Query psy13979
Match_columns 78
No_of_seqs 101 out of 111
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 16:29:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ldt_A Outer membrane protein, 46.8 4 0.00014 27.3 -0.1 24 20-43 4-27 (169)
2 1q2f_A PNC27; P53 protein, MDM 20.9 29 0.00099 18.5 0.6 10 11-20 22-31 (32)
3 3pnl_B PTS-dependent dihydroxy 18.7 62 0.0021 22.5 2.1 26 13-40 64-89 (211)
4 3cr3_A PTS-dependent dihydroxy 18.6 63 0.0022 22.2 2.1 25 13-39 62-86 (192)
5 2kxa_A Haemagglutinin HA2 chai 17.3 87 0.003 16.4 2.0 19 27-45 2-20 (30)
6 3hd7_A Vesicle-associated memb 15.2 1.5E+02 0.0053 17.9 3.1 23 13-35 63-85 (91)
7 2woe_A ADP-ribosyl-[dinitrogen 10.1 2.2E+02 0.0076 19.7 3.0 26 10-36 7-32 (299)
8 2kog_A Vesicle-associated memb 9.5 2.3E+02 0.008 18.1 2.7 24 12-35 90-113 (119)
9 3heq_A Major prion protein; ce 8.2 36 0.0012 23.5 -1.7 26 13-38 18-43 (142)
10 1u7l_A Vacuolar ATP synthase s 8.2 1.3E+02 0.0044 23.3 1.2 11 40-50 315-325 (392)
No 1
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=46.78 E-value=4 Score=27.31 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=7.9
Q ss_pred HhHHhhhhhhhhHHHHHHHHHHHH
Q psy13979 20 VGFMIGFSVGMATGGLFGGFNALR 43 (78)
Q Consensus 20 mG~~MG~~VG~~~G~l~G~~~~~r 43 (78)
.|++.|++||++.|...|-|.--.
T Consensus 4 ~ga~~ga~~g~~~g~~ig~~~d~q 27 (169)
T 3ldt_A 4 SGTLIGAAAGGTVGLVASIYRDSK 27 (169)
T ss_dssp -------------CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999988775443
No 2
>1q2f_A PNC27; P53 protein, MDM-2 binding domain, penetratin, antitumor, antitumor protein; NMR {Synthetic} SCOP: j.69.1.1 PDB: 1q2i_A
Probab=20.86 E-value=29 Score=18.46 Aligned_cols=10 Identities=0% Similarity=0.152 Sum_probs=7.7
Q ss_pred CCchHHHHHH
Q psy13979 11 QPSCFDRMKV 20 (78)
Q Consensus 11 ~~sc~~kikm 20 (78)
.++||+|++-
T Consensus 22 ~~~~W~~~~~ 31 (32)
T 1q2f_A 22 RNQFWVKVQR 31 (32)
T ss_dssp HTTHHHHHHC
T ss_pred CCchHHHHhc
Confidence 4689999864
No 3
>3pnl_B PTS-dependent dihydroxyacetone kinase, ADP-bindin DHAL; structural genomics, montreal-kingston bacterial structural initiative, BSGI; HET: ADP; 2.20A {Escherichia coli} SCOP: a.208.1.0 PDB: 2btd_A*
Probab=18.70 E-value=62 Score=22.46 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=19.1
Q ss_pred chHHHHHHhHHhhhhhhhhHHHHHHHHH
Q psy13979 13 SCFDRMKVGFMIGFSVGMATGGLFGGFN 40 (78)
Q Consensus 13 sc~~kikmG~~MG~~VG~~~G~l~G~~~ 40 (78)
.-++++-+.++++ +|+..|.||+++-
T Consensus 64 ~~l~~~~~~~~~~--~gG~SG~L~~~~f 89 (211)
T 3pnl_B 64 FILKNTGMTLLSS--VGGASGPLFGTFF 89 (211)
T ss_dssp HHHHHHHHHHHTT--TCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 4577777777754 7888888888653
No 4
>3cr3_A PTS-dependent dihydroxyacetone kinase, ADP- binding subunit DHAL; transient protein-protein complex transferase complex PTS- dependent dihydroxyacetone kinase; HET: ADP; 2.10A {Lactococcus lactis subsp} SCOP: a.208.1.1
Probab=18.64 E-value=63 Score=22.17 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=18.8
Q ss_pred chHHHHHHhHHhhhhhhhhHHHHHHHH
Q psy13979 13 SCFDRMKVGFMIGFSVGMATGGLFGGF 39 (78)
Q Consensus 13 sc~~kikmG~~MG~~VG~~~G~l~G~~ 39 (78)
.-++++-++++++ +|+..|.||+++
T Consensus 62 ~~l~~~~~~~~~~--~gG~SG~L~~~~ 86 (192)
T 3cr3_A 62 EIFKKVAMTLMSK--VGGASGPLYGSA 86 (192)
