RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13994
(97 letters)
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 52.5 bits (127), Expect = 1e-10
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHR-------DVCN 52
CNK+Y + S L H + H G K + C++ C RFS+ + H RH C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 53 KPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
+ + R L H ++H G K F C + C +F++ H H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 51.0 bits (123), Expect = 8e-10
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR----------DVC 51
C+K++ K L H + H G K F C C + +K + H R+ VC
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVC 72
Query: 52 NKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR 95
+ + R+ L H+ SH G + C CS +F QK + HM++
Sbjct: 73 QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 35.2 bits (82), Expect = 7e-04
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAH---LQSH 68
G C C +F K +VH +H C K Y RK L+ H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 69 EGVKKFGCEYCSARFSQKISCRVHMLRH 96
+ F C C F +++ R+HM+ H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSH 89
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 49.4 bits (119), Expect = 2e-09
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH---------RDVCN 52
C K + S + HL +H G + C C F + + H L H + C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 53 KPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
K + L H++ H G + + C + C+ +F+Q + + H+L H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 35.6 bits (83), Expect = 4e-04
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH---------RDV 50
C K + S L H H G K F C + C RFS + R H+ H D
Sbjct: 40 CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 99
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKF 74
CNK + + + L +H+ +H K
Sbjct: 100 CNKKFAQSTNLKSHILTHAKAKNN 123
Score = 32.9 bits (76), Expect = 0.005
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 23 KKFGCEY--CSARFSQKISCRVHMLRHR------DVCNKPYHRKSVLIAHLQSHEGVKKF 74
+ C + C+ F + R H+ H C K + S L H H G K F
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 75 GCEY--CSARFSQKISCRVHMLRH 96
C + C RFS + R H+ H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIH 87
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 49.9 bits (120), Expect = 3e-09
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 19/113 (16%)
Query: 2 CNKQYHRKSVLIAHLQS---HEGVKKFGCEYCSAR-----FSQKISCRVHMLRH------ 47
C++++ + L+ H+ S H K+F C + F + VHM RH
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 48 ---RDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLR 95
+ C K Y R L HL+SH G K + CE+ CS FS H R
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Score = 40.3 bits (95), Expect = 1e-05
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHRDVCNKPYHRKS 59
C K Y R L HL+SH G K + CE+ CS FS H R
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR------------- 121
Query: 60 VLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
+H K + C+ C+ R++ S R H+
Sbjct: 122 -------THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 35.3 bits (82), Expect = 0.001
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 17/88 (19%)
Query: 23 KKFGCEYCSARFSQKISCRVHMLRHR---------------DVCNKPYHRKSVLIAHLQS 67
+ CS F + H+ +P+ + +L+ H++
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 68 HEGVKKFGCEY--CSARFSQKISCRVHM 93
H G K C + C +S+ + + H+
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHL 89
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 48.4 bits (116), Expect = 4e-09
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 19/95 (20%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
C K Y + S L AHL++H G K + C + + C+ + R L
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTW-------------------EGCDWRFARSDEL 63
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
H + H G K F C C+ FS+ +HM RH
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 40.7 bits (96), Expect = 4e-06
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRD 49
C+ ++ R L H + H G K F C C+ FS+ +HM RH++
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 47.1 bits (113), Expect = 6e-09
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 19/82 (23%)
Query: 12 LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGV 71
+ ++H G K + C C ARF+Q + ++H+L+ E V
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK-------------------HTENV 43
Query: 72 KKFGCEYCSARFSQKISCRVHM 93
KF C +C ++K VH+
Sbjct: 44 AKFHCPHCDTVIARKSDLGVHL 65
Score = 37.1 bits (87), Expect = 5e-05
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 1 VCNKQYHRKSVLIAHLQSH--EGVKKFGCEYCSARFSQKISCRVHM 44
+C+ ++ + + H+ E V KF C +C ++K VH+
Sbjct: 20 ICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 34.4 bits (80), Expect = 6e-04
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 61 LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
+ ++H G K + C C ARF+Q + ++H+L+
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 48.4 bits (116), Expect = 1e-08
Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 20/115 (17%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKF---------GCEYCSARFSQKISCRVHMLRH----- 47
C++ + L+ H+ C F K H+ H
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 48 ----RDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
C K + R L H ++H G K F CE+ C RF+ + HM H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 40.3 bits (95), Expect = 1e-05
