RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13994
(97 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.6 bits (67), Expect = 0.008
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRH 47
H G K + C C ARF+Q + ++H+L+
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 29.6 bits (67), Expect = 0.008
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 68 HEGVKKFGCEYCSARFSQKISCRVHMLRH 96
H G K + C C ARF+Q + ++H+L+
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQK 31
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.9 bits (64), Expect = 0.022
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
C K + KS H+ H G++ +GC C +F K HM H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 28.5 bits (63), Expect = 0.033
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
C K + KS H+ H G++ +GC C +F K HM H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.3 bits (61), Expect = 0.057
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHRD 49
H G K + C +C F QK +H R+ D
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 26.2 bits (58), Expect = 0.13
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 68 HEGVKKFGCEYCSARFSQKISCRVHMLRH 96
H G K + C +C F QK +H R+
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.8 bits (60), Expect = 0.068
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRH 47
H G K +GC C FS+ H H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 26.8 bits (60), Expect = 0.068
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 68 HEGVKKFGCEYCSARFSQKISCRVHMLRH 96
H G K +GC C FS+ H H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 27.0 bits (60), Expect = 0.072
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHRD 49
G + F C C + F+ K +C H+ H D
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 26.3 bits (58), Expect = 0.13
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 68 HEGVKKFGCEYCSARFSQKISCRVHMLRH 96
G + F C C + F+ K +C H+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.0 bits (60), Expect = 0.076
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVKKFGCEY 29
C K ++ K L H++ H + + CE+
Sbjct: 9 CGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 26.2 bits (58), Expect = 0.15
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEY 78
C K ++ K L H++ H + + CE+
Sbjct: 9 CGKSFNFKKHLKEHMKLHSDTRDYICEF 36
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 26.2 bits (58), Expect = 0.14
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
+ G+K F C C FS+ +H RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.2 bits (58), Expect = 0.14
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
+ G+K F C C FS+ +H RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 25.5 bits (56), Expect = 0.28
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
+++ C+ C FS H H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 25.5 bits (56), Expect = 0.28
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
+++ C+ C FS H H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 112
Score = 26.4 bits (58), Expect = 0.39
Identities = 11/54 (20%), Positives = 19/54 (35%)
Query: 42 VHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR 95
V R+ P VL+ + G+K G + S F + V++
Sbjct: 8 VITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYT 61
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 23.5 bits (51), Expect = 1.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 23 KKFGCEYCSARFSQKISCRVHMLRH 47
KKF C C RF + H+ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
Score = 23.5 bits (51), Expect = 1.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 72 KKFGCEYCSARFSQKISCRVHMLRH 96
KKF C C RF + H+ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 23.4 bits (51), Expect = 1.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 23 KKFGCEYCSARFSQKISCRVHMLRH 47
K + C+ C FS+ H+ +
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQV 28
Score = 23.4 bits (51), Expect = 1.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 72 KKFGCEYCSARFSQKISCRVHMLRH 96
K + C+ C FS+ H+ +
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQV 28
Score = 23.0 bits (50), Expect = 2.1
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 1 VCNKQYHRKSVLIAHLQS-HEGVKKFGCE 28
C K + R L H++ H + C+
Sbjct: 10 SCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 23.0 bits (50), Expect = 2.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 23 KKFGCEYCSARFSQKISCRVHMLRH 47
+ F CE C+ F+++ + H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 23.0 bits (50), Expect = 2.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 72 KKFGCEYCSARFSQKISCRVHMLRH 96
+ F CE C+ F+++ + H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 22.6 bits (49), Expect = 3.1
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 23 KKFGCEYCSARFSQKISCRVHMLRH 47
K F C C FS+ H+ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 22.6 bits (49), Expect = 3.1
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 72 KKFGCEYCSARFSQKISCRVHMLRH 96
K F C C FS+ H+ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 24.2 bits (51), Expect = 3.8
Identities = 6/78 (7%), Positives = 19/78 (24%)
Query: 13 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVK 72
+ VK F + + + PY + +++ + +
Sbjct: 107 LISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKA 166
Query: 73 KFGCEYCSARFSQKISCR 90
+ R+ +
Sbjct: 167 QPDWSIALLRYFNPVGAH 184
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 21.6 bits (45), Expect = 7.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 25 FGCEYCSARFSQKISCRVHMLRH 47
F C C F +++ R+HM+ H
Sbjct: 5 FTCSVCQETFRRRMELRLHMVSH 27
Score = 21.6 bits (45), Expect = 7.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 74 FGCEYCSARFSQKISCRVHMLRH 96
F C C F +++ R+HM+ H
Sbjct: 5 FTCSVCQETFRRRMELRLHMVSH 27
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 21.1 bits (45), Expect = 9.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 2 CNKQYHRKSVLIAHLQSHEGVK 23
C K++ R L H ++H G K
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.330 0.136 0.449
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 362,620
Number of extensions: 14690
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 100
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.1 bits)