RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13975
(415 letters)
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 36.7 bits (84), Expect = 0.002
Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 7/156 (4%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
I+LI + GKT L+ + QG+ P +G + ++ + E + +L +W G+
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
++ + + + + + + L + + ++ +G A R
Sbjct: 68 RSITQSYYRSANALI-LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 126
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
A + + ++Y S + + +
Sbjct: 127 EVSQQRAEEFSE-----AQDMYYLETSAKESDNVEK 157
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 34.6 bits (78), Expect = 0.010
Identities = 20/158 (12%), Positives = 48/158 (30%)
Query: 19 IGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEP 78
I ++ L+ ++GK++L+A + N+ + R + + G
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 60
Query: 79 AHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAG 138
++ + + +++ + + + D + A
Sbjct: 61 EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120
Query: 139 RCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
LL ++A L L VS + G G+
Sbjct: 121 NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPA 158
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 33.8 bits (76), Expect = 0.019
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 6/155 (3%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
IL++ + +GKTT++ +LQ + + + +S + + +L VW L G+ +
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK----NLKLNVWDLGGQTSIR 75
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141
R +T V+ ELH + +L + A+
Sbjct: 76 PYWR-CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 134
Query: 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
++ L+EL + S I GEGI E
Sbjct: 135 SASEVSKELN-LVELKDRSWSIVASSAIKGEGITE 168
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 33.3 bits (75), Expect = 0.022
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 196 LEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248
L + E D + ++F + G SAK +N + + A ++Y
Sbjct: 114 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 33.4 bits (75), Expect = 0.026
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 12/69 (17%)
Query: 180 GVDIVVVVTKTDYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLL 239
V +V+V K D + + +G TSAK + +
Sbjct: 108 DVPMVLVGNKCDLA------------ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDA 155
Query: 240 YKYLAHRLY 248
+ L +
Sbjct: 156 FYTLVREIR 164
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 33.4 bits (75), Expect = 0.027
Identities = 14/118 (11%), Positives = 26/118 (22%), Gaps = 13/118 (11%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
I++ + GKTTL+ K+ + + R + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 82 NLLR-------------FALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHID 126
F + IIDE+ + D
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRD 120
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 33.4 bits (75), Expect = 0.029
Identities = 24/231 (10%), Positives = 61/231 (26%), Gaps = 59/231 (25%)
Query: 16 GSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILD 75
G+++ +++ D + GKT L+ PE+ + + + VS +
Sbjct: 6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQ----YLLGL 61
Query: 76 GEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDY 135
+ A + ++ S+ P + + W L+++ +
Sbjct: 62 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-------- 113
Query: 136 QAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMST 195
V +++ T+ D
Sbjct: 114 ---------------------------------------------VPFLLIGTQIDLRDD 128
Query: 196 LEKDFYYKEEHFDFV-QQYIRKFCLKFGAGLFY-TSAKEDKNCDLLYKYLA 244
+ + + + +K + GA + SA K ++
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.8 bits (74), Expect = 0.033
Identities = 23/156 (14%), Positives = 55/156 (35%), Gaps = 8/156 (5%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
ILLI D+ GK+ L+ + + +P + + + + +L +W G+
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 64
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
+ ++LV +T + + +V + D + ++
Sbjct: 65 RTITTAYYRGAMG----IILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 120
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
+++T + A EL ++ S + + E
Sbjct: 121 TRVVTADQGEALAKELGIPFIE---SSAKNDDNVNE 153
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 33.1 bits (74), Expect = 0.037
Identities = 29/225 (12%), Positives = 58/225 (25%), Gaps = 59/225 (26%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
++++ D + GKT L+ PE + + E L +W G +
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141
L + P T V+L+ + ++ + + H
Sbjct: 65 RLRPL-----SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-------------- 105
Query: 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMST-LEKDF 200
V I++V K D + +
Sbjct: 106 --------------------------------------NVPIILVGNKKDLRNDEHTRRE 127
Query: 201 YYKEEHFDFVQQYIRKFCLKFGAGLFY-TSAKEDKNCDLLYKYLA 244
K + + R + GA + SAK +++