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 18/110 (16%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR------------- 48
++ E + C FS H+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 49 ---DVCNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHM 93
K + K L+ H++ H G K F C + C F++ + ++H
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 33.8 bits (78), Expect = 0.003
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHRDVCNKPY 55
C K + R L H ++H G K F CE+ C RF+ + HM H +K
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS--DKSG 151
Score = 28.4 bits (64), Expect = 0.22
Identities = 5/46 (10%), Positives = 9/46 (19%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
++ E + C FS H+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME 48
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 46.6 bits (111), Expect = 1e-08
Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 18/78 (23%)
Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY 78
G CE C QK S H +H + +F CE+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAE------------------TVAALRFPCEF 43
Query: 79 CSARFSQKISCRVHMLRH 96
C RF + S H +
Sbjct: 44 CGKRFEKPDSVAAHRSKS 61
Score = 42.8 bits (101), Expect = 3e-07
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 1 VCNKQYHRKSVLIAHLQSH---EGVKKFGCEYCSARFSQKISCRVHMLRH 47
+C +K+ L H + H +F CE+C RF + S H +
Sbjct: 12 ICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 23.1 bits (50), Expect = 9.8
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFS 35
C K++ + + AH + S S
Sbjct: 43 FCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 44.8 bits (107), Expect = 7e-08
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 21/95 (22%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
C++++ + L H++ H G K F C C FS+ L
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSR---------------------SDHL 50
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
H+++H G K F C+ C +F++ + H H
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 44.8 bits (107), Expect = 8e-08
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
C K Y + S L AHL++H G K + C++ C + R L
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDG-------------------CGWKFARSDEL 53
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
H + H G + F C+ C FS+ +HM RH
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 42.8 bits (102), Expect = 2e-06
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
C K + +++ L AH ++H G K + C C FSQ R H H C K
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS 142
Query: 55 YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ R+ L H ++H G K + C C FS++ + VH
Sbjct: 143 FSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 42.8 bits (102), Expect = 2e-06
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
C K + R L H ++H G K + C C FS K H H C K
Sbjct: 27 CGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS 86
Query: 55 YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
+ +++ L AH ++H G K + C C FSQ R H H
Sbjct: 87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 42.4 bits (101), Expect = 3e-06
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
C K + K L H ++H G K + C C FSQ+ + R H H C K
Sbjct: 55 CGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS 114
Query: 55 YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ + + L AH ++H G K + C C FS++ + H
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 39.7 bits (94), Expect = 3e-05
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 8 RKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSV 60
S +A G K + C C FS+ H H C K + K
Sbjct: 5 GSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64
Query: 61 LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
L H ++H G K + C C FSQ+ + R H H
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 32.0 bits (74), Expect = 0.014
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
C K + + + L AH ++H G K + C C FS++ + H H C K
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKS 170
Query: 55 YHRKSVLIAHLQSHEGVK 72
+ R+ L H ++H G K
Sbjct: 171 FSRRDALNVHQRTHTGKK 188
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 43.0 bits (102), Expect = 2e-06
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 15/110 (13%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH---------RDV 50
C Y++ L AHL H G K F C+ C F+ H L H D
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKF----GCEYCSARFSQKISCRVHMLRH 96
C+ + K+ + H +K E C F + +VH H
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 39.5 bits (93), Expect = 3e-05
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 13/97 (13%)
Query: 13 IAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH---------RDVCNKPYHRKSVL 61
+ K++ C + C A +++ + H+ +H + C K + L
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 62 IAHLQSHEGVKKFGCE--YCSARFSQKISCRVHMLRH 96
H +H G K F C+ C RF+ K + + H R
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 37.2 bits (87), Expect = 2e-04
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 13/107 (12%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKF----GCEYCSARFSQKISCRVHMLRH---------R 48
C+ ++ K+ + H +K E C F + +VH H
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 49 DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR 95
+ C+K + S L H + H G + CS H+
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 41.3 bits (98), Expect = 2e-06
Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEG 70
S CE C FS+K + HM H C+ S L HL+ H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 71 VKKFGCEYCSARFSQKISCRVHMLRH 96
