Query psy13980
Match_columns 532
No_of_seqs 229 out of 331
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 16:31:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13980.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13980hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p7ba2 f.14.1.1 (A:36-151) In 41.0 17 0.0013 28.5 5.2 41 478-518 6-46 (116)
2 d2axti1 f.23.37.1 (I:1-35) Pho 17.3 59 0.0043 20.2 3.1 19 504-522 10-28 (35)
3 d2axtz1 f.17.5.1 (Z:1-62) Phot 16.7 54 0.0039 23.2 3.3 23 496-518 35-57 (62)
4 d1xl4a2 f.14.1.1 (A:23-138) In 11.7 36 0.0026 26.5 1.2 33 486-518 13-45 (116)
5 d1oeda_ f.36.1.1 (A:) Acetylch 10.8 56 0.0041 28.1 2.4 22 501-522 199-220 (227)
6 d2fp1a1 a.130.1.4 (A:35-199) S 10.3 83 0.006 26.3 3.3 43 392-434 122-164 (165)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 10.1 99 0.0072 18.2 2.5 12 509-520 10-21 (32)
8 d2hp8a_ a.17.1.1 (A:) p8-MTCP1 10.0 83 0.006 22.6 2.6 29 57-90 13-41 (68)
9 d2gnoa1 a.80.1.1 (A:209-306) g 8.7 2.3E+02 0.017 20.6 4.8 31 482-512 21-51 (98)
10 d2itba1 a.25.1.7 (A:3-201) Put 6.7 4.2E+02 0.031 22.5 6.5 85 398-504 72-157 (199)
No 1
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=41.05 E-value=17 Score=28.53 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=31.8
Q ss_pred hccCCCcHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhh
Q psy13980 478 LISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLV 518 (532)
Q Consensus 478 ~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~g~~ 518 (532)
..+|+..+.|++..+++.|-+..++.++..++.+.++++++
T Consensus 6 ~~~p~~~~rd~~~~ll~~~~~~~l~~~~~~~~~~~~~fa~~ 46 (116)
T d1p7ba2 6 YGMPASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALL 46 (116)
T ss_dssp EECCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688899999999999998888877777776666655443
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.25 E-value=59 Score=20.18 Aligned_cols=19 Identities=16% Similarity=0.649 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhcccc
Q psy13980 504 LLISIVGVIFLMGLVCGRV 522 (532)
Q Consensus 504 ~~~~~~~~~~~~g~~~gr~ 522 (532)
....|++.||++|.+-+--
T Consensus 10 ~vV~fFv~lFiFGFLSnDP 28 (35)
T d2axti1 10 IVVTFFVLLFVFGFLSGDP 28 (35)
T ss_dssp HHHHHHHHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHhhccCCC
Confidence 3445667789999887543
No 3
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.71 E-value=54 Score=23.25 Aligned_cols=23 Identities=4% Similarity=0.143 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh
Q psy13980 496 PARRYLAGLLISIVGVIFLMGLV 518 (532)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~g~~ 518 (532)
-+||.+++-...-++++|+.|++
T Consensus 35 ~sK~lvfsG~~~W~~LV~lvgil 57 (62)
T d2axtz1 35 RSKQLIFLGSGLWIALVLVVGVL 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEchhHHHHHHHHHHhh
Confidence 37899999999999999999986
No 4
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=11.74 E-value=36 Score=26.45 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=24.3
Q ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhh
Q psy13980 486 QDMYGAVQRSPARRYLAGLLISIVGVIFLMGLV 518 (532)
Q Consensus 486 ~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~g~~ 518 (532)
+|++..+++-|.+.+++.+++.++.+++++|+.
T Consensus 13 ~D~f~~ll~~~~~~~~~~~~~~~~~~~~~fa~~ 45 (116)
T d1xl4a2 13 DDHYHDLLTVSWPVFITLITGLYLVTNALFALA 45 (116)
T ss_dssp CSSTTHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666778888888888887777777766654
No 5
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=10.79 E-value=56 Score=28.12 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccc
Q psy13980 501 LAGLLISIVGVIFLMGLVCGRV 522 (532)
Q Consensus 501 ~~~~~~~~~~~~~~~g~~~gr~ 522 (532)
++.+++.++.++..+|+++||.
