Query psy1398
Match_columns 102
No_of_seqs 114 out of 588
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 16:30:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yfv_A Histone H3-like centrom 100.0 5.3E-47 1.8E-51 259.0 6.0 87 3-89 11-100 (100)
2 1tzy_C Histone H3; histone-fol 100.0 9.8E-46 3.4E-50 264.3 6.4 89 3-91 46-134 (136)
3 3nqu_A Histone H3-like centrom 100.0 2.9E-44 9.9E-49 257.7 7.2 88 5-92 47-136 (140)
4 3r45_A Histone H3-like centrom 100.0 5.5E-44 1.9E-48 259.8 7.2 88 5-92 63-152 (156)
5 2hue_B Histone H3; mini beta s 100.0 5.2E-39 1.8E-43 210.6 6.7 75 17-91 1-75 (77)
6 3nqj_A Histone H3-like centrom 100.0 1.8E-38 6.1E-43 210.2 6.8 75 18-92 2-78 (82)
7 2l5a_A Histone H3-like centrom 100.0 6.7E-35 2.3E-39 223.3 5.9 79 14-92 6-87 (235)
8 2ly8_A Budding yeast chaperone 100.0 2.7E-29 9.3E-34 176.3 7.2 73 19-91 1-114 (121)
9 1b67_A Protein (histone HMFA); 99.9 5.4E-22 1.9E-26 124.9 5.3 63 20-87 3-65 (68)
10 1ku5_A HPHA, archaeal histon; 99.8 6.3E-20 2.2E-24 116.4 5.6 64 19-87 6-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.7 2.4E-17 8.1E-22 109.4 5.7 71 14-87 3-73 (93)
12 1id3_B Histone H4; nucleosome 99.3 1.3E-12 4.3E-17 88.7 6.1 75 10-89 19-93 (102)
13 2hue_C Histone H4; mini beta s 99.3 8.3E-13 2.8E-17 86.4 5.0 70 14-88 5-74 (84)
14 1tzy_D Histone H4-VI; histone- 99.3 2E-12 6.9E-17 87.4 6.6 75 10-89 20-94 (103)
15 2yfw_B Histone H4, H4; cell cy 99.3 1.8E-12 6.2E-17 87.7 5.7 74 12-90 22-95 (103)
16 3b0c_T CENP-T, centromere prot 99.3 4.6E-12 1.6E-16 87.0 6.8 70 17-91 5-74 (111)
17 1f1e_A Histone fold protein; a 99.3 3.2E-12 1.1E-16 92.5 6.1 73 11-88 74-146 (154)
18 1taf_B TFIID TBP associated fa 99.2 2.4E-11 8.1E-16 77.9 5.7 64 19-87 6-69 (70)
19 3b0c_W CENP-W, centromere prot 99.2 7.1E-11 2.4E-15 75.7 6.1 66 19-88 4-69 (76)
20 1f1e_A Histone fold protein; a 99.1 4.1E-11 1.4E-15 86.7 5.4 66 20-89 5-70 (154)
21 1taf_A TFIID TBP associated fa 99.1 1.2E-10 4.1E-15 74.2 6.7 61 24-89 6-66 (68)
22 4dra_A Centromere protein S; D 99.1 1.2E-10 4.2E-15 80.6 5.3 62 24-87 32-93 (113)
23 3b0b_B CENP-S, centromere prot 99.0 3.3E-10 1.1E-14 77.7 5.5 61 25-87 25-85 (107)
24 3v9r_A MHF1, uncharacterized p 99.0 5.6E-10 1.9E-14 74.5 5.9 49 39-87 30-78 (90)
25 1jfi_B DR1 protein, transcript 98.9 1.8E-09 6.2E-14 79.8 7.1 72 13-88 9-80 (179)
26 2byk_B Chrac-14; nucleosome sl 98.9 2.7E-09 9.2E-14 74.7 6.8 72 16-90 6-77 (128)
27 3vh5_A CENP-S; histone fold, c 98.9 3.1E-09 1E-13 76.0 5.9 60 26-87 26-85 (140)
28 1n1j_B NF-YC; histone-like PAI 98.7 1.7E-08 5.7E-13 67.3 4.4 79 6-88 4-84 (97)
29 4g92_C HAPE; transcription fac 98.4 5.1E-07 1.8E-11 62.2 6.7 67 20-87 39-105 (119)
30 2l5a_A Histone H3-like centrom 98.3 7.4E-07 2.5E-11 68.2 6.2 68 24-91 154-228 (235)
31 2f8n_G Core histone macro-H2A. 98.3 1.2E-06 4.1E-11 60.7 6.5 67 17-87 20-86 (120)
32 2nqb_C Histone H2A; nucleosome 98.3 1.4E-06 4.7E-11 60.7 6.0 67 17-87 21-87 (123)
33 2f8n_K Histone H2A type 1; nuc 98.3 1E-06 3.5E-11 63.3 5.5 68 17-88 42-109 (149)
34 1h3o_B Transcription initiatio 98.3 3E-06 1E-10 54.8 7.2 65 18-86 4-68 (76)
35 1tzy_A Histone H2A-IV; histone 98.2 1.9E-06 6.6E-11 60.4 6.0 67 17-87 23-89 (129)
36 1jfi_A Transcription regulator 98.2 6E-07 2.1E-11 59.9 3.0 69 16-88 8-76 (98)
37 1f66_C Histone H2A.Z; nucleoso 98.2 1.7E-06 6E-11 60.6 5.4 69 17-88 25-93 (128)
38 1id3_C Histone H2A.1; nucleoso 98.1 2.4E-06 8.4E-11 60.0 4.9 67 17-87 23-89 (131)
39 2jss_A Chimera of histone H2B. 98.0 6.8E-06 2.3E-10 60.5 4.6 68 17-87 103-170 (192)
40 2nqb_D Histone H2B; nucleosome 97.9 3.8E-05 1.3E-09 53.7 7.4 68 22-89 32-99 (123)
41 1tzy_B Histone H2B; histone-fo 97.9 4.3E-05 1.5E-09 53.7 7.3 69 21-89 34-102 (126)
42 2byk_A Chrac-16; nucleosome sl 97.7 4E-05 1.4E-09 54.3 5.0 66 21-87 18-84 (140)
43 2jss_A Chimera of histone H2B. 97.6 0.00029 9.9E-09 51.7 7.6 66 23-88 3-68 (192)
44 1r4v_A Hypothetical protein AQ 90.0 0.32 1.1E-05 35.5 3.9 79 10-93 15-95 (171)
45 1wwi_A Hypothetical protein TT 85.7 0.91 3.1E-05 32.4 4.0 70 19-93 2-71 (148)
46 4dra_E Centromere protein X; D 80.9 5.1 0.00018 25.8 5.8 65 17-84 10-75 (84)
47 3ksy_A SOS-1, SON of sevenless 80.8 5.2 0.00018 35.3 7.6 66 17-87 102-167 (1049)
48 3b0b_C CENP-X, centromere prot 75.1 11 0.00037 23.9 6.1 63 19-84 8-71 (81)
49 1g8p_A Magnesium-chelatase 38 68.0 23 0.0008 25.6 7.3 58 38-95 264-328 (350)
50 3uk6_A RUVB-like 2; hexameric 66.1 31 0.0011 25.2 7.7 51 38-88 275-329 (368)
51 3v9r_B MHF2, uncharacterized p 62.8 7.9 0.00027 25.3 3.4 59 20-85 2-72 (88)
52 1h3o_A Transcription initiatio 61.2 13 0.00044 23.5 4.1 52 19-71 2-53 (75)
53 2ly8_A Budding yeast chaperone 60.7 8.5 0.00029 26.3 3.5 30 38-67 61-90 (121)
54 3k1j_A LON protease, ATP-depen 53.0 54 0.0018 26.6 7.6 61 27-87 297-373 (604)
55 3kw6_A 26S protease regulatory 35.7 35 0.0012 20.0 3.1 31 57-87 41-71 (78)
56 2v1u_A Cell division control p 33.0 1.3E+02 0.0046 21.4 6.8 49 39-87 220-274 (387)
57 3ts9_A Interferon-induced heli 28.8 22 0.00077 24.8 1.4 46 21-67 6-51 (138)
58 2dzn_B 26S protease regulatory 27.7 57 0.0019 19.4 3.1 31 57-87 36-66 (82)
59 2c9o_A RUVB-like 1; hexameric 27.3 1.8E+02 0.0062 22.4 6.6 50 39-88 383-436 (456)
