BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13998
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/283 (43%), Positives = 168/283 (59%), Gaps = 20/283 (7%)
Query: 46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV-----FLAFTWP 100
G +G++ G WPRGI + DSSNHRV V FD V + A
Sbjct: 703 GRKGAKDGELNWPRGICALSGGLVATCDSSNHRVCV----FDKDGKFVRQFGGYGAGAGQ 758
Query: 101 RGIAVGPDNS---IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
A G +S ++V+D NHR+ VF +G + FG G + +P +AV +
Sbjct: 759 LDSAAGLASSKLRVIVSDRYNHRISVFGLEGDHLFSFGGHGQGNAKFNNPWGVAVDDLGS 818
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSD 216
+ V+D +NHRVQ+FD NG+ F+ KFGS G+ GQL P +IAVS T+ V VSD
Sbjct: 819 IYVADKDNHRVQVFDKNGQ-------FIAKFGSFGHLPGQLNSPLFIAVSRVTHHVYVSD 871
Query: 217 SNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
S+NHR+ +FD +G + SFG EG GQ KFPRG+A+D Q + + DSGNNRIQ+F G
Sbjct: 872 SSNHRISVFDPHGVHLFSFGEEGFHGGQFKFPRGIAIDSQENLIIADSGNNRIQVFDAQG 931
Query: 277 QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
QF+ +FG WG G G+ KG+E V V ++G+I+V DRENHRIQ+F
Sbjct: 932 QFVSSFGTWGGGAGQLKGVEDVCVTADGSIVVTDRENHRIQIF 974
>sp|F6QEU4|LIN41_XENTR E3 ubiquitin-protein ligase TRIM71 OS=Xenopus tropicalis GN=trim71
PE=3 SV=1
Length = 814
Score = 187 bits (475), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 152/282 (53%), Gaps = 12/282 (4%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
G G G P G+ V + I+VAD SN+RVQ+ P L F
Sbjct: 540 LSFGGEGDHDGKLCRPWGVCVDREGYIIVADRSNNRVQIFKPCGTFHHKFGSLGSRPGQF 599
Query: 98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
P G+A IVVAD NHRVQ+F +G F+ KFG G K GQ +P +AV++ +
Sbjct: 600 DRPAGVACDNSRRIVVADKDNHRVQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK 659
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
++VSD+ NHRVQ+F DGTF+ K+G G + P +A S ++V+D
Sbjct: 660 ILVSDTRNHRVQLFG-------PDGTFLNKYGFEGALWKHFDSPRGVAFSQDGYLVVTDF 712
Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
NNHR+ I + + G+EG+ GQ P+GVAVD +G I V DS N+R+QIF P+G
Sbjct: 713 NNHRLLIIKPDCQSAHFLGTEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFEPNGS 772
Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FL FG GSG G+ G+AV +G I+V D N+RI F
Sbjct: 773 FLCKFGTQGSGFGQMDRPSGIAVTPDGTIVVVDFGNNRILAF 814
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 113/217 (52%), Gaps = 16/217 (7%)
Query: 103 IAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
+ +GPD ++ A+ S+ Q +GT++ + QLE H I+V N+ I
Sbjct: 473 LVMGPDGNLFAAEVSD------QLNGTYLVSYRP------QLEGEHLISVMVCNQHI--- 517
Query: 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 222
N ++ +GR + G FG G+ G+L P + V +IV+D +N+RV
Sbjct: 518 -ENSPFKVNVKSGRCYLGIGLPTLSFGGEGDHDGKLCRPWGVCVDREGYIIVADRSNNRV 576
Query: 223 QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
QIF G FGS GS GQ P GVA D+ I V D N+R+QIFT +GQFL F
Sbjct: 577 QIFKPCGTFHHKFGSLGSRPGQFDRPAGVACDNSRRIVVADKDNHRVQIFTFEGQFLLKF 636
Query: 283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G G+ +G+F VAV S G ILV D NHR+Q+F
Sbjct: 637 GEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRVQLF 673
>sp|Q1PSW8|LIN41_MOUSE E3 ubiquitin-protein ligase TRIM71 OS=Mus musculus GN=Trim71 PE=1
SV=1
Length = 855
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 155/282 (54%), Gaps = 12/282 (4%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
GS G G P G++V + I+VAD SN+R+QV P L F
Sbjct: 581 LSFGSEGDGEGKLCRPWGVSVDKEGFIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQF 640
Query: 98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
P G+A I+VAD NHR+Q+F +G F+ KFG G K GQ +P +AV++ +
Sbjct: 641 DRPAGVACDASRRIIVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK 700
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
++VSD+ NHR+Q+F DG F+ K+G G+ + P +A +N ++V+D
Sbjct: 701 ILVSDTRNHRIQLFG-------PDGVFLNKYGFEGSLWKHFDSPRGVAFNNEGHLVVTDF 753
Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
NNHR+ + + + GSEGS GQ P+GVAVD +G I V DS N+R+Q+F +G
Sbjct: 754 NNHRLLVIHPDCQSARFLGSEGSGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFEANGS 813
Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FL FG GSG G+ G+AV +G I+V D N+RI +F
Sbjct: 814 FLCKFGAQGSGFGQMDRPSGIAVTPDGLIVVVDFGNNRILIF 855
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 120/203 (59%), Gaps = 13/203 (6%)
Query: 123 VFQSDGTFVG------KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR 176
V +S ++VG FGS G+ G+L P ++V +IV+D +N+R+Q
Sbjct: 566 VVKSGRSYVGIGLPGLSFGSEGDGEGKLCRPWGVSVDKEGFIIVADRSNNRIQ------- 618
Query: 177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFG 236
VF+ G+F KFG++G++ GQ + P +A + R+IV+D +NHR+QIF G+ + FG
Sbjct: 619 VFKPCGSFHHKFGTLGSRPGQFDRPAGVACDASRRIIVADKDNHRIQIFTFEGQFLLKFG 678
Query: 237 SEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE 296
+G++ GQ +P VAV+ +G I V D+ N+RIQ+F PDG FL +G GS F
Sbjct: 679 EKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGSLWKHFDSPR 738
Query: 297 GVAVMSNGNILVCDRENHRIQVF 319
GVA + G+++V D NHR+ V
Sbjct: 739 GVAFNNEGHLVVTDFNNHRLLVI 761
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 115/217 (52%), Gaps = 16/217 (7%)
Query: 103 IAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
+ +GPD ++ A+ S+ Q +GT++ + QLE H ++V+ N+ I
Sbjct: 514 VVLGPDGNLFGAEVSD------QQNGTYIVSYRP------QLEGEHLVSVTLYNQHI--- 558
