Score=56.93 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
.+++|+|++||||||+.+.|.+.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997543
No 392
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.01 E-value=0.003 Score=60.47 Aligned_cols=26 Identities=15% Similarity=0.026 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSP 45 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p 45 (415)
.+++|+|++|||||||.+.|.+++.+
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999999987654
No 393
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.00 E-value=0.023 Score=59.09 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.7
Q ss_pred eEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 224 GLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 224 sli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.+++.|++.+..++.|++.+++.+-
T Consensus 270 PV~~gSA~~~~Gv~~LLd~iv~~~P 294 (548)
T 3vqt_A 270 PVFFGSAINNFGVREMLDMFVEFAP 294 (548)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred eeeecccccCcCHHHHHHHHHHhCC
Confidence 5899999999999999999977653
No 394
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.95 E-value=0.0034 Score=56.07 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
+-++|+||+|||||||++.|..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999863
No 395
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.95 E-value=0.0038 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
..++|.|+.||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999743
No 396
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.94 E-value=0.0036 Score=54.81 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999973
No 397
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.93 E-value=0.0039 Score=62.28 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.2
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
.+..+ .+++|+|.+|+|||||+++|+|.
T Consensus 18 ~i~~~---~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTS---LKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSC---CCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCC---CEEEEECCCCCCHHHHHHHHHCC
Confidence 44566 89999999999999999999986
No 398
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.93 E-value=0.0023 Score=62.08 Aligned_cols=32 Identities=28% Similarity=0.212 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC-CCCCCCcEEE
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG-IDSPEKGLAL 51 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G-l~~p~~G~il 51 (415)
..++|.|++|+|||||++.|.+ +..+..|.+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 3499999999999999999998 7788888743
No 399
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.91 E-value=0.00097 Score=64.10 Aligned_cols=39 Identities=21% Similarity=0.029 Sum_probs=32.3
Q ss_pred EeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 9 FVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 9 vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
++|++. + ++++++|++|+||||++..|++...+..+.++
T Consensus 92 i~~~~~-~---~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 92 VIPDKI-P---YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp CSCSSS-S---EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred cccCCC-C---eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 667655 7 89999999999999999999987766666654
No 400
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.91 E-value=0.0039 Score=58.73 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSPE 46 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p~ 46 (415)
+++|+|.+|+|||||++.|.|.....
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~~~ 126 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRASS 126 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred heEEeCCCCCCHHHHHHHHhcccccc
Confidence 89999999999999999999865433
No 401
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.87 E-value=0.0048 Score=54.23 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=27.2
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcE
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGL 49 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~ 49 (415)
..+| ..++|+|.+||||||+.+.|.+......+.
T Consensus 10 ~~~~---~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~ 43 (186)
T 2yvu_A 10 IEKG---IVVWLTGLPGSGKTTIATRLADLLQKEGYR 43 (186)
T ss_dssp CSCC---EEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cCCC---cEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 3467 899999999999999999998765444443
No 402
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.87 E-value=0.015 Score=57.35 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=47.4
Q ss_pred CCcEEEEEeCcchhhhhhhcccCChhhHHHHHHHHHHHHHHhCC---eEEEeccCCcccHHHHHHHHHHHH
Q psy13975 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGA---GLFYTSAKEDKNCDLLYKYLAHRL 247 (415)
Q Consensus 180 gvpiivV~~K~Dl~~~lE~~~~~~~e~~d~i~q~LR~l~~~~Ga---sli~tS~k~~~n~~~l~~~l~h~l 247 (415)
+.|+++|+||+|+... +...+.+.++++.++.++|. .++++|++++.+++.|++.+....
T Consensus 98 ~~piilV~NK~DLl~~--------~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 98 DNPILLVGNKADLLPR--------SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TSCEEEEEECGGGSCT--------TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhcCCC--------ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999742 11234556677777888887 789999999999999999986543
No 403
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.80 E-value=0.004 Score=55.01 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..++|+|++|||||||++.|.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 689999999999999999998654
No 404
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.78 E-value=0.0077 Score=60.57 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=45.0
Q ss_pred CChhhHHHHHHHHHhhc----ccccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccCChh
Q psy13975 130 IGAHDYQAGRCCKLLTF----ARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYYKEE 205 (415)
Q Consensus 130 lSgGekQRl~LArAl~~----~~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~~~e 205 (415)
+|+||+|+++||++|.. .+..+++|| ++.++|..
