RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13979
         (78 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.5 bits (73), Expect = 0.007
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 39  FNALRYGLRGAELLKNVGKVMVQGGGSFG-TFMAIGA 74
           +  LR  L     L+    V++ G    G T++A+  
Sbjct: 137 YLKLRQALLE---LRPAKNVLIDGVLGSGKTWVALDV 170


>2zih_A Vacuolar protein sorting-associated protein 74; beta hairpin, VPS,
           golgi localization, VPS74, tetramer, golgi apparatus,
           phosphoprotein; 2.80A {Saccharomyces cerevisiae} PDB:
           2zii_A
          Length = 347

 Score = 28.7 bits (63), Expect = 0.16
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 32  TGGLFGGFNALRYGLRGAEL--LKNVGKVMVQGGGSFGTFMAIGAGIRC 78
            G L    +++ Y LRG  +  L   GK+ +    +   F      I  
Sbjct: 84  EGYLSFWNDSISYALRGCIIIELALRGKIRILDDSARKRFDLSERLIEV 132


>3kn1_A Golgi phosphoprotein 3; beta hairpin, phosphoinositide binding
          domain, cell membrane, cytoplasm, endosome, golgi
          apparatus, membrane, mitochondrion; HET: MSE; 2.90A
          {Homo sapiens}
          Length = 249

 Score = 27.4 bits (60), Expect = 0.45
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 32 TGGLFGGFNALRYGLRGAEL--LKNVGKVMVQGGGS 65
           G      + +  GLRG  L  L   G++ ++  G 
Sbjct: 26 EGYTSFWNDCISSGLRGCMLIELALRGRLQLEACGM 61


>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold,
          oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana}
          SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A*
          1m67_A* 1n1e_A* 1n1g_A*
          Length = 366

 Score = 24.0 bits (53), Expect = 6.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 47 RGAELLKNVGKVMVQGGGSFGTFMAI 72
             + L  + K +V G G+FGT +A+
Sbjct: 7  SAKDELLYLNKAVVFGSGAFGTALAM 32


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 24.1 bits (52), Expect = 6.8
 Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 34/81 (41%)

Query: 22   FMI-GFSVGMATGGLFGGFNALRYGLRG---------AELLKNVG-----------KVMV 60
             +   F   M+        N L     G         A  +++V            ++ +
Sbjct: 1075 ILQESFINTMS-----AWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICI 1129

Query: 61   QGG-------GSFGTFMAIGA 74
             GG       GSF  F  + A
Sbjct: 1130 VGGYDDFQEEGSFE-FGNMKA 1149


>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase;
          1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
          Length = 335

 Score = 23.7 bits (52), Expect = 7.3
 Identities = 4/16 (25%), Positives = 10/16 (62%)

Query: 57 KVMVQGGGSFGTFMAI 72
           V + G G+ G+ +++
Sbjct: 2  IVSILGAGAMGSALSV 17


>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
          oxidoreductase, phospholipid biosynthesis; HET: EPE;
          2.10A {Coxiella burnetii}
          Length = 356

 Score = 23.6 bits (52), Expect = 8.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 57 KVMVQGGGSFGTFMAI 72
           + + G GS+GT +A+
Sbjct: 31 PIAILGAGSWGTALAL 46


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.148    0.464 

Gapped
Lambda     K      H
   0.267   0.0874    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,285,294
Number of extensions: 71187
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 33
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.2 bits)