Query psy13979
Match_columns 78
No_of_seqs 101 out of 111
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 16:28:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10247 Romo1: Reactive mitoc 100.0 4.8E-38 1E-42 198.3 5.9 67 12-78 1-67 (67)
2 KOG4096|consensus 100.0 3.8E-38 8.3E-43 202.6 4.2 69 10-78 3-71 (75)
3 PF02466 Tim17: Tim17/Tim22/Ti 97.0 0.0013 2.9E-08 43.0 4.2 66 13-78 1-73 (128)
4 TIGR00980 3a0801so1tim17 mitoc 93.8 0.095 2.1E-06 38.0 3.8 69 10-78 5-76 (170)
5 TIGR00983 3a0801s02tim23 mitoc 92.1 0.27 5.9E-06 34.7 4.0 63 10-72 26-95 (149)
6 PTZ00236 mitochondrial import 91.1 0.53 1.1E-05 34.1 4.7 69 10-78 7-78 (164)
7 KOG1652|consensus 75.3 1.4 3.1E-05 32.7 1.0 32 31-72 92-123 (183)
8 PF12732 YtxH: YtxH-like prote 74.1 2.9 6.3E-05 25.5 2.1 22 24-45 3-24 (74)
9 KOG3225|consensus 62.8 5.1 0.00011 29.5 1.6 64 10-74 38-108 (168)
10 PRK09430 djlA Dna-J like membr 53.8 13 0.00027 28.1 2.5 26 15-41 4-29 (267)
11 TIGR00980 3a0801so1tim17 mitoc 50.0 20 0.00044 26.0 3.0 16 57-72 108-123 (170)
12 PF13436 Gly-zipper_OmpA: Glyc 48.3 16 0.00034 24.5 2.1 23 16-38 50-72 (118)
13 PRK09430 djlA Dna-J like membr 47.5 17 0.00038 27.3 2.4 23 19-41 11-33 (267)
14 PF13488 Gly-zipper_Omp: Glyci 46.6 25 0.00054 20.3 2.5 19 20-38 22-40 (46)
15 COG4980 GvpP Gas vesicle prote 44.9 22 0.00048 24.5 2.4 24 22-45 7-30 (115)
16 TIGR03789 pdsO proteobacterial 43.9 20 0.00043 27.1 2.2 23 19-41 48-70 (239)
17 PF06897 DUF1269: Protein of u 43.9 35 0.00075 22.5 3.2 34 24-60 20-53 (102)
18 TIGR02865 spore_II_E stage II 39.4 23 0.00049 30.5 2.1 18 20-37 193-210 (764)
19 COG4980 GvpP Gas vesicle prote 34.3 36 0.00077 23.5 2.1 21 26-46 7-27 (115)
20 PF11891 DUF3411: Domain of un 31.0 54 0.0012 24.1 2.7 51 27-77 118-172 (180)
21 COG0600 TauC ABC-type nitrate/ 27.0 79 0.0017 23.9 3.1 35 14-48 66-100 (258)
22 PF06295 DUF1043: Protein of u 26.3 64 0.0014 21.8 2.3 13 24-36 4-16 (128)
23 PF04286 DUF445: Protein of un 24.9 67 0.0014 23.5 2.3 19 23-41 347-365 (367)
24 PRK10510 putative outer membra 23.5 60 0.0013 23.8 1.8 17 21-37 38-54 (219)
25 PF00957 Synaptobrevin: Synapt 22.2 1.4E+02 0.003 18.2 3.1 25 12-36 60-84 (89)
26 PF11446 DUF2897: Protein of u 20.9 90 0.002 18.8 1.9 18 30-47 11-28 (55)
No 1
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=100.00 E-value=4.8e-38 Score=198.30 Aligned_cols=67 Identities=57% Similarity=1.110 Sum_probs=66.7
Q ss_pred CchHHHHHHhHHhhhhhhhhHHHHHHHHHHHHhcCCcchhhHhhhhHHhhcchhHHHHHhhcccccC
Q psy13979 12 PSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC 78 (78)
Q Consensus 12 ~sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~g~~~i~~~G~~~l~sg~tFG~FMsiGs~IRC 78 (78)
||||||+|||++||++||+++|+|||+|+++|||+||++++|++|||+++|++|||+||+|||+|||
T Consensus 1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc 67 (67)
T PF10247_consen 1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC 67 (67)
T ss_pred CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
No 2
>KOG4096|consensus
Probab=100.00 E-value=3.8e-38 Score=202.58 Aligned_cols=69 Identities=62% Similarity=1.194 Sum_probs=68.5
Q ss_pred CCCchHHHHHHhHHhhhhhhhhHHHHHHHHHHHHhcCCcchhhHhhhhHHhhcchhHHHHHhhcccccC
Q psy13979 10 GQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC 78 (78)
Q Consensus 10 ~~~sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~g~~~i~~~G~~~l~sg~tFG~FMsiGs~IRC 78 (78)
+|||||||+|||++||++||+++|+|||+|+++|+|+||++++|++||||++|++|||+||+|||+|||