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDE------------------------------------------p~~~LD~~ 371 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDE------------------------------------------VDAALDIT 371 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESS------------------------------------------TTTTCCHH
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCC------------------------------------------CcccCCHH
Confidence 59999999999999983 234444454 44577888
Q ss_pred hHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 206 HFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 206 ~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
....+.+.|+.++. .|..+|++||.
T Consensus 372 ~~~~l~~~l~~~~~-~~~~~ii~th~ 396 (430)
T 1w1w_A 372 NVQRIAAYIRRHRN-PDLQFIVISLK 396 (430)
T ss_dssp HHHHHHHHHHHHCB-TTBEEEEECSC
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEECC
Confidence 88889888888753 37899999975
No 405
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.74 E-value=0.0027 Score=63.14 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=29.8
Q ss_pred eEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 8 VFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 8 ~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
|+.+.|.+| ++++|+|++|+|||||++.|.+.
T Consensus 166 D~~~pi~rG---Qr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRG---QRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTT---CEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCC---cEEEEecCCCCChhHHHHHHHHH
Confidence 788999999 99999999999999999998764
No 406
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.73 E-value=0.0011 Score=65.24 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=29.5
Q ss_pred CeeeEeEEEcCCCcccE--EEEEcCCCCcHHHHHHHHhCC
Q psy13975 5 YYDVFVLRFNDGSVIGN--ILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~--v~IlG~nGsGKSTLl~~l~Gl 42 (415)
+++.+++.+.+| +. ++|+|++||||||+.+.|++.
T Consensus 11 il~~l~~~i~~g---~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDN---YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTC---SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccC---CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 566777778888 76 999999999999999988753
No 407
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.71 E-value=0.0062 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..++|.|++||||||+.+.|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 789999999999999999998543
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.70 E-value=0.005 Score=55.43 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=27.7
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G 48 (415)
+..| ..++|+|.+||||||+.+.|.+.+.|..|
T Consensus 22 ~~~~---~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 22 NQRG---LTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp TSSC---EEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCC---CEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 4567 89999999999999999999877654445
No 409
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.63 E-value=0.0062 Score=52.03 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q psy13975 20 GNILLISDNSSGKTTLIAKL 39 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l 39 (415)
..++|.|+.||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 410
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.59 E-value=0.0062 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|.|..||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999999864
No 411
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.55 E-value=0.0073 Score=52.75 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|.|+.||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999874
No 412
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.0013 Score=64.00 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=30.5
Q ss_pred CeeeEeEEEcCCCcccE--EEEEcCCCCcHHHHHHHHhCCCCCC
Q psy13975 5 YYDVFVLRFNDGSVIGN--ILLISDNSSGKTTLIAKLQGIDSPE 46 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~--v~IlG~nGsGKSTLl~~l~Gl~~p~ 46 (415)
+++.++..+..| +. ++|.||+|+||||+++.+++...+.
