BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13980
         (532 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V64|D Chain D, Crystallographic Structure Of The Conformational Dimer Of
           The Spindle Assembly Checkpoint Protein Mad2.
 pdb|2V64|E Chain E, Crystallographic Structure Of The Conformational Dimer Of
           The Spindle Assembly Checkpoint Protein Mad2.
 pdb|2V64|H Chain H, Crystallographic Structure Of The Conformational Dimer Of
           The Spindle Assembly Checkpoint Protein Mad2
          Length = 207

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 388 AGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDLTKYC 429
           +G+   +A ++E+ ++I +  A +   PLL  +CS DL  Y 
Sbjct: 118 SGEKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYT 159


>pdb|3C9A|A Chain A, High Resolution Crystal Structure Of Argos Bound To The
           Egf Domain Of Spitz
 pdb|3C9A|B Chain B, High Resolution Crystal Structure Of Argos Bound To The
           Egf Domain Of Spitz
 pdb|3CGU|A Chain A, Crystal Structure Of Unliganded Argos
 pdb|3CGU|B Chain B, Crystal Structure Of Unliganded Argos
          Length = 223

 Score = 30.0 bits (66), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 206 FHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPAKTLTCLKRMK 250
           +  +++ +G+ S  Y  L  C P+ +  C  ++P K  T  KR +
Sbjct: 123 YLTKREPIGNDSPGYRYLFACSPLTRLRCQRKQPCKLFTVRKRQE 167



 Score = 29.6 bits (65), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 256 FHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKR 298
           +  +++ +G+ S  Y  L  C P+ +  C  ++P K  T  KR
Sbjct: 123 YLTKREPIGNDSPGYRYLFACSPLTRLRCQRKQPCKLFTVRKR 165


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,618,324
Number of Sequences: 62578
Number of extensions: 563706
Number of successful extensions: 1242
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 12
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)