Sbjct: 128 LAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT 172
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 32.8 bits (73), Expect = 0.043
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 191 DYMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248
D + L ++ + + + + TS KED N ++KYLA +
Sbjct: 106 DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163
Score = 30.8 bits (68), Expect = 0.18
Identities = 18/156 (11%), Positives = 49/156 (31%), Gaps = 8/156 (5%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++++ + + GK+++I + +GI + + + ++ + ++ RL +W G+
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 64
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
+ + +LV S T + V+ + D +
Sbjct: 65 DAITKAYYRG----AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 120
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
+ L + S + E
Sbjct: 121 DSCIKNEEAEGLAKRLKLRFYRTSVKE---DLNVSE 153
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 32.6 bits (73), Expect = 0.044
Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 12/158 (7%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
IL++ +++GKTT++ KL+ S I E T V +
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVT--------TIPTVGFNVETVTYKNVKFNVWDVGGQ 66
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDY---QAG 138
+ +R ++ VV IDE + + + + + Q
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDAIILIFANKQDL 125
Query: 139 RCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
+ + L + + G+G+ E
Sbjct: 126 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 163
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 32.4 bits (73), Expect = 0.052
Identities = 19/156 (12%), Positives = 50/156 (32%), Gaps = 7/156 (4%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
+LLI D+ GKT ++ + + + + + + E +L +W G+
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
+ A + + +V + + + NI + + N ++ + +G +
Sbjct: 69 RT-ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
A + + + S +
Sbjct: 128 QVSKERGEKLAL-----DYGIKFMETSAKANINVEN 158
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 32.4 bits (72), Expect = 0.054
Identities = 18/160 (11%), Positives = 43/160 (26%), Gaps = 8/160 (5%)
Query: 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA 79
G + ++ + GK+TL+ L G +A + + G +
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLG-----VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDT 60
Query: 80 HSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGR 139
E + + + + ++D H + +L
Sbjct: 61 PGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILL 120
Query: 140 CCKLLTFARLRAHLIELLSFYLFYS---SVSVIPGEGILE 176
L A+ ++ L + +S + + E
Sbjct: 121 VGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAE 160
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 31.9 bits (71), Expect = 0.065
Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 14/161 (8%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++L+ + + GK++++ + + K + A++ E + +W G+
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
++L ++V +T P + I H ++ + + G
Sbjct: 66 ASLAPMYYRN----AQAALVVYDVTKPQSFIKARHWV----KELHEQASKDIIIALVGNK 117
Query: 141 CKLLTFARLRAHLIELLSFY-----LFYSSVSVIPGEGILE 176
+L R E L + S GE + +
Sbjct: 118 IDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVND 158
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 32.2 bits (72), Expect = 0.065
Identities = 20/158 (12%), Positives = 42/158 (26%), Gaps = 7/158 (4%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++L+ D GK++L+ + + + ++N E + +W G+
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68
Query: 81 SNLLRFALNQET--LPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAG 138
+L L V S N E +A V + I +
Sbjct: 69 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 128
Query: 139 RCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
A+ ++ S +
Sbjct: 129 ERQVSTEEAQAWCRDNGDYPYF----ETSAKDATNVAA 162
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.6 bits (70), Expect = 0.11
Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 7/161 (4%)
Query: 20 GNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA 79
G +L + +++GKTTL+ L+ ++ + T +
Sbjct: 1 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 60
Query: 80 HSNLLRFA----LNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDY 135
+ + I EL + V+ + +
Sbjct: 61 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP---NAV 117
Query: 136 QAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
L + SV+ G LE
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 158
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.1 bits (69), Expect = 0.12
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 192 YMSTLEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFY-TSAKEDKNCDLLYKYLAHRLY 248
+D R C +Y T A N D +++ +A ++
Sbjct: 109 LALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166
Score = 25.7 bits (55), Expect = 9.0
Identities = 16/156 (10%), Positives = 32/156 (20%), Gaps = 6/156 (3%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
+ ++ D SGK++LI + Y + H + + G P