T Consensus 33 ~~~~L~~~i~~g---~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 33 VITTVRKFVDEG---KLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHTT---CCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 445566667778 66 9999999999999999998754433
No 413
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.50 E-value=0.004 Score=61.33 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=29.1
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
|++| +.+.|.|++|+|||||+..++....+..|.++
T Consensus 58 i~~G---~i~~I~GppGsGKSTLal~la~~~~~~gg~Vl 93 (356)
T 3hr8_A 58 YPRG---RIVEIFGQESSGKTTLALHAIAEAQKMGGVAA 93 (356)
T ss_dssp EETT---EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCC---cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 5678 99999999999999999999865544455543
No 414
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.44 E-value=0.008 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999975
No 415
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.43 E-value=0.0079 Score=53.12 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy13975 21 NILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G 41 (415)
+++|.|..||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999975
No 416
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.35 E-value=0.0079 Score=52.26 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
++++|+|++||||||+.+.|+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 417
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.35 E-value=0.0092 Score=54.70 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|+|++||||||+.+.|.+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999974
No 418
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.33 E-value=0.0093 Score=52.82 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..++|.|+.||||||+.+.|...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998654
No 419
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.31 E-value=0.01 Score=61.19 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=32.5
Q ss_pred eEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhC--CCCCCCcEE
Q psy13975 8 VFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQG--IDSPEKGLA 50 (415)
Q Consensus 8 ~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~G--l~~p~~G~i 50 (415)
.+.+++.++ .+++|.|.+||||||+++.|.. +...+.+.+
T Consensus 159 pv~ldL~~~---pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v 200 (512)
T 2ius_A 159 PVVADLAKM---PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDV 200 (512)
T ss_dssp EEEEEGGGS---CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTE
T ss_pred EEEEEcccC---ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceE
Confidence 478889998 9999999999999999998864 445555553
No 420
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.29 E-value=0.0077 Score=52.49 Aligned_cols=21 Identities=48% Similarity=0.499 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~ 40 (415)
..++|+|++||||||+.+.|.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 789999999999999999997
No 421
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.27 E-value=0.01 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
++++|+|+.||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999963
No 422
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.26 E-value=0.0093 Score=55.61 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
+.++|+|++|||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999753
No 423
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.24 E-value=0.0039 Score=61.88 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
.+++|+|++|||||||++.+.+......+.++
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~ 67 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVI 67 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 79999999999999999999865445555544
No 424
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.24 E-value=0.0034 Score=64.70 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=28.3
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
+++++++.++.| ++|+||+|+|||||++.|.+...
T Consensus 55 ~~~~lg~~ip~G-----vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 55 RFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp GTTTTSCCCCSE-----EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhhccCCCCce-----EEEECCCCCCHHHHHHHHHHHhC
Confidence 456666766655 89999999999999999997653
No 425
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.21 E-value=0.011 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 426
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.18 E-value=0.0047 Score=55.27 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
.++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999986543
No 427
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.16 E-value=0.01 Score=56.50 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
..++|.|++||||||+.+.|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999753
No 428
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.14 E-value=0.0097 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..++|.|++|+|||||++.|.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 568999999999999999998653
No 429
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.13 E-value=0.012 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..|+|.|+.||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 7999999999999999999974
No 430
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.13 E-value=0.011 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..|+|.|+.||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 431
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.06 E-value=0.01 Score=62.93 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.9
Q ss_pred eEEEeccCCcccHHHHHHHHHHHHh
Q psy13975 224 GLFYTSAKEDKNCDLLYKYLAHRLY 248 (415)
Q Consensus 224 sli~tS~k~~~n~~~l~~~l~h~l~ 248 (415)
.+++.|++.+.+++.|++.+.+.+.
T Consensus 214 Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 214 PLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp CCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred cccccccccCCCchhHhhhhhcccc
Confidence 5788999999999999999987654
No 432
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.05 E-value=0.012 Score=52.39 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.4
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhC
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..+| ..|+|.|..||||||+.+.|..
T Consensus 6 ~~~~---~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRG---ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCC---CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCC---cEEEEECCCCCCHHHHHHHHHH
Confidence 3456 8999999999999999999974
No 433
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.03 E-value=0.0082 Score=55.81 Aligned_cols=29 Identities=28% Similarity=0.100 Sum_probs=24.4
Q ss_pred EEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 12 RFNDGSVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 12 ~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
....+ ..++|+|++||||||+.+.|...+
T Consensus 28 ~~~~~---~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 28 SSKQP---IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCSSC---EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cccCC---eEEEEECCCCCCHHHHHHHHHHhc
Confidence 34556 899999999999999999998654
No 434
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.02 E-value=0.013 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..++|+|++|||||||+..|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999987643
No 435
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.99 E-value=0.023 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
-.++|+|.+|+|||||++.|.|...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 4799999999999999999998653
No 436
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.96 E-value=0.014 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|+|+.||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999999974
No 437
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.95 E-value=0.014 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..|+|.|..||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 8999999999999999999974
No 438
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.93 E-value=0.0072 Score=65.90 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=27.2
Q ss_pred EEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCCC
Q psy13975 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDS 44 (415)
Q Consensus 11 ~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~~ 44 (415)
|.+..+ +.++|+|++|+|||||++.|++...
