Query psy13980
Match_columns 532
No_of_seqs 229 out of 331
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 16:31:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1afo_A Glycophorin A; integral 85.5 0.48 1.6E-05 32.9 2.4 26 500-525 15-40 (40)
2 2klu_A T-cell surface glycopro 50.1 11 0.00036 29.4 2.7 19 500-518 9-27 (70)
3 3arc_X Photosystem II PSBX pro 35.7 30 0.001 24.1 2.9 24 497-520 6-29 (39)
4 2f93_B Sensory rhodopsin II tr 28.5 34 0.0012 29.7 2.9 28 498-525 60-87 (122)
5 2knc_B Integrin beta-3; transm 23.5 36 0.0012 27.2 2.0 18 502-519 11-28 (79)
6 1p7b_A Integral membrane chann 20.9 94 0.0032 31.4 4.9 37 482-518 45-81 (333)
7 3bz1_X Photosystem II PSBX pro 20.5 58 0.002 23.8 2.3 28 496-524 15-42 (50)
8 3spc_A Inward-rectifier K+ cha 19.9 73 0.0025 32.4 3.8 34 485-518 32-65 (343)
9 3sya_A G protein-activated inw 17.8 1E+02 0.0035 31.3 4.4 34 485-518 30-63 (340)
10 2k21_A Potassium voltage-gated 17.4 38 0.0013 29.7 0.9 30 500-529 53-82 (138)
No 1
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=85.55 E-value=0.48 Score=32.92 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccc
Q psy13980 500 YLAGLLISIVGVIFLMGLVCGRVANR 525 (532)
Q Consensus 500 ~~~~~~~~~~~~~~~~g~~~gr~t~r 525 (532)
.||++.++++|.|+++..+-+|++|+
T Consensus 15 II~~vmaGiIG~IllI~y~I~rl~Kk 40 (40)
T 1afo_A 15 IIFGVMAGVIGTILLISYGIRRLIKK 40 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 47889999999999999999999884
No 2
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=50.14 E-value=11 Score=29.37 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy13980 500 YLAGLLISIVGVIFLMGLV 518 (532)
Q Consensus 500 ~~~~~~~~~~~~~~~~g~~ 518 (532)
.+|++|.+++++++++|++
T Consensus 9 ~~LivlGg~~~lll~~glc 27 (70)
T 2klu_A 9 MALIVLGGVAGLLLFIGLG 27 (70)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 4558999999999988864
No 3
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=35.75 E-value=30 Score=24.07 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcc
Q psy13980 497 ARRYLAGLLISIVGVIFLMGLVCG 520 (532)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~g~~~g 520 (532)
-+|||++++++.+.++.+.|-+-+
T Consensus 6 L~nFl~Sl~aG~vvvv~i~~ali~ 29 (39)
T 3arc_X 6 LKGFFIGLLSGAVVLGLTFAVLIA 29 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhee
Confidence 379999999998877777766655
No 4
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=28.48 E-value=34 Score=29.73 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccccccc
Q psy13980 498 RRYLAGLLISIVGVIFLMGLVCGRVANR 525 (532)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~g~~~gr~t~r 525 (532)
++++++++..+++.|.++|++.||=|-+
T Consensus 60 ~~~liil~~v~lv~LgvvG~~lGR~t~~ 87 (122)
T 2f93_B 60 VSAILGLIILLGINLGLVAATLGGDTAA 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6788999999999999999999997765
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.53 E-value=36 Score=27.19 Aligned_cols=18 Identities=39% Similarity=0.767 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy13980 502 AGLLISIVGVIFLMGLVC 519 (532)
Q Consensus 502 ~~~~~~~~~~~~~~g~~~ 519 (532)
++++.++++.|+|+|+++
T Consensus 11 ~~Iv~gvi~gilliGlll 28 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAA 28 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 444455566666666643
No 6
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=20.95 E-value=94 Score=31.39 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=31.7
Q ss_pred CCcHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhh
Q psy13980 482 PSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLV 518 (532)
Q Consensus 482 ~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~g~~ 518 (532)
.-.+.|++..+...+.+..++++++++++++++++++
T Consensus 45 ~~~~~d~~~~~l~~~~~~ll~~~~~~~l~~~l~fall 81 (333)
T 1p7b_A 45 ASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALL 81 (333)
T ss_dssp CCHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999998888888888888888776
No 7
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=20.52 E-value=58 Score=23.81 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcccccc
Q psy13980 496 PARRYLAGLLISIVGVIFLMGLVCGRVAN 524 (532)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~g~~~gr~t~ 524 (532)
--+|||++++++.+.++.+.|-+-+ |++
T Consensus 15 SL~NFl~SlvaG~vVvv~i~~aLi~-VSq 42 (50)
T 3bz1_X 15 SLKGFFIGLLSGAVVLGLTFAVLIA-ISQ 42 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhee-eec
Confidence 3489999999999877777776665 443
No 8
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=19.85 E-value=73 Score=32.42 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhh
Q psy13980 485 LQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLV 518 (532)
Q Consensus 485 ~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~g~~ 518 (532)
++|++..+..-+-+..|++.+++++++.|++|++
T Consensus 32 l~Dif~tlv~l~Wr~~ll~f~~~y~~swl~Fall 65 (343)
T 3spc_A 32 IADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLI 65 (343)
T ss_dssp --CHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHeeCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999888888888999998988887
No 9
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=17.82 E-value=1e+02 Score=31.25 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhh
Q psy13980 485 LQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLV 518 (532)
Q Consensus 485 ~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~g~~ 518 (532)
++|++..++.-|-|..|++.++.+++..|++|++
T Consensus 30 ~~D~f~tlv~l~Wr~~llif~~~y~~swl~Fa~l 63 (340)
T 3sya_A 30 LTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMI 63 (340)
T ss_dssp HHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHheeCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999898877
No 10
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=17.44 E-value=38 Score=29.66 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccchhhh
Q psy13980 500 YLAGLLISIVGVIFLMGLVCGRVANRSAAA 529 (532)
Q Consensus 500 ~~~~~~~~~~~~~~~~g~~~gr~t~r~~~~ 529 (532)
||.+++++++.-+|++|++.|-+-.|++|-
T Consensus 53 ylYIL~vmgffgff~~GImLsYiRSKk~E~ 82 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIRSKKLEH 82 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eehHHHHHHHHHHHHHHHHHHHhHhhhccc
Confidence 455555555556788999999664444443
Done!