Query: 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 222
N ++ +GR + G FGS G+ G+L P ++V +IV+D +N+R+
Sbjct: 559 -ENSPFKVVVKSGRSYVGIGLPGLSFGSEGDGEGKLCRPWGVSVDKEGFIIVADRSNNRI 617
Query: 223 QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
Q+F G FG+ GS GQ P GVA D I V D N+RIQIFT +GQFL F
Sbjct: 618 QVFKPCGSFHHKFGTLGSRPGQFDRPAGVACDASRRIIVADKDNHRIQIFTFEGQFLLKF 677
Query: 283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G G+ +G+F VAV S G ILV D NHRIQ+F
Sbjct: 678 GEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLF 714
>sp|Q1PRL4|LIN41_CHICK E3 ubiquitin-protein ligase TRIM71 OS=Gallus gallus GN=TRIM71 PE=2
SV=1
Length = 876
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 152/282 (53%), Gaps = 12/282 (4%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
GS G G P G++V + I+VAD SN+R+QV P L F
Sbjct: 602 LSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGTFHHKFGTLGSRPGQF 661
Query: 98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
P G+A IVVAD NHR+Q+F +G F+ KFG G K GQ +P +AV+ +
Sbjct: 662 DRPAGVACDVSRRIVVADKDNHRIQIFTFEGQFILKFGEKGTKNGQFNYPWDVAVNAEGK 721
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
++VSD+ NHRVQ+F DG F+ K+G G + P + ++ ++V+D
Sbjct: 722 ILVSDTRNHRVQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVTFNHEGHLVVTDF 774
Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
NNHR+ + + + GSEGS GQ P+GVAVD +G I V DS N+R+QIF +G
Sbjct: 775 NNHRLLVIHADCQSARFLGSEGSGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFESNGS 834
Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FL FG GSG G+ G+AV +G I+V D N+RI VF
Sbjct: 835 FLCKFGAQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILVF 876
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 102 GIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS 161
+ +GPD ++ AD S+ Q +GT++ + QLE H ++V N+ I
Sbjct: 534 AVVMGPDGNLFGADVSD------QQNGTYLVSYRP------QLEGEHLVSVMMCNQHI-- 579
Query: 162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 221
N ++ +GR + G FGS G+ G+L P ++V +IV+D +N+R
Sbjct: 580 --ENSPFKVVVKSGRSYIGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNR 637
Query: 222 VQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRA 281
+Q+F G FG+ GS GQ P GVA D I V D N+RIQIFT +GQF+
Sbjct: 638 IQVFKPCGTFHHKFGTLGSRPGQFDRPAGVACDVSRRIVVADKDNHRIQIFTFEGQFILK 697
Query: 282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FG G+ +G+F VAV + G ILV D NHR+Q+F
Sbjct: 698 FGEKGTKNGQFNYPWDVAVNAEGKILVSDTRNHRVQLF 735
>sp|E1BJS7|LIN41_BOVIN E3 ubiquitin-protein ligase TRIM71 OS=Bos taurus GN=TRIM71 PE=3
SV=2
Length = 868
Score = 184 bits (467), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 154/282 (54%), Gaps = 12/282 (4%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
GS G G P G++V + IVVAD SN+R+QV P L F
Sbjct: 594 LSFGSEGDSDGKLCRPWGVSVDKEGYIVVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQF 653
Query: 98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
P G+A IVVAD NHR+Q+F +G F+ KFG G K GQ +P +AV++ +
Sbjct: 654 DRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK 713
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
++VSD+ NHR+Q+F DG F+ K+G G + P +A ++ ++V+D
Sbjct: 714 ILVSDTRNHRIQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDF 766
Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
NNHR+ + + + GSEG+ GQ P+GVAVD +G I V DS N+R+Q+F +G
Sbjct: 767 NNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGS 826
Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FL FG GSG G+ G+AV +G I+V D N+RI +F
Sbjct: 827 FLCKFGAQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILIF 868
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 118/203 (58%), Gaps = 13/203 (6%)
Query: 123 VFQSDGTFVG------KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR 176
V +S ++VG FGS G+ G+L P ++V ++V+D +N+R+Q
Sbjct: 579 VVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIVVADRSNNRIQ------- 631
Query: 177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFG 236
VF+ G F KFG++G++ GQ + P +A + R++V+D +NHR+QIF G+ + FG
Sbjct: 632 VFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFG 691
Query: 237 SEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE 296
+G++ GQ +P VAV+ +G I V D+ N+RIQ+F PDG FL +G G+ F
Sbjct: 692 EKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPR 751
Query: 297 GVAVMSNGNILVCDRENHRIQVF 319
GVA G+++V D NHR+ V
Sbjct: 752 GVAFNHEGHLVVTDFNNHRLLVI 774
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 115/218 (52%), Gaps = 16/218 (7%)
Query: 102 GIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS 161
+ +GPD ++ A+ S+ Q +GT+V + QLE H ++V+ N+ I
Sbjct: 526 AVVLGPDGNLFGAEVSD------QQNGTYVVSYRP------QLEGEHLVSVTLCNQHI-- 571
Query: 162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 221
N ++ +GR + G FGS G+ G+L P ++V ++V+D +N+R
Sbjct: 572 --ENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIVVADRSNNR 629
Query: 222 VQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRA 281
+Q+F G FG+ GS GQ P GVA D I V D N+RIQIFT +GQFL
Sbjct: 630 IQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLK 689
Query: 282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FG G+ +G+F VAV S G ILV D NHRIQ+F
Sbjct: 690 FGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLF 727
>sp|Q2Q1W2|LIN41_HUMAN E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1
