BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13979
(78 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4QNF3|ROMO1_XENTR Reactive oxygen species modulator 1 OS=Xenopus tropicalis
GN=romo1 PE=3 SV=1
Length = 79
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Query: 1 MPVPVGAY-AGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVM 59
MPV VG Y QPSCFDR+K+GFM+GF+VGMA G LFG F+ LR+G+RG EL+ VGK M
Sbjct: 1 MPVAVGPYGQSQPSCFDRVKMGFMMGFAVGMAAGALFGTFSCLRFGMRGRELMGGVGKTM 60
Query: 60 VQGGGSFGTFMAIGAGIRC 78
+Q GG+FGTFMAIG GIRC
Sbjct: 61 MQSGGTFGTFMAIGMGIRC 79
>sp|Q6NYD1|ROMO1_DANRE Reactive oxygen species modulator 1 OS=Danio rerio GN=romo1 PE=3
SV=1
Length = 80
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 1 MPVPVGAY--AGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKV 58
MPV VG+Y QPSCFDR+K+GFM+GF+VGMA G +FG F+ LR G+RG EL+ VGK
Sbjct: 1 MPVSVGSYGQQAQPSCFDRVKMGFMMGFAVGMAAGAMFGTFSCLRIGMRGRELMGGVGKT 60
Query: 59 MVQGGGSFGTFMAIGAGIRC 78
M+Q GG+FGTFMAIG GIRC
Sbjct: 61 MMQSGGTFGTFMAIGMGIRC 80
>sp|Q4V7T9|ROMO1_XENLA Reactive oxygen species modulator 1 OS=Xenopus laevis GN=romo1
PE=3 SV=1
Length = 79
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Query: 1 MPVPVGAY-AGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVM 59
MPV VG Y QP+CFDR+K+GFM+GF+VGMA G LFG F+ LR+G+RG EL+ VGK M
Sbjct: 1 MPVAVGPYGQSQPNCFDRVKMGFMMGFAVGMAAGALFGTFSCLRFGMRGRELMGGVGKTM 60
Query: 60 VQGGGSFGTFMAIGAGIRC 78
+Q GG+FGTFMAIG GIRC
Sbjct: 61 MQSGGTFGTFMAIGMGIRC 79
>sp|P60603|ROMO1_MOUSE Reactive oxygen species modulator 1 OS=Mus musculus GN=Romo1 PE=2
SV=1
Length = 79
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 1 MPVPVGAY-AGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVM 59
MPV VG Y QPSCFDR+K+GF++G +VGMA G LFG F+ LR G+RG EL+ +GK M
Sbjct: 1 MPVAVGPYGQSQPSCFDRVKMGFVMGCAVGMAAGALFGTFSCLRIGMRGRELMGGIGKTM 60
Query: 60 VQGGGSFGTFMAIGAGIRC 78
+Q GG+FGTFMAIG GIRC
Sbjct: 61 MQSGGTFGTFMAIGMGIRC 79
>sp|P60602|ROMO1_HUMAN Reactive oxygen species modulator 1 OS=Homo sapiens GN=ROMO1 PE=1
SV=1
Length = 79
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 1 MPVPVGAY-AGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVM 59
MPV VG Y QPSCFDR+K+GF++G +VGMA G LFG F+ LR G+RG EL+ +GK M
Sbjct: 1 MPVAVGPYGQSQPSCFDRVKMGFVMGCAVGMAAGALFGTFSCLRIGMRGRELMGGIGKTM 60
Query: 60 VQGGGSFGTFMAIGAGIRC 78
+Q GG+FGTFMAIG GIRC
Sbjct: 61 MQSGGTFGTFMAIGMGIRC 79
>sp|Q3SZV8|ROMO1_BOVIN Reactive oxygen species modulator 1 OS=Bos taurus GN=ROMO1 PE=3
SV=1
Length = 79
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 1 MPVPVGAY-AGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVM 59
MPV VG Y QPSCFDR+K+GF++G +VGMA G LFG F+ LR G+RG EL+ +GK M
Sbjct: 1 MPVAVGPYGQSQPSCFDRVKMGFVMGCAVGMAAGALFGTFSCLRIGMRGRELMGGIGKTM 60
Query: 60 VQGGGSFGTFMAIGAGIRC 78
+Q GG+FGTFMAIG GIRC
Sbjct: 61 MQSGGTFGTFMAIGMGIRC 79
>sp|A1XQR6|ROMO1_PIG Reactive oxygen species modulator 1 OS=Sus scrofa GN=ROMO1 PE=3
SV=1
Length = 79
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 1 MPVPVGAY-AGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVM 59
MPV VG Y QPSCFDR+K+GF++G +VGMA G LFG F+ LR G+RG EL+ +GK M
Sbjct: 1 MPVAVGPYGQSQPSCFDRVKMGFVMGCAVGMAAGALFGPFSCLRIGMRGRELMGGIGKTM 60
Query: 60 VQGGGSFGTFMAIGAGIRC 78
+Q GG+FG FMAIG GIRC
Sbjct: 61 MQSGGTFGPFMAIGMGIRC 79
>sp|Q02889|MGR2_YEAST Protein MGR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MGR2 PE=1 SV=1
Length = 113
