RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13979
         (78 letters)



>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
          {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
          Length = 189

 Score = 25.2 bits (54), Expect = 0.76
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 57 KVMVQGGGSFGTFMAI 72
          K +V G G+FGT +A+
Sbjct: 9  KAVVFGSGAFGTALAM 24


>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 180

 Score = 23.9 bits (50), Expect = 2.6
 Identities = 4/16 (25%), Positives = 10/16 (62%)

Query: 57 KVMVQGGGSFGTFMAI 72
           V + G G+ G+ +++
Sbjct: 2  IVSILGAGAMGSALSV 17


>d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752
          {Thermotoga maritima [TaxId: 2336]}
          Length = 193

 Score = 23.6 bits (50), Expect = 3.3
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 57 KVMVQGGGSFGTFMAIGAGI 76
          K+ + G GS    + +   I
Sbjct: 4  KISIIGAGSVRFALQLVGDI 23


>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 244

 Score = 23.4 bits (50), Expect = 4.2
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 21  GFMIGFSVGMATGGLFGGF 39
           G ++  ++G  TG  FG  
Sbjct: 134 GIIVLHAIGGGTGSGFGAL 152


>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
          transformylase PurT, N-domain {Escherichia coli [TaxId:
          562]}
          Length = 111

 Score = 22.9 bits (49), Expect = 4.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 48 GAELLKNVGKVMVQGGGSFGTFMAIGA 74
          G  L     +VM+ G G  G  +AI  
Sbjct: 4  GTALRPAATRVMLLGSGELGKEVAIEC 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.148    0.464 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 300,000
Number of extensions: 12133
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 11
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)