RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13980
(532 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.6 bits (177), Expect = 1e-13
Identities = 85/525 (16%), Positives = 169/525 (32%), Gaps = 150/525 (28%)
Query: 3 LPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCL 62
L + V NF VQD+ + L + H+I D T + L
Sbjct: 22 LSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSG------TLRLFWTL 71
Query: 63 VQHKNSPELRGEPKCRQSIEHF-QLVTAGDYRFTV-AFKEACKHHAMRYCPTSRTKAKVI 120
+ E + ++ F + V +Y+F + K + P+ T+ I
Sbjct: 72 -------LSKQE----EMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMTR-MYI 113
Query: 121 ECLSTIITNDTLSDARFRIPR-NCRQQVRSQLLQQRENFDLDPVL-------KTSCAQDV 172
E + ND A++ + R ++R LL+ R ++ ++ KT A DV
Sbjct: 114 EQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDV 170
Query: 173 AKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKF 232
+ ++C ++ F I +L + +S +L
Sbjct: 171 CL---------SYKVQCKMD-------------FKIFWLNLKNCNSPETVL--------- 199
Query: 233 YCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYAL-LNTCKPMIKFYCYDEEPAK 291
E + L ++ D SS+ L +++ + ++ +
Sbjct: 200 -----EMLQKL-------LYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 292 TLTCLKRYKDS---PSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVT--VM 346
L L +++ +F CK+L+ R VT +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTR--------------------FKQ---VTDFLS 282
Query: 347 AHQPQDSELEGKIQGLCEMEKEE------EMDSQRGTVEEC----LKRALVAGKIRDRAC 396
A L+ L E + + Q E + +++A IRD
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 397 R---------EEVAALIEEGRADINV-DPLLHAACSLDLTKYCADVA-PGNGRQLMCL-- 443
+++ +IE + +NV +P + L+ + P L+ L
Sbjct: 343 TWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSLIW 396
Query: 444 EELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDM 488
++ + D V + + K L+ + + E+ IS PS ++
Sbjct: 397 FDVIKSD--VMVVVNKLHKYSLVEK----QPKESTISIPSIYLEL 435
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 6e-07
Identities = 99/602 (16%), Positives = 172/602 (28%), Gaps = 198/602 (32%)
Query: 5 ELKPDCAALVGNFTSAQVQDVRLNP-----LIMKYCGHVIHRYCDDELRVSFRDSTRDVM 59
+L+ ++ T D P L+ K+ G+V + S V+
Sbjct: 32 QLQEQFNKILPEPTEGFAAD--DEPTTPAELVGKFLGYVSS-----LVEPSKVGQFDQVL 84
Query: 60 DCLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKV 119
+ + + L G I H +A K ++ T ++
Sbjct: 85 NLCLTEFENCYLEGN-----DI-H-----------ALAAKLLQENDT-----TLVKTKEL 122
Query: 120 IECLSTIITNDTLSDARFRIPRNCRQQVRSQLLQ---------------Q---------- 154
I+ T AR R ++ S L + Q
Sbjct: 123 IKNYIT---------ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 155 RENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQ--QD 212
R+ + VL D+ KF A+ L L+ K +I + ++
Sbjct: 174 RDLYQTYHVL----VGDLIKFS-------AETLSELIRTTLDAE-KVFTQGLNILEWLEN 221
Query: 213 LGDSSSDYALLS---TCKPMI---KFYCYDEEPAKTLTCLKRMKCHKALFHIEQ------ 260
++ LLS +C P+I + Y +T L +
Sbjct: 222 PSNTPDKDYLLSIPISC-PLIGVIQLAHY------VVTAKLLGFTPGELRSYLKGATGHS 274
Query: 261 QDL--------GDSSSDYALLNTCKPMIK--FY----CYDEEPAKTLTCLKRYKDSPSFE 306
Q L DS + + + I F+ CY+ P +L +DS
Sbjct: 275 QGLVTAVAIAETDSWESF--FVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENN 331
Query: 307 EK--CKLLVIKRM-IEQNEDY--RFNPELMKACKPDMSKYCVT--------VMAHQPQDS 353
E +L I + EQ +DY + N L P + ++ V++ PQ
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHL-----PAGKQVEISLVNGAKNLVVSGPPQS- 385
