Query psy13979
Match_columns 78
No_of_seqs 101 out of 111
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 16:29:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13979.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13979hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h41a2 d.92.2.2 (A:5-151) alp 24.3 17 0.0012 22.2 1.7 14 31-44 117-130 (147)
2 d1nvma1 a.5.7.1 (A:291-341) 4- 15.9 35 0.0026 18.4 1.7 20 39-58 10-29 (51)
3 d1l8na2 d.92.2.2 (A:4-142) alp 11.9 48 0.0035 19.6 1.6 15 30-44 107-121 (139)
4 d1pvda3 c.36.1.9 (A:361-556) P 11.7 46 0.0034 20.4 1.5 16 19-34 54-69 (196)
5 d1ffta_ f.24.1.1 (A:) Cytochro 11.7 2.4E+02 0.018 20.1 5.9 55 17-72 331-385 (501)
6 d1v54a_ f.24.1.1 (A:) Mitochon 11.1 2.3E+02 0.016 20.7 5.6 55 17-72 339-393 (514)
7 d1t5ja_ a.209.1.1 (A:) Hypothe 9.7 1.3E+02 0.0096 18.8 3.3 34 27-60 256-296 (301)
8 d1un8a1 a.208.1.1 (A:336-550) 9.3 97 0.0071 19.7 2.5 25 13-39 80-104 (215)
9 d2e74d2 f.23.12.1 (D:12-45) IS 7.9 1.2E+02 0.0086 14.9 1.9 13 24-36 13-25 (34)
10 d1v54j_ f.23.4.1 (J:) Mitochon 6.8 2E+02 0.015 15.3 3.6 27 15-41 27-53 (58)
No 1
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=24.28 E-value=17 Score=22.19 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHh
Q psy13979 31 ATGGLFGGFNALRY 44 (78)
Q Consensus 31 ~~G~l~G~~~~~r~ 44 (78)
--|+|||+|.-+|.
T Consensus 117 ~rG~LYG~f~lLr~ 130 (147)
T d1h41a2 117 DVGVLYGSFHLLRL 130 (147)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CcchHhHHHHHHHH
Confidence 36999999999984
No 2
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain {Pseudomonas sp. [TaxId: 306]}
Probab=15.86 E-value=35 Score=18.40 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=17.0
Q ss_pred HHHHHhcCCcchhhHhhhhH
Q psy13979 39 FNALRYGLRGAELLKNVGKV 58 (78)
Q Consensus 39 ~~~~r~g~~g~~~i~~~G~~ 58 (78)
-++-+||++++.++..+|+-
T Consensus 10 raa~~ygv~~rdil~ElGrR 29 (51)
T d1nvma1 10 IAAAKYNLKTLDILVELGHR 29 (51)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHhhc
Confidence 36789999999999999874
No 3
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.86 E-value=48 Score=19.61 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHh
Q psy13979 30 MATGGLFGGFNALRY 44 (78)
Q Consensus 30 ~~~G~l~G~~~~~r~ 44 (78)
--.|++||+|+-+|.
T Consensus 107 ~~~G~lYGvf~Ll~~ 121 (139)
T d1l8na2 107 TDAGVLYGVFHFLRL 121 (139)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHH
Confidence 457999999999873
No 4
>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.75 E-value=46 Score=20.43 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=10.7
Q ss_pred HHhHHhhhhhhhhHHH
Q psy13979 19 KVGFMIGFSVGMATGG 34 (78)
Q Consensus 19 kmG~~MG~~VG~~~G~ 34 (78)
-||..+++++|.+++.