60 3vlf_B 26S protease regulatory 26.9 55 0.0019 19.9 2.9 31 57-87 39-69 (88)
61 1bh9_B TAFII28; histone fold, 25.6 1.3E+02 0.0045 19.0 7.3 66 20-90 17-83 (89)
62 2eqb_B RAB guanine nucleotide 25.3 60 0.002 21.3 3.0 32 45-76 47-78 (97)
63 3aji_B S6C, proteasome (prosom 24.8 69 0.0024 18.8 3.1 31 57-87 39-69 (83)
64 3szr_A Interferon-induced GTP- 23.2 69 0.0024 26.3 3.6 52 6-64 405-461 (608)
65 3bos_A Putative DNA replicatio 22.8 1.7E+02 0.0057 19.2 5.3 47 39-86 191-240 (242)
66 2ocy_A RAB guanine nucleotide 22.2 70 0.0024 22.5 3.0 47 45-91 79-127 (154)
67 1njg_A DNA polymerase III subu 21.8 1.7E+02 0.0057 18.8 5.2 46 39-85 202-247 (250)
68 2krk_A 26S protease regulatory 21.3 87 0.003 19.0 3.1 31 57-87 49-79 (86)
69 2qby_A CDC6 homolog 1, cell di 20.6 2.3E+02 0.008 20.1 7.5 49 39-87 216-270 (386)
70 2chg_A Replication factor C sm 20.4 1.8E+02 0.0061 18.6 5.3 46 39-86 178-223 (226)
No 1
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=5.3e-47 Score=258.95 Aligned_cols=87 Identities=59% Similarity=0.815 Sum_probs=66.6
Q ss_pred chhhhhhhcccccchhhcccchHHHHHHHHHhhccc---ccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCc
Q psy1398 3 WVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 79 (102)
Q Consensus 3 ~valrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~---~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~ 79 (102)
+|||+|||+|||||+|||||+||+||||||++++++ ++|||++|+.||||++|+|||+||||+|+||+||||||||+
T Consensus 11 t~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~ 90 (100)
T 2yfv_A 11 DLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMR 90 (100)
T ss_dssp -----------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred chHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCH
Confidence 589999999999999999999999999999999986 99999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHH
Q psy1398 80 KDIQLAAESV 89 (102)
Q Consensus 80 kDi~La~ri~ 89 (102)
+||+||++|+
T Consensus 91 kDiqLa~rir 100 (100)
T 2yfv_A 91 KDMQLARRIR 100 (100)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 2
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=9.8e-46 Score=264.28 Aligned_cols=89 Identities=83% Similarity=1.074 Sum_probs=87.4
Q ss_pred chhhhhhhcccccchhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccH
Q psy1398 3 WVARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82 (102)
Q Consensus 3 ~valrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi 82 (102)
.|||+|||+||+||+|||||+||+||||||+++|++++|||++|++||||++|+|||+||||+|+||+||||||||++||
T Consensus 46 t~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDi 125 (136)
T 1tzy_C 46 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 125 (136)
T ss_dssp HHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred hhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy1398 83 QLAAESVEN 91 (102)
Q Consensus 83 ~La~ri~~~ 91 (102)
+||.+|+|+
T Consensus 126 qLa~rirg~ 134 (136)
T 1tzy_C 126 QLARRIRGE 134 (136)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhCc
Confidence 999999985
No 3
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=2.9e-44 Score=257.69 Aligned_cols=88 Identities=52% Similarity=0.736 Sum_probs=72.8
Q ss_pred hhhhhhcccccchhhcccchHHHHHHHHHhhcc--cccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccH
Q psy1398 5 ARERFQKPMKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82 (102)
Q Consensus 5 alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~--~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi 82 (102)
+|+|||+|||||+|||||+||+||||||+++|+ .++|||++|++||||++|+|||+||||+|+||+||||||||++||
T Consensus 47 ~LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDi 126 (140)
T 3nqu_A 47 WLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDV 126 (140)
T ss_dssp ------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred cHHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 399999999999999999999999999999998 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy1398 83 QLAAESVENA 92 (102)
Q Consensus 83 ~La~ri~~~~ 92 (102)
+||.+|+|.-
T Consensus 127 qLArrirg~~ 136 (140)
T 3nqu_A 127 QLARRIRGLE 136 (140)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHhcccc
Confidence 9999999853
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.5e-44 Score=259.83 Aligned_cols=88 Identities=52% Similarity=0.736 Sum_probs=74.0
Q ss_pred hhhhhhcccccchhhcccchHHHHHHHHHhhcc--cccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccH
Q psy1398 5 ARERFQKPMKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82 (102)
Q Consensus 5 alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~--~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi 82 (102)
+|+|||+|||||+|||||+||+||||||+++|+ .++|||++|++|||||+|+|||+||||+|+||+||||||||++||
T Consensus 63 ~LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDI 142 (156)
T 3r45_A 63 WLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDV 142 (156)
T ss_dssp ------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHH
T ss_pred hHHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 499999999999999999999999999999998 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy1398 83 QLAAESVENA 92 (102)