SV=1
Length = 868
Score = 184 bits (466), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 154/282 (54%), Gaps = 12/282 (4%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
GS G G P G++V + I+VAD SN+R+QV P L F
Sbjct: 594 LSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQF 653
Query: 98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
P G+A IVVAD NHR+Q+F +G F+ KFG G K GQ +P +AV++ +
Sbjct: 654 DRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK 713
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
++VSD+ NHR+Q+F DG F+ K+G G + P +A ++ ++V+D
Sbjct: 714 ILVSDTRNHRIQLFG-------PDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDF 766
Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
NNHR+ + + + GSEG+ GQ P+GVAVD +G I V DS N+R+Q+F +G
Sbjct: 767 NNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGS 826
Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FL FG GSG G+ G+A+ +G I+V D N+RI VF
Sbjct: 827 FLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 118/203 (58%), Gaps = 13/203 (6%)
Query: 123 VFQSDGTFVG------KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR 176
V +S ++VG FGS G+ G+L P ++V +IV+D +N+R+Q
Sbjct: 579 VVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQ------- 631
Query: 177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFG 236
VF+ G F KFG++G++ GQ + P +A + R++V+D +NHR+QIF G+ + FG
Sbjct: 632 VFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFG 691
Query: 237 SEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE 296
+G++ GQ +P VAV+ +G I V D+ N+RIQ+F PDG FL +G G+ F
Sbjct: 692 EKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPR 751
Query: 297 GVAVMSNGNILVCDRENHRIQVF 319
GVA G+++V D NHR+ V
Sbjct: 752 GVAFNHEGHLVVTDFNNHRLLVI 774
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 115/218 (52%), Gaps = 16/218 (7%)
Query: 102 GIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS 161
+ +GPD ++ A+ S+ Q +GT+V + QLE H ++V+ N+ I
Sbjct: 526 AVVLGPDGNLFGAEVSD------QQNGTYVVSYRP------QLEGEHLVSVTLCNQHI-- 571
Query: 162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 221
N ++ +GR + G FGS G+ G+L P ++V +IV+D +N+R
Sbjct: 572 --ENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNR 629
Query: 222 VQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRA 281
+Q+F G FG+ GS GQ P GVA D I V D N+RIQIFT +GQFL
Sbjct: 630 IQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLK 689
Query: 282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FG G+ +G+F VAV S G ILV D NHRIQ+F
Sbjct: 690 FGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLF 727
>sp|D3ZVM4|LIN41_RAT E3 ubiquitin-protein ligase TRIM71 OS=Rattus norvegicus GN=Trim71
PE=3 SV=1
Length = 855
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 154/282 (54%), Gaps = 12/282 (4%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----F 97
GS G G P G++V + I+VAD SN+R+QV P L F
Sbjct: 581 LSFGSEGDGEGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQF 640
Query: 98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
P G+A IVVAD NHR+Q+F +G F+ KFG G K GQ +P +AV++ +
Sbjct: 641 DRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK 700
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
++VSD+ NHR+Q+F DG F+ K+G G+ + P +A ++ ++V+D
Sbjct: 701 ILVSDTRNHRIQLFG-------PDGVFLNKYGFEGSLWKHFDSPRGVAFNHEGHLVVTDF 753
Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
NNHR+ + + + GSEG+ GQ P+GVAVD +G I V DS N+R+Q+F +G
Sbjct: 754 NNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFEANGS 813
Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FL FG GSG G+ G+AV G I+V D N+RI +F
Sbjct: 814 FLCKFGAQGSGFGQMDRPSGIAVTPEGLIVVVDFGNNRILIF 855
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 114/192 (59%), Gaps = 7/192 (3%)
Query: 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGK 187
G V FGS G+ G+L P ++V +IV+D +N+R+Q VF+ G+F K
Sbjct: 577 GLPVLSFGSEGDGEGKLCRPWGVSVDKEGYIIVADRSNNRIQ-------VFKPCGSFHHK 629
Query: 188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKF 247
FG++G++ GQ + P +A + R++V+D +NHR+QIF G+ + FG +G++ GQ +
Sbjct: 630 FGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNY 689
Query: 248 PRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL 307
P VAV+ +G I V D+ N+RIQ+F PDG FL +G GS F GVA G+++
Sbjct: 690 PWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGSLWKHFDSPRGVAFNHEGHLV 749
Query: 308 VCDRENHRIQVF 319
V D NHR+ V
Sbjct: 750 VTDFNNHRLLVI 761
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 116/217 (53%), Gaps = 16/217 (7%)
Query: 103 IAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
+ +GPD ++ A+ S+ Q +GT+V + QLE H ++V+ N+ I
Sbjct: 514 VVLGPDGNLFGAEVSD------QQNGTYVVSYRP------QLEGEHLVSVTLYNQHI--- 558
Query: 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 222
N ++ +GR + G V FGS G+ G+L P ++V +IV+D +N+R+
Sbjct: 559 -ENSPFKVVVKSGRSYVGIGLPVLSFGSEGDGEGKLCRPWGVSVDKEGYIIVADRSNNRI 617
Query: 223 QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
Q+F G FG+ GS GQ P GVA D I V D N+RIQIFT +GQFL F
Sbjct: 618 QVFKPCGSFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKF 677
Query: 283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G G+ +G+F VAV S G ILV D NHRIQ+F
Sbjct: 678 GEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLF 714
