BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13998
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q7F|A Chain A, Brain Tumor Nhl Domain
pdb|1Q7F|B Chain B, Brain Tumor Nhl Domain
Length = 286
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 123/219 (56%), Gaps = 22/219 (10%)
Query: 97 FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA-VSNT 155
FT P G+AV N I+VAD++NHR+Q+F +G F +FG G + QL +P+ +A V N+
Sbjct: 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNS 88
Query: 156 NRVIVSD-SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 214
+IV++ S H++QI++ G FV KFG A L+HP + V N R+IV
Sbjct: 89 GDIIVTERSPTHQIQIYN-------QYGQFVRKFG-----ATILQHPRGVTVDNKGRIIV 136
Query: 215 SDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274
+ RV IFD NG V+ FG L+FP GV V+D+ I + D+ + +++F
Sbjct: 137 VECKVMRVIIFDQNGNVLHKFGC----SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY 192
Query: 275 DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN 313
+GQ+LR G G+G GV + SNG IL+ D N
Sbjct: 193 EGQYLRQIG----GEGITNYPIGVGINSNGEILIADNHN 227
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 42/305 (13%)
Query: 28 GTTPRSQYLQKRRL-QFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHF 86
GT +SQ ++R + K G G G FT P G+AV N I+VAD++NHR+Q+ F
Sbjct: 1 GTHMKSQIKRQRMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQI----F 56
Query: 87 DLKTNCVFL---------AFTWPRGIAV--GPDNSIVVADSSNHRVQVFQSDGTFVGKFG 135
D + F +P +AV + IV S H++Q++ G FV KFG
Sbjct: 57 DKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFG 116
Query: 136 SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA 195
A L+HP + V N R+IV + RV IFD NG V KFG +
Sbjct: 117 -----ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-------KFGC----S 160
Query: 196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD 255
LE P+ + V++ + +SD+ H V++F+ G+ + G EG +P GV ++
Sbjct: 161 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGIT----NYPIGVGINS 216
Query: 256 QGYISVGDSGNN-RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314
G I + D+ NN + IFT DGQ + A F VA+M +G++++ ++ +
Sbjct: 217 NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFD----VALMDDGSVVLASKD-Y 271
Query: 315 RIQVF 319
R+ ++
Sbjct: 272 RLYIY 276
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 26/244 (10%)
Query: 33 SQYLQKRRLQFKIGSRGSEPGCFT---WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK 89
S+ + R ++ GS G+ F P+G+AV ++ V D N+RV + +
Sbjct: 41 SEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ 99
Query: 90 TNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHY 149
T F +P G+AV ++ VAD N+RV + G L P
Sbjct: 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-----LNDPDG 154
Query: 150 IAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209
+AV N+ V V+D++N+RV + +S+ V F + P IAV
Sbjct: 155 VAVDNSGNVYVTDTDNNRVVKLEA-----ESNNQVVLPFT-------DITAPWGIAVDEA 202
Query: 210 NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRI 269
V V++ N ++V T G L P VAVD + V D GN+R+
Sbjct: 203 GTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-----LNTPLAVAVDSDRTVYVADRGNDRV 257
Query: 270 QIFT 273
T
Sbjct: 258 VKLT 261
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQ 256
L P +AV V V+D NN V + N + + F L +P G+AVD Q
Sbjct: 66 LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-------LNYPEGLAVDTQ 118
Query: 257 GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGL---EGVAVMSNGNILVCDREN 313
G + V D GNNR+ A G F GL +GVAV ++GN+ V D +N
Sbjct: 119 GAVYVADRGNNRVVKL--------AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN 170
Query: 314 HRI 316
+R+
Sbjct: 171 NRV 173
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 82/217 (37%), Gaps = 28/217 (12%)
Query: 11 NSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF---TWPRGIAVGPDN 67
N + Q L V G G V T R + GS F +P G+AV
Sbjct: 64 NGLYQPQGLAVDGAGTVYVTD----FNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG 119
Query: 68 SIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVF--Q 125
++ VAD N+RV +T F P G+AV ++ V D+ N+RV +
Sbjct: 120 AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179
Query: 126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFV 185
S+ V F + P IAV V V++ N ++V + G + F
Sbjct: 180 SNNQVVLPF-------TDITAPWGIAVDEAGTVYVTEHNTNQVVKL-LAGSTTSTVLPFT 231
Query: 186 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 222
G L P +AV + V V+D N RV
Sbjct: 232 G-----------LNTPLAVAVDSDRTVYVADRGNDRV 257
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 108/260 (41%), Gaps = 32/260 (12%)