Sbjct: 7 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTH-LVLIREEAGAPDA 65
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
+++ + L + R
Sbjct: 66 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV 125
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
L A + Y G +
Sbjct: 126 VGDARARALCADM-----KRCSYYETCATYGLNVDR 156
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 31.0 bits (69), Expect = 0.15
Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 69/228 (30%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++LI D+ GK+ L+++ + + E + + S + + +W G+ +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
+ + L+V + + W L+DH DS
Sbjct: 67 R-----RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS------------- 108
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDF 200
+ I++V K+D
Sbjct: 109 ---------------------------------------NIVIMLVGNKSDLR------- 122
Query: 201 YYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248
R F K TSA + N + +K + +Y
Sbjct: 123 ----HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 31.0 bits (69), Expect = 0.18
Identities = 22/160 (13%), Positives = 50/160 (31%), Gaps = 15/160 (9%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
IL+I ++ GK++L+ + PE + + + + +L +W G+
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 69
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGR- 139
L +V V T + + L+ + + + +
Sbjct: 70 RTLTPSYYRGAQG-VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 128
Query: 140 ---CCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
+ L FAR + + + S +G+
Sbjct: 129 EVDRNEGLKFARKHS---------MLFIEASAKTCDGVQC 159
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.7 bits (68), Expect = 0.20
Identities = 23/225 (10%), Positives = 56/225 (24%), Gaps = 59/225 (26%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
+++ D + GKT L+ P + + + + + LG+W A
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD----TAGQ 63
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141
+ ++ S+ +P + + W ++ H +
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-------------- 109
Query: 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLE-KDF 200
I++V TK D + +
Sbjct: 110 ---------------------------------------TPIILVGTKLDLRDDKDTIEK 130
Query: 201 YYKEEHFDFVQQYIRKFCLKFGAGLFY-TSAKEDKNCDLLYKYLA 244
+++ + GA + SA + ++
Sbjct: 131 LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 30.4 bits (67), Expect = 0.24
Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
I++I D++ GKT L + G + + + + + ++ +W G+
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNI 130
+ + ++ V T L W + H+ + +I
Sbjct: 65 RKSMVQHY----YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI 110
Score = 28.1 bits (61), Expect = 1.5
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 196 LEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAK---EDKNCDLLYKYLA 244
L + +KF LF TSAK ++ + + ++ LA
Sbjct: 114 LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 30.2 bits (67), Expect = 0.24
Identities = 18/156 (11%), Positives = 48/156 (30%), Gaps = 7/156 (4%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
IL+I ++S GKT+ + + +P + + + + +L +W G+ +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
+ + + ++ + + + + D + D+ L +G
Sbjct: 68 RTITTAYY-RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
R A + S + +
Sbjct: 127 VVSSERGRQLAD-----HLGFEFFEASAKDNINVKQ 157
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 30.3 bits (67), Expect = 0.27
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKG 48
+LL+ SGK+T++ +++ I G
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEAGTG 31
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 30.3 bits (67), Expect = 0.28
Identities = 11/109 (10%), Positives = 28/109 (25%), Gaps = 5/109 (4%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
++++ GK+ L + + E +Y ++ +D
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVE-----DYEPTKADSYRKKVVLDGEEVQIDILDTAG 61
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNI 130
A+ L V T ++ + + N+
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 110
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 29.9 bits (66), Expect = 0.39
Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 1/104 (0%)
Query: 22 ILLISDNSSGKTTLIAKLQGID-SPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
+LL+ SGK+T I +++ I S + ++ G + H
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIH 64
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDH 124
++ ++V + + + +++
Sbjct: 65 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 108
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.8 bits (66), Expect = 0.41
Identities = 32/228 (14%), Positives = 60/228 (26%), Gaps = 69/228 (30%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++I D GK+ L+ + P L + + +L +W G+ +
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
++ R L+V T + L +W + H S
Sbjct: 66 RSITRSYYR-----GAAGALLVYDITRRETFNHLTSWLEDARQHSSS------------- 107
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDF 200
+ I+++ K+D
