BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1398
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/84 (88%), Positives = 76/84 (90%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL
Sbjct: 48 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 107
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 108 FEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/84 (88%), Positives = 76/84 (90%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 104 FEDTNLCAIHAKRVTIMPKDIQLA 127
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/84 (88%), Positives = 76/84 (90%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL
Sbjct: 45 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 104
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 105 FEDTNLCAIHAKRVTIMPKDIQLA 128
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 148 bits (373), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/84 (86%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGL
Sbjct: 48 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGL 107
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 108 FEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 148 bits (373), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 73/84 (86%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGL
Sbjct: 45 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGL 104
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 105 FEDTNLCAIHAKRVTIMPKDIQLA 128
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/84 (86%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 104 FEDTNLCAIHAKRVTIMPKDIQLA 127
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/84 (86%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 45 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 104
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 105 FEDTNLCAIHAKRVTIMPKDIQLA 128
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/84 (86%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 104 FEDTNLCAIHAKRVTIMPKDIQLA 127
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/84 (86%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 45 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 104
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 105 FEDTNLCAIHAKRVTIMPKDIQLA 128
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/84 (86%), Positives = 76/84 (90%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL
Sbjct: 2 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDI+LA
Sbjct: 62 FEDTNLCAIHAKRVTIMPKDIELA 85
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/84 (86%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 104 FEDTNLCAIHAKRVTIMPKDIQLA 127
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGL
Sbjct: 48 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGL 107
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMP+DIQLA
Sbjct: 108 FEDTNLCAIHAKRVTIMPQDIQLA 131
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGL
Sbjct: 48 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGL 107
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHA+RVTIMPKDIQLA
Sbjct: 108 FEDTNLCAIHAQRVTIMPKDIQLA 131
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDF+TDLRFQSSAVMALQEA EAYLVGL
Sbjct: 48 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFQTDLRFQSSAVMALQEACEAYLVGL 107
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 108 FEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIR+LPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGL
Sbjct: 48 GTVALREIRRYQKSTELLIRQLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGL 107
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 108 FEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ +STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGL
Sbjct: 48 GTVALREIRRYQQSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGL 107
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 108 FEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 146 bits (369), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/84 (86%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 25 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 84
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 85 FEDTNLCAIHAKRVTIMPKDIQLA 108
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 146 bits (368), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/84 (84%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGL
Sbjct: 48 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGL 107
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 108 FEDTNLCAIHAKRVTIMPKDIQLA 131
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 145 bits (367), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/84 (84%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGL
Sbjct: 45 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGL 104
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 105 FEDTNLCAIHAKRVTIMPKDIQLA 128
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 145 bits (366), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ +STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 44 GTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 104 FEDTNLCAIHAKRVTIMPKDIQLA 127
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/78 (92%), Positives = 73/78 (93%), Gaps = 3/78 (3%)
Query: 8 RFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNL 67
R+QK STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNL
Sbjct: 53 RYQK---STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNL 109
Query: 68 CAIHAKRVTIMPKDIQLA 85
CAIHAKRV IMPKDIQLA
Sbjct: 110 CAIHAKRVAIMPKDIQLA 127
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 74/84 (88%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAK VTIMPKDIQLA
Sbjct: 104 FEDTNLCAIHAKHVTIMPKDIQLA 127
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 144 bits (364), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/78 (92%), Positives = 73/78 (93%), Gaps = 3/78 (3%)