Query: 60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNH 119
G+A PD + + S + V++ + L + + RG+A PD + + S +
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-VRGVAFSPDGQTIASASDDK 407
Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ 179
V+++ +G + G +A S ++ I S S++ V++++ NG++ Q
Sbjct: 408 TVKLWNRNGQLLQTL------TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ 461
Query: 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG 239
T G S+ +A S + I S S++ V++++ NG+++ +
Sbjct: 462 ---TLTGHSSSV----------RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---- 504
Query: 240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVA 299
G RGVA G S + ++++ +GQ L+ G + GVA
Sbjct: 505 --TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVWGVA 556
Query: 300 VMSNGNILVCDRENHRIQVF 319
+G + + ++++
Sbjct: 557 FSPDGQTIASASSDKTVKLW 576
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 31/219 (14%)
Query: 101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
RG+A PD + + S + V+++ +G + G +A S + I
Sbjct: 20 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVWGVAFSPDGQTIA 73
Query: 161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
S S++ V++++ NG++ Q T G S+ +A S + I S S++
Sbjct: 74 SASDDKTVKLWNRNGQLLQ---TLTGHSSSV----------RGVAFSPDGQTIASASDDK 120
Query: 221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
V++++ NG+++ + G GVA G S + ++++ +GQ L+
Sbjct: 121 TVKLWNRNGQLLQTL------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 174
Query: 281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G + GVA +G + ++ ++++
Sbjct: 175 TL------TGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 106/260 (40%), Gaps = 32/260 (12%)
Query: 60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNH 119
G+A PD + + S + V++ + L + + RG+A PD + + S +
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-VRGVAFSPDGQTIASASDDK 243
Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ 179
V+++ +G + G + +A + I S S++ V++++ NG++ Q
Sbjct: 244 TVKLWNRNGQLLQTL------TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ 297
Query: 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG 239
T G S+ +A S + I S S++ V++++ NG+ + +
Sbjct: 298 ---TLTGHSSSVWG----------VAFSPDGQTIASASDDKTVKLWNRNGQHLQTL---- 340
Query: 240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVA 299
G GVA G S + ++++ +GQ L+ G + GVA
Sbjct: 341 --TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVRGVA 392
Query: 300 VMSNGNILVCDRENHRIQVF 319
+G + ++ ++++
Sbjct: 393 FSPDGQTIASASDDKTVKLW 412
>pdb|3FVZ|A Chain A, Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Amidating
Lyase (Pal)
pdb|3FW0|A Chain A, Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Amidating
Lyase (Pal) Bound To Alpha-Hydroxyhippuric Acid (Non-
Peptidic Substrate)
Length = 329
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 35/243 (14%)
Query: 54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA------------FTWPR 101
F P G+++ D + V D + H+V PH K + + F P
Sbjct: 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPH--SKEGPLLILGRSMQPGSDQNHFCQPT 146
Query: 102 GIAVGPDN-SIVVADS-SNHRVQVFQSDGTFVGKFGSMGN----KAGQLEHPHYIA-VSN 154
+AV P ++ V+D N R+ F G FV ++G + + GQ PH +A V +
Sbjct: 147 DVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH 206
Query: 155 TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH-PHYIAVSNTNRVI 213
+++ V+D N R+Q F + + F + K S G + + P ++ N
Sbjct: 207 LDQLCVADRENGRIQCFKTDTKEFVRE----IKHASFGRNVFAISYIPGFLFAVNGKPYF 262
Query: 214 VSDSNNHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
+ VQ F +N G +I F P + + G + +GD+ N +
Sbjct: 263 ---GDQEPVQGFVMNFSSGEIIDVF---KPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316
Query: 271 IFT 273
FT
Sbjct: 317 KFT 319
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-----VITSFGSEGSEEGQLKFPRGVAVD- 254
PH +++ V+D H+V D + + ++ GS++ P VAV+
Sbjct: 93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP 152
Query: 255 DQGYISVGDSG-NNRIQIFTPDGQFLRAFGCWGSGD----GEFKGLEGVAVMSNGNIL-V 308
G + V D N+RI F+P G+F+ +G SG G+F +A++ + + L V
Sbjct: 153 STGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV 212
Query: 309 CDRENHRIQVF 319
DREN RIQ F
Sbjct: 213 ADRENGRIQCF 223
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNG---RVFQSDGTF 184
+F+ GS Q+ HP IAV R + +D+ R+++ +NG ++ S+
Sbjct: 376 SFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLE 435
Query: 185 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQ 244
+ + G + + + R + S+ RV + V TS G