+ F C+ C VH+ H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 32.0 bits (74), Expect = 0.006
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
C+ S L HL+ H + F C+ C VH+ H
Sbjct: 42 CDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 39.8 bits (94), Expect = 7e-06
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 22/96 (22%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
C + + R L H+++H G K F C+ C +F++ + H P
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI---LPIL----- 60
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR 97
+ S+ + R +
Sbjct: 61 --------------EDKVEELLSKNYHLENEVARLK 82
Score = 32.1 bits (74), Expect = 0.006
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 49 DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
+C + + R L H+++H G K F C+ C +F++ + H
Sbjct: 7 RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 40.1 bits (95), Expect = 8e-06
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 9 KSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVL 61
S + K+F C++C F++ + +H H D+C+K + R+ L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
H H K F C+ C F Q + VH H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 32.4 bits (75), Expect = 0.005
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
C + + + L+ H ++H + + C+ C F ++ R H H C K
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKG 82
Query: 55 YHRKSVLIAHLQSHEGVKKFGC 76
+ + L H H
Sbjct: 83 FCQSRTLAVHKTLHMQTSSPTA 104
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 39.4 bits (91), Expect = 2e-05
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 8 RKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYH----------- 56
S + G KF C+ CSA + + VHM + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 57 -RKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR 97
RK L+ + K C YC F VHM++ +
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 27.8 bits (61), Expect = 0.31
Identities = 11/48 (22%), Positives = 16/48 (33%)
Query: 8 RKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPY 55
RK L+ + K C YC F VHM++ +
Sbjct: 64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 37.9 bits (89), Expect = 2e-05
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 19/79 (24%)
Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY 78
EG + C+ CS ++ + H + VK + C +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTS-------------------HKRNVKVYPCPF 45
Query: 79 CSARFSQKISCRVHMLRHR 97
C F++K + H+
Sbjct: 46 CFKEFTRKDNMTAHVKIIH 64
Score = 36.4 bits (85), Expect = 8e-05
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 1 VCNKQYHRKSVLIAHLQS--HEGVKKFGCEYCSARFSQKISCRVHMLRHRDV 50
VC++ Y S H + VK + C +C F++K + H+ +
Sbjct: 15 VCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 37.7 bits (88), Expect = 3e-05
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
C++++ R L H++ H G K F C C FS+ H+ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.7 bits (83), Expect = 2e-04
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
C++ + R L H++ H G K F C C FS+ H+ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 36.3 bits (85), Expect = 1e-04
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
C+ K+ L H + H + F C YCS Q + HM +
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 35.2 bits (82), Expect = 2e-04
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
C+ K+ L H + H + F C YCS Q + HM +
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 36.3 bits (85), Expect = 1e-04
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSH--E 69
G CE C F H L H VC + RK + H++SH
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 70 GVKKFGCEYCSARFSQKISCRVHMLR 95
K + C+ C FS+ H+ +
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 29.8 bits (68), Expect = 0.056
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
C K + L H SH G K + C C RF +K H+ H
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 28.2 bits (64), Expect = 0.16
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 2 CNKQYHRKSVLIAHLQSH--EGVKKFGCEYCSARFSQKISCRVHMLR 46
C ++ RK + H++SH K + C+ C FS+ H+ +
Sbjct: 41 CGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 36.0 bits (84), Expect = 2e-04
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 12 LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH--RDVCNKPY---------HRKSV 60
+ ++H G K + C +C F QK +H R+ + + R++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 61 LIAHLQSHEGVKKFGCEYC 79
+ H + G E
Sbjct: 63 MARHADNCAGPDGVEGENS 81
Score = 28.6 bits (65), Expect = 0.12
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 2 CNKQYHRKSVLIAHLQSHEG----VKKFGCEYCSARFSQKISCRVHMLRH 47
C+K + +K +L H + + F C C F+++ + H
Sbjct: 21 CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Score = 26.3 bits (59), Expect = 0.72
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 61 LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
+ ++H G K + C +C F QK +H R+
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
Score = 23.3 bits (51), Expect = 9.4
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYC 30
C K + R++ + H + G E
Sbjct: 53 CGKTFTRRNTMARHADNCAGPDGVEGENS 81
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 36.3 bits (85), Expect = 2e-04
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
C K + KS H+ H G++ +GC C +F K HM H ++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 55 YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQK 86
+ + H+ K + ++
