RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13980
(532 letters)
>gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat. This cysteine rich
repeat contains four cysteines. It is found in multiple
copies in a protein that binds to fibroblast growth
factors. The repeat is also found in MG160 and
E-selectin ligand (ESL-1).
Length = 58
Score = 59.3 bits (144), Expect = 2e-11
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 143 CRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKA 195
C+Q V ++ E++ LDPVL+ +C D+ KFC +E GE QVLECL EHK
Sbjct: 3 CQQAVWRLQEEEAEDYRLDPVLQKACKDDIEKFCSDIEEGEGQVLECLKEHKD 55
Score = 48.9 bits (117), Expect = 6e-08
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 307 EKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYC 342
+C+ V + E+ EDYR +P L KACK D+ K+C
Sbjct: 1 PECQQAVWRLQEEEAEDYRLDPVLQKACKDDIEKFC 36
Score = 48.9 bits (117), Expect = 7e-08
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 396 CREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDR 451
C++ V L EE D +DP+L AC D+ K+C+D+ G G+ L CL+E +
Sbjct: 3 CQQAVWRLQEEEAEDYRLDPVLQKACKDDIEKFCSDIEEGEGQVLECLKEHKDDLK 58
Score = 43.2 bits (102), Expect = 6e-06
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 250 KCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYD--EEPAKTLTCLKRYKDSPS 304
+C +A++ +++++ D D L CK I+ +C D E + L CLK +KD
Sbjct: 2 ECQQAVWRLQEEEAEDYRLDPVLQKACKDDIEKFCSDIEEGEGQVLECLKEHKDDLK 58
Score = 42.0 bits (99), Expect = 2e-05
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 8 PDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQHKN 67
P+C V + +D RL+P++ K C I ++C D + V++CL +HK+
Sbjct: 1 PECQQAVWRLQEEEAEDYRLDPVLQKACKDDIEKFCSDIE-----EGEGQVLECLKEHKD 55
Query: 68 SPE 70
+
Sbjct: 56 DLK 58
Score = 40.9 bits (96), Expect = 4e-05
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 200 KCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYD--EEPAKTLTCLKRMK 250
+C +A++ +++++ D D L CK I+ +C D E + L CLK K
Sbjct: 2 ECQQAVWRLQEEEAEDYRLDPVLQKACKDDIEKFCSDIEEGEGQVLECLKEHK 54
Score = 40.5 bits (95), Expect = 6e-05
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 75 PKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCP-TSRTKAKVIECL 123
P+C+Q++ Q A DYR ++ACK ++C + +V+ECL
Sbjct: 1 PECQQAVWRLQEEEAEDYRLDPVLQKACKDDIEKFCSDIEEGEGQVLECL 50
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter
2; solute-binding domain. This family includes human
GAT2 (hGAT2) which transports gamma-aminobutyric acid
(GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT2 is encoded by the
SLC6A13 gene, and is similar to mouse GAT-3, and rat
GAT2. hGAT2 is expressed in brain, kidney, lung, and
testis. hGAT2 is a potential drug target for treatment
of epilepsy. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 544
Score = 33.3 bits (76), Expect = 0.35
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 464 MLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLV 518
+LL F E+L++A + DMY V R RR L L +SIV FL+GL+
Sbjct: 353 VLLGLDSQFVCVESLVTA---MVDMYPEVFRKKNRRELLILFVSIVS--FLVGLI 402
>gnl|CDD|201956 pfam01756, ACOX, Acyl-CoA oxidase. This is a family of Acyl-CoA
oxidases EC:1.3.3.6. Acyl-coA oxidase converts acyl-CoA
into trans-2- enoyl-CoA.
Length = 186
Score = 31.8 bits (73), Expect = 0.57
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 3 LPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRY 42
L E++P+ AL F + D LN + +Y G V
Sbjct: 121 LAEVRPNAVALTDAF---DLPDFVLNSPLGRYDGDVYENL 157
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 31.4 bits (72), Expect = 1.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 476 EALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVC 519
E ++A + D+Y V R RR + + + V FL+GL
Sbjct: 369 EGFVTA---IVDLYPNVLRLRYRREI--FVAIVCLVCFLIGLPM 407
>gnl|CDD|190039 pfam01563, Alpha_E3_glycop, Alphavirus E3 glycoprotein. This
protein is found in some alphaviruses as a virion
associated spike protein.
Length = 55
Score = 27.6 bits (62), Expect = 2.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 284 CYDEEPAKTLTCLKRYKDSPSFEE 307
CY++EP +TL L+ D+P ++E
Sbjct: 17 CYEKEPEETLRMLEDNVDNPGYDE 40
>gnl|CDD|238528 cd01095, Nitrilotriacetate_monoxgenase, nitrilotriacetate
monoxygenase oxidizes nitrilotriacetate utilizing
reduced flavin mononucleotide (FMNH2) and oxygen. The
FMNH2 is provided by an NADH:flavin mononucleotide (FMN)
oxidorductase that uses NADH to reduce FMN to FMNH2.
Length = 358
Score = 30.0 bits (68), Expect = 3.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 473 RNAEALISAPSSLQDMYGAVQRSPARRYLAGLLI 506
R+AEA+ +A +L++ AR AG L
Sbjct: 222 RHAEAVFTAQQTLEEAQAFYADVKARAAAAGRLD 255
>gnl|CDD|227722 COG5435, COG5435, Uncharacterized conserved protein [Function
unknown].
Length = 147
Score = 28.9 bits (65), Expect = 4.0
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 405 EEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRA 452
R +I V AA LD Y G R++ + R
Sbjct: 70 LHHRREIEVGG--AAAPLLD---YQWTSPEGEQRRVQQRQVFIERGDT 112
>gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating).
Length = 993
Score = 29.7 bits (67), Expect = 5.1
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 393 DRAC------REEVAALIEEGRADINVDPLLHA 419
DR C REE+A IE G+AD + L A
Sbjct: 895 DRFCDALISIREEIAD-IENGKADRENNVLKGA 926
>gnl|CDD|222774 PHA00028, rep, RNA replicase, beta subunit.
Length = 561
Score = 29.4 bits (66), Expect = 6.4
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 42 YCDDELRVS--FRDSTRDVMDCLVQHKNSPELRGEPKCR 78
CDD R RD T + +H P+L + R
Sbjct: 499 LCDDNGRYVVWLRDGTEAGVSHRARHTGLPDLSKRYRLR 537
>gnl|CDD|234130 TIGR03161, ribazole_CobZ, alpha-ribazole phosphatase CobZ.
Sequences in the seed alignment were the experimentally
characterized CobZ of the methanogenic archaeon
Methanosarcina mazei, and other archaeal proteins found
similarly next to or very near to other cobalamin
biosynthesis genes. CobZ replaces the
alpha-ribazole-phosphate phosphatase (EC 3.1.3.73)
called CobC in analogous bacterial pathways for
cobalamin biosynthesis under anaerobic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 140
Score = 28.1 bits (63), Expect = 7.0
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 368 EEEMDSQRGTVEECLKRALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDL 425
EEE S G VE L GK E + +E D NV LL AA L+
Sbjct: 6 EEEGISLEGLVE--TAMELYVGKEPREEAEERLLRELERYLEDPNVAALLIAALLLER 61
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,339,530
Number of extensions: 2538004
Number of successful extensions: 2238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2234
Number of HSP's successfully gapped: 25
Length of query: 532
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 431
Effective length of database: 6,457,848
Effective search space: 2783332488
Effective search space used: 2783332488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.4 bits)