Sbjct: 108 ---------------------------------------NMVIMLIGNKSDL-------- 120
Query: 201 YYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLY 248
E D ++ F + G TSAK N + + A +Y
Sbjct: 121 ---ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 30.5 bits (68), Expect = 0.41
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 273 MKKIGILYENMQSIKPDDYYTDVITKPIVRKPISREQDTLVEDEQSFLARQLALLQQNPA 332
KK G+ M D + + TK K E L F+ + L
Sbjct: 228 AKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFT--- 284
Query: 333 ANPTTRQDNSLPQIRTPVGVQKTGDRRLSNSPAM 366
+ + +P + + + GD + A+
Sbjct: 285 -AIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKAL 317
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.6 bits (65), Expect = 0.43
Identities = 16/224 (7%), Positives = 46/224 (20%), Gaps = 66/224 (29%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
+ + GK++L+ + V +RE + +
Sbjct: 5 VAVFGAGGVGKSSLVLRF------------------VKGTFRESYIPTVEDTYRQVISC- 45
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141
+++ + + + + + +
Sbjct: 46 --------DKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYE 97
Query: 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKDFY 201
++ + I++V K
Sbjct: 98 QICEIKGDVESIP----------------------------IMLVGNK-----------C 118
Query: 202 YKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAH 245
+ + + TSAK + N L++ L +
Sbjct: 119 DESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.50
Identities = 22/157 (14%), Positives = 50/157 (31%), Gaps = 8/157 (5%)
Query: 22 ILLISDNSSGKTTLIAKLQG--IDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPA 79
++L+ D+ GKT L+ + + + + + N + +L +W G+
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68
Query: 80 HSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGR 139
+ + A ++ ++ V + + NI L Q + + +G A
Sbjct: 69 FRS-VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127
Query: 140 CCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
A + L + S G +
Sbjct: 128 RVVKREDGEKLAK-----EYGLPFMETSAKTGLNVDL 159
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.4 bits (65), Expect = 0.51
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
+LLI ++ GK+ L+ + + + + + + E +L +W G+
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNW 117
+ + +++V T + + W
Sbjct: 69 R-----TITSSYYRGSHGIIIVYDVTDQESFNGVKMW 100
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 29.8 bits (67), Expect = 0.51
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
S+I + GK+T+ + L+ P G
Sbjct: 23 FEAQPNSIIA---FAGPSGGGKSTIFSLLERFYQPTAG 57
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.2 bits (64), Expect = 0.53
Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 6/155 (3%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
IL++ +++GKTT++ KL+ + + + V + + VW + G+
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK----NISFTVWDVGGQDKIR 58
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141
L R +V + + A L
Sbjct: 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118
Query: 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
+L H + + + G+G+ E
Sbjct: 119 AAEITDKLGLHSLR--HRNWYIQATCATSGDGLYE 151
Score = 28.5 bits (62), Expect = 1.0
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 4/45 (8%)
Query: 203 KEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRL 247
E +R T A +L+++L
Sbjct: 120 AEITDKLGLHSLRHRNWYI----QATCATSGDGLYEGLDWLSNQL 160
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 29.3 bits (64), Expect = 0.53
Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 10/157 (6%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRL--GVWILDGEPA 79
+L++ +++GKTT++ K G D L + + + + G L
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 64
Query: 80 HSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGR 139
+ L + + L + D
Sbjct: 65 NYFESTDGLIWVVDSADRQRMQDCQRELQS-----LLVEERLAGATLLIFANKQDLPGAL 119
Query: 140 CCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
C + A L + S + S + GE +L
Sbjct: 120 SCNAIQEA---LELDSIRSHHWRIQGCSAVTGEDLLP 153
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.62
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 22 ILLISDNSSGKTTLIAKL 39
L+ SGKTT AKL
Sbjct: 13 WFLVGLQGSGKTTTAAKL 30
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 29.1 bits (64), Expect = 0.62
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 7/156 (4%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
L+I + +GK+ L+ + + + + + + + +L +W G+
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
++ R + +V + S T + + L + + +I + G
Sbjct: 68 RSVTRSYY-RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
A A EL+ + S + GE + E
Sbjct: 127 EVTFLEASRFAQENELM-----FLETSALTGENVEE 157
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.70
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 22 ILLISDNSSGKTTLIAKL 39
+L++ N GKTT IAKL
Sbjct: 9 VLVVGVNGVGKTTTIAKL 26
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 29.2 bits (65), Expect = 0.74
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
+ N G V +I N SGK+TLI + G ++G
Sbjct: 25 ISVNKGDVTL---IIGPNGSGKSTLINVITGFLKADEG 59