Sbjct: 75 FMWRDSFHRHV--TSCTKSYEAAKAEQNTTEA 104
Score = 30.1 bits (69), Expect = 0.045
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
C K + KS H+ H G++ +GC C +F K HM H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 37.5 bits (86), Expect = 3e-04
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 7/85 (8%)
Query: 1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSV 60
+ + + + + C CSA + H+ H ++
Sbjct: 157 ATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH-------GNM 209
Query: 61 LIAHLQSHEGVKKFGCEYCSARFSQ 85
+ + + +F + + Q
Sbjct: 210 TLTSSEIQRHITEFISSWQNHPIVQ 234
Score = 36.0 bits (82), Expect = 7e-04
Identities = 6/49 (12%), Positives = 14/49 (28%)
Query: 49 DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR 97
+ + + + + + C CSA + H+ H
Sbjct: 156 EATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 34.3 bits (80), Expect = 7e-04
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 21/95 (22%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
C K + R S L HL H + + C+YC RF QK S +
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK---------------------SDM 45
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
H H G K C+ C FSQ + H +H
Sbjct: 46 KKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 33.4 bits (77), Expect = 0.002
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 19/94 (20%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
C K + + + L H SH + C + + C+K + S L
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPH-------------------EGCDKRFSLPSRL 49
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR 95
H + H G + CS H+
Sbjct: 50 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
Score = 28.7 bits (65), Expect = 0.088
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
C K + + + L H SH + C + C RFS + H H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
S G K + CE C RF + + H+ H
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
S G K + CE C RF + + H+ H
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 32.4 bits (73), Expect = 0.003
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
C + + S+L H+++H V+ + C YC+ F K + HM
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 30.5 bits (68), Expect = 0.016
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
C + S+L H+++H V+ + C YC+ F K + HM
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 25.4 bits (55), Expect = 1.3
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 24 KFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKK 73
K+ CE C R + + H+ H CN + K L H++S KK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 31.6 bits (72), Expect = 0.008
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 47
C K Y + S L AH ++H G K F C + C RF++ H H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 31.2 bits (71), Expect = 0.011
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
C K Y + S L AH ++H G K F C + C RF++ H H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.8 bits (69), Expect = 0.013
Identities = 11/68 (16%), Positives = 21/68 (30%)
Query: 8 RKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQS 67
+ H G + C C F ++ + + C K +++ L +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGN 61
Query: 68 HEGVKKFG 75
G K G
Sbjct: 62 ESGKKTSG 69
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 29.6 bits (67), Expect = 0.019
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
+ G+K F C C FS+ +H RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 29.6 bits (67), Expect = 0.019
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
+ G+K F C C FS+ +H RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.1 bits (69), Expect = 0.026
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRD-----VCNKPY 55
+ N Q +S + L + + + +F C C FS +S + H+ VC K +
Sbjct: 51 IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEF 110
Query: 56 HRKSVLIAHLQSHEGV 71
+ H+ +
Sbjct: 111 TSTDSALDHVCKKHNI 126
Score = 26.8 bits (58), Expect = 0.98
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVC 51
+C + L H++ E K C C F+ S H+ + ++C
Sbjct: 79 LCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKKHNIC 127
Score = 26.4 bits (57), Expect = 1.3
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 9 KSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR---HRDVCNKPYHRKSVLIAHL 65
S +L +H+G+ R+ Q + ++R + N +S + L
Sbjct: 7 DSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRL 66
Query: 66 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHR 97
+ + + +F C C FS +S + H+
Sbjct: 67 LASKAISQFVCPLCLMPFSSSVSLKQHIRYTE 98
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 30.6 bits (68), Expect = 0.032
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 20 EGVKKFGCEYCSARFSQKISCRVHMLRHRD-----VCNKPYHRKSVLIAHLQSHEGVKKF 74
E + + C C+A+ S + H R+ C+ + + H +S KK
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEH-ESKCEYKKL 70
Query: 75 GCEYCSARFSQKISCRVH 92
C C F S H
Sbjct: 71 TCLECMRTFKSSFSIWRH 88
Score = 26.0 bits (56), Expect = 1.5
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 31 SARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCR 90
S+ S + +CN +H + C YCS RF +
Sbjct: 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQ 59
Query: 91 VHMLRHR 97
H +
Sbjct: 60 EHESKCE 66
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 29.7 bits (68), Expect = 0.033
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
C + K L +H H G K + C C A+F++ + + H H
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 29.3 bits (67), Expect = 0.056