Q Consensus 83 ~La~ri~~~~ 92 (102)
+||.+|+|.-
T Consensus 143 qLArrIrg~~ 152 (156)
T 3r45_A 143 QLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHcccc
Confidence 9999999864
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=5.2e-39 Score=210.62 Aligned_cols=75 Identities=88% Similarity=1.155 Sum_probs=72.8
Q ss_pred hhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHHHh
Q psy1398 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVEN 91 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~~~ 91 (102)
.|||||+||+||||||+++|++++|||++|+.||||++|+|++++|||+|+||+||||||||++||+||.+|+|+
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=210.24 Aligned_cols=75 Identities=56% Similarity=0.835 Sum_probs=71.5
Q ss_pred hhcccchHHHHHHHHHhhcc--cccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHHHhh
Q psy1398 18 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVENA 92 (102)
Q Consensus 18 lLIpk~pF~RLVrEI~~~~~--~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~~~~ 92 (102)
|||||+||+||||||+++++ +++|||++|+.||||++|+|++++|||+|+||+||||||||++||+||++|+|.-
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 78999999999999999998 6899999999999999999999999999999999999999999999999999863
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-35 Score=223.32 Aligned_cols=79 Identities=62% Similarity=0.891 Sum_probs=71.8
Q ss_pred ccchhhcccchHHHHHHHHHhhccc---ccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHHH
Q psy1398 14 KSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVE 90 (102)
Q Consensus 14 kst~lLIpk~pF~RLVrEI~~~~~~---~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~~ 90 (102)
....|||||+||+||||||+++|++ ++|||++|+.|||||+|+|||+||||+|+||+||||||||++|||||++|+|
T Consensus 6 ~~~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 6 HHKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp -----CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 3457999999999999999999986 8999999999999999999999999999999999999999999999999997
Q ss_pred hh
Q psy1398 91 NA 92 (102)
Q Consensus 91 ~~ 92 (102)
..
T Consensus 86 ~~ 87 (235)
T 2l5a_A 86 QF 87 (235)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-29 Score=176.32 Aligned_cols=73 Identities=59% Similarity=0.855 Sum_probs=69.1
Q ss_pred hcccchHHHHHHHHHhhccc---ccccchHHHHHHHHHHHHHHHHHhHhHHHHhhh------------------------
Q psy1398 19 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH------------------------ 71 (102)
Q Consensus 19 LIpk~pF~RLVrEI~~~~~~---~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~H------------------------ 71 (102)
||||+||+||||||++++++ ++|||++|+.|||||+|+|||+||||+|+||+|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 79999999999999999987 899999999999999999999999999999987
Q ss_pred --------------cCccccCcccHHHHHHHHHh
Q psy1398 72 --------------AKRVTIMPKDIQLAAESVEN 91 (102)
Q Consensus 72 --------------akRvTi~~kDi~La~ri~~~ 91 (102)
|||+||++.|+.++.+-.|+
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 79999999999999887665
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.85 E-value=5.4e-22 Score=124.89 Aligned_cols=63 Identities=27% Similarity=0.313 Sum_probs=61.1
Q ss_pred cccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 20 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 20 Ipk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
||++||+||+|++ ++.||+++|+.+||+++|.|++.+|++|+.||.|+||+||+++|++++.+
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 7999999999999 68999999999999999999999999999999999999999999999975
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.80 E-value=6.3e-20 Score=116.36 Aligned_cols=64 Identities=30% Similarity=0.351 Sum_probs=61.4
Q ss_pred hcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 19 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 19 LIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
-||++||.||+|+. +..||+++|..+||+++|.|+.++++||+.+|.||||+||+++|++++.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 48999999999997 78999999999999999999999999999999999999999999999964
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.69 E-value=2.4e-17 Score=109.43 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=63.5
Q ss_pred ccchhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 14 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 14 kst~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
+++++.+|++|+.|++|+... ...||+++|..+||+++|.|+..++++|+.+|.|+||+||+.+|+..|.+
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 467899999999999999943 45899999999999999999999999999999999999999999999986
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.35 E-value=1.3e-12 Score=88.67 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=65.4
Q ss_pred hcccccchhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHH
Q psy1398 10 QKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESV 89 (102)
Q Consensus 10 r~yQkst~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~ 89 (102)
|+-.+...--||+.|..||.|.. +..|++++|.++|++..|.|+.++.+||..+|.|++|.||+++|+.+|++-.