T Consensus 54 ~mG~~l~~aiG~alaa 69 (196)
T d1pvda3 54 SIGFTTGATLGAAFAA 69 (196)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHH
Confidence 4677777777776653
No 5
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=11.71 E-value=2.4e+02 Score=20.14 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=33.1
Q ss_pred HHHHhHHhhhhhhhhHHHHHHHHHHHHhcCCcchhhHhhhhHHhhcchhHHHHHhh
Q psy13979 17 RMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAI 72 (78)
Q Consensus 17 kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~g~~~i~~~G~~~l~sg~tFG~FMsi 72 (78)
....++.....+|+.+|.+.+..+.=.+=-.---++-+. -+++..++.|++|-++
T Consensus 331 l~~l~fi~~F~~GG~tGi~~a~~~~d~~~H~T~~VvgHF-H~~~~~~~v~~~~~~~ 385 (501)
T d1ffta_ 331 LWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHF-HNVIIGGVVFGCFAGM 385 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHTTTTBHHHHHHH-HHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHhhccccccccc-eeeeecHHHHHHHHHH
Confidence 456777888888888888877665432211111112222 3577888888888654
No 6
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.12 E-value=2.3e+02 Score=20.71 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=32.6
Q ss_pred HHHHhHHhhhhhhhhHHHHHHHHHHHHhcCCcchhhHhhhhHHhhcchhHHHHHhh
Q psy13979 17 RMKVGFMIGFSVGMATGGLFGGFNALRYGLRGAELLKNVGKVMVQGGGSFGTFMAI 72 (78)
Q Consensus 17 kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~g~~~i~~~G~~~l~sg~tFG~FMsi 72 (78)
....|++....+|+.+|.+.+..+.=.+=-.-.-++.+. -|++..++.|++|-++
T Consensus 339 l~~l~fi~~F~~GG~tGi~la~~~~D~~lHdTy~VVaHF-H~vl~~g~v~~~~a~~ 393 (514)
T d1v54a_ 339 MWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHF-HYVLSMGAVFAIMGGF 393 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTBHHHHHHH-HHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhheecccchhheeeccceeEEeee-eeeeehHHHHHHHHHH
Confidence 445667777777777777777554432211112233333 4788888889888654
No 7
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.65 E-value=1.3e+02 Score=18.80 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=17.8
Q ss_pred hhhhhHHHHHHHHHH-------HHhcCCcchhhHhhhhHHh
Q psy13979 27 SVGMATGGLFGGFNA-------LRYGLRGAELLKNVGKVMV 60 (78)
Q Consensus 27 ~VG~~~G~l~G~~~~-------~r~g~~g~~~i~~~G~~~l 60 (78)
+++.++|+|.|.+.. .+.++..+..+..+.+..+
T Consensus 256 t~aai~Gal~GA~~G~~~IP~~w~~~l~~~~~i~~la~~l~ 296 (301)
T d1t5ja_ 256 SLASMYGAMAGAYYGFKNIPKEWIDGLKNKEVIFELAERLY 296 (301)
T ss_dssp HHHHHHHHHHHHHHCGGGSCHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhcCCHHHHHHhcCHHHHHHHHHHHH
Confidence 455555555554432 3445555666665555443
No 8
>d1un8a1 a.208.1.1 (A:336-550) Citrobacter dihydroxyacetone kinase extra ATP-binding domain {Citrobacter freundii [TaxId: 546]}
Probab=9.26 E-value=97 Score=19.69 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=17.1
Q ss_pred chHHHHHHhHHhhhhhhhhHHHHHHHH
Q psy13979 13 SCFDRMKVGFMIGFSVGMATGGLFGGF 39 (78)
Q Consensus 13 sc~~kikmG~~MG~~VG~~~G~l~G~~ 39 (78)
.-++++.+.++++ +|+..|.||+.+
T Consensus 80 ~~l~~ia~~~~~~--~gG~SG~L~s~~ 104 (215)
T d1un8a1 80 TLFALIGERLTVV--MGGSSGVLMSIF 104 (215)
T ss_dssp HHHHHHHHHHHHH--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCcchHHHHHHH
Confidence 4577788888755 477777777654
No 9
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.88 E-value=1.2e+02 Score=14.87 Aligned_cols=13 Identities=38% Similarity=0.767 Sum_probs=6.7
Q ss_pred hhhhhhhhHHHHH
Q psy13979 24 IGFSVGMATGGLF 36 (78)
Q Consensus 24 MG~~VG~~~G~l~ 36 (78)
.|.+-|.+.|++|
T Consensus 13 fgt~tg~alg~ly 25 (34)
T d2e74d2 13 FGTVTGVALGALY 25 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhHHHHHHhhhh
Confidence 3455555555554
No 10
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.82 E-value=2e+02 Score=15.35 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=20.6
Q ss_pred HHHHHHhHHhhhhhhhhHHHHHHHHHH
Q psy13979 15 FDRMKVGFMIGFSVGMATGGLFGGFNA 41 (78)
Q Consensus 15 ~~kikmG~~MG~~VG~~~G~l~G~~~~ 41 (78)
.|++--..-|+-+|++....++-.|.+
T Consensus 27 ~D~~LYr~Tm~L~~~G~~~s~~~l~~a 53 (58)
T d1v54j_ 27 TDNILYRVTMTLCLGGTLYSLYCLGWA 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888887777755544
Done!