RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13994
         (97 letters)



>gnl|CDD|225995 COG3464, COG3464, Transposase and inactivated derivatives [DNA
          replication, recombination, and repair].
          Length = 402

 Score = 32.8 bits (75), Expect = 0.013
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 22 VKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSA 81
           +K  C  C  R     + R H  R R + + P     V +         +++ C  C  
Sbjct: 36 PRKHRCPECGQR-----TIRRHGWRIRKIQDLPLFEVPVYL-----FLRKRRYKCCRCGK 85

Query: 82 RFSQKISCR 90
          RF++K+   
Sbjct: 86 RFAEKVDFV 94


>gnl|CDD|218398 pfam05045, RgpF, Rhamnan synthesis protein F.  This family consists
           of a group of proteins which are related to the
           Streptococcus rhamnose-glucose polysaccharide assembly
           protein (RgpF). Rhamnan backbones are found in several O
           polysaccharides of phytopathogenic bacteria and are
           regarded as pathogenic factors.
          Length = 498

 Score = 26.3 bits (58), Expect = 3.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 47  HRDVCNKPYHRKSVLIAHLQSH 68
           HR +   P+    VL  H+QS+
Sbjct: 89  HRAIKPNPFTGTGVLPEHIQSY 110


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.330    0.136    0.449 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,487,878
Number of extensions: 331195
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 33
Length of query: 97
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 33
Effective length of database: 8,098,946
Effective search space: 267265218
Effective search space used: 267265218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.3 bits)