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.0 bits (64), Expect = 0.76
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 22 ILLISDNSSGKTTLIAKL 39
I+L+ +GK T KL
Sbjct: 15 IMLVGVQGTGKATTAGKL 32
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 28.9 bits (64), Expect = 0.78
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 22 ILLISDNSSGKTTLIAKL 39
I+++ N +GKTT KL
Sbjct: 14 IMVVGVNGTGKTTSCGKL 31
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 29.1 bits (64), Expect = 0.81
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDS 44
ILL+ SGK+T + +++ I
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIHG 27
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.8 bits (63), Expect = 0.89
Identities = 16/155 (10%), Positives = 48/155 (30%), Gaps = 6/155 (3%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
++++ +++GKTT++ + + + S+ + D S
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVV------HTSPTIGSNVEEIVINNTRFLMWDIGGQES 71
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141
+ +V++ + ++ E +D + + + Q + C
Sbjct: 72 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131
Query: 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
+ L + + + GEG+ +
Sbjct: 132 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 166
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.9 bits (64), Expect = 0.92
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 22 ILLISDNSSGKTTLIAKL 39
IL++ N GKTT I KL
Sbjct: 12 ILMVGVNGVGKTTTIGKL 29
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 29.1 bits (65), Expect = 0.94
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
L G ++ + SGKT+L+ + G +G
Sbjct: 57 LNIEKGEMLA---ITGSTGSGKTSLLMLILGELEASEG 91
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.4 bits (62), Expect = 0.95
Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 7/156 (4%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
+ L+ D GK++++ + + P + +++ + +Y+ + + +W G
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 66
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
L +V + T + + + I G
Sbjct: 67 RALAPMYYRGSAA-AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 125
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
+ A+ A S + + S I E
Sbjct: 126 EVMERDAKDYAD-----SIHAIFVETSAKNAININE 156
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 28.8 bits (64), Expect = 0.95
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
+G + G LI N +GKTT + + + P G
Sbjct: 23 FEIEEGEIFG---LIGPNGAGKTTTLRIISTLIKPSSG 57
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 29.0 bits (65), Expect = 1.0
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
L G + + + GK+TLI + G
Sbjct: 39 LSIEKGETVA---FVGMSGGGKSTLINLIPRFYDVTSG 73
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 28.8 bits (63), Expect = 1.0
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
+L + SGKT L +L + ++ + ++ ++D
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSL---TLIDLPGHE 58
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDH 124
S + ++ +V +V S + D VL D
Sbjct: 59 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS 102
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.5 bits (62), Expect = 1.1
Identities = 18/164 (10%), Positives = 41/164 (25%), Gaps = 12/164 (7%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
++ + +++GKTTL+ L+ + + + T + A
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELTIAGMTFTTFDLGGHIQARR 72
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141
+ + + + + + + D
Sbjct: 73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE 132
Query: 142 ---------KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
T + L EL + L SV+ +G E
Sbjct: 133 ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 176
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 28.7 bits (64), Expect = 1.3
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
L+ G VI +I + SGK+T + + ++ P +G
Sbjct: 23 LQARAGDVIS---IIGSSGSGKSTFLRCINFLEKPSEG 57
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 28.5 bits (63), Expect = 1.4
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
+ +G G ++ + +GKTT + + G+D P G
Sbjct: 26 INIENGERFG---ILGPSGAGKTTFMRIIAGLDVPSTG 60
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 28.3 bits (63), Expect = 1.6
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
L +G + ++ + SGK+T++ + +D P +G
Sbjct: 26 LNIKEGEFVS---IMGPSGSGKSTMLNIIGCLDKPTEG 60
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 28.0 bits (62), Expect = 1.7
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLG 70
L+ G ++ LI N +GKTT ++ + G+ +KG + + +
Sbjct: 27 LKVPRGQIVT---LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83
Query: 71 VW 72
Sbjct: 84 AL 85
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 27.6 bits (60), Expect = 1.8
Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 11/158 (6%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++L+ + GKT+L+ + + + + L +++ L +W G+
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
L +LV +T D + +++ L G