Sbjct: 436 EPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD--RVVL------VNTSLG-------- 479
Query: 245 LKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDG 276
+P G+A+D D+G I GD+ ++I++ DG
Sbjct: 480 --WPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 510
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNG---RVFQSDGTF 184
+F+ GS Q+ HP IAV R + +D+ R+++ +NG ++ S+
Sbjct: 368 SFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLE 427
Query: 185 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQ 244
+ + G + + + R + S+ RV + V TS G
Sbjct: 428 EPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD--RVVL------VNTSLG-------- 471
Query: 245 LKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDG 276
+P G+A+D D+G I GD+ ++I++ DG
Sbjct: 472 --WPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 502
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 216 DSNNHRVQIFDVNGRVITSFGSEGSE-----EGQLKFPRGVAVDDQGY-ISVGDSGNNRI 269
D ++R+ D++ + I+ GS E L +P G+AVD G + D+G NRI
Sbjct: 50 DVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRI 109
Query: 270 QIFTPDGQFLRAFGCWGSGDG 290
++ DGQ R W D
Sbjct: 110 EVSKLDGQH-RQVLVWKDLDS 129
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 216 DSNNHRVQIFDVNGRVITSFGSEGSE-----EGQLKFPRGVAVDDQGY-ISVGDSGNNRI 269
D ++R+ D++ + I+ GS E L +P G+AVD G + D+G NRI
Sbjct: 45 DVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRI 104
Query: 270 QIFTPDGQFLRAFGCWGSGD 289
++ DGQ R W D
Sbjct: 105 EVSKLDGQH-RQVLVWKDLD 123
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 216 DSNNHRVQIFDVNGRVITSFGSEGSE-----EGQLKFPRGVAVDDQGY-ISVGDSGNNRI 269
D ++R+ D++ + I+ GS E L +P G+AVD G + D+G NRI
Sbjct: 43 DVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRI 102
Query: 270 QIFTPDGQFLRAFGCWGSGDG 290
++ DGQ R W D
Sbjct: 103 EVSKLDGQH-RQVLVWKDLDS 122
>pdb|3V9F|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|C Chain C, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|D Chain D, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
Length = 781
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 230 RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFG-----C 284
+VI + + S+ + F R +A D +G +G G + I+TPD Q +R F C
Sbjct: 480 KVIHHYDTSNSQLLE-NFVRSIAQDSEGRFWIGTFGGG-VGIYTPDXQLVRKFNQYEGFC 537
Query: 285 WGSGDGEFKGLEGVAVMSNGNILVC--DRENHRIQVF 319
+ + ++ +G ++ G LVC N QVF
Sbjct: 538 SNTINQIYRSSKGQXWLATGEGLVCFPSARNFDYQVF 574
>pdb|3HFQ|A Chain A, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118.
pdb|3HFQ|B Chain B, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118
Length = 347
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 33/196 (16%)
Query: 90 TNCVFLAFTW-PRGIAVGPDNSIVVADSSNHR--VQVFQSDGTFVGKFGSMGNKAGQLEH 146
TN LA T P +A+ + + D + + +Q DG K ++
Sbjct: 31 TNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP--- 87
Query: 147 PHYIAVSNTNRVIVSDSNNHR----VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH 202
P Y+AV +++ S +N H+ V +G + +D G + G H H
Sbjct: 88 PAYVAVDEARQLVYS-ANYHKGTAEVXKIAADGALTLTDTVQHSGHGPRPEQDG--SHIH 144
Query: 203 YIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVG 262
Y ++ NR+ V D + +V +++V S+ GQL +Q ++
Sbjct: 145 YTDLTPDNRLAVIDLGSDKVYVYNV------------SDAGQLS--------EQSVLTXE 184
Query: 263 DSGNNRIQIFTPDGQF 278
R +F+PDGQ+
Sbjct: 185 AGFGPRHLVFSPDGQY 200
>pdb|3OM5|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
Length = 456
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 120 RVQVFQSDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF 178
+V++F +D + GK +G Q+ ++ N N + V +++ IFD +G+++
Sbjct: 155 KVRLFYTD--YSGKQYGKQTLTTAQVN----MSQPNDNTLKVDGVEDYK-SIFDGDGKIY 207
Query: 179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 228
Q+ F+ + G A L PHYI + N H+ +F+ N
Sbjct: 208 QTVQQFIDEGGYDTGDAHTLRDPHYI-----------EDNGHKYLVFEAN 246
>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
Length = 430
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVIT-----SFGSEGSEEGQLK------ 246
+++P Y S+ D NH ++I GRV T S G+ G +G L+
Sbjct: 340 VKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFN 399
Query: 247 FPRGVAVDDQGY-ISVGDSGNNRIQ 270
P G+ D++ +GD N RI+
Sbjct: 400 HPEGIVYDEERECFFIGDRENRRIR 424
>pdb|3OM6|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
Length = 456
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 120 RVQVFQSDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF 178
+V++F +D + GK +G Q+ ++ N N + V +++ IFD +G+++
Sbjct: 155 KVRLFYTD--YSGKQYGKQTLTTAQVN----MSQPNDNTLKVDGVEDYK-SIFDGDGKIY 207
Query: 179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 228