T Consensus 19 ~k~~r~~i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 19 RKILRDNIQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp -----CCGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHhccCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 34445555669999999999987 8899999999999999999999999999999999999999999999998744
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.35 E-value=8.3e-13 Score=86.43 Aligned_cols=70 Identities=21% Similarity=0.201 Sum_probs=64.2
Q ss_pred ccchhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHH
Q psy1398 14 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAES 88 (102)
Q Consensus 14 kst~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri 88 (102)
+...--||+.|..||.|.. +..|++++|.++|++..|.|+.++.+||..+|.|+||+||+++|+.+|.+-
T Consensus 5 r~~~~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~ 74 (84)
T 2hue_C 5 RDNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp GGGCCSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred cccCCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 3444459999999999987 889999999999999999999999999999999999999999999999763
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.34 E-value=2e-12 Score=87.39 Aligned_cols=75 Identities=21% Similarity=0.206 Sum_probs=67.5
Q ss_pred hcccccchhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHH
Q psy1398 10 QKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESV 89 (102)
Q Consensus 10 r~yQkst~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~ 89 (102)
|+-.++..--||+.+..||.|.. +..|++++|.++|++..|.|+.++.++|..+|.|+||.||+++|+.+|.+-.
T Consensus 20 ~k~~r~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 20 RKVLRDNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp -CCCCCGGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred ccchhhhcccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 34456666679999999999987 6789999999999999999999999999999999999999999999998754
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.32 E-value=1.8e-12 Score=87.71 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=62.4
Q ss_pred ccccchhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHHH
Q psy1398 12 PMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVE 90 (102)
Q Consensus 12 yQkst~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~~ 90 (102)
-.++..--||+.+..||.|.. +..|++.+|.++|++..|.|+.++.++|..+|.|+||.||+++|+.+|.+-.+
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 22 ILRDNIQGITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp --------CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhhhhhccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 335555669999999999987 67899999999999999999999999999999999999999999999987543
No 16
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.30 E-value=4.6e-12 Score=87.01 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=61.5
Q ss_pred hhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHHHh
Q psy1398 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVEN 91 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~~~ 91 (102)
+.-||++...||.|.. +..|+++++.++|+++++.|+..+..||+..|.||||+||+.+|+.++.+-.+.
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 5679999999999998 789999999999999999999999999999999999999999999999876544
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.30 E-value=3.2e-12 Score=92.51 Aligned_cols=73 Identities=18% Similarity=0.043 Sum_probs=67.1
Q ss_pred cccccchhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHH
Q psy1398 11 KPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAES 88 (102)
Q Consensus 11 ~yQkst~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri 88 (102)
.|-..-++.||++|..|+.|+. +..|++++|.++|+++.|.|+..+.++|+..|.|+||+||+++|++++.+-
T Consensus 74 ~v~d~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 74 GVEDYDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TSTTCCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCccccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3444557789999999999998 889999999999999999999999999999999999999999999999763
No 18
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.20 E-value=2.4e-11 Score=77.87 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=61.4
Q ss_pred hcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 19 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 19 LIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
.+|..|+.++.+.+ |..+++.+|..+|-+-.|.++-++.++|..++.|+||.||+.+||+.|.+
T Consensus 6 ~lp~~~v~~iaes~-----Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISAESMKVIAESI-----GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCHHHHHHHHHHT-----TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 48999999999999 88899999999999999999999999999999999999999999999975
No 19
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.15 E-value=7.1e-11 Score=75.74 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=61.6
Q ss_pred hcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHH
Q psy1398 19 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAES 88 (102)
Q Consensus 19 LIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri 88 (102)
.+|++++.|++|+.. ++.+++.+|.+++++++|.|+..+...|+..|.|.||.||+.+|++.|.+.
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 589999999999884 368999999999999999999999999999999999999999999998763
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.15 E-value=4.1e-11 Score=86.69 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=61.9
Q ss_pred cccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHH
Q psy1398 20 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESV 89 (102)
Q Consensus 20 Ipk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~ 89 (102)
+|++|..||+|+.. ++.|++.+|-++|++++|.|+..+..+|+..|.|+||+||+++|+..+..-.
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l 70 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL 70 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 79999999999985 5699999999999999999999999999999999999999999999998543
No 21
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.14 E-value=1.2e-10 Score=74.16 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHH
Q psy1398 24 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESV 89 (102)
Q Consensus 24 pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~ 89 (102)
+..|+.++. |..++++++...|-|.+|.|..++.++|..+|.||||.||+.+|++||.+.+
T Consensus 6 ~i~~iLk~~-----G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 6 VIMSILKEL-----NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHT-----TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 455666655 7889999999999999999999999999999999999999999999997653
No 22
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=99.08 E-value=1.2e-10 Score=80.64 Aligned_cols=62 Identities=29% Similarity=0.388 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 24 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 24 pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
...|++++...+. +..++++++.+|-+.++.|+..+.+|+...|.||||+||+++|++|+.|
T Consensus 32 ~V~rIvke~gaer--~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 32 TVGCLCEEVALDK--EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHHH--TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 4567888874432 3459999999999999999999999999999999999999999999965
No 23
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=99.03 E-value=3.3e-10 Score=77.70 Aligned_cols=61 Identities=30% Similarity=0.383 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 25 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 25 F~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
+.|++++...+ .+.|++++++.+|-+.++.|..++.+|+...|.||||+||+.+|++|+.|
T Consensus 25 V~rI~~~~g~~--~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 25 TGCLCQDVAED--KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHHH--HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHhhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 55677766442 34799999999999999999999999999999999999999999999975
No 24
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=99.00 E-value=5.6e-10 Score=74.49 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=47.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 39 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 39 ~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
+..++++++.+|-|.++.|+..+.+|+...|.||||+||+++|++|+.|
T Consensus 30 g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 30 DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999965
No 25
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.94 E-value=1.8e-09 Score=79.76 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=64.6
Q ss_pred cccchhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHH
Q psy1398 13 MKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAES 88 (102)
Q Consensus 13 Qkst~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri 88 (102)
....++.+|+++..|++|+... +.|++.+|.++|+++++.|+.-+...|+..+.|.||+||+.+||..|..-
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 3456789999999999999942 58999999999999999999999999999999999999999999999763
No 26
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.91 E-value=2.7e-09 Score=74.74 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=61.5
Q ss_pred chhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHHH
Q psy1398 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVE 90 (102)
Q Consensus 16 t~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~~ 90 (102)
.++.+|+++..|++|+... ...+++.+|..+|++++|.|+..|...|+..|.|.||+||+.+|+..|..-.+