T Consensus 233 l~i~~~---~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPP---RGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCC---CEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCC---CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 456778 9999999999999999999998754
No 439
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.91 E-value=0.015 Score=50.79 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..|+|.|..||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999998863
No 440
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.84 E-value=0.016 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
.+++|+|+.||||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 68999999999999999999864
No 441
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.62 E-value=0.018 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
.++|.|+.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 442
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.61 E-value=0.013 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=16.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|.|..||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999973
No 443
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.59 E-value=0.018 Score=53.18 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~ 40 (415)
.+++|.|++||||||+.+.|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999997
No 444
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.56 E-value=0.019 Score=51.51 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q psy13975 21 NILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~ 40 (415)
+++|+|+.||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999995
No 445
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.50 E-value=0.02 Score=52.00 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|+|+.||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999974
No 446
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.47 E-value=0.019 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|.|..||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 447
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.45 E-value=0.023 Score=51.25 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|+|+.||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999974
No 448
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.45 E-value=0.02 Score=54.60 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.3
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
+..+ +.++|.||+|+|||||++.+.+..
T Consensus 46 ~~~~---~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPS---KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCC---SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCC---ceEEEECCCCcCHHHHHHHHHHHh
Confidence 4566 889999999999999999998654
No 449
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.43 E-value=0.021 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.373 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|.|+.||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999974
No 450
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.41 E-value=0.023 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
..++|.|+.|+|||||++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999998753
No 451
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.41 E-value=0.021 Score=51.19 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy13975 21 NILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G 41 (415)
+++|+|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999963
No 452
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.39 E-value=0.022 Score=55.82 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.1
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhC
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~G 41 (415)
+++| +.+.|.|++|+|||||+..++.
T Consensus 58 l~~G---~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 58 LPRG---RVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EETT---SEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCC---eEEEEECCCCCCHHHHHHHHHH
Confidence 5688 9999999999999999888764
No 453
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.38 E-value=0.025 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|.|+.|+|||||++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 454
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.34 E-value=0.02 Score=51.66 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|+|+.||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999973
No 455
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.29 E-value=0.026 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+|+|.|+.||||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999874
No 456
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.27 E-value=0.011 Score=59.64 Aligned_cols=32 Identities=28% Similarity=0.101 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLAL 51 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~il 51 (415)
.+++++|++||||||++..|+..+....+.++
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVl 129 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVG 129 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 89999999999999999999877666555544
No 457
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.26 E-value=0.023 Score=49.47 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|.|+.||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 458
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.25 E-value=0.018 Score=52.70 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=21.0
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHh
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~ 40 (415)
+..| +.++|+|++||||||++..+.
T Consensus 73 i~~g---~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQN---SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHC---SEEEEECCTTSSHHHHHHHHH
T ss_pred HhcC---CEEEEEeCCCCCcHHhHHHHH
Confidence 3457 899999999999999887653
No 459
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.24 E-value=0.026 Score=48.26 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy13975 21 NILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G 41 (415)
+++|.|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 460
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.23 E-value=0.028 Score=49.80 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+|+|+|+.||||||+.+.|..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 461
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.23 E-value=0.025 Score=49.36 Aligned_cols=21 Identities=38% Similarity=0.275 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy13975 21 NILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G 41 (415)
.++|.|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 462
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.19 E-value=0.044 Score=53.89 Aligned_cols=58 Identities=14% Similarity=0.000 Sum_probs=41.5
Q ss_pred CChhhHHHHH------HHHHhhcc-cccccchhhhhhccccCccccCCCccccccccCCcEEEEEeCcchhhhhhhcccC
Q psy13975 130 IGAHDYQAGR------CCKLLTFA-RLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFYY 202 (415)
Q Consensus 130 lSgGekQRl~------LArAl~~~-~~~~~lde~~s~~~~~~~~~lpL~e~~l~~nlgvpiivV~~K~Dl~~~lE~~~~~ 202 (415)
+|+||+||+. +|+++..+ +..+++||| +.++
T Consensus 281 lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp------------------------------------------~~~L 318 (371)
T 3auy_A 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEP------------------------------------------TVYL 318 (371)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEEST------------------------------------------TTTC
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCC------------------------------------------CCcC
Confidence 4999999985 45666655 555555654 4577
Q ss_pred ChhhHHHHHHHHHHHHHHhCCeEEEeccC
Q psy13975 203 KEEHFDFVQQYIRKFCLKFGAGLFYTSAK 231 (415)
Q Consensus 203 ~~e~~d~i~q~LR~l~~~~Gasli~tS~k 231 (415)
+.+..+.+.+.|+.+. .+..+|++||.