>sp|E7FAM5|LIN41_DANRE E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio GN=trim71 PE=2
SV=1
Length = 824
Score = 181 bits (458), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 135/220 (61%), Gaps = 7/220 (3%)
Query: 100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159
P GI V + +VVAD SN+RVQ+F+ GTF KFG++G++ GQ + P +A + R+I
Sbjct: 565 PWGICVDKEGYVVVADRSNNRVQIFKPCGTFHHKFGTLGSRPGQFDRPAGVACDSQRRII 624
Query: 160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 219
V+D +NHR+QIF DG F+ KFG G K GQ +P +AV+ +++VSD+ N
Sbjct: 625 VADKDNHRIQIFTF-------DGQFLLKFGEKGTKNGQFNYPWDVAVNFEGKILVSDTRN 677
Query: 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFL 279
HRVQ+F +G + +G EG+ PRGVA + +G++ V D N+R+ + PD Q
Sbjct: 678 HRVQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFNQEGHLVVTDFNNHRLLVIRPDCQSA 737
Query: 280 RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
R G G+G+G+F +GVAV I+V D NHRIQVF
Sbjct: 738 RFLGSEGTGNGQFLRPQGVAVDQEDRIIVADSRNHRIQVF 777
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 150/279 (53%), Gaps = 12/279 (4%)
Query: 46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----FTWP 100
G G G P GI V + +VVAD SN+RVQ+ P L F P
Sbjct: 553 GGEGDGDGQLCRPWGICVDKEGYVVVADRSNNRVQIFKPCGTFHHKFGTLGSRPGQFDRP 612
Query: 101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
G+A I+VAD NHR+Q+F DG F+ KFG G K GQ +P +AV+ +++V
Sbjct: 613 AGVACDSQRRIIVADKDNHRIQIFTFDGQFLLKFGEKGTKNGQFNYPWDVAVNFEGKILV 672
Query: 161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
SD+ NHRVQ+F DGTF+ K+G G + P +A + ++V+D NNH
Sbjct: 673 SDTRNHRVQLFG-------PDGTFLNKYGFEGALWKHFDSPRGVAFNQEGHLVVTDFNNH 725
Query: 221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
R+ + + + GSEG+ GQ P+GVAVD + I V DS N+RIQ+F P+G FL
Sbjct: 726 RLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQEDRIIVADSRNHRIQVFEPNGNFLC 785
Query: 281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FG G+G G+ G+AV +G I+ D N+RI +F
Sbjct: 786 KFGTHGNGFGQMDRPSGIAVTPDGVIVAVDFGNNRILMF 824
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 125/236 (52%), Gaps = 16/236 (6%)
Query: 44 KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA------- 96
K G+ GS PG F P G+A I+VAD NHR+Q+ FD + F
Sbjct: 598 KFGTLGSRPGQFDRPAGVACDSQRRIIVADKDNHRIQIFT--FDGQFLLKFGEKGTKNGQ 655
Query: 97 FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 156
F +P +AV + I+V+D+ NHRVQ+F DGTF+ K+G G + P +A +
Sbjct: 656 FNYPWDVAVNFEGKILVSDTRNHRVQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFNQEG 715
Query: 157 RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 216
++V+D NNHR+ V + D GS G GQ P +AV +R+IV+D
Sbjct: 716 HLVVTDFNNHRL-------LVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQEDRIIVAD 768
Query: 217 SNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF 272
S NHR+Q+F+ NG + FG+ G+ GQ+ P G+AV G I D GNNRI +F
Sbjct: 769 SRNHRIQVFEPNGNFLCKFGTHGNGFGQMDRPSGIAVTPDGVIVAVDFGNNRILMF 824
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 113/192 (58%), Gaps = 7/192 (3%)
Query: 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGK 187
G + FG G+ GQL P I V V+V+D +N+RVQIF + GTF K
Sbjct: 546 GLPMASFGGEGDGDGQLCRPWGICVDKEGYVVVADRSNNRVQIF-------KPCGTFHHK 598
Query: 188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKF 247
FG++G++ GQ + P +A + R+IV+D +NHR+QIF +G+ + FG +G++ GQ +
Sbjct: 599 FGTLGSRPGQFDRPAGVACDSQRRIIVADKDNHRIQIFTFDGQFLLKFGEKGTKNGQFNY 658
Query: 248 PRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL 307
P VAV+ +G I V D+ N+R+Q+F PDG FL +G G+ F GVA G+++
Sbjct: 659 PWDVAVNFEGKILVSDTRNHRVQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFNQEGHLV 718
Query: 308 VCDRENHRIQVF 319
V D NHR+ V
Sbjct: 719 VTDFNNHRLLVI 730
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 110/217 (50%), Gaps = 16/217 (7%)
Query: 103 IAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
+ + PD ++ A+ S+H+ DGT+ + G E H ++V N+ I
Sbjct: 483 VLMSPDGNLSSAEVSDHQ------DGTYTVSYLPKG------EGEHLLSVLICNQHI--- 527
Query: 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 222
++ +GR + G + FG G+ GQL P I V V+V+D +N+RV
Sbjct: 528 -EGSPFKVMVKSGRSYGGVGLPMASFGGEGDGDGQLCRPWGICVDKEGYVVVADRSNNRV 586
Query: 223 QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
QIF G FG+ GS GQ P GVA D Q I V D N+RIQIFT DGQFL F
Sbjct: 587 QIFKPCGTFHHKFGTLGSRPGQFDRPAGVACDSQRRIIVADKDNHRIQIFTFDGQFLLKF 646
Query: 283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G G+ +G+F VAV G ILV D NHR+Q+F
Sbjct: 647 GEKGTKNGQFNYPWDVAVNFEGKILVSDTRNHRVQLF 683
>sp|Q9U489|LIN41_CAEEL Protein lin-41 OS=Caenorhabditis elegans GN=lin-41 PE=2 SV=1
Length = 1147
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 128/222 (57%), Gaps = 9/222 (4%)
Query: 100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159
P GI V ++VAD SN+RVQ+F DG F+ KFG+ GN+ GQ + P I ++ N ++
Sbjct: 848 PWGICVDQRGRVIVADRSNNRVQIFDKDGNFISKFGTSGNRPGQFDRPAGITTNSLNNIV 907
Query: 160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 219
V+D +NHRVQ+FD N G F+ KFG G G +P +A ++ N + VSD+ N
Sbjct: 908 VADKDNHRVQVFDEN-------GMFLLKFGDRGRAVGYFNYPWGVATNSHNAIAVSDTRN 960
Query: 220 HRVQIFDVNGRVITSFGSEGSE-EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQ 277
HRVQIF G+ + G + + L PRG+ G + + D N+R+ + +P +
Sbjct: 961 HRVQIFTPQGQFVRKCGFDSAYFFKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMS 1020
Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
++ +G G GDG F +GV + G+ILVCD N+R+QVF
Sbjct: 1021 EMKVYGSEGDGDGMFVRPQGVVIDPEGHILVCDSRNNRVQVF 1062
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 129/258 (50%), Gaps = 26/258 (10%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA------ 96
G GS G P GI V ++VAD SN+RVQ+ FD N F++
Sbjct: 833 LTFGKEGSGDGELCRPWGICVDQRGRVIVADRSNNRVQI----FDKDGN--FISKFGTSG 886
Query: 97 -----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151
F P GI N+IVVAD NHRVQVF +G F+ KFG G G +P +A
Sbjct: 887 NRPGQFDRPAGITTNSLNNIVVADKDNHRVQVFDENGMFLLKFGDRGRAVGYFNYPWGVA 946
Query: 152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211
++ N + VSD+ NHRVQIF G+ + G F L+ P + +
Sbjct: 947 TNSHNAIAVSDTRNHRVQIFTPQGQFVRKCGFDSAYFFK------NLDSPRGLCYLPDGQ 1000
Query: 212 VIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
++++D NNHR+ + N + +GSEG +G P+GV +D +G+I V DS NNR+Q
Sbjct: 1001 LLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVIDPEGHILVCDSRNNRVQ 1060
Query: 271 IFTPDGQFLRAFGCWGSG 288
+F D +R G +G G
Sbjct: 1061 VFASDD--MRFIGSFGLG 1076
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 74/132 (56%)
Query: 188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKF 247
FG G+ G+L P I V RVIV+D +N+RVQIFD +G I+ FG+ G+ GQ
Sbjct: 835 FGKEGSGDGELCRPWGICVDQRGRVIVADRSNNRVQIFDKDGNFISKFGTSGNRPGQFDR 894
Query: 248 PRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL 307
P G+ + I V D N+R+Q+F +G FL FG G G F GVA S+ I
Sbjct: 895 PAGITTNSLNNIVVADKDNHRVQVFDENGMFLLKFGDRGRAVGYFNYPWGVATNSHNAIA 954
Query: 308 VCDRENHRIQVF 319
V D NHR+Q+F
Sbjct: 955 VSDTRNHRVQIF 966
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 56/88 (63%)
Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
I +FG EGS +G+L P G+ VD +G + V D NNR+QIF DG F+ FG G+ G+
Sbjct: 832 ILTFGKEGSGDGELCRPWGICVDQRGRVIVADRSNNRVQIFDKDGNFISKFGTSGNRPGQ 891
Query: 292 FKGLEGVAVMSNGNILVCDRENHRIQVF 319
F G+ S NI+V D++NHR+QVF
Sbjct: 892 FDRPAGITTNSLNNIVVADKDNHRVQVF 919
>sp|A4IF63|TRIM2_BOVIN Tripartite motif-containing protein 2 OS=Bos taurus GN=TRIM2 PE=2
SV=1
Length = 744
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 155/302 (51%), Gaps = 28/302 (9%)
Query: 31 PRSQYLQKRR--------LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVC 82
P S Y +R L F++G++G G FT +G+A + I++ADS+N VQ+
Sbjct: 454 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAASTNGKILIADSNNQCVQIF 513
Query: 83 FPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSM 137
K+ P G+AV P I++AD N V +F SDG F K GS
Sbjct: 514 SNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGS- 572
Query: 138 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197
G+L P ++V +IV D N +F +FQ +G V +FGS GN Q
Sbjct: 573 ----GKLMGPKGVSVDRNGHIIVVD--NKACCVF-----IFQPNGKIVTRFGSRGNGDRQ 621
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG 257
PH+ AV++ N +IV+D +NH V++F+ G + FGS G GQ P GVAVD G
Sbjct: 622 FAGPHFAAVNSNNEIIVTDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNG 681
Query: 258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
I V D GN+RIQ+F G FL S D + G +G+A+ S+G+++V D NH +
Sbjct: 682 NIIVADWGNSRIQVFDGSGSFLSYINT--SADPLY-GPQGLALTSDGHVVVADSGNHCFK 738
Query: 318 VF 319
V+
Sbjct: 739 VY 740
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 14/97 (14%)
Query: 37 QKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA 96
Q+ K GS G G F P G+AV + +I+VAD N R+QV FD + FL+
Sbjct: 651 QEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV----FDGSGS--FLS 704
Query: 97 FT--------WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
+ P+G+A+ D +VVADS NH +V++
Sbjct: 705 YINTSADPLYGPQGLALTSDGHVVVADSGNHCFKVYR 741
>sp|Q9C040|TRIM2_HUMAN Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1
SV=1
Length = 744
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 155/302 (51%), Gaps = 28/302 (9%)
Query: 31 PRSQYLQKRR--------LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVC 82
P S Y +R L F++G++G G FT +G+A + I++ADS+N VQ+
Sbjct: 454 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAASTNGKILIADSNNQCVQIF 513
Query: 83 FPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSM 137
K+ P G+AV P I++AD N V +F SDG F K GS
Sbjct: 514 SNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGS- 572
Query: 138 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197
G+L P ++V +IV D N +F +FQ +G V +FGS GN Q
Sbjct: 573 ----GKLMGPKGVSVDRNGHIIVVD--NKACCVF-----IFQPNGKIVTRFGSRGNGDRQ 621
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG 257
PH+ AV++ N +I++D +NH V++F+ G + FGS G GQ P GVAVD G
Sbjct: 622 FAGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNG 681
Query: 258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
I V D GN+RIQ+F G FL S D + G +G+A+ S+G+++V D NH +
Sbjct: 682 NIIVADWGNSRIQVFDGSGSFLSYINT--SADPLY-GPQGLALTSDGHVVVADSGNHCFK 738
Query: 318 VF 319
V+
Sbjct: 739 VY 740
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 14/97 (14%)
Query: 37 QKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA 96
Q+ K GS G G F P G+AV + +I+VAD N R+QV FD + FL+
Sbjct: 651 QEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV----FDGSGS--FLS 704
Query: 97 FT--------WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
+ P+G+A+ D +VVADS NH +V++
Sbjct: 705 YINTSADPLYGPQGLALTSDGHVVVADSGNHCFKVYR 741