Query: 354 ELEGKIQGLCEMEKEEEMD------SQRGTV-------------EECLKRALVAGKIRDR 394
L G L + + +D S+R L A + I
Sbjct: 386 -LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA--SDLINKD 442
Query: 395 ACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLE---ELARRDR 451
+ V+ DI + P+ DL ++ ++ L E + +
Sbjct: 443 LVKNNVSF----NAKDIQI-PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 452 A--------DGVS-LQEQCKTMLLARIDMFRNAEA----LISAPSSLQDMYGAVQRSPAR 498
A G S L +L RN + +I A G + +P
Sbjct: 498 ATHILDFGPGGASGL-----GVLTH-----RNKDGTGVRVIVA--------GTLDINPDD 539
Query: 499 RY 500
Y
Sbjct: 540 DY 541
Score = 49.3 bits (117), Expect = 3e-06
Identities = 61/395 (15%), Positives = 102/395 (25%), Gaps = 150/395 (37%)
Query: 191 LEHKAAVSMKCHKALFHIEQ------QDLGDSSSDYA----------LLSTCKPMIKFYC 234
LEH V F Q + L + + +A L+ KF
Sbjct: 16 LEHVLLVPTASF---FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG------KFLG 66
Query: 235 Y------DEEPAKTLTCLKRMKCHKALFHIEQQDLGDS----------SSDYALLNTCKP 278
Y + + L L E L + + L K
Sbjct: 67 YVSSLVEPSKVGQFDQVLN-----LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 279 MIKFYCYDEEPAKTLTCLKRYKDSPS--FE----EKCKLLVI---KRMIEQ--NEDYRFN 327
+IK Y A+ + K S S F +L+ I Q +DY F
Sbjct: 122 LIKNY-IT---ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-----QGNTDDY-F- 170
Query: 328 PELMKACKPDMSKYCVTVMAHQPQDSEL----EGKIQGLCEMEKEEEMDSQRGTVEECLK 383
EL +L + L + T+ E ++
Sbjct: 171 EEL----------------------RDLYQTYHVLVGDLIK--------FSAETLSELIR 200
Query: 384 RALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSL------DLTKYCA-----DV 432
L A K+ + + +E + D LL S L Y
Sbjct: 201 TTLDAEKVFTQGL--NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 433 APGNGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAV 492
PG R + G + L+ A I+ S + + +V
Sbjct: 259 TPGELRSYLK-----------GATG---HSQGLVT-------A-VAIAETDSWESFFVSV 296
Query: 493 QRSPARRYLAGLLISIVGVIFLMGLVCGRVANRSA 527
++ + V+F +G+ C ++
Sbjct: 297 RK-------------AITVLFFIGVRCYEAYPNTS 318
Score = 37.3 bits (86), Expect = 0.013
Identities = 52/295 (17%), Positives = 86/295 (29%), Gaps = 97/295 (32%)
Query: 235 YDEEP-AKTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTL 293
Y A+ + R H + G S D + N I F E K +
Sbjct: 1636 YKTSKAAQDV--WNRADNHF------KDTYGFSILDIVINNPVNLTIHF---GGEKGKRI 1684
Query: 294 T------CLKRYKDSPSFEEKCKLLVIKRMIEQNEDYRFNP--ELMKACKPDMSKYCVTV 345
+ D EK + K + E + Y F L+ A T
Sbjct: 1685 RENYSAMIFETIVDGKLKTEK----IFKEINEHSTSYTFRSEKGLLSA----------TQ 1730
Query: 346 MAHQP----------QDSELEGKIQ------G--LCE----------MEKEEEMD--SQR 375
QP +D + +G I G L E M E ++ R
Sbjct: 1731 FT-QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 376 G-TVEECLKR-----------ALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSL 423
G T++ + R A+ G++ +E + ++E L+
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW--LVEIVN-- 1845
Query: 424 DLTKY-CAD---VAPGNGRQLMCLEELARRDRA---DGVSLQ-----EQCKTMLL 466
Y + VA G+ R L + + + D + LQ E+ + L
Sbjct: 1846 ----YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.15
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 35/63 (55%)
Query: 259 EQQDLG--DSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYKDSPSFEEKCKLLVIKR 316
E+Q L +S +K Y D PA L IK
Sbjct: 18 EKQALKKLQAS------------LKLYADDSAPA---------------------LAIKA 44