T Consensus 6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 4678999999999999843 46899999999999999999999999999999999999999999999876443
No 27
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.87 E-value=3.1e-09 Score=76.00 Aligned_cols=60 Identities=30% Similarity=0.413 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 26 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 26 ~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
.++|.+.+.+ .+..++++++.+|-+.++.|+..+..|+...|.||||.||+.+|+.|+.|
T Consensus 26 gkIvee~~~~--~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 26 GALAQDVAED--KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHH--HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHh--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4555555432 35789999999999999999999999999999999999999999999975
No 28
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.68 E-value=1.7e-08 Score=67.31 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=55.3
Q ss_pred hhhhhcc--cccchhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHH
Q psy1398 6 RERFQKP--MKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 83 (102)
Q Consensus 6 lrEIr~y--Qkst~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~ 83 (102)
+.||+.. .....+-+|.++..|+.|.- ...-|++.+|..++..++|.|+..+.+.|...|.|.||.||+.+|++
T Consensus 4 ~~~~~~~~~~~~~~~~lP~arIkrImK~~----~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~ 79 (97)
T 1n1j_B 4 MEEIRNLTVKDFRVQELPLARIKKIMKLD----EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIA 79 (97)
T ss_dssp ----------------CCHHHHHHHHTTS----TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHhcccCCcCCCcCCHHHHHHHHccC----ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHH
Confidence 4567664 33445556666666665543 23369999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy1398 84 LAAES 88 (102)
Q Consensus 84 La~ri 88 (102)
+|.+-
T Consensus 80 ~Av~~ 84 (97)
T 1n1j_B 80 MAITK 84 (97)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99643
No 29
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.44 E-value=5.1e-07 Score=62.20 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=58.0
Q ss_pred cccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 20 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 20 Ipk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
-+.+|..| |+.|...-....+++.+|..++..++|.|+..+.+.|+..|...||.||+++|+..|.+
T Consensus 39 ~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 39 IHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp CCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred cCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 46678877 44555544566799999999999999999999999999999999999999999999864
No 30
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=7.4e-07 Score=68.22 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhc-------ccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHHHh
Q psy1398 24 PFQRLVREIAQDF-------KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVEN 91 (102)
Q Consensus 24 pF~RLVrEI~~~~-------~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~~~ 91 (102)
+-..++|++.+-- .|.-|++.++.+.+.++.|.|+..+..||+..|-||+|+||++.|+.+|.+-.++
T Consensus 154 r~~~vLrD~i~i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 154 KYTSVLRDIIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp THHHHHHHHHHHTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhcccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 4556666665411 1788999999999999999999999999999999999999999999999987664
No 31
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.33 E-value=1.2e-06 Score=60.73 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=61.8
Q ss_pred hhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
.|-+|-.++.|+.++-- ...|++++|-..|-.+.|.+..+++|.|...|.|.|+.+|+++|+++|.+
T Consensus 20 gLqfPV~ri~R~Lk~~~----~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGH----PKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHHS----SSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcCc----cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 68899999999999861 26799999999999999999999999999999999999999999999965
No 32
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.29 E-value=1.4e-06 Score=60.68 Aligned_cols=67 Identities=24% Similarity=0.242 Sum_probs=61.5
Q ss_pred hhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
+|-+|-.++.|+.|+- ....|++++|-..|-.+.|.+..+++|.|...|.|+|+.+|+++|+++|.+
T Consensus 21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 6788999999998875 246799999999999999999999999999999999999999999999965
No 33
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.29 E-value=1e-06 Score=63.33 Aligned_cols=68 Identities=24% Similarity=0.243 Sum_probs=61.8
Q ss_pred hhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHH
Q psy1398 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAES 88 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri 88 (102)
.|.+|-.++.|+.|+- ....|++++|-..|-.+.|.+..+++|.|...|.|+|+.+|+++|+++|.+-
T Consensus 42 gLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 6888999999998875 2467999999999999999999999999999999999999999999999653
No 34
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.28 E-value=3e-06 Score=54.82 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=60.1
Q ss_pred hhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHH
Q psy1398 18 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAA 86 (102)
Q Consensus 18 lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ 86 (102)
-+++|--.+.||++|. +...+.+++-+.|.+.|++|+.+..+.|-.+|.|.|--||.++|++|..
T Consensus 4 ~vl~k~~L~~Lv~~id----p~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~L 68 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVD----PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 68 (76)
T ss_dssp CSSCHHHHHHHHHHHC----SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHH
T ss_pred ccccHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 3568889999999994 5788999999999999999999999999999999999999999999985
No 35
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.24 E-value=1.9e-06 Score=60.39 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=61.6
Q ss_pred hhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
+|-+|-.++.|+.++-. ...|++++|-..|-.+.|.+..+++|.|...|.|.++.+|+++|+++|.+
T Consensus 23 gLqfPV~rI~R~Lk~~~----~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGN----YAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHTT----SSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHccc----cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 68889999999998752 46799999999999999999999999999999999999999999999965
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.23 E-value=6e-07 Score=59.93 Aligned_cols=69 Identities=9% Similarity=0.100 Sum_probs=51.3
Q ss_pred chhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHH
Q psy1398 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAES 88 (102)
Q Consensus 16 t~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri 88 (102)
.++-+|-++..|+.|. -....|++.+|...+-.++|.|+..+.+.|..+|.|.||.||+++|++++.+-
T Consensus 8 ~~~~fPvaRIkrimK~----~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 8 YNARFPPARIKKIMQT----DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp --CCCCHHHHHHHHTT----STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred cCCCCChHHHHHHHHc----CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 3444455555555443 22336999999999999999999999999999999999999999999998543
No 37
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.22 E-value=1.7e-06 Score=60.55 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=61.5
Q ss_pred hhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHH
Q psy1398 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAES 88 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri 88 (102)
.|-+|-.++.|+.++-.. ...|++++|-..|-.+.|.+..+++|.|...|.|.|+.+|+++|+++|.+-
T Consensus 25 gLqfPV~ri~R~Lk~~~~---a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTT---SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSC---SSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHccc---chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 688899999999988711 135999999999999999999999999999999999999999999999653
No 38
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.15 E-value=2.4e-06 Score=60.01 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=61.1
Q ss_pred hhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
.|-+|-.++.|+.|+- ....|++++|-..|-.+.|.+..+++|.|...|.|.|+.+|+++|+++|.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 6788999999988874 246799999999999999999999999999999999999999999999965
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.97 E-value=6.8e-06 Score=60.50 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=61.3
Q ss_pred hhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
+|.+|-.++.|+.|+-.. ...|++++|-..|-.+.|.+..+++|.|...|.|+||.||+++|+++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~~---a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHAT---GRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHTTC---SSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcCc---cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 788999999999987511 23699999999999999999999999999999999999999999999965
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.92 E-value=3.8e-05 Score=53.74 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHH
Q psy1398 22 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESV 89 (102)
Q Consensus 22 k~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~ 89 (102)
+..|..-+..+......+.++++.|+..+-...+++...+..+|..++.|.||.||+.+|||.|.++.