T Consensus 3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~ 71 (75)
T KOG4096|consen 3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRC 71 (75)
T ss_pred CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhheec
Confidence 789999999999999999999999999999999999999999999999999999999999999999999
No 3
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=96.98 E-value=0.0013 Score=42.98 Aligned_cols=66 Identities=32% Similarity=0.550 Sum_probs=49.0
Q ss_pred chHHHHHHhHHhhhhhhhhHHHHHHHHHHHHhcCC-------cchhhHhhhhHHhhcchhHHHHHhhcccccC
Q psy13979 13 SCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLR-------GAELLKNVGKVMVQGGGSFGTFMAIGAGIRC 78 (78)
Q Consensus 13 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~-------g~~~i~~~G~~~l~sg~tFG~FMsiGs~IRC 78 (78)
||+||+-.....|..+|..+|.+.+.+++.....+ -+..++.+++.....+.+||.|-.+=+.++|
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~ 73 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIEC 73 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999988865332222 2455566666666689999998887777665
No 4
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=93.78 E-value=0.095 Score=37.99 Aligned_cols=69 Identities=20% Similarity=0.374 Sum_probs=47.0
Q ss_pred CCCchHHHHHHhHHhhhhhhhhHHHHHHHHHHHHhcCC---cchhhHhhhhHHhhcchhHHHHHhhcccccC
Q psy13979 10 GQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLR---GAELLKNVGKVMVQGGGSFGTFMAIGAGIRC 78 (78)
Q Consensus 10 ~~~sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~---g~~~i~~~G~~~l~sg~tFG~FMsiGs~IRC 78 (78)
..++|-.|+..-+-.+...|.+.|.+++.+..+|.-.. -++.++.+....-..+.+|+.+-.+=+.+.|
T Consensus 5 ~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec 76 (170)
T TIGR00980 5 TREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDC 76 (170)
T ss_pred ccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 34568777777777777777777777777777776533 2344555566666678888887776665554
No 5
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=92.07 E-value=0.27 Score=34.67 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=36.5
Q ss_pred CCCchHHHHHHhHHhhhhhhhhHHHHHHHHHHHHh-------cCCcchhhHhhhhHHhhcchhHHHHHhh
Q psy13979 10 GQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRY-------GLRGAELLKNVGKVMVQGGGSFGTFMAI 72 (78)
Q Consensus 10 ~~~sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~-------g~~g~~~i~~~G~~~l~sg~tFG~FMsi 72 (78)
++-++.|++--..-+....|.+.|.++|.+..+|. +.|-+..++++++.-...|.+||.+=.+
T Consensus 26 ~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~l 95 (149)
T TIGR00983 26 PSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALV 95 (149)
T ss_pred CCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 33456665444444444444444455555555543 2345667788888888888888765443
No 6
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=91.06 E-value=0.53 Score=34.05 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=39.4
Q ss_pred CCCchHHHHHHhHHhhhhhhhhHHHHHHHHHHHHhcC---CcchhhHhhhhHHhhcchhHHHHHhhcccccC
Q psy13979 10 GQPSCFDRMKVGFMIGFSVGMATGGLFGGFNALRYGL---RGAELLKNVGKVMVQGGGSFGTFMAIGAGIRC 78 (78)
Q Consensus 10 ~~~sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~---~g~~~i~~~G~~~l~sg~tFG~FMsiGs~IRC 78 (78)
....|-+||.--+--+...|.+.|.+++.+.++|.=+ +-++.++.+.+..-..+.+|+.+-.+=+.+.|
T Consensus 7 ~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec 78 (164)