T Consensus 199 i~~~~F~l~~ii~~i~if~~~~ 220 (227)
T d1oeda_ 199 ILLCVFMLICIIGTVSVFAGRL 220 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666777789999984
No 6
>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.33 E-value=83 Score=26.32 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCHhHHHHHHHHHHhccccccCChHHHHhcHHHHHhhcccCCC
Q psy13980 392 RDRACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAP 434 (532)
Q Consensus 392 ~~~~C~~ev~~~l~e~~~Di~lDP~L~~aC~~Di~~~C~~v~~ 434 (532)
-.+.|..+|.....+...-.++||.=..|=..-+.++|+.++|
T Consensus 122 ~~~~C~~~l~~a~~~~~~~~~ld~~~~~aL~~Al~~~C~~~~~ 164 (165)
T d2fp1a1 122 SAPSCAAQLDRAKRDIVRSRHLDSLYQRALTTATQSYCQALPP 164 (165)
T ss_dssp TSTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTSSCCCCC
T ss_pred CCCccHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcccCC
Confidence 4788999999998888788899998888888889999999987
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.12 E-value=99 Score=18.25 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=4.6
Q ss_pred HHHHHHHhhhcc
Q psy13980 509 VGVIFLMGLVCG 520 (532)
Q Consensus 509 ~~~~~~~g~~~g 520 (532)
|.+-+++|+--|
T Consensus 10 vfialffgiavg 21 (32)
T d2e74e1 10 VFIALFFGIAVG 21 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 333333444333
No 8
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.95 E-value=83 Score=22.61 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=21.3
Q ss_pred chhhHhhhccCCCCCCCccccHHHHHHHHHHHhc
Q psy13980 57 DVMDCLVQHKNSPELRGEPKCRQSIEHFQLVTAG 90 (532)
Q Consensus 57 ~vl~CL~~~k~~~~m~~~~~C~~~v~~~q~~~~~ 90 (532)
.|-.||..|.++ .. +|...|..+-.=-.+
T Consensus 13 ~IQ~CLq~N~Y~---Es--kC~~~i~~L~~CC~~ 41 (68)
T d2hp8a_ 13 EIQKCLQANSYM---ES--KCQAVIQELRKCCAQ 41 (68)
T ss_dssp HHHHHHHHTTTC---TT--TTHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCC---HH--HHHHHHHHHHHHHHH
Confidence 578999999999 22 899999885433333
No 9
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=8.66 E-value=2.3e+02 Score=20.57 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHhCchhHHHHHHHHHHHHHH
Q psy13980 482 PSSLQDMYGAVQRSPARRYLAGLLISIVGVI 512 (532)
Q Consensus 482 ~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~ 512 (532)
|.+|=+|.+||.+.-.++--++.|--++-+|
T Consensus 21 ~k~ff~lfdqv~ntitg~daflliq~~~rii 51 (98)
T d2gnoa1 21 SKEFFALFDQVTNTITGKDAFLLIQRLTRII 51 (98)
T ss_dssp GGGHHHHHHHHHHHSCTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 7899999999988766655444444444443
No 10
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=6.72 E-value=4.2e+02 Score=22.45 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=52.9
Q ss_pred HHHHHHHHhccccccCChHHHHhcHHHHHhhcccCCCCCchHHHHHHHHHhccccCCccchHhHHHHHHHHH-HHHHHHH
Q psy13980 398 EEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLLARI-DMFRNAE 476 (532)
Q Consensus 398 ~ev~~~l~e~~~Di~lDP~L~~aC~~Di~~~C~~v~~G~Grvl~CL~~~l~~~~~~~~~L~~~C~~~L~~r~-~~~~~a~ 476 (532)
+||..+++.. +|.+.|.-...=...+.+++..-. .++.+..|.-. ..|..|- +-|.--+
T Consensus 72 ~qV~~im~~R--gi~l~~~~~~~Ya~~L~~~~r~~~--~~~llD~Llv~----------------AlIEARScERF~lLa 131 (199)
T d2itba1 72 EQVLRLMKRR--GVPLRPVSAGRYASGLRRLVRAHE--PVKLVDTLVVG----------------AFIEARSCERFAALV 131 (199)
T ss_dssp HHHHHHHHHT--TCCCCCCCCCSHHHHHHTTSCSST--THHHHHHHHHH----------------HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHc--CCCCCCCCccHHHHHHHHHccCCC--hHHHHHHHHHH----------------HHHhhhHHhHHHHHH
Confidence 5677777765 444444434444677778876543 35777766443 2333333 3344444
Q ss_pred hhccCCCcHHHHHHHHHhCchhHHHHHH
Q psy13980 477 ALISAPSSLQDMYGAVQRSPARRYLAGL 504 (532)
Q Consensus 477 ~~~~~~~~~~~~~~~v~~s~~~~~~~~~ 504 (532)
... ++.++.||.-++.|.+|+|=+-+
T Consensus 132 ~~l--d~eL~~FY~~L~~SEarH~~~yl 157 (199)
T d2itba1 132 PHL--DEELGRFYHGLLKSEARHYQGYL 157 (199)
T ss_dssp GGS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 434 56799999999999999996543
Done!