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
C + K L +H H G K + C C A+F++ + + H H
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 29.8 bits (68), Expect = 0.038
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 12/77 (15%)
Query: 19 HEGVKKFGCEY--CSARFSQKISCRVHM-LRH---------RDVCNKPYHRKSVLIAHLQ 66
G C++ C FS + H +H C K ++ K L H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 67 SHEGVKKFGCEYCSARF 83
H + + CE+
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 26.7 bits (60), Expect = 0.55
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 51 CNKPYHRKSVLIAHL-QSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
C + + + L H H K F C C F+ K + HM H
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 24.0 bits (53), Expect = 4.5
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARF 34
C K ++ K L H++ H + + CE+
Sbjct: 46 CGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 29.7 bits (68), Expect = 0.039
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
C K + R S+L+ H + H G K + C C FSQ H
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 29.4 bits (67), Expect = 0.043
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
C K + R S+L+ H + H G K + C C FSQ H
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 29.0 bits (66), Expect = 0.039
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
S G K + CE C ARF Q R H+L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 29.0 bits (66), Expect = 0.039
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
S G K + CE C ARF Q R H+L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 29.9 bits (67), Expect = 0.050
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 14/76 (18%)
Query: 2 CNKQYHRKSVLIAHLQS-HEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSV 60
C++ + L+ H+ H G + C C K + K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVC-----YWEEC--------PREGKSFKAKYK 77
Query: 61 LIAHLQSHEGVKKFGC 76
L+ H++ H G K
Sbjct: 78 LVNHIRVHTGEKSGPS 93
Score = 24.5 bits (53), Expect = 3.8
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 49 DVCNKPYHRKSVLIAHLQS-HEGVKKF--------GCEYCSARFSQKISCRVHMLRH 96
C++ + L+ H+ H G + C F K H+ H
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 28.3 bits (64), Expect = 0.079
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 2 CNKQYHRKSVLIAHLQS-HEGVKKFGCEYCSARFSQ 36
C K + R L H++ H + C+ + S
Sbjct: 18 CGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 24.5 bits (54), Expect = 2.7
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 22/73 (30%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQS-HEGVK 72
+ S K + C+ C FS R L H++ H +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFS---------------------RPDHLNGHIKQVHTSER 40
Query: 73 KFGCEYCSARFSQ 85
C+ + S
Sbjct: 41 PHKCQVWVSGPSS 53
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 28.0 bits (63), Expect = 0.11
Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 19/64 (29%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKK 73
+ S G K F C + C + R L H +SH GVK
Sbjct: 2 SSGSSGTGEKPFACTW-------------------PGCGWRFSRSDELSRHRRSHSGVKP 42
Query: 74 FGCE 77
G
Sbjct: 43 SGPS 46
Score = 26.5 bits (59), Expect = 0.45
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCE 28
C ++ R L H +SH GVK G
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 24.2 bits (53), Expect = 2.8
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 63 AHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
+ S G K F C + C RFS+ H H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 27.8 bits (63), Expect = 0.19
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 9 KSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVL 61
+++ C+ C FS H H D C K + ++S L
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 62 IAHLQSHEGVK 72
I H + H G
Sbjct: 63 IGHHRVHTGSG 73
Score = 26.3 bits (59), Expect = 0.74
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
C K + S L H ++H G K + C+ C F Q+ H
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 27.5 bits (62), Expect = 0.20
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 49 DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR 95
+VC + + R+ L H +SH K + C C+ F+++ H +
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 27.1 bits (61), Expect = 0.29
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR 46
C + + R+ L H +SH K + C C+ F+++ H +
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.3 bits (59), Expect = 0.46
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGC 76
C K + KS L+ H Q+H K G
Sbjct: 16 CEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 26.0 bits (58), Expect = 0.53
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K + KS L+ H Q+H K G
Sbjct: 16 CEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 26.0 bits (58), Expect = 0.50
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
S G K + C+ C FSQK S VH+ H
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 26.0 bits (58), Expect = 0.50
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
S G K + C+ C FSQK S VH+ H
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 0.73
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S GV + C C FS K+ VH
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 25.6 bits (57), Expect = 0.73
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S GV + C C FS K+ VH
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGC 76
C K + KS LI H ++H K G
Sbjct: 18 CGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 25.2 bits (56), Expect = 1.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K + KS LI H ++H K G