Query: 317 MIE 319
+E
Sbjct: 45 TME 47
Score = 29.9 bits (66), Expect = 1.1
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 14/34 (41%)
Query: 209 EQQDLG--DSSSDYALLSTCKPMIKFYCYDEEPA 240
E+Q L +S +K Y D PA
Sbjct: 18 EKQALKKLQAS------------LKLYADDSAPA 39
>3n40_P P62 envelope glycoprotein; viral protein, immature heterodimer,
alphavirus, receptor BI membrane fusion; HET: NAG NDG;
2.17A {Chikungunya virus} PDB: 3n44_B* 3n41_B* 3n42_B*
3n43_B* 2xfb_B 3n44_A* 3n41_A* 3n42_A* 3n43_A*
Length = 401
Score = 31.6 bits (71), Expect = 0.76
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 277 KPMIKFYCYDEEPAKTLTCLKRYKDSPSFEE 307
+P CY++EP +TL L+ P + +
Sbjct: 15 QPPCTPCCYEKEPEETLRMLEDNVMRPGYYQ 45
Score = 28.1 bits (62), Expect = 7.2
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 31 IMKYCGHVIHRYC--DDELRVSFRDSTRDVMDCLVQHKNSPELRGEPKCRQSIEH 83
I GH I C + L V F DS + C + P + G K +H
Sbjct: 153 ITGTMGHFILARCPKGETLTVGFTDSRKISHSCTHPFHHDPPVIGREKFHSRPQH 207
>3j0g_M E3 protein; alphavirus, bioweapon, VEEV; 4.80A {Venezuelan equine
encephalitis virus}
Length = 59
Score = 28.0 bits (62), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 284 CYDEEPAKTLTCLKRYKDSPSFEE 307
CYD +PA+TL L D+P ++E
Sbjct: 22 CYDRKPAETLAMLSVNVDNPGYDE 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 28.6 bits (65), Expect = 4.0
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 399 EVA-ALIEEGRADIN-VD-----PLLHAACSLDLTKYCADVA 433
+ L+E+GR DI+ + L+ A + + D+
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 6.8
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 366 EKEEEMDSQRGTVEECLKRALVAGKIRDRACREEVAALIEEGRADIN 412
+E +S R EE KR + D A + E+ + D+
Sbjct: 79 RLTQEPESIRKWREEQRKRL----QELDAASKVMEQEWREKAKKDLE 121
>2xfc_B E2 envelope glycoprotein; receptor binding, membrane fusion,
icosahedral envelo; 9.00A {Chikungunya virus}
Length = 423
Score = 28.5 bits (63), Expect = 6.9
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 31 IMKYCGHVIHRYC--DDELRVSFRDSTRDVMDCLVQHKNSPELRGEPKCRQSIEH 83
I GH I C + L V F DS + C + P + G K +H
Sbjct: 93 ITGTMGHFILARCPKGETLTVGFTDSRKISHSCTHPFHHDPPVIGREKFHSRPQH 147
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat
repeat, translation; 2.24A {Homo sapiens} SCOP:
a.118.1.14 a.118.1.14
Length = 339
Score = 28.3 bits (62), Expect = 7.6
Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 14/133 (10%)
Query: 247 KRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYKD----- 301
+ K + + ++ + + K + ++
Sbjct: 183 AFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIV 242
Query: 302 SPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEG--KI 359
S + V I R + ++KA + KY + EL+ +
Sbjct: 243 SNTLVRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCD------EQKELQALYAL 296
Query: 360 QGLC-EMEKEEEM 371
Q L +E+ +
Sbjct: 297 QALVVTLEQPPNL 309
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,069,209
Number of extensions: 488108
Number of successful extensions: 1003
Number of sequences better than 10.0: 1
Number of HSP's gapped: 992
Number of HSP's successfully gapped: 18
Length of query: 532
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 434
Effective length of database: 3,965,535
Effective search space: 1721042190
Effective search space used: 1721042190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.0 bits)