>sp|D2GXS7|TRIM2_AILME Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 154/302 (50%), Gaps = 28/302 (9%)
Query: 31 PRSQYLQKRR--------LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVC 82
P S Y +R L F++G++G G FT +G+A I++ADS+N VQ+
Sbjct: 454 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAASTSGKILIADSNNQCVQIF 513
Query: 83 FPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSM 137
K+ P G+AV P I++AD N V +F SDG F K GS
Sbjct: 514 SNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGS- 572
Query: 138 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197
G+L P ++V +IV D N +F +FQ +G V +FGS GN Q
Sbjct: 573 ----GKLMGPKGVSVDRNGHIIVVD--NKACCVF-----IFQPNGKIVTRFGSRGNGDRQ 621
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG 257
PH+ AV++ N +IV+D +NH V++F+ G + FGS G GQ P GVAVD G
Sbjct: 622 FAGPHFAAVNSNNEIIVTDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNG 681
Query: 258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
I V D GN+RIQ+F G FL S D + G +G+A+ S+G+++V D NH +
Sbjct: 682 NIIVADWGNSRIQVFDGSGSFLSYINT--SADPLY-GPQGLALTSDGHVVVADSGNHCFK 738
Query: 318 VF 319
V+
Sbjct: 739 VY 740
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 14/97 (14%)
Query: 37 QKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA 96
Q+ K GS G G F P G+AV + +I+VAD N R+QV FD + FL+
Sbjct: 651 QEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV----FDGSGS--FLS 704
Query: 97 FT--------WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
+ P+G+A+ D +VVADS NH +V++
Sbjct: 705 YINTSADPLYGPQGLALTSDGHVVVADSGNHCFKVYR 741
>sp|F7H9X2|TRIM2_CALJA Tripartite motif-containing protein 2 OS=Callithrix jacchus
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 154/302 (50%), Gaps = 28/302 (9%)
Query: 31 PRSQYLQKRR--------LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVC 82
P S Y +R L F++G++G G FT +G+A I++ADS+N VQ+
Sbjct: 454 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAASTSGKILIADSNNQCVQIF 513
Query: 83 FPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSM 137
K+ P G+AV P I++AD N V +F SDG F K GS
Sbjct: 514 SNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGS- 572
Query: 138 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197
G+L P ++V +IV D N +F +FQ +G V +FGS GN Q
Sbjct: 573 ----GKLMGPKGVSVDRNGHIIVVD--NKACCVF-----IFQPNGKIVTRFGSRGNGDRQ 621
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG 257
PH+ AV++ N +I++D +NH V++F+ G + FGS G GQ P GVAVD G
Sbjct: 622 FAGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNG 681
Query: 258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
I V D GN+RIQ+F G FL S D + G +G+A+ S+G+++V D NH +
Sbjct: 682 NIIVADWGNSRIQVFDGSGSFLSYINT--SADPLY-GPQGLALTSDGHVVVADSGNHCFK 738
Query: 318 VF 319
V+
Sbjct: 739 VY 740
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 14/97 (14%)
Query: 37 QKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA 96
Q+ K GS G G F P G+AV + +I+VAD N R+QV FD + FL+
Sbjct: 651 QEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV----FDGSGS--FLS 704
Query: 97 FT--------WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
+ P+G+A+ D +VVADS NH +V++
Sbjct: 705 YINTSADPLYGPQGLALTSDGHVVVADSGNHCFKVYR 741
>sp|D3ZQG6|TRIM2_RAT Tripartite motif-containing protein 2 OS=Rattus norvegicus GN=Trim2
PE=1 SV=2
Length = 744
Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 155/302 (51%), Gaps = 28/302 (9%)
Query: 31 PRSQYLQKRR--------LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVC 82
P S Y +R L F++G++G G FT +G+A I++ADS+N VQ+
Sbjct: 454 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAASTSGKILIADSNNQCVQIF 513
Query: 83 FPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSM 137
K+ P G+AV P I++AD N V +F +DG F K GS
Sbjct: 514 SNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSNDGKFKTKIGS- 572
Query: 138 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197
G+L P ++V +IV D N +F +FQ +G V +FGS GN Q
Sbjct: 573 ----GKLMGPKGVSVDRNGHIIVVD--NKACCVF-----IFQPNGKIVTRFGSRGNGDRQ 621
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG 257
PH+ AV+++N +I++D +NH V++F+ G + FGS G GQ P GVAVD G
Sbjct: 622 FAGPHFAAVNSSNEIIITDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNG 681
Query: 258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
I V D GN+RIQ+F G FL S D + G +G+A+ S+G+++V D NH +
Sbjct: 682 NIIVADWGNSRIQVFDGSGSFLSYINT--SADPLY-GPQGLALTSDGHVVVADSGNHCFK 738
Query: 318 VF 319
V+
Sbjct: 739 VY 740
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 14/97 (14%)
Query: 37 QKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA 96
Q+ K GS G G F P G+AV + +I+VAD N R+QV FD + FL+
Sbjct: 651 QEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV----FDGSGS--FLS 704
Query: 97 FT--------WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
+ P+G+A+ D +VVADS NH +V++
Sbjct: 705 YINTSADPLYGPQGLALTSDGHVVVADSGNHCFKVYR 741
>sp|Q9ESN6|TRIM2_MOUSE Tripartite motif-containing protein 2 OS=Mus musculus GN=Trim2 PE=1
SV=1
Length = 744
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 154/302 (50%), Gaps = 28/302 (9%)
Query: 31 PRSQYLQKRR--------LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVC 82
P S Y +R L F++G++G G FT +G+A I++ADS+N VQ+
Sbjct: 454 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAASTSGKILIADSNNQCVQIF 513
Query: 83 FPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSM 137
K+ P G+AV P I++AD N V +F +DG F K GS
Sbjct: 514 SNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSNDGKFKTKIGS- 572
Query: 138 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197
G+L P ++V +IV D N +F +FQ +G V +FGS GN Q
Sbjct: 573 ----GKLMGPKGVSVDRNGHIIVVD--NKACCVF-----IFQPNGKIVTRFGSRGNGDRQ 621
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG 257
PH+ AV++ N +I++D +NH V++F+ G + FGS G GQ P GVAVD G
Sbjct: 622 FAGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNG 681
Query: 258 YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
I V D GN+RIQ+F G FL S D + G +G+A+ S+G+++V D NH +
Sbjct: 682 NIIVADWGNSRIQVFDGSGSFLSYINT--SADPLY-GPQGLALTSDGHVVVADSGNHCFK 738
Query: 318 VF 319
V+
Sbjct: 739 VY 740
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 14/97 (14%)
Query: 37 QKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA 96
Q+ K GS G G F P G+AV + +I+VAD N R+QV FD + FL+
Sbjct: 651 QEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV----FDGSGS--FLS 704
Query: 97 FT--------WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
+ P+G+A+ D +VVADS NH +V++
Sbjct: 705 YINTSADPLYGPQGLALTSDGHVVVADSGNHCFKVYR 741
>sp|Q9R1R2|TRIM3_MOUSE Tripartite motif-containing protein 3 OS=Mus musculus GN=Trim3 PE=1
SV=1
Length = 744
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 144/288 (50%), Gaps = 28/288 (9%)
Query: 41 LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----- 95
L F++GSRG E G FT +G++ IVVADS+N +QV F + F
Sbjct: 472 LVFRVGSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQV----FSNEGQFKFRFGVRG 527
Query: 96 ----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151
P G+AV + I+VAD N V +F +G F K G AG+L P +A
Sbjct: 528 RSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIG-----AGRLMGPKGVA 582
Query: 152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211
V +IV D N +F FQ +G VG+FG G PH++AV+N N
Sbjct: 583 VDRNGHIIVVD--NKSCCVF-----TFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNE 635
Query: 212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI 271
++V+D +NH V+++ +G + FGS G GQ P GVAVD G I V D GN+RIQ+
Sbjct: 636 IVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV 695
Query: 272 FTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
F G FL G +G+A+ S+G+++V D NH + +
Sbjct: 696 FDSSGSFLSYINTSAE---PLYGPQGLALTSDGHVVVADAGNHCFKAY 740
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 10/233 (4%)
Query: 40 RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW 99
+ +F+ G RG PG P G+AV + I+VAD N V + P KT
Sbjct: 518 QFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMG 577
Query: 100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159
P+G+AV + I+V D+ + V FQ +G VG+FG G PH++AV+N N ++
Sbjct: 578 PKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNEIV 637
Query: 160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 219
V+D +NH V +V+ +DG F+ KFGS G GQ P +AV + +IV+D N
Sbjct: 638 VTDFHNHSV-------KVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGN 690
Query: 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF 272
R+Q+FD +G ++ + L P+G+A+ G++ V D+GN+ + +
Sbjct: 691 SRIQVFDSSGSFLSYINTSAEP---LYGPQGLALTSDGHVVVADAGNHCFKAY 740
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%)
Query: 227 VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWG 286
+ ++ GS G E+G+ +GV+ G I V DS N IQ+F+ +GQF FG G
Sbjct: 468 IEDELVFRVGSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRG 527
Query: 287 SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G+ + GVAV +NG+I+V D +N + +F
Sbjct: 528 RSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIF 560
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---- 98
FK GS G G F P G+AV + +I+VAD N R+QV FD ++ FL++
Sbjct: 657 FKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV----FD--SSGSFLSYINTSA 710
Query: 99 ----WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
P+G+A+ D +VVAD+ NH + ++
Sbjct: 711 EPLYGPQGLALTSDGHVVVADAGNHCFKAYR 741
>sp|O75382|TRIM3_HUMAN Tripartite motif-containing protein 3 OS=Homo sapiens GN=TRIM3 PE=1
SV=2
Length = 744
Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 144/288 (50%), Gaps = 28/288 (9%)
Query: 41 LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----- 95
L F++GSRG E G FT +G++ IVVADS+N +QV F + F
Sbjct: 472 LVFRVGSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQV----FSNEGQFKFRFGVRG 527
Query: 96 ----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151
P G+AV + I+VAD N V +F +G F K G AG+L P +A
Sbjct: 528 RSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIG-----AGRLMGPKGVA 582
Query: 152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211
V +IV D N +F FQ +G VG+FG G PH++AV+N N
Sbjct: 583 VDRNGHIIVVD--NKSCCVF-----TFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNE 635
Query: 212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI 271
++V+D +NH V+++ +G + FGS G GQ P GVAVD G I V D GN+RIQ+
Sbjct: 636 IVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV 695
Query: 272 FTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
F G FL G +G+A+ S+G+++V D NH + +
Sbjct: 696 FDSSGSFLSYINTSAE---PLYGPQGLALTSDGHVVVADAGNHCFKAY 740
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 10/233 (4%)
