RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13980
         (532 letters)



>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR,
           N-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 75

 Score = 28.1 bits (63), Expect = 0.54
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 438 RQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPA 497
           +    L+ + +      VS+ E  +   ++  + ++    L           G V R   
Sbjct: 6   KAFEILDFIVKNPG--DVSVSEIAEKFNMSVSNAYKYMVVLEEK--------GFVLRKKD 55

Query: 498 RRYLAGLLISIVGVIFLMGL 517
           +RY+ G  +   G   L   
Sbjct: 56  KRYVPGYKLIEYGSFVLRRF 75


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 28.0 bits (62), Expect = 0.79
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 13/72 (18%)

Query: 300 KDSPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKI 359
           K+  + E   K L     +   EDY    EL+    P+ S + V              KI
Sbjct: 25  KNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVL-----------STKI 73

Query: 360 QGLCEMEKEEEM 371
           +   +++K E +
Sbjct: 74  E--IKLKKPEAV 83


>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3
           and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 198

 Score = 28.7 bits (64), Expect = 1.4
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 3   LPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCD 44
             +++P+  ALV  F      D  LN ++ +Y G+V  +  +
Sbjct: 132 YTQVRPNAVALVDAF---NYTDHYLNSVLGRYDGNVYPKLFE 170


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,968,336
Number of extensions: 94178
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 4
Length of query: 532
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 442
Effective length of database: 1,171,896
Effective search space: 517978032
Effective search space used: 517978032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.5 bits)