Query: 8 RFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNL 67
R+QK STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNL
Sbjct: 53 RYQK---STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNL 109
Query: 68 CAIHAKRVTIMPKDIQLA 85
CAIHAKRV IMPKDIQLA
Sbjct: 110 CAIHAKRVHIMPKDIQLA 127
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|E Chain E, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 135
Score = 144 bits (364), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 74/84 (88%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRV IMPKDIQLA
Sbjct: 104 FEDTNLCAIHAKRVHIMPKDIQLA 127
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 144 bits (364), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 74/84 (88%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRV IMPKDIQLA
Sbjct: 104 FEDTNLCAIHAKRVIIMPKDIQLA 127
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 74/84 (88%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAK VTIMPKDIQLA
Sbjct: 104 FEDTNLCAIHAKAVTIMPKDIQLA 127
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/84 (83%), Positives = 74/84 (88%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRL+REIAQDFKTDLRFQSSAVMALQEA E+YLVGL
Sbjct: 48 GTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGL 107
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLC IHAKRVTIMPKDIQLA
Sbjct: 108 FEDTNLCVIHAKRVTIMPKDIQLA 131
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 75/84 (89%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ +STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV L
Sbjct: 7 GTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 66
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLCAIHAKRVTIMPKDIQLA
Sbjct: 67 FEDTNLCAIHAKRVTIMPKDIQLA 90
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 142 bits (357), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/78 (91%), Positives = 72/78 (92%), Gaps = 3/78 (3%)
Query: 8 RFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNL 67
R+QK STELLIRKLPFQRLVREIAQDF TDLRFQSSAVMALQEASEAYLV LFEDTNL
Sbjct: 53 RYQK---STELLIRKLPFQRLVREIAQDFXTDLRFQSSAVMALQEASEAYLVALFEDTNL 109
Query: 68 CAIHAKRVTIMPKDIQLA 85
AIHAKRVTIMPKDIQLA
Sbjct: 110 AAIHAKRVTIMPKDIQLA 127
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
Length = 135
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/84 (79%), Positives = 73/84 (86%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+MALQEA+EA+LV L
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLC IHAKRVTI PKDIQLA
Sbjct: 104 FEDTNLCTIHAKRVTIFPKDIQLA 127
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones
H3 And H4
Length = 77
Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/67 (98%), Positives = 66/67 (98%)
Query: 19 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 78
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 62
Query: 79 PKDIQLA 85
PKDIQLA
Sbjct: 63 PKDIQLA 69
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 76
Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/67 (98%), Positives = 66/67 (98%)
Query: 19 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 78
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 2 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 61
Query: 79 PKDIQLA 85
PKDIQLA
Sbjct: 62 PKDIQLA 68
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 72/84 (85%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV L
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLC IHAKRVTI PKDIQLA
Sbjct: 104 FEDTNLCTIHAKRVTIFPKDIQLA 127
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 71/82 (86%)
Query: 4 VARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFE 63
VA ++ KSTELLIRKLPFQRLVREI QDFKTDLR+QS+A+ ALQEA+EA+LV LFE
Sbjct: 46 VALREIRRYQKSTELLIRKLPFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFE 105
Query: 64 DTNLCAIHAKRVTIMPKDIQLA 85
DTNLC IHAKRVTI PKDIQLA
Sbjct: 106 DTNLCTIHAKRVTIFPKDIQLA 127
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 128 bits (322), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/78 (83%), Positives = 69/78 (88%), Gaps = 3/78 (3%)
Query: 8 RFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNL 67
RFQK STELLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQE+ EAYLV LFEDTNL
Sbjct: 53 RFQK---STELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNL 109
Query: 68 CAIHAKRVTIMPKDIQLA 85
AIHAKRVTI K+I+LA
Sbjct: 110 AAIHAKRVTIQKKEIKLA 127
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9R|A Chain A, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 135
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 72/84 (85%)
Query: 2 NWVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 61
VA ++ KSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV L
Sbjct: 44 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFLVAL 103
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLA 85
FEDTNLC IHAKRVTI PKDIQLA
Sbjct: 104 FEDTNLCTIHAKRVTIFPKDIQLA 127
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 59/72 (81%), Gaps = 3/72 (4%)
Query: 17 ELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 73
+LLI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+HAK
Sbjct: 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAK 68
Query: 74 RVTIMPKDIQLA 85
R+TIM KD+QLA
Sbjct: 69 RITIMKKDMQLA 80
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 100
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 63/80 (78%), Gaps = 3/80 (3%)
Query: 9 FQKPMKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEASEAYLVGLFEDT 65
+K +ST+LLI ++PF RLV+E+ F T+ LR+QS A+MALQEASEAYLVGL E T
Sbjct: 17 IRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHT 76
Query: 66 NLCAIHAKRVTIMPKDIQLA 85
NL A+HAKR+TIM KD+QLA
Sbjct: 77 NLLALHAKRITIMRKDMQLA 96
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|C Chain C, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|E Chain E, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|G Chain G, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 92