T Consensus 32 ~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 32 KESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 34444444444444456789999999999999999999999999999999999999999999998764
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.90 E-value=4.3e-05 Score=53.66 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=57.8
Q ss_pred ccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHH
Q psy1398 21 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESV 89 (102)
Q Consensus 21 pk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~ 89 (102)
++..|..-+..+......+.++++.|+..+-...+++...+..+|..++.|.||.||+.+|||.|.++.
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 344455455555444456789999999999999999999999999999999999999999999998764
No 42
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.73 E-value=4e-05 Score=54.28 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHh-hhcCccccCcccHHHHHH
Q psy1398 21 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 21 pk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A-~HakRvTi~~kDi~La~r 87 (102)
..+|..|+ +.|++.-...-+++.+|..+++.|+|-|+..|.+.|..+| ...||.||..+|+..|..
T Consensus 18 ~~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 18 TFLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 34555554 4454433445689999999999999999999999999999 999999999999999865
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.55 E-value=0.00029 Score=51.75 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=57.0
Q ss_pred chHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHH
Q psy1398 23 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAES 88 (102)
Q Consensus 23 ~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri 88 (102)
-.|.--+..+......+..++++|+..+-....+.+..+...|..++.|.+|.|++.+|||.+.++
T Consensus 3 ~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 3 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp STTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 345555555555555678999999999999999999999999999999999999999999999875
No 44
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=90.03 E-value=0.32 Score=35.52 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=65.0
Q ss_pred hcccccchh--hcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 10 QKPMKSTEL--LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 10 r~yQkst~l--LIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
..|.|-.+. +++-.-|+|+.|+. .++=+.++=+.-+-+..|.-+..||.-|...|.--+|-.|.+.|+.+...
T Consensus 15 ~~~~~~~~Mm~vmg~~kferlFR~a-----agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKG 89 (171)
T 1r4v_A 15 KNYSKIETMLRPKGFDKLDHYFRTE-----LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKA 89 (171)
T ss_dssp ------CCTTSCTTHHHHHHHHHHH-----HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHH
T ss_pred ccHHHHHHHHhcCChHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 346666666 88999999999999 45667788888999999999999999999999999999999999998887
Q ss_pred HHHhhc
Q psy1398 88 SVENAR 93 (102)
Q Consensus 88 i~~~~~ 93 (102)
+.+.++
T Consensus 90 lqEsi~ 95 (171)
T 1r4v_A 90 LEEHIK 95 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 45
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=85.73 E-value=0.91 Score=32.36 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=60.1
Q ss_pred hcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHHHHHhhc
Q psy1398 19 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVENAR 93 (102)
Q Consensus 19 LIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~~~~~ 93 (102)
+|+-.-|+|+.|+.+ ++=+.++=+.-+-+..|.-+..||.-|+..|..-+|-.|.+.|+.+...+.+.++
T Consensus 2 vm~~~~~e~lFR~aa-----~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkGlqesi~ 71 (148)
T 1wwi_A 2 LMKVAEFERLFRQAA-----GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKGLQETLQ 71 (148)
T ss_dssp CSCHHHHHHHHHHHH-----CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHHHHHHH
Confidence 466677999999984 4666677778888999999999999999999999999999999988887777654
No 46
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=80.89 E-value=5.1 Score=25.78 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=47.4
Q ss_pred hhhcccchHHHHHHHHHhhcc-cccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHH
Q psy1398 17 ELLIRKLPFQRLVREIAQDFK-TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 84 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~-~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~L 84 (102)
+.-||+--..||.+ ..|+ ...|++++|+.+..+..+-|..+-..-|..-|.--+-.+|.++|++=
T Consensus 10 ~~~i~~~li~ril~---~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 10 GSGFRKELVSRLLH---LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp -CCCCHHHHHHHHH---TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCCCCHHHHHHHHH---HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 44567655666665 3354 67899999999999999998888777777666545566788888763
No 47
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=80.80 E-value=5.2 Score=35.33 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=54.9
Q ss_pred hhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 17 ~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
+|.+|-.-..|+.+.. ...|+.+.|-.-|-.+.|-...+++|-|...|...++..|.++|+++|.+
T Consensus 102 ~l~~pv~~~~~~l~~~-----~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEV-----LGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCSSCHHHHHHHHHHH-----HCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CccccHHHHHHHhhcc-----cccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 5655555555555333 45799999999999999999999999999999999999999999999964
No 48
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=75.12 E-value=11 Score=23.94 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=46.2
Q ss_pred hcccchHHHHHHHHHhhcc-cccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHH
Q psy1398 19 LIRKLPFQRLVREIAQDFK-TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 84 (102)
Q Consensus 19 LIpk~pF~RLVrEI~~~~~-~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~L 84 (102)
-||+--..||.++. |+ ...|++++|+.+..+..+-|..+-+.-|..-|.--+-..|.++|++=
T Consensus 8 ~~~~~lI~ril~~~---f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 8 GFRKETVERLLRLH---FRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp CCCHHHHHHHHHHH---CCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCHHHHHHHHHHH---hccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 35555556666653 44 57899999999999999888888887777766545556788888763
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=67.97 E-value=23 Score=25.55 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=46.8
Q ss_pred cccccchHHHHHHHHHHHH-------HHHHHhHhHHHHhhhcCccccCcccHHHHHHHHHhhccc
Q psy1398 38 TDLRFQSSAVMALQEASEA-------YLVGLFEDTNLCAIHAKRVTIMPKDIQLAAESVENARLR 95 (102)
Q Consensus 38 ~~~R~~~~Al~aLQeaaE~-------~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri~~~~~~~ 95 (102)
....+++++++.|.+.+.. .+..+.+.|...|.-.++.+|+.+|++-+....-.-++.