T PTZ00236 7 SREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDC 78 (164)
T ss_pred CcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3445655554444444444444444444455555443 33455677777777888888888776666555
No 7
>KOG1652|consensus
Probab=75.30 E-value=1.4 Score=32.67 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHhcCCcchhhHhhhhHHhhcchhHHHHHhh
Q psy13979 31 ATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAI 72 (78)
Q Consensus 31 ~~G~l~G~~~~~r~g~~g~~~i~~~G~~~l~sg~tFG~FMsi 72 (78)
+.|++.|+.-++|.+ -+.|++|+.+||+|+++
T Consensus 92 vsGa~TGg~La~r~g----------~~a~~~sa~~~g~~lam 123 (183)
T KOG1652|consen 92 VSGAATGGLLAARGG----------PKAMLTSAITGGLLLAM 123 (183)
T ss_pred HHHhhccceeecccc----------HHHHHHHHHHHHHHHHH
Confidence 345556666666655 56899999999999875
No 8
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=74.13 E-value=2.9 Score=25.48 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=10.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHhc
Q psy13979 24 IGFSVGMATGGLFGGFNALRYG 45 (78)
Q Consensus 24 MG~~VG~~~G~l~G~~~~~r~g 45 (78)
.|..+|.++|++.|.+.+=+.|
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~sG 24 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKSG 24 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCCc
Confidence 3444455555555544443333
No 9
>KOG3225|consensus
Probab=62.78 E-value=5.1 Score=29.52 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=47.3
Q ss_pred CCCchHHHHHHhHHhhhhhhhhHHHHHHHHH---H----HHhcCCcchhhHhhhhHHhhcchhHHHHHhhcc
Q psy13979 10 GQPSCFDRMKVGFMIGFSVGMATGGLFGGFN---A----LRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGA 74 (78)
Q Consensus 10 ~~~sc~~kikmG~~MG~~VG~~~G~l~G~~~---~----~r~g~~g~~~i~~~G~~~l~sg~tFG~FMsiGs 74 (78)
..+||--|--+.-.+|..+|.++|..++++. - -|.=.| +.+.+..+|-+-+++=+|+..=.+=+
T Consensus 38 ~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar-~q~~kdMg~r~~s~~knF~~iGlvfs 108 (168)
T KOG3225|consen 38 EENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPAR-KQVAKDMGQRSGSYAKNFAIIGLVFS 108 (168)
T ss_pred HhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhH-HHHHHHHHhhhcchhhhhhhhhhheh
Confidence 3579999999999999999999999988877 1 221111 34467788888899989987544433
No 10
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=53.85 E-value=13 Score=28.10 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=13.2
Q ss_pred HHHHHHhHHhhhhhhhhHHHHHHHHHH
Q psy13979 15 FDRMKVGFMIGFSVGMATGGLFGGFNA 41 (78)
Q Consensus 15 ~~kikmG~~MG~~VG~~~G~l~G~~~~ 41 (78)
|-|| .|+..|.++|+.+|+|+|.+-.
T Consensus 4 ~gki-~g~~~G~~~~g~~Ga~~G~~~G 29 (267)
T PRK09430 4 WGKI-LGFAFGFLFGGFFGALLGLLIG 29 (267)
T ss_pred HHHH-HHHHHHHHHhhHHHHHHHHHHH
Confidence 5443 3455555555555555554443
No 11
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=50.05 E-value=20 Score=25.95 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=11.9
Q ss_pred hHHhhcchhHHHHHhh
Q psy13979 57 KVMVQGGGSFGTFMAI 72 (78)
Q Consensus 57 ~~~l~sg~tFG~FMsi 72 (78)
|.++.+++.++.|+++
T Consensus 108 ~a~~~~aa~gg~~la~ 123 (170)
T TIGR00980 108 RAMRGSAILGACILAV 123 (170)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777777764
No 12
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=48.35 E-value=16 Score=24.54 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=17.0
Q ss_pred HHHHHhHHhhhhhhhhHHHHHHH
Q psy13979 16 DRMKVGFMIGFSVGMATGGLFGG 38 (78)
Q Consensus 16 ~kikmG~~MG~~VG~~~G~l~G~ 38 (78)
++..-|...|+++|.++|.++|.