T Consensus 319 D~~~~~~l~~~l~~~~--~~~~vi~~th~ 345 (371)
T 3auy_A 319 DENRRAKLAEIFRKVK--SIPQMIIITHH 345 (371)
T ss_dssp CHHHHHHHHHHHHHCC--SCSEEEEEESC
T ss_pred CHHHHHHHHHHHHHhc--cCCeEEEEECh
Confidence 7788888888888753 24578889865
No 463
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.17 E-value=0.036 Score=53.50 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=28.4
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhC
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++..+.+ .| +-++|+|++|+|||||...|.+
T Consensus 134 ~~H~~~v~~-~g---~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YG---VGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TT---EEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CC---EEEEEEeCCCCCHHHHHHHHHh
Confidence 467777777 67 8999999999999999998874
No 464
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.12 E-value=0.028 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..|+|.|..||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999999999999874
No 465
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.04 E-value=0.029 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|.|+.||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999975
No 466
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.99 E-value=0.03 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
..++|.|++|+|||||++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998753
No 467
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.96 E-value=0.032 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|.|..||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999863
No 468
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.92 E-value=0.019 Score=54.29 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCCcE
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGL 49 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~~p~~G~ 49 (415)
..++|.|++|+|||||++.|.+......+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 589999999999999999998766555554
No 469
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.87 E-value=0.032 Score=50.64 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy13975 21 NILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G 41 (415)
.++|.|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 470
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.86 E-value=0.035 Score=51.21 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|+|+.||||||+.+.|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999963
No 471
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.85 E-value=0.011 Score=59.86 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=30.9
Q ss_pred CCeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 4 PYYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 4 ~iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
+.|+++..-+.+| +.++|.|++|+|||||+..|++..
T Consensus 191 ~~LD~~~gGl~~G---~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 191 TELDRMTSGFQRS---DLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHHSSBCTT---CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCC---CEEEEECCCCCCHHHHHHHHHHHH
Confidence 3466666678899 999999999999999999887643
No 472
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.82 E-value=0.03 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+|+|+|..||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
No 473
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.71 E-value=0.033 Score=49.99 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy13975 21 NILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~G 41 (415)
+++|.|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 474
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.71 E-value=0.03 Score=48.09 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|.|+.|+|||||++.+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 6889999999999999998864
No 475
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.65 E-value=0.032 Score=53.95 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..++|.|++|+|||||++.+.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998654
No 476
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.63 E-value=0.038 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..++|.||+|+|||||++.+.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 789999999999999999998643
No 477
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.59 E-value=0.037 Score=50.52 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~ 40 (415)
++++|+|+.||||+|..+.|+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999987
No 478
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.44 E-value=0.043 Score=49.42 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|+|+.||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 479
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.43 E-value=0.043 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q psy13975 21 NILLISDNSSGKTTLIAKLQGIDSPE 46 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~Gl~~p~ 46 (415)
.++|.|++|+|||||++.+.+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 89999999999999999998755443
No 480
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.28 E-value=0.045 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..++|.|+.|+|||||++.++...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 789999999999999999997543
No 481
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.25 E-value=0.046 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|.|+.|+|||||++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
No 482
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.22 E-value=0.04 Score=50.64 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=19.9
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
..+| ..|+|.|+.||||||+++.|...