Sbjct: 66 HALGPIYYRD----SNGAILVYDITDE----DSFQKVKNWVKELRKMLGNEICLCIVGNK 117
Query: 141 CKLLTFARLRAHLIELL--SFYLFYSSVSVIPGEGILE 176
L + E S + S +GI E
Sbjct: 118 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEE 155
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 28.0 bits (62), Expect = 1.9
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 5 YYDVFVLR-----FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK 47
YD VL G+V+ N GKTTL+ + P K
Sbjct: 11 GYDKPVLERITMTIEKGNVVN---FHGPNGIGKTTLLKTISTYLKPLK 55
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.8 bits (60), Expect = 2.0
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 22 ILLISDNSSGKTTLIAKLQG 41
IL++ + +GKTT++ +LQ
Sbjct: 8 ILILGLDGAGKTTILYRLQV 27
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 27.6 bits (60), Expect = 2.1
Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 71/230 (30%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
++ + + S GKT+LI + + D + +
Sbjct: 3 LVFLGEQSVGKTSLITRF------------------MYDSFDNTY--------------- 29
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGR-- 139
+ + I +L + A G +++
Sbjct: 30 ---------QATIGIDFLSKTMYLEDRTIRLQLWDTA------------GQERFRSLIPS 68
Query: 140 CCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILERNLGVDIVVVVTKTDYMSTLEKD 199
+ A + + + SF + + ER V I++V KTD +K
Sbjct: 69 YIRDSAAAVVVYDITNVNSFQQTTKWIDDV----RTERGSDVIIMLVGNKTDLA---DKR 121
Query: 200 FYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYG 249
EE ++ TSAK N L++ +A L G
Sbjct: 122 QVSIEEGERKAKEL--------NVMFIETSAKAGYNVKQLFRRVAAALPG 163
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 27.7 bits (60), Expect = 2.2
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++ L GKTTLI K + ++E R+ R+G ++
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD----GFYTEEVRQGGRRIGFDVVTLSGTR 58
Query: 81 SNLLRFALNQ 90
L R L
Sbjct: 59 GPLSRVGLEP 68
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.3 bits (59), Expect = 2.3
Identities = 15/156 (9%), Positives = 49/156 (31%), Gaps = 7/156 (4%)
Query: 22 ILLISDNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
++L+ +++ GK++L+ + +G + + A++ + + + +W G+ +
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRC 140
+L ++V +T + + + + ++ I
Sbjct: 69 HSLAPMYYRG----AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI--ALSGNKAD 122
Query: 141 CKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
+ L + S + E
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE 158
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 28.0 bits (61), Expect = 2.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 19 IGNILLISDNSSGKTTLIAKLQGI 42
IG +L+ D +GK+T + L +
Sbjct: 28 IGGVLVFGDRGTGKSTAVRALAAL 51
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 27.8 bits (62), Expect = 2.4
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
L DG + L+ + GKTT + + G++ P +G
Sbjct: 27 LTIKDGEFLV---LLGPSGCGKTTTLRMIAGLEEPTEG 61
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 27.3 bits (59), Expect = 2.5
Identities = 16/124 (12%), Positives = 30/124 (24%), Gaps = 6/124 (4%)
Query: 22 ILLISDNSSGKTTLIAKLQ------GIDSPEKGLALEYAYINVSDEYREDHTRLGVWILD 75
I+L +S+GK+ ++ LQ + L S E + G +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
Query: 76 GEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDY 135
E +++ + E D +
Sbjct: 66 PEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAV 125
Query: 136 QAGR 139
GR
Sbjct: 126 AEGR 129
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 27.6 bits (61), Expect = 2.6
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPE 46
G ++ L+ N +GK+TL+A++ G+ S +
Sbjct: 20 GEVRAGEILH---LVGPNGAGKSTLLARMAGMTSGK 52
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 27.4 bits (60), Expect = 2.6
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 22 ILLISDNSSGKTTLIAKLQ 40
+LL+ SGK+T++ +++
Sbjct: 9 LLLLGAGESGKSTIVKQMR 27
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.2 bits (59), Expect = 2.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 22 ILLISDNSSGKTTLIAKLQG 41
ILL+ +++GKTTL+ +L
Sbjct: 19 ILLLGLDNAGKTTLLKQLAS 38
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.0 bits (58), Expect = 2.8
Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 4/119 (3%)
Query: 21 NILLISDNSSGKTTLIAKLQG----IDSPEKGLALEYAYINVSDEYREDHTRLGVWILDG 76
+++ ++GK++L+ L G I + G + ++ + H + +
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
Query: 77 EPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDY 135
+ QE V+ +V TT + + + +
Sbjct: 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 27.2 bits (60), Expect = 3.0
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLG 70
L DG + L+ + GKTT + + G++ P +G + V+D +
Sbjct: 24 LEVKDGEFMI---LLGPSGCGKTTTLRMIAGLEEPSRG-QIYIGDKLVADPEKGIFVPPK 79
Query: 71 VWILDGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDEL 114
+ L + + + + V + E+
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 3.3
Identities = 17/120 (14%), Positives = 39/120 (32%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
++L+ D +GKTT + + + +K +A ++ +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 65