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 2 PVPVGAYAGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQ 61
P+P QPS +D+ K+G M+G +VG+ TG LFGGF G +++ +GK +
Sbjct: 3 PLPQNYAQQQPSNWDKFKMGLMMGTTVGVCTGILFGGFAIATQGPGPDGVVRTLGKYIAG 62
Query: 62 GGGSFGTFMAIGAGIRC 78
G+FG FM+IG+ IR
Sbjct: 63 SAGTFGLFMSIGSIIRS 79
>sp|P79082|MGR2_SCHPO Protein mgr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=mgr2 PE=2 SV=1
Length = 120
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 11 QPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFM 70
QPS D++K+G ++G + G+ G LFGG LRYG L+ +G+ M+ +FG FM
Sbjct: 5 QPSTVDKLKMGAIMGSAAGLGIGFLFGGVAVLRYGPGPRGFLRTLGQYMLTSAATFGFFM 64
Query: 71 AIGAGIR 77
+IG+ IR
Sbjct: 65 SIGSVIR 71
>sp|Q54M86|ROMO1_DICDI Reactive oxygen species modulator 1 homolog OS=Dictyostelium
discoideum GN=romo1 PE=3 SV=1
Length = 128
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 13 SCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAI 72
C +K+GF++G VG G L A L+K +G ++ GG FG FM I
Sbjct: 21 QCIQSIKMGFLMGAGVGATFGSCIVLIMFAAKKLPRAILMKTLGSSAMKMGGMFGCFMGI 80
Query: 73 GAGIRC 78
G +RC
Sbjct: 81 GGALRC 86
>sp|B0SQ10|PUR9_LEPBP Bifunctional purine biosynthesis protein PurH OS=Leptospira biflexa
serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)
GN=purH PE=3 SV=1
Length = 513
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 5 VGAYAGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVG-KVMVQGG 63
+G AGQ S D +++G M VG++ G + G +A G + + VG K ++Q G
Sbjct: 425 LGIGAGQMSRVDSVELGAMKAQKVGLSVVGSYVGSDAFFPFRDGIDAIAKVGAKAIIQPG 484
Query: 64 GS 65
GS
Sbjct: 485 GS 486
>sp|B0SGW3|PUR9_LEPBA Bifunctional purine biosynthesis protein PurH OS=Leptospira biflexa
serovar Patoc (strain Patoc 1 / Ames) GN=purH PE=3 SV=1
Length = 513
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 5 VGAYAGQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVG-KVMVQGG 63
+G AGQ S D +++G M VG++ G + G +A G + + VG K ++Q G
Sbjct: 425 LGIGAGQMSRVDSVELGAMKAQKVGLSVVGSYVGSDAFFPFRDGIDAIAKVGAKAIIQPG 484
Query: 64 GS 65
GS
Sbjct: 485 GS 486
>sp|P53254|UTP22_YEAST U3 small nucleolar RNA-associated protein 22 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP22 PE=1
SV=1
Length = 1237
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 25 GFSVGMATGGLFGGFNALRYGLRGAELLK----NVGKVMVQGGGSFGTFMAI 72
GFS M+ G GGF + + A LL N K+++ G S+ F +
Sbjct: 374 GFSSNMSHSGSLGGFGTFEFTILMAALLNGGGINSNKILLHGFSSYQLFKGV 425
>sp|Q949Q0|GPDA2_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic
OS=Arabidopsis thaliana GN=GLY1 PE=1 SV=1
Length = 420
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 50 ELLKNVGKVMVQGGGSFGTFMA 71
++L+ KV+V GGGSFGT MA
Sbjct: 82 DVLERTRKVVVLGGGSFGTAMA 103
>sp|Q8AVC3|SPX2_XENLA Sugar phosphate exchanger 2 OS=Xenopus laevis GN=slc37a2 PE=2 SV=1
Length = 499
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 18 MKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIG 73
+ F++ +++GM G+FG LRY L G ++ G F +FM G
Sbjct: 88 LDTAFLVSYAIGMFFSGIFGERLPLRYYLSGGMIIS----------GIFTSFMGFG 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.148 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,210,439
Number of Sequences: 539616
Number of extensions: 1232053
Number of successful extensions: 5050
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5026
Number of HSP's gapped (non-prelim): 22
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)