T Consensus 22 m~~g---~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARG---KFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCC---CEEEEECCC---CHHHHHHHHHH
T ss_pred ccCC---eEEEEECCCCCCHHHHHHHHHHH
Confidence 3467 89999999999999999998743
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.22 E-value=0.079 Score=47.80 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=26.5
Q ss_pred CeeeEeEEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 5 YYDVFVLRFNDGSVIGNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 5 iL~~vs~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
.++..-+.+ .| +.++|+|++|+|||||...|...
T Consensus 24 ~lHa~~v~~-~g---~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YG---LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TT---EEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CC---EEEEEECCCCCCHHHHHHHHHHh
Confidence 455555555 46 78999999999999999988743
No 484
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.17 E-value=0.047 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 485
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.13 E-value=0.056 Score=49.27 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|+|+.||||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 486
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.10 E-value=0.051 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+++|.|..||||||+.+.|..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 487
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.07 E-value=0.05 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
.+|+|.|+.||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 488
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.07 E-value=0.052 Score=52.86 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=23.5
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhC
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~G 41 (415)
|++| +.+.|.|++|+|||||+..++.
T Consensus 119 l~~G---~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 119 IESM---AITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp BCSS---EEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCC---eEEEEECCCCCCHHHHHHHHHH
Confidence 6678 9999999999999999998874
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.04 E-value=0.057 Score=48.99 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=22.4
Q ss_pred cCCCcccEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 14 NDGSVIGNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 14 ~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
..| ..++|.|+.||||||+++.|...
T Consensus 4 m~g---~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTG---LFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CC---EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCc---eEEEEEcCCCCCHHHHHHHHHHH
Confidence 457 89999999999999999998743
No 490
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.86 E-value=0.053 Score=51.25 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q psy13975 20 GNILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~ 40 (415)
.+|+|.|+.||||||+.+.|.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999997
No 491
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.82 E-value=0.06 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..+.|.|+.|+|||++.+.|....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 689999999999999999997543
No 492
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.76 E-value=0.053 Score=51.87 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
..++|.|++|+|||||++.+.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999999998643
No 493
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.71 E-value=0.064 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
..++|.|+.|+|||||++.+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999753
No 494
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.58 E-value=0.066 Score=48.31 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q psy13975 21 NILLISDNSSGKTTLIAKLQ 40 (415)
Q Consensus 21 ~v~IlG~nGsGKSTLl~~l~ 40 (415)
+++|+|+.||||+|..+.|+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999997
No 495
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.56 E-value=0.07 Score=48.44 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
..|+|.|..||||||+++.|...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999998743
No 496
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.52 E-value=0.07 Score=51.40 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=23.5
Q ss_pred EcCCCcccEEEEEcCCCCcHHHHHHHHhC
Q psy13975 13 FNDGSVIGNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 13 i~~G~~~e~v~IlG~nGsGKSTLl~~l~G 41 (415)
+++| +.+.|.|++|+|||||+..++.
T Consensus 104 l~~G---~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 104 IETR---TMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp EETT---SEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCC---cEEEEECCCCCCHhHHHHHHHH
Confidence 6788 9999999999999999988864
No 497
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.49 E-value=0.073 Score=51.39 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQG 41 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~G 41 (415)
..++|+||+|||||||...|+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 6899999999999999999874
No 498
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.47 E-value=0.086 Score=51.37 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGID 43 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl~ 43 (415)
+.++|+||.|||||||...|+..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 689999999999999999998654
No 499
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.44 E-value=0.072 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 20 GNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 20 e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
..++|.|+.||||||+++.|...
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999998743
No 500
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.43 E-value=0.075 Score=54.05 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=24.9
Q ss_pred EEEcCCCcccEEEEEcCCCCcHHHHHHHHhCC
Q psy13975 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGI 42 (415)
Q Consensus 11 ~~i~~G~~~e~v~IlG~nGsGKSTLl~~l~Gl 42 (415)
+.+-+| ++++|+|++|+|||||++.|...
T Consensus 146 ~pi~kG---q~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 146 APYIKG---GKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp SCEETT---CEEEEECCSSSCHHHHHHHHHHH
T ss_pred hhhccC---CEEEEECCCCCCccHHHHHHHhh
Confidence 456678 89999999999999999988643
Done!