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141
LR + ++ V S T N+ + + V ++ L D + +
Sbjct: 66 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK 125
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722
{Novosphingobium aromaticivorans [TaxId: 48935]}
Length = 153
Score = 26.6 bits (58), Expect = 3.5
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 14/77 (18%)
Query: 18 VIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVW----- 72
+G + + + + + S G A +R W
Sbjct: 83 FLGPATVTVEGDTATARCHSVVFRCVSGTFGSHRVSANR---WTFRRTP---AGWRAVRR 136
Query: 73 ---ILDGEPAHSNLLRF 86
+LDG A LL+F
Sbjct: 137 ENALLDGSAAARALLQF 153
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 27.1 bits (58), Expect = 3.7
Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 5/143 (3%)
Query: 16 GSVIGNILLIS-DNSSGKTTLIAKL-QGIDSPEKGLALEYAYINVSDEYREDHTRLGVWI 73
G G+I + + +GKT + L P E + + E RL
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 78
Query: 74 LDGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAH 133
+ N + + + +A ++ D +L +
Sbjct: 79 ERYGL---SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 135
Query: 134 DYQAGRCCKLLTFARLRAHLIEL 156
+ + + AR L+ L
Sbjct: 136 SGRGELSARQMHLARFLRMLLRL 158
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Pseudomonas fluorescens [TaxId: 294]}
Length = 203
Score = 26.8 bits (59), Expect = 4.5
Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 16/154 (10%)
Query: 155 ELLSFYLFYSSV---SVIPGEGILERNLGVDIVVVV--TKTDYMSTLEKDFYYKEEHFDF 209
++ + FY + I G+ + + E+ + +F
Sbjct: 17 RMVYWANFYEKLFNFREARYFDIKGEYTGLTSKAMSAPDGMIRIPLNEESSKGAGQIEEF 76
Query: 210 VQQYIRKFCLKFGAGLFYTSAKEDKNCDLLYKYLAHRLYGF---PFRTSALIVEKDAVLI 266
+ Q+ G G+ + + D + + L F P T ++E
Sbjct: 77 LMQF-------NGEGIQHVAFLTD-DLVKTWDALKKIGMRFMTAPPDTYYEMLEGRLPDH 128
Query: 267 PSGWDNMKKIGILYENMQSIKPDDYYTDVITKPI 300
D ++ GIL + + ++ +
Sbjct: 129 GEPVDQLQARGILLDGSSVEGDKRLLLQIFSETL 162
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAH 80
NI L+ +GK+T+ +L + L +E+ + E R V+ L+GE
Sbjct: 4 NIFLVGPMGAGKSTIGRQL------AQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGF 57
Query: 81 SNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNI 130
+ +N+ T +V+ + + V+ ++
Sbjct: 58 RDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEK 107
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 26.6 bits (57), Expect = 4.7
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 22 ILLISDNSSGKTTLIAKL 39
+ L+ SGKTT + +
Sbjct: 5 LTLVGLQYSGKTTFVNVI 22
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 26.5 bits (57), Expect = 4.7
Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Query: 21 NILLISDNSSGKTTLIAKLQGI------DSPEKGLALEYAYINVSDEYREDHTRLGVWIL 74
NI ++ GKTTL L G+ + +G+ ++ + + + R +
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 66
Query: 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHN 116
H ++ P ++ + + +
Sbjct: 67 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILV 108
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.7 bits (57), Expect = 4.7
Identities = 16/123 (13%), Positives = 29/123 (23%), Gaps = 2/123 (1%)
Query: 14 NDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWI 73
N G L+ +GKT + KL + + + YIN +
Sbjct: 38 NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT--ARFVYINGFIYRNFTAIIGEIAR 95
Query: 74 LDGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAH 133
P L L + + M + L +
Sbjct: 96 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLG 155
Query: 134 DYQ 136
++
Sbjct: 156 AFR 158
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 4.8
Identities = 10/146 (6%), Positives = 36/146 (24%), Gaps = 3/146 (2%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
+ + GK+ L+ + + + ++ + + G+
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI 64
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141
E + + ++ N ++ + I +
Sbjct: 65 QREGHMRWGEGFVLVYDI--TDRGSFEEVLPL-KNILDEIKKPKNVTLILVGNKADLDHS 121
Query: 142 KLLTFARLRAHLIELLSFYLFYSSVS 167
+ ++ EL + S+ +
Sbjct: 122 RQVSTEEGEKLATELACAFYECSACT 147
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli
[TaxId: 562]}
Length = 177
Score = 26.5 bits (58), Expect = 4.9
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 226 FYTSAKEDKNCDLLYKYLAHRLYGFPFR 253
T+AK D+ L FPFR
Sbjct: 154 ITTTAKSDEEGRALLAAF-----DFPFR 176
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 26.9 bits (58), Expect = 4.9
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 215 RKFCLKFGAGLFYT 228
R ++GA ++
Sbjct: 17 RTLAFEWGADFAFS 30
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.5 bits (57), Expect = 5.2
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 196 LEKDFYYKEEHFDFVQQYIRKFCLKFGAGLFYTSAKE-DKNCDLLYKYLAHRLY 248
L + + ++ K+ TSAK+ N D + L +
Sbjct: 114 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.6 bits (58), Expect = 5.4
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 8/48 (16%)
Query: 5 YYDVFVLR-----FNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK 47
+ F L G ++ +GKT + + G P+