Sbjct: 18 CGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 22.9 bits (50), Expect = 7.6
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G K C C F K +H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 24.9 bits (55), Expect = 1.1
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
S G + C C F+Q+ S VH
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 24.9 bits (55), Expect = 1.1
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
S G + C C F+Q+ S VH
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.9 bits (55), Expect = 1.4
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
+ S G K F C+ C FS S H+ H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 24.9 bits (55), Expect = 1.4
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
+ S G K F C+ C FS S H+ H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 24.5 bits (54), Expect = 2.2
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C + L HL+SHE G
Sbjct: 18 CGMNFSWSCSLFKHLRSHERTDPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 24.8 bits (55), Expect = 1.9
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 21/63 (33%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKK 73
+ S GVK +GC C+ FS KS LI H +SH GVK
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSL---------------------KSQLIVHQRSHTGVKP 40
Query: 74 FGC 76
G
Sbjct: 41 SGP 43
Score = 24.4 bits (54), Expect = 2.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S GVK +GC C+ FS K VH
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 24.0 bits (53), Expect = 2.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K + KS LI H +SH GVK G
Sbjct: 18 CAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K + R S LI HL+ H K G
Sbjct: 18 CGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 24.4 bits (54), Expect = 2.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGC 76
C K + R S LI HL+ H K G
Sbjct: 18 CGKNFGRHSHLIEHLKRHFREKSSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (54), Expect = 2.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S G K + C C FSQ S R+H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 24.4 bits (54), Expect = 2.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G K + C C FSQ S R+H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 23.6 bits (50), Expect = 3.7
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCN 52
G + F C C + F+ K +C H+ H D +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 4.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
+ S G K +GC C FS K +HM H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 23.7 bits (52), Expect = 4.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
+ S G K +GC C FS K +HM H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 22.9 bits (50), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCE 28
C K + KS LI H+++H G K G
Sbjct: 18 CGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 4.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K + R+S L HL+ H K G
Sbjct: 18 CGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 23.6 bits (52), Expect = 4.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGC 76
C K + R+S L HL+ H K G
Sbjct: 18 CGKGFGRRSHLAGHLRLHSREKSSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGC 76
C K + KS LI H +SH G K G
Sbjct: 18 CGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 23.7 bits (52), Expect = 5.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K + KS LI H +SH G K G
Sbjct: 18 CGKAFKTKSSLICHRRSHTGEKPSGP 43
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 23.7 bits (51), Expect = 5.0
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
+ S G F C C F+Q+ H H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 23.7 bits (51), Expect = 5.0
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
+ S G F C C F+Q+ H H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGC 76
C K + RKS LI H + H G K G
Sbjct: 18 CGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 23.2 bits (51), Expect = 5.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K + RKS LI H + H G K G
Sbjct: 18 CGKAFARKSTLIMHQRIHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 5.5
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S K + CE C ++++++ +H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 23.2 bits (51), Expect = 5.5
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S K + CE C ++++++ +H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 22.8 bits (50), Expect = 9.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K Y+R+ L H + H G K G
Sbjct: 18 CGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 23.2 bits (51), Expect = 5.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGC 76
C K ++RK LI+H ++H G
Sbjct: 16 CGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 23.2 bits (51), Expect = 5.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K ++RK LI+H ++H G
Sbjct: 16 CGKAFNRKDQLISHQRTHAGESGPSS 41
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 23.4 bits (50), Expect = 5.6
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPY 55
S K+ CE C F H L H KPY
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSG--EKPY 41
Score = 23.4 bits (50), Expect = 7.3
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 49 DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSA 81
++C K + L H SH G K + S
Sbjct: 16 EICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 23.2 bits (51), Expect = 5.6