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 3568999999999888764 567788888888888899999999999888776655543
No 50
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.06 E-value=31 Score=25.21 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=44.2
Q ss_pred cccccchHHHHHHHHHHHH----HHHHHhHhHHHHhhhcCccccCcccHHHHHHH
Q psy1398 38 TDLRFQSSAVMALQEASEA----YLVGLFEDTNLCAIHAKRVTIMPKDIQLAAES 88 (102)
Q Consensus 38 ~~~R~~~~Al~aLQeaaE~----~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri 88 (102)
....+++++++.|.+.+.. ++.++.+.|...|.-.++.+|+.+|++-+...
T Consensus 275 ~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 275 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3567999999999999883 88899999999998889999999999988764
No 51
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=62.78 E-value=7.9 Score=25.29 Aligned_cols=59 Identities=12% Similarity=0.340 Sum_probs=37.9
Q ss_pred cccchHHHHHHHHHhhcc-cccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCc-----------cccCcccHHHH
Q psy1398 20 IRKLPFQRLVREIAQDFK-TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR-----------VTIMPKDIQLA 85 (102)
Q Consensus 20 Ipk~pF~RLVrEI~~~~~-~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakR-----------vTi~~kDi~La 85 (102)
||+--..||.. ..|+ .+.|++.+|+.+.++..+-|. ..|+.=|++-|+ ..+..+|.+=.
T Consensus 2 ip~~llaRIL~---~~F~~~kTrIt~da~~lv~kY~diFV----rEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEki 72 (88)
T 3v9r_B 2 LSKEALIKILS---QNEGGNDMKIADEVVPMIQKYLDIFI----DEAVLRSLQSHKDINGERGDKSPLELSHQDLERI 72 (88)
T ss_dssp CCSHHHHHHHT---TTSCSSCCEECTTTHHHHHHHHHHHH----HHHHHHHHHHHHCC-----------CCHHHHHHH
T ss_pred CCHHHHHHHHH---HHhCCCCceecHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcccccCCCCCeeehHHHHHH
Confidence 66766777777 3354 788999999999888555544 445554454433 36777776543
No 52
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=61.16 E-value=13 Score=23.46 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=40.6
Q ss_pred hcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhh
Q psy1398 19 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 71 (102)
Q Consensus 19 LIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~H 71 (102)
++.+.|.++=+.||+.+++ =.-+++++...+.-|+|+.|-+++|.-...|.|
T Consensus 2 fL~~~~Lqkri~~I~~k~g-l~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 2 FLLQAPLQRRILEIGKKHG-ITELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp CSCHHHHHHHHHHHHHTTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHhcC-CCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999988754 234789999999999999999999988887777
No 53
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=60.74 E-value=8.5 Score=26.30 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=27.8
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhHhHHH
Q psy1398 38 TDLRFQSSAVMALQEASEAYLVGLFEDTNL 67 (102)
Q Consensus 38 ~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~ 67 (102)
|..|+++++-+.+.++.|.|+.++..||+.
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav~ 90 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVT 90 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999864
No 54
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=53.02 E-value=54 Score=26.59 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=46.2
Q ss_pred HHHHHHHhhcc---cccccchHHHHHHHHHH-------------HHHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 27 RLVREIAQDFK---TDLRFQSSAVMALQEAS-------------EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 27 RLVrEI~~~~~---~~~R~~~~Al~aLQeaa-------------E~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
.+++.+.+.+. ....++.+|+..|.+.+ ...+.++.+.|...|...++..|+.+|++-|..
T Consensus 297 ~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 297 KLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 34444444333 34589999999988765 457788999998888888999999999998864
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=35.73 E-value=35 Score=20.02 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=26.4
Q ss_pred HHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 57 YLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 57 ~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
-+..+..+|.+.|+..++..|+.+|+.-|..
T Consensus 41 Di~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 41 EVKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 4777888888889999999999999988864
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=33.02 E-value=1.3e+02 Score=21.45 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=39.5
Q ss_pred ccccchHHHHHHHHHHH------HHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 39 DLRFQSSAVMALQEASE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 39 ~~R~~~~Al~aLQeaaE------~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
+..+++++++.+.+.+. -++..+.+.+...|...++.+|+.+|++-+..
T Consensus 220 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 220 PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 46788999999998888 46778888888888777888899999887654
No 57
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=28.85 E-value=22 Score=24.79 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=25.5
Q ss_pred ccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHH
Q psy1398 21 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNL 67 (102)
Q Consensus 21 pk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~ 67 (102)
|.=||...+++|+.+..+-....+..=-. -..-|.++|++-+.|..
T Consensus 6 ~~DPF~d~l~~iM~~Ie~~~~l~p~~dfG-TQ~YEQwvV~~ek~aa~ 51 (138)
T 3ts9_A 6 RENPFKEKLLEIMASIQTYCQKSPMSDFG-TQHYEQWAIQMEKKAAK 51 (138)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCCCSSCTT-SHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCCCCCCc-chHHHHHHHHHHHHHHH
Confidence 44599999999988753211111100000 13467777777777654
No 58
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=27.69 E-value=57 Score=19.39 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=22.9
Q ss_pred HHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 57 YLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 57 ~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
-+..+-.+|.+.|++.++..|+.+|+.-+..
T Consensus 36 Di~~l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 36 VIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 3455566677777787888999999887753
No 59
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=27.27 E-value=1.8e+02 Score=22.40 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=41.6
Q ss_pred ccccchHHHHHHHHHH-HH---HHHHHhHhHHHHhhhcCccccCcccHHHHHHH
Q psy1398 39 DLRFQSSAVMALQEAS-EA---YLVGLFEDTNLCAIHAKRVTIMPKDIQLAAES 88 (102)
Q Consensus 39 ~~R~~~~Al~aLQeaa-E~---~lv~lfe~a~~~A~HakRvTi~~kDi~La~ri 88 (102)
...++++++..+-..+ +- ....+++.|...|.-.++-+|+.+|++-+..+
T Consensus 383 ~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 383 GINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 4568899998888877 42 77888999988998889999999999988765
No 60
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=26.91 E-value=55 Score=19.87 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=24.8
Q ss_pred HHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 57 YLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 57 ~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
=+..+..+|.+.|++.++..|+.+|+.-|..