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 63/80 (78%), Gaps = 3/80 (3%)
Query: 9 FQKPMKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEASEAYLVGLFEDT 65
+K +ST+LLI ++PF RLV+E+ F T+ LR+QS A+MALQEASEAYLVGL E T
Sbjct: 5 IRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHT 64
Query: 66 NLCAIHAKRVTIMPKDIQLA 85
NL A+HAKR+TIM KD+QLA
Sbjct: 65 NLLALHAKRITIMRKDMQLA 84
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 10 QKPMKSTELLIRKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNL 67
+K KST LLIRKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L
Sbjct: 55 RKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYL 114
Query: 68 CAIHAKRVTIMPKDIQLA 85
+HA RVT+ PKD+QLA
Sbjct: 115 LTLHAGRVTLFPKDVQLA 132
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 10 QKPMKSTELLIRKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNL 67
+K KST LLIRKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L
Sbjct: 52 RKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYL 111
Query: 68 CAIHAKRVTIMPKDIQLA 85
+HA RVT+ PKD+QLA
Sbjct: 112 LTLHAGRVTLFPKDVQLA 129
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 10 QKPMKSTELLIRKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNL 67
+K KST LLIRKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L
Sbjct: 68 RKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYL 127
Query: 68 CAIHAKRVTIMPKDIQLA 85
+HA RVT+ PKD+QLA
Sbjct: 128 LTLHAGRVTLFPKDVQLA 145
>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 82
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 18 LLIRKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 75
LLIRKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RV
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 76 TIMPKDIQLA 85
T+ PKD+QLA
Sbjct: 62 TLFPKDVQLA 71
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The
Partially Unfolded Dimer Of The Centromere-specific
Cse4/h4 Histone Variant
Length = 121
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%)
Query: 19 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 71
LI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+H
Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56
>pdb|1KU5|A Chain A, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1KU5|B Chain B, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 70
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 24 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 83
P RL+R+ + R A L E E Y + + + A HA R T+ +DI+
Sbjct: 11 PVDRLIRKAGAE-----RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIK 65
Query: 84 LAAES 88
LA +S
Sbjct: 66 LAIKS 70
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 27 RLVREIAQDFKTDLRFQS-SAVMALQEASEAYLVGLFEDTNLCAIH 71
R R + ++F+ ++S S ++ + E S+ + +FED+N+ +H
Sbjct: 296 RYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLH 341
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 27 RLVREIAQDFKTDLRFQS-SAVMALQEASEAYLVGLFEDTNLCAIH 71
R R + ++F+ ++S S ++ + E S+ + +FED+N+ +H
Sbjct: 296 RYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLH 341
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 27 RLVREIAQDFKTDLRFQS-SAVMALQEASEAYLVGLFEDTNLCAIH 71
R R + ++F+ ++S S ++ + E S+ + +FED+N+ +H
Sbjct: 296 RYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLH 341
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 27 RLVREIAQDFKTDLRFQS-SAVMALQEASEAYLVGLFEDTNLCAIH 71
R R + ++F+ ++S S ++ + E S+ + +FED+N+ +H
Sbjct: 296 RYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLH 341
>pdb|3ZIK|A Chain A, Structure Of The Wpl1 Protein
pdb|3ZIK|B Chain B, Structure Of The Wpl1 Protein
pdb|3ZIL|A Chain A, Structure Of The Wpl1 Protein
Length = 378
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 7 ERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMAL 50
E F P+ + E+ +K+ RLV+ QD L+F ++ AL
Sbjct: 109 ENFILPLATDEVFPKKIAGSRLVKLNYQDLLRKLKFTNTCEYAL 152
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 52 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVEN 91
E E+ V +F +T + AI K + KD+ E VEN
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVEN 103
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 52 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVEN 91
E E+ V +F +T + AI K + KD+ E VEN
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVEN 103
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 52 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVEN 91
E E+ V +F +T + AI K + KD+ E VEN
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVEN 103
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 52 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVEN 91
E E+ V +F +T + AI K + KD+ E VEN
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVEN 103
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 52 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVEN 91
E E+ V +F +T + AI K + KD+ E VEN
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVEN 103
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 52 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVEN 91
E E+ V +F +T + AI K + KD+ E VEN
Sbjct: 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVEN 103
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 10 QKPMKST--ELLIRKLPFQRLVREIAQDFKT 38
Q P K T ++L+R +PFQ REI + F T
Sbjct: 8 QVPKKQTTSKILVRNIPFQANQREIRELFST 38
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 13/54 (24%)
Query: 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMAL-------------QEASEAY 57
E LI K+ F RL ++A+ R+Q AV+AL QEA E Y
Sbjct: 372 EALIGKVRFSRLGIKLAETHNKGYRWQHEAVIALASPDNXNAFELTPQEAEEWY 425
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,284,013
Number of Sequences: 62578
Number of extensions: 65207
Number of successful extensions: 262
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 66
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)