T ss_dssp HHHHHHHHHHHHH--CCSTHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 4567777777765 788889888865
No 5
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=17.32 E-value=87 Score=16.38 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHHHHhc
Q psy13979 27 SVGMATGGLFGGFNALRYG 45 (78)
Q Consensus 27 ~VG~~~G~l~G~~~~~r~g 45 (78)
..|.+.|+|-|++..+..|
T Consensus 2 lFGAIAGfieggW~gmi~g 20 (30)
T 2kxa_A 2 LFGAIAGFIEGGWTGMIDG 20 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcCccccccc
Confidence 3577888888888877543
No 6
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=15.16 E-value=1.5e+02 Score=17.89 Aligned_cols=23 Identities=9% Similarity=0.168 Sum_probs=16.8
Q ss_pred chHHHHHHhHHhhhhhhhhHHHH
Q psy13979 13 SCFDRMKVGFMIGFSVGMATGGL 35 (78)
Q Consensus 13 sc~~kikmG~~MG~~VG~~~G~l 35 (78)
-||+.+|+=+.++..|-.++-++
T Consensus 63 mwwkn~K~~iii~~iv~~il~ii 85 (91)
T 3hd7_A 63 YWWKNLKMMIILGVICAIILIII 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999988887665544433
No 7
>2woe_A ADP-ribosyl-[dinitrogen reductase] glycohydrolase; dimanganese, nitrogen fixation, ADP-ribosylglycohydrolase, mono-ADP-ribosylhydrolase; HET: AR6 TLA; 1.90A {Rhodospirillum rubrum} PDB: 2woc_A 2wod_A*
Probab=10.09 E-value=2.2e+02 Score=19.73 Aligned_cols=26 Identities=38% Similarity=0.648 Sum_probs=19.5
Q ss_pred CCCchHHHHHHhHHhhhhhhhhHHHHH
Q psy13979 10 GQPSCFDRMKVGFMIGFSVGMATGGLF 36 (78)
Q Consensus 10 ~~~sc~~kikmG~~MG~~VG~~~G~l~ 36 (78)
..++-.||+ .|.++|.+||=++|.-+
T Consensus 7 ~~~~~~~r~-~G~llG~aiGDAlG~p~ 32 (299)
T 2woe_A 7 TGPSVHDRA-LGAFLGLAVGDALGATV 32 (299)
T ss_dssp -CCCHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHH-HHHHHHHHHHHhCCchh
Confidence 345667787 48899999999988754
No 8
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=9.52 E-value=2.3e+02 Score=18.06 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=16.8
Q ss_pred CchHHHHHHhHHhhhhhhhhHHHH
Q psy13979 12 PSCFDRMKVGFMIGFSVGMATGGL 35 (78)
Q Consensus 12 ~sc~~kikmG~~MG~~VG~~~G~l 35 (78)
..||+++|+=+.++..|-.++-+|
T Consensus 90 kmwwkn~K~~iii~~iv~iii~iI 113 (119)
T 2kog_A 90 KYWWKNLKMMIILGVICAIILIII 113 (119)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999888777665544433
No 9
>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2lsb_A 2k1d_A 2lej_A 2lv1_A 2lft_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 2kun_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2l1h_A 2l39_A ...
Probab=8.25 E-value=36 Score=23.46 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=5.0
Q ss_pred chHHHHHHhHHhhhhhhhhHHHHHHH
Q psy13979 13 SCFDRMKVGFMIGFSVGMATGGLFGG 38 (78)
Q Consensus 13 sc~~kikmG~~MG~~VG~~~G~l~G~ 38 (78)
.++..+..++.-|+.||++.|-..|.
T Consensus 18 tn~k~vAgaAaAGAVvGGlgGy~lG~ 43 (142)
T 3heq_A 18 TNMKHMAGAAAAGAVVGGLGGYMLGS 43 (142)
T ss_dssp -------------------CCCEECC
T ss_pred ccHHHHHHHHHhhhhhhccchHHHHh
Confidence 56777888888888888888876665
No 10
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=8.19 E-value=1.3e+02 Score=23.33 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=8.8
Q ss_pred HHHHhcCCcch
Q psy13979 40 NALRYGLRGAE 50 (78)
Q Consensus 40 ~~~r~g~~g~~ 50 (78)
+.+|||+|++-
T Consensus 315 SVLRYGLP~~F 325 (392)
T 1u7l_A 315 SVLRYGLPPHF 325 (392)
T ss_dssp HHHHHCSSCCE
T ss_pred hhhhcCCCCcc
Confidence 57899998874
Done!