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~ 72 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGG 72 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCC
Confidence 55667777787777777777776
No 13
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=47.52 E-value=17 Score=27.33 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.9
Q ss_pred HHhHHhhhhhhhhHHHHHHHHHH
Q psy13979 19 KVGFMIGFSVGMATGGLFGGFNA 41 (78)
Q Consensus 19 kmG~~MG~~VG~~~G~l~G~~~~ 41 (78)
-.|++.|+-+|.++|+++|.+.=
T Consensus 11 ~~G~~~~g~~Ga~~G~~~Gh~~d 33 (267)
T PRK09430 11 AFGFLFGGFFGALLGLLIGHMFD 33 (267)
T ss_pred HHHHHHhhHHHHHHHHHHHhHHh
Confidence 47999999999999999998764
No 14
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=46.64 E-value=25 Score=20.32 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=9.9
Q ss_pred HhHHhhhhhhhhHHHHHHH
Q psy13979 20 VGFMIGFSVGMATGGLFGG 38 (78)
Q Consensus 20 mG~~MG~~VG~~~G~l~G~ 38 (78)
.|...|+.||..+|..+|-
T Consensus 22 ~ga~iGa~vGa~~G~~ig~ 40 (46)
T PF13488_consen 22 KGAAIGAAVGAAVGAAIGN 40 (46)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3455555555555555543
No 15
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=44.90 E-value=22 Score=24.49 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=12.6
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhc
Q psy13979 22 FMIGFSVGMATGGLFGGFNALRYG 45 (78)
Q Consensus 22 ~~MG~~VG~~~G~l~G~~~~~r~g 45 (78)
|+.|..+|+++|++.+.+.|=+.|
T Consensus 7 ~l~G~liGgiiGa~aaLL~AP~sG 30 (115)
T COG4980 7 FLFGILIGGIIGAAAALLFAPKSG 30 (115)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccc
Confidence 455555555555555555444433
No 16
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=43.89 E-value=20 Score=27.11 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=12.6
Q ss_pred HHhHHhhhhhhhhHHHHHHHHHH
Q psy13979 19 KVGFMIGFSVGMATGGLFGGFNA 41 (78)
Q Consensus 19 kmG~~MG~~VG~~~G~l~G~~~~ 41 (78)
..|+..|+.||+.+|++.|.+..
T Consensus 48 ~~ga~~g~~~gg~~G~~~G~~~G 70 (239)
T TIGR03789 48 GSGALLGALVGGPVGAIIGGITG 70 (239)
T ss_pred HHHHHHhhhhccHHHHHHHHHHH
Confidence 34555555555555655555543
No 17
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=43.89 E-value=35 Score=22.54 Aligned_cols=34 Identities=38% Similarity=0.789 Sum_probs=23.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCcchhhHhhhhHHh
Q psy13979 24 IGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMV 60 (78)
Q Consensus 24 MG~~VG~~~G~l~G~~~~~r~g~~g~~~i~~~G~~~l 60 (78)
.|.+||...|++.|.++ -+|++ +.+++.+++.+-
T Consensus 20 ~G~~~GA~~Gal~G~l~--d~gI~-d~~~~ev~~~L~ 53 (102)
T PF06897_consen 20 LGAAVGAAAGALAGALS--DYGID-DEFIKEVGEALK 53 (102)
T ss_pred HHHHHHHHHHHHHhHHh--hCCCC-HHHHHHHHhhcC
Confidence 56677888888888765 45654 567888876643
No 18
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=39.41 E-value=23 Score=30.54 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=13.1
Q ss_pred HhHHhhhhhhhhHHHHHH
Q psy13979 20 VGFMIGFSVGMATGGLFG 37 (78)
Q Consensus 20 mG~~MG~~VG~~~G~l~G 37 (78)
-|.-+|+++|.++|++.+
T Consensus 193 gG~~~Gaa~Gv~~Gli~~ 210 (764)
T TIGR02865 193 GGSGAGAAGGVVIGVILG 210 (764)
T ss_pred cCchHhHHHHHHHHHHHH
Confidence 366677777777777776
No 19
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=34.28 E-value=36 Score=23.48 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHHHHhcC
Q psy13979 26 FSVGMATGGLFGGFNALRYGL 46 (78)
Q Consensus 26 ~~VG~~~G~l~G~~~~~r~g~ 46 (78)
..+|..+|.+.|..+++-.-+
T Consensus 7 ~l~G~liGgiiGa~aaLL~AP 27 (115)
T COG4980 7 FLFGILIGGIIGAAAALLFAP 27 (115)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 345666666666666665544
No 20
>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.
