RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1398
(102 letters)
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 125 bits (316), Expect = 7e-40
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 14 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 73
KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK
Sbjct: 16 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 75
Query: 74 RVTIMPKDIQLA 85
RVTIMPKDIQLA
Sbjct: 76 RVTIMPKDIQLA 87
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 50.2 bits (120), Expect = 8e-10
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 10 QKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA 69
+ L + +R+++ R S AV + L E A
Sbjct: 70 EGVEDYDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICRATEELGEKAAEYA 124
Query: 70 IHAKRVTIMPKDIQLA 85
R T+ +D++ A
Sbjct: 125 DEDGRKTVQGEDVEKA 140
Score = 29.8 bits (67), Expect = 0.029
Identities = 7/66 (10%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 24 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 83
+R+ R+ + R A + + + + + T+M + ++
Sbjct: 6 AIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLK 61
Query: 84 LAAESV 89
A+ +
Sbjct: 62 ALADVL 67
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 39.7 bits (93), Expect = 2e-06
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 23 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82
LP + R I + R A L E E Y + + + A HA R T+ +DI
Sbjct: 3 LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60
Query: 83 QLAAES 88
+LA +S
Sbjct: 61 KLAIKS 66
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 35.5 bits (82), Expect = 8e-05
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 41 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAAE 87
R A +AL + E + + A HA R TI +DI+LA +
Sbjct: 20 RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 66
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 35.6 bits (82), Expect = 1e-04
Identities = 13/68 (19%), Positives = 25/68 (36%)
Query: 23 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82
LP + R + + A +QE ++ + + + KR TI +DI
Sbjct: 3 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62
Query: 83 QLAAESVE 90
A ++
Sbjct: 63 LFAMSTLG 70
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 35.9 bits (83), Expect = 2e-04
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 5 ARERFQKPMKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFED 64
A+ +K + L + L++E+ + + + E + +
Sbjct: 85 AQSAIEKRKRRNPLSLPVEKIHPLLKEVLGY-----KIDHQVSVYIVAVLEYISADILKL 139
Query: 65 TNLCAIHAKRVTIMPKDIQLA 85
+ + I +DI++A
Sbjct: 140 AGNYVRNIRHYEITKQDIKVA 160
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 33.7 bits (77), Expect = 0.001
Identities = 10/68 (14%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 23 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82
+P + ++ ++ ++R + A + ++ + + N +++ TI P+ +
Sbjct: 5 IPRAA-INKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 63
Query: 83 QLAAESVE 90
A ES+
Sbjct: 64 IQALESLG 71
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 30.5 bits (69), Expect = 0.007
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 22 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 81
+ P R +++I Q + + ++ + + A E +L L + T+
Sbjct: 2 RFPPAR-IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSH 60
Query: 82 IQLAAE 87
++ E
Sbjct: 61 LKQCIE 66
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 31.0 bits (70), Expect = 0.008
Identities = 12/67 (17%), Positives = 22/67 (32%)
Query: 24 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 83
P + R I + A A+ A+ + + + + A TI KDI
Sbjct: 1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDIL 60
Query: 84 LAAESVE 90
++
Sbjct: 61 QTLTELD 67
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 30.5 bits (69), Expect = 0.009
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 41 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 85
R + + +L + D HAKR T+ D+ A
Sbjct: 26 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYA 70
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 68
Score = 29.6 bits (67), Expect = 0.014
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 27 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAA 86
+++ I ++ ++ V L E + Y+ + +D + A HA++ TI D++LA
Sbjct: 5 QVIMSILKELNVQ-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLAT 63
Query: 87 ES 88
E
Sbjct: 64 EV 65
>d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 220
Score = 26.0 bits (56), Expect = 0.77
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 1 MNWVARERFQKPMKSTELLIRKLPF 25
+ W A + + + E+ IR + F
Sbjct: 196 IEWRAWKGYHYSLPQVEMKIRPVEF 220
>d1fzda_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo
sapiens), fibrinogen-420, alpha-E [TaxId: 9606]}
Length = 197
Score = 25.2 bits (54), Expect = 1.7
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 1 MNWVARERFQKPMKSTELLIRKLPFQ 26
+ WV+ +++ + IR L Q
Sbjct: 172 VVWVSFRGADYSLRAVRMKIRPLVTQ 197
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH)
{Lyme disease spirochete (Borrelia burgdorferi) [TaxId:
139]}
Length = 388
Score = 23.2 bits (49), Expect = 9.2
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 73 KRVTIMPKDIQLAAESVENARLRIRLISTP 102
++ +++P ++ L + +N L I +S+
Sbjct: 18 RKSSVLPSEVSLKTQLTKNISLNIPFLSSA 47
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
1314]}
Length = 365
Score = 23.1 bits (49), Expect = 9.5
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 73 KRVTIMPKDIQLAAESVENARLRIRLISTP 102
++P ++ L + +N L I +I+
Sbjct: 22 AESHVLPNEVDLKTKLADNLTLNIPIITAA 51
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate
dehydrogenase (IMPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 330
Score = 23.1 bits (49), Expect = 9.6
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 73 KRVTIMPKDIQLAAESVENARLRIRLISTP 102
+ ++PKD+++ R+ I L+S
Sbjct: 15 QYSEVLPKDVKIDTRLTRQIRINIPLVSAA 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.133 0.370
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 344,033
Number of extensions: 12870
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 20
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)