T Consensus 39 Dl~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 39 ELRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 3666777777888888889999999988864
No 61
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=25.62 E-value=1.3e+02 Score=18.99 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=52.9
Q ss_pred cccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCc-cccCcccHHHHHHHHH
Q psy1398 20 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR-VTIMPKDIQLAAESVE 90 (102)
Q Consensus 20 Ipk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakR-vTi~~kDi~La~ri~~ 90 (102)
+||....||+..+ .+..++.+.+.++.-.+-.|+.++-|.|......-+. -=|.++-+.-|.+-..
T Consensus 17 f~k~~vKrl~~~~-----~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 17 FPKAAIKRLIQSI-----TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCHHHHHHHHHHH-----HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 6777788888777 3567889999999999999999999999988876543 3588888888865443
No 62
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.32 E-value=60 Score=21.31 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHhhhcCccc
Q psy1398 45 SAVMALQEASEAYLVGLFEDTNLCAIHAKRVT 76 (102)
Q Consensus 45 ~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvT 76 (102)
.....+..-.|+.-.+||+.||.+-.-++|.+
T Consensus 47 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~ 78 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLFDEANNMVADARKEK 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777889999999999999988876554
No 63
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=24.79 E-value=69 Score=18.84 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=24.4
Q ss_pred HHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 57 YLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 57 ~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
-+..+..+|.+.|+..++..|+.+|+.-+..
T Consensus 39 Di~~l~~eA~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 39 DINSICQESGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp HHHHHHHHHHHGGGTSCCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 4556667778888888889999999887754
No 64
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=23.19 E-value=69 Score=26.26 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=37.3
Q ss_pred hhhhhcccc-----cchhhcccchHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHhHh
Q psy1398 6 RERFQKPMK-----STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFED 64 (102)
Q Consensus 6 lrEIr~yQk-----st~lLIpk~pF~RLVrEI~~~~~~~~R~~~~Al~aLQeaaE~~lv~lfe~ 64 (102)
..||+.|-+ ...+.+|-.+|..||++-.. +|...|+.+++.+.| ++...+..
T Consensus 405 ~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~------~l~~Pa~~~v~~V~~-~v~~~~~~ 461 (608)
T 3szr_A 405 SRKIQKFENQAAAAELPGFVNYRTFETIVKQQIK------ALEEPAVDMLHTVTD-MVRLAFTD 461 (608)
T ss_dssp HHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHG------GGHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-HHHHHHHH
Confidence 367775543 23568899999999999854 677888888888776 55555543
No 65
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=22.82 E-value=1.7e+02 Score=19.23 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=32.7
Q ss_pred ccccchHHHHHHHHHHHH---HHHHHhHhHHHHhhhcCccccCcccHHHHH
Q psy1398 39 DLRFQSSAVMALQEASEA---YLVGLFEDTNLCAIHAKRVTIMPKDIQLAA 86 (102)
Q Consensus 39 ~~R~~~~Al~aLQeaaE~---~lv~lfe~a~~~A~HakRvTi~~kDi~La~ 86 (102)
...++.++++.|.+.++- .+..+.+.+...|...++ +|+.+|++-+.
T Consensus 191 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l 240 (242)
T 3bos_A 191 GLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEML 240 (242)
T ss_dssp TCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHh
Confidence 467889999988887763 556666666666655454 58888887653
No 66
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.16 E-value=70 Score=22.52 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHhhhcCccc--cCcccHHHHHHHHHh
Q psy1398 45 SAVMALQEASEAYLVGLFEDTNLCAIHAKRVT--IMPKDIQLAAESVEN 91 (102)
Q Consensus 45 ~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvT--i~~kDi~La~ri~~~ 91 (102)
.....+..-.|+.-.+||+.||.+-.-|++.+ +..+.-+|-..+.++
T Consensus 79 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 79 EEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 127 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777889999999999999988877664 344455555555554
No 67
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=21.80 E-value=1.7e+02 Score=18.84 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=28.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHH
Q psy1398 39 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 85 (102)
Q Consensus 39 ~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La 85 (102)
...++.+++..|.+.+.-..-.+..-...++..++. +|+.+|++-+
T Consensus 202 ~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~-~i~~~~v~~~ 247 (250)
T 1njg_A 202 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAM 247 (250)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS-SBCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc-eecHHHHHHH
Confidence 457888888888888765443333333333444443 7888887654
No 68
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=21.30 E-value=87 Score=19.03 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=23.2
Q ss_pred HHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 57 YLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 57 ~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
-|..+-.+|.+.|+...+..|+.+|+.-|..
T Consensus 49 DL~~l~~eAa~~alr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 49 EVKGVCTEAGMYALRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3555666777777777788999999887764
No 69
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.61 E-value=2.3e+02 Score=20.05 Aligned_cols=49 Identities=10% Similarity=0.048 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHHH------HHHHHHhHhHHHHhhhcCccccCcccHHHHHH
Q psy1398 39 DLRFQSSAVMALQEASE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87 (102)
Q Consensus 39 ~~R~~~~Al~aLQeaaE------~~lv~lfe~a~~~A~HakRvTi~~kDi~La~r 87 (102)
..-+..+++..+.+.+. ..+..+++.+...|...++.+|+.+|++-+..
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 216 PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 46788999998888887 24566777777777766777888899886643
No 70
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=20.36 E-value=1.8e+02 Score=18.56 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=29.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhHhHHHHhhhcCccccCcccHHHHH
Q psy1398 39 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAA 86 (102)
Q Consensus 39 ~~R~~~~Al~aLQeaaE~~lv~lfe~a~~~A~HakRvTi~~kDi~La~ 86 (102)
...++.+++..|.+.+.-.+-.+......++..+ .+|+.+|++-+.
T Consensus 178 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~ 223 (226)
T 2chg_A 178 GVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQIT 223 (226)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHh
Confidence 4558888888888777654444444444444444 478888887664
Done!