Probab=31.01 E-value=54 Score=24.06 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=30.9
Q ss_pred hhhhhHHHHHHHHH----HHHhcCCcchhhHhhhhHHhhcchhHHHHHhhccccc
Q psy13979 27 SVGMATGGLFGGFN----ALRYGLRGAELLKNVGKVMVQGGGSFGTFMAIGAGIR 77 (78)
Q Consensus 27 ~VG~~~G~l~G~~~----~~r~g~~g~~~i~~~G~~~l~sg~tFG~FMsiGs~IR 77 (78)
+||.+.|++-.+.+ +.|....+..--..--..++.++.+.|.||++-+=+|
T Consensus 118 ~VG~~ag~vg~~lsn~L~~~rk~~~~~~e~~~~~ppv~~ta~~~g~fmGvSsNlR 172 (180)
T PF11891_consen 118 AVGFIAGLVGTGLSNALIAARKKVDPSFEPSVPVPPVLKTALGWGAFMGVSSNLR 172 (180)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHhhhHhHH
Confidence 46666666655444 4454433321122233468899999999999877555
No 21
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=26.98 E-value=79 Score=23.92 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=29.6
Q ss_pred hHHHHHHhHHhhhhhhhhHHHHHHHHHHHHhcCCc
Q psy13979 14 CFDRMKVGFMIGFSVGMATGGLFGGFNALRYGLRG 48 (78)
Q Consensus 14 c~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~g 48 (78)
-..++-.|+..|..+|...|++.|.+...+.-..|
T Consensus 66 Sl~rv~~Gf~la~~~gi~lgil~g~~~~~~~~l~P 100 (258)
T COG0600 66 SLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDP 100 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 45678899999999999999999999888766543
No 22
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.30 E-value=64 Score=21.76 Aligned_cols=13 Identities=46% Similarity=0.754 Sum_probs=6.1
Q ss_pred hhhhhhhhHHHHH
Q psy13979 24 IGFSVGMATGGLF 36 (78)
Q Consensus 24 MG~~VG~~~G~l~ 36 (78)
.|..||.++|++.
T Consensus 4 i~lvvG~iiG~~~ 16 (128)
T PF06295_consen 4 IGLVVGLIIGFLI 16 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 3444454554443
No 23
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=24.89 E-value=67 Score=23.49 Aligned_cols=19 Identities=21% Similarity=-0.032 Sum_probs=13.0
Q ss_pred HhhhhhhhhHHHHHHHHHH
Q psy13979 23 MIGFSVGMATGGLFGGFNA 41 (78)
Q Consensus 23 ~MG~~VG~~~G~l~G~~~~ 41 (78)
.-|+.||+.+|++...++-
T Consensus 347 inGallG~liG~~~~~i~~ 365 (367)
T PF04286_consen 347 INGALLGGLIGLLQYLILQ 365 (367)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4577777777777766543
No 24
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=23.49 E-value=60 Score=23.76 Aligned_cols=17 Identities=41% Similarity=0.479 Sum_probs=8.7
Q ss_pred hHHhhhhhhhhHHHHHH
Q psy13979 21 GFMIGFSVGMATGGLFG 37 (78)
Q Consensus 21 G~~MG~~VG~~~G~l~G 37 (78)
|...|+.+|.++|.+.|
T Consensus 38 ga~~Ga~~Ga~~G~~~g 54 (219)
T PRK10510 38 GAGIGSLVGAGIGALSS 54 (219)
T ss_pred hhHHHHHHHHHHHhhhc
Confidence 55555555555554443
No 25
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=22.21 E-value=1.4e+02 Score=18.24 Aligned_cols=25 Identities=12% Similarity=-0.018 Sum_probs=19.6
Q ss_pred CchHHHHHHhHHhhhhhhhhHHHHH
Q psy13979 12 PSCFDRMKVGFMIGFSVGMATGGLF 36 (78)
Q Consensus 12 ~sc~~kikmG~~MG~~VG~~~G~l~ 36 (78)
..||+++|+....+..|-..+-+++
T Consensus 60 ~~~~~~~k~~~i~~~iv~~~~~~i~ 84 (89)
T PF00957_consen 60 KMWWRNYKLYIIIIIIVIIIILIII 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHhhhhhhhhHHH
Confidence 4689999999998888777665554
No 26
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=20.87 E-value=90 Score=18.77 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHhcCC
Q psy13979 30 MATGGLFGGFNALRYGLR 47 (78)
Q Consensus 30 ~~~G~l~G~~~~~r~g~~ 47 (78)
.++|+|.|..+++||-+.
T Consensus 11 iVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 11 IVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHhHHHHHHHhcc
Confidence 578999999999999764
Done!