Q+ F+ + G+ L PHYI + N H+ +F+ N
Sbjct: 208 QTVQQFIDEGGADTGDNHTLRDPHYI-----------EDNGHKYLVFEAN 246
>pdb|3BWS|A Chain A, Crystal Structure Of The Leptospiral Antigen Lp49
pdb|3BWS|B Chain B, Crystal Structure Of The Leptospiral Antigen Lp49
Length = 433
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 78/202 (38%), Gaps = 50/202 (24%)
Query: 100 PRGIAVGPD-NSIVVA-------DSSNHRVQVFQSDG-TFVGKFGSMGNKAGQLEHPHYI 150
PRG+ + D + +A +S R+ ++ D + G GNK H +
Sbjct: 256 PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSXDKEKLIDTIGPPGNKR------HIV 309
Query: 151 AVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 210
+ + N++ VSD +++++D+ + Q K P+ IA+S
Sbjct: 310 SGNTENKIYVSDXCCSKIEVYDLKEKKVQKSIPVFDK-------------PNTIALSPDG 356
Query: 211 RVIVSDSN--NH-------------RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD- 254
+ + NH +V + D + F G++ P G+ V
Sbjct: 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ------PTGLDVSP 410
Query: 255 DQGYISVGDSGNNRIQIFTPDG 276
D Y+ + D +++I+++ DG
Sbjct: 411 DNRYLVISDFLDHQIRVYRRDG 432
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 153 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G++ D+ + V + G++ I++F PDG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMSFDEDNNLLVANWGSSHIEVFGPDG 254
>pdb|2A22|A Chain A, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
pdb|2A22|B Chain B, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
Length = 215
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA 195
I+ + H++++F+ NG++F + GT G F ++ A
Sbjct: 144 ILVTGHTHKLRVFEKNGKLFLNPGTATGAFSALTPDA 180
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 154 NTNRVIVSDSNNHRVQIFDVNG-----RVFQSDGTFVGKFGSMGNKAGQLEHPHYI-AVS 207
N N ++S S++H + ++D+N RV + F G + + A L H +V+
Sbjct: 194 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 253
Query: 208 NTNRVIVSDSNN 219
+ ++++ D+ N
Sbjct: 254 DDQKLMIWDTRN 265
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 154 NTNRVIVSDSNNHRVQIFDVNG-----RVFQSDGTFVGKFGSMGNKAGQLEHPHYI-AVS 207
N N ++S S++H + ++D+N RV + F G + + A L H +V+
Sbjct: 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 251
Query: 208 NTNRVIVSDSNN 219
+ ++++ D+ N
Sbjct: 252 DDQKLMIWDTRN 263
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 154 NTNRVIVSDSNNHRVQIFDVNG-----RVFQSDGTFVGKFGSMGNKAGQLEHPHYI-AVS 207
N N ++S S++H + ++D+N RV + F G + + A L H +V+
Sbjct: 196 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 255
Query: 208 NTNRVIVSDSNN 219
+ ++++ D+ N
Sbjct: 256 DDQKLMIWDTRN 267
>pdb|3OM4|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
Length = 456
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 120 RVQVFQSDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF 178
+V++F +D + GK +G Q+ ++ N N + V +++ IFD +G+++
Sbjct: 155 KVRLFYTD--YSGKQYGKQTLTTAQVN----MSQPNDNTLKVDGVEDYK-SIFDGDGKIY 207
Query: 179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 228
Q+ F+ + G L PHYI + N H+ +F+ N
Sbjct: 208 QTVQQFIDEGGYDTGDNHTLRDPHYI-----------EDNGHKYLVFEAN 246
>pdb|3OM2|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
D257a
Length = 456
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 120 RVQVFQSDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF 178
+V++F +D + GK +G Q+ ++ N N + V +++ IFD +G+++
Sbjct: 155 KVRLFYTD--YSGKQYGKQTLTTAQVN----MSQPNDNTLKVDGVEDYK-SIFDGDGKIY 207
Query: 179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 228
Q+ F+ + G L PHYI + N H+ +F+ N
Sbjct: 208 QTVQQFIDEGGYDTGDNHTLRAPHYI-----------EDNGHKYLVFEAN 246
>pdb|3OM7|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
Length = 456
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 120 RVQVFQSDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF 178
+V++F +D + GK +G Q+ ++ N N + V +++ IFD +G+++
Sbjct: 155 KVRLFYTD--YSGKQYGKQTLTTAQVN----MSQPNDNTLKVDGVEDYK-SIFDGDGKIY 207
Query: 179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 228
Q+ F+ + G L PHYI + N H+ +F+ N
Sbjct: 208 QTVQQFIDEGGWDTGDNHTLRDPHYI-----------EDNGHKYLVFEAN 246
>pdb|1UZ5|A Chain A, The Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikosii
Length = 402
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 193 NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVA 252
NK P +S N ++ + QI+D+NGR + +E EG GVA
Sbjct: 173 NKVKVFRKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIF---MGVA 229
Query: 253 VDDQ 256
DD+
Sbjct: 230 RDDK 233
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 153 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANHGSSHIEVFGPDG 254
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 153 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANYGSSHIEVFGPDG 254
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 153 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIEVFGPDG 254
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 153 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIEVFGPDG 254
>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant
Length = 314
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 155 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 200
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIEVFGPDG 256
>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase
(Dfpase), Mutant D229n N120D
Length = 314
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 155 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 200
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGA---NGMDFDEDNNLLVANWGSSHIEVFGPDG 256
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 153 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIEVFGPDG 254
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 153 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIEVFGPDG 254
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 155 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 200
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIEVFGPDG 256
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 153 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANLGSSHIEVFGPDG 254
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV+++ ++
Sbjct: 153 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANFGSSHIEVFGPDG 254
>pdb|1BRY|Y Chain Y, Bryodin Type I Rip
pdb|1BRY|Z Chain Z, Bryodin Type I Rip
Length = 248
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 181 DGTFVGKFG--SMGNKAGQLEHPHYIAVSNTNR----VIVSDSNNHRVQIFDVNGRVITS 234
D TF+ S+ N L IA +N + V++ D NN RV I + + RV+TS
Sbjct: 177 DKTFLPSLATISLENNWSALSKQIQIASTNNGQFESPVVLIDGNNQRVSITNASARVVTS 236
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P IAV + N ++IV+++ ++
Sbjct: 155 IYCFTTDGQMIQVDTAF--------------QFPDGIAVRHMNDGRPYQLIVAETPTKKL 200
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGA---NGMDFDEDNNLLVANWGSSHIEVFGPDG 256
>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase),
E21q,N120d,N175d,D229n Mutant
Length = 314
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P IAV + N ++IV+++ ++
Sbjct: 155 IYCFTTDGQMIQVDTAF--------------QFPDGIAVRHMNDGRPYQLIVAETPTKKL 200
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGA---NGMDFDEDNNLLVANWGSSHIEVFGPDG 256
>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n
Mutant
Length = 314
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P IAV + N ++IV+++ ++
Sbjct: 155 IYCFTTDGQMIQVDTAF--------------QFPDGIAVRHMNDGRPYQLIVAETPTKKL 200
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGA---NGMDFDEDNNLLVANWGSSHIEVFGPDG 256
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P IAV + N ++IV+++ ++
Sbjct: 153 IYCFTTDGQMIQVDTAF--------------QFPDGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIEVFGPDG 254
>pdb|3HLH|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV++ ++
Sbjct: 155 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAEMPTKKL 200
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIEVFGPDG 256
>pdb|3HLI|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 27/119 (22%)
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ F +G++ Q D F + P+ IAV + N ++IV++ ++
Sbjct: 155 IYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVAEMPTKKL 200
Query: 223 QIFDVNGRVITSFGS-----EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+D+ G G+ EG G+ D+ + V + G++ I++F PDG
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIEVFGPDG 256
>pdb|2GBW|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBX|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
Length = 454
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 107 PDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 166
P + I + + + QSDGTF S ++ Q+ H +DS N
Sbjct: 50 PGDFITTYMAEDKVILSHQSDGTFRAFINSCSHRGNQICH--------------ADSGNA 95
Query: 167 RVQIFDVNGRVFQSDGTFV 185
+ + + +G VF DG+ V
Sbjct: 96 KAFVCNYHGWVFGQDGSLV 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,903,301
Number of Sequences: 62578
Number of extensions: 428134
Number of successful extensions: 979
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 92
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)