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S G+K + C C F K +H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 23.2 bits (51), Expect = 5.6
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G+K + C C F K +H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 5.7
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S G K +GC C FSQK H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 23.3 bits (51), Expect = 5.7
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G K +GC C FSQK H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 22.9 bits (50), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCE 28
C K + +KS+L AH ++H G K G
Sbjct: 18 CGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 5.7
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 15 HLQSHEGVKKFGCEYCSARFSQKISCRVH 43
S G K F CE C RF+Q H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 23.3 bits (51), Expect = 5.7
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 64 HLQSHEGVKKFGCEYCSARFSQKISCRVH 92
S G K F CE C RF+Q H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.3 bits (51), Expect = 6.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCE 77
C K ++ S +H +SH G K G
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 23.3 bits (51), Expect = 6.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCE 28
C K ++ S +H +SH G K G
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 22.9 bits (50), Expect = 8.2
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G K F CE C F C H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 24.8 bits (53), Expect = 6.3
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKI 38
C++ + SV +HL K K+
Sbjct: 297 FCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKL 334
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 6.9
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S G K F C C F+ K + VH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 23.2 bits (51), Expect = 6.9
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G K F C C F+ K + VH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 7.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGC 76
C K + K+ LI H + H G + G
Sbjct: 18 CGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 22.8 bits (50), Expect = 8.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K + K+ LI H + H G + G
Sbjct: 18 CGKVFTHKTNLIIHQKIHTGERPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 7.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K + R L+ H + H G K G
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 22.9 bits (50), Expect = 7.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGC 76
C K + R L+ H + H G K G
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 7.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGC 27
C K + RKS L H QSH G + G
Sbjct: 18 CGKAFTRKSGLHIHQQSHTGERHSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 22.8 bits (50), Expect = 7.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S G K + C C F+ K + VH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 22.8 bits (50), Expect = 7.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G K + C C F+ K + VH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.8 bits (50), Expect = 8.4
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 49 DVCNKPYHRKSVLIAHLQSHEGVKKFGCE 77
D+C K + +S L H H K G
Sbjct: 16 DICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 8.5
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S G K + C C F+ K R+H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 22.9 bits (50), Expect = 8.5
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G K + C C F+ K R+H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 22.9 bits (50), Expect = 8.9
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S G K F C +C F K + H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 22.9 bits (50), Expect = 8.9
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G K F C +C F K + H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 22.9 bits (50), Expect = 9.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S G K F C C FS++ + VH
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 22.9 bits (50), Expect = 9.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G K F C C FS++ + VH
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCE 28
C K + RKS L H + H G K G
Sbjct: 18 CGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 15 HLQSHEGVKKFGCEYCSARFSQKISCRVH 43
S G K F CE C RF+Q H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 22.9 bits (50), Expect = 9.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 64 HLQSHEGVKKFGCEYCSARFSQKISCRVH 92
S G K F CE C RF+Q H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGC 76
C K + RK LI+H ++H G K G
Sbjct: 18 CGKAFSRKYQLISHQRTHAGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 14 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 43
+ S G K F C C F+Q S VH
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 22.9 bits (50), Expect = 9.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 63 AHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
+ S G K F C C F+Q S VH
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.136 0.449
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,417,975
Number of extensions: 68269
Number of successful extensions: 933
Number of sequences better than 10.0: 1
Number of HSP's gapped: 726
Number of HSP's successfully gapped: 439
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.0 bits)