Sbjct: 10 KWKNFSLDNLSLKVESGEYFV---ILGPTGAGKTLFLELIAGFHVPDS 54
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 26.7 bits (59), Expect = 5.4
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK 47
L+ G + L+ + SGK+T+ + + ++
Sbjct: 36 LKIPAGKTVA---LVGRSGSGKSTIASLITRFYDIDE 69
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 26.2 bits (56), Expect = 5.4
Identities = 18/155 (11%), Positives = 40/155 (25%), Gaps = 6/155 (3%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
+LL+ GK+ L G++ + E A D + + D
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEA---EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDYQAGRCC 141
+++ V+ + EL + D I +
Sbjct: 61 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 120
Query: 142 KLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
+ ++ RA + ++ S +
Sbjct: 121 REVSVDEGRACAVVFDCKFIE---TSAALHHNVQA 152
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 26.3 bits (56), Expect = 5.6
Identities = 18/159 (11%), Positives = 41/159 (25%), Gaps = 5/159 (3%)
Query: 21 NILLISDNSSGKTTLIAKLQG-----IDSPEKGLALEYAYINVSDEYREDHTRLGVWILD 75
+ +++GK++ + L S G V+D R +
Sbjct: 18 EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEV 77
Query: 76 GEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHDY 135
E R ++ LVV M + D D ++ +
Sbjct: 78 PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA 137
Query: 136 QAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGI 174
+ + + + + S + +G+
Sbjct: 138 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 176
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 26.7 bits (58), Expect = 6.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 21 NILLISDNSSGKTTLIAKLQGIDSPEKGLA 50
N+ + + SGK++ I L+GI + E+G A
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAA 87
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 26.1 bits (56), Expect = 6.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 22 ILLISDNSSGKTTLIAKLQG 41
I++ +SGKT+L+ L
Sbjct: 6 IIIAGPQNSGKTSLLTLLTT 25
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 26.2 bits (56), Expect = 6.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 21 NILLISDNSSGKTTLIAKL 39
+ ++ SSGK+ L+ KL
Sbjct: 9 TVAILGGESSGKSVLVNKL 27
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.4 bits (58), Expect = 6.8
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK 47
L G VIG ++ + SGK+TL +Q PE
Sbjct: 24 LSIKQGEVIG---IVGRSGSGKSTLTKLIQRFYIPEN 57
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 26.1 bits (57), Expect = 7.2
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 24 LISDNSSGKTTLIAKLQGIDSPEKG 48
L+ +GK+ + + GI P++G
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRG 53
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.1 bits (57), Expect = 7.6
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSP 45
L ++G + + + GK+TL+ + G+++
Sbjct: 21 LDIHEGEFVV---FVGPSGCGKSTLLRMIAGLETI 52
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 26.0 bits (57), Expect = 7.9
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEKG 48
L G + G +I + +GK+TLI + ++ P +G
Sbjct: 26 LHVPAGQIYG---VIGASGAGKSTLIRCVNLLERPTEG 60
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 25.9 bits (55), Expect = 7.9
Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 1/96 (1%)
Query: 22 ILLISDNSSGKTTLIAKLQGIDSPEKGLALEYAYINVSDEYREDHTRLGVWILDGEPAHS 81
++LI + GK+TL G+ D + + +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL-LDMWENK 64
Query: 82 NLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNW 117
+ + ++V S+T +
Sbjct: 65 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELR 100
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 25.8 bits (55), Expect = 9.2
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 22 ILLISDNSSGKTTLIAKL 39
++++ D+ GKT+L+ +
Sbjct: 5 VIILGDSGVGKTSLMHRY 22
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 25.7 bits (55), Expect = 9.3
Identities = 20/162 (12%), Positives = 47/162 (29%), Gaps = 4/162 (2%)
Query: 19 IGNILLISDNSSGKTTLIAKLQG----IDSPEKGLALEYAYINVSDEYREDHTRLGVWIL 74
+ ++ L+ S GK+TL++ + I + + +D+ R ++
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60
Query: 75 DGEPAHSNLLRFALNQETLPHTMVMLVVSMTTPWNIIDELHNWASVLQDHIDSLNIGAHD 134
+G L L +V ++ + + + +
Sbjct: 61 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ 120
Query: 135 YQAGRCCKLLTFARLRAHLIELLSFYLFYSSVSVIPGEGILE 176
+ A E L+ +S + EG+ E
Sbjct: 121 IIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRE 162
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 25.6 bits (56), Expect = 9.8
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 11 LRFNDGSVIGNILLISDNSSGKTTLIAKLQGIDSPEK 47
G V L+ N SGK+T+ A LQ + P
Sbjct: 35 FTLRPGEVTA---LVGPNGSGKSTVAALLQNLYQPTG 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,542,450
Number of extensions: 73169
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 104
Length of query: 415
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,199,356
Effective search space: 392189412
Effective search space used: 392189412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)