Query: 40 RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW 99
+ +F+ G RG PG P G+AV + I+VAD N V + P KT
Sbjct: 518 QFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMG 577
Query: 100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159
P+G+AV + I+V D+ + V FQ +G VG+FG G PH++AV+N N ++
Sbjct: 578 PKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNEIV 637
Query: 160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 219
V+D +NH V +V+ +DG F+ KFGS G GQ P +AV + +IV+D N
Sbjct: 638 VTDFHNHSV-------KVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGN 690
Query: 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF 272
R+Q+FD +G ++ + L P+G+A+ G++ V D+GN+ + +
Sbjct: 691 SRIQVFDSSGSFLSYINTSAEP---LYGPQGLALTSDGHVVVADAGNHCFKAY 740
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%)
Query: 227 VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWG 286
+ ++ GS G E+G+ +GV+ G I V DS N IQ+F+ +GQF FG G
Sbjct: 468 IEDELVFRVGSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRG 527
Query: 287 SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G+ + GVAV +NG+I+V D +N + +F
Sbjct: 528 RSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIF 560
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---- 98
FK GS G G F P G+AV + +I+VAD N R+QV FD ++ FL++
Sbjct: 657 FKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV----FD--SSGSFLSYINTSA 710
Query: 99 ----WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
P+G+A+ D +VVAD+ NH + ++
Sbjct: 711 EPLYGPQGLALTSDGHVVVADAGNHCFKAYR 741
>sp|O70277|TRIM3_RAT Tripartite motif-containing protein 3 OS=Rattus norvegicus GN=Trim3
PE=1 SV=1
Length = 744
Score = 151 bits (381), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 142/288 (49%), Gaps = 28/288 (9%)
Query: 41 LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----- 95
L F++GSRG E G FT ++ IVVADS+N +QV F + F
Sbjct: 472 LVFRVGSRGREKGEFTNLHPLSAASSGRIVVADSNNQCIQV----FSNEGQFKFRFGVRG 527
Query: 96 ----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151
P G+AV + I+VAD N V +F +G F K G AG+L P +A
Sbjct: 528 RSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIG-----AGRLMGPKGVA 582
Query: 152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211
V +IV D N +F FQ +G VG+FG G PH++AV+N N
Sbjct: 583 VDRNGHIIVVD--NKSCCVF-----TFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNE 635
Query: 212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI 271
++V+D +NH V+++ +G + FGS G GQ P GVAVD G I V D GN+RIQ+
Sbjct: 636 IVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV 695
Query: 272 FTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
F G FL G +G+A+ S+G+++V D NH + +
Sbjct: 696 FDSSGSFLSYINTSAE---PLYGPQGLALTSDGHVVVADAGNHCFKAY 740
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 10/233 (4%)
Query: 40 RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW 99
+ +F+ G RG PG P G+AV + I+VAD N V + P KT
Sbjct: 518 QFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMG 577
Query: 100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159
P+G+AV + I+V D+ + V FQ +G VG+FG G PH++AV+N N ++
Sbjct: 578 PKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNEIV 637
Query: 160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 219
V+D +NH V +V+ +DG F+ KFGS G GQ P +AV + +IV+D N
Sbjct: 638 VTDFHNHSV-------KVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGN 690
Query: 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF 272
R+Q+FD +G ++ + L P+G+A+ G++ V D+GN+ + +
Sbjct: 691 SRIQVFDSSGSFLSYINTSAEP---LYGPQGLALTSDGHVVVADAGNHCFKAY 740
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---- 98
FK GS G G F P G+AV + +I+VAD N R+QV FD ++ FL++
Sbjct: 657 FKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQV----FD--SSGSFLSYINTSA 710
Query: 99 ----WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
P+G+A+ D +VVAD+ NH + ++
Sbjct: 711 EPLYGPQGLALTSDGHVVVADAGNHCFKAYR 741
>sp|Q9V4M2|WECH_DROME Protein wech OS=Drosophila melanogaster GN=wech PE=1 SV=2
Length = 832
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 120/223 (53%), Gaps = 11/223 (4%)
Query: 100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159
P G+ V ++V+D N+RVQVF DG+ KFG G G+ + P I V NR+I
Sbjct: 553 PWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLKFKFGRKGVGNGEFDLPAGICVDVDNRII 612
Query: 160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 219
V D +NHRVQIF + G F+ KFGS G + GQ ++P +AV++ +++V+DS N
Sbjct: 613 VVDKDNHRVQIF-------TASGVFLLKFGSYGKEYGQFQYPWDVAVNSRRQIVVTDSRN 665
Query: 220 HRVQIFDVNGRVITS--FGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-G 276
HR+Q FD GR I F + G +G + PRGV G I V D N+ + + PD
Sbjct: 666 HRIQQFDSEGRFIRQIVFDNHGQTKG-IASPRGVCYTPTGNIIVSDFDNHCLYLIDPDIN 724
Query: 277 QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
L G GSG EF G+ G I+V D +N RI VF
Sbjct: 725 DILSVKGHEGSGFHEFNRPSGLCCDDEGRIIVADSKNQRILVF 767
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 130/247 (52%), Gaps = 16/247 (6%)
Query: 41 LQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----- 95
L + G E G + P G+ V ++V+D N+RVQV P LK
Sbjct: 536 LSLSFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLKFKFGRKGVGNG 595
Query: 96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 155
F P GI V DN I+V D NHRVQ+F + G F+ KFGS G + GQ ++P +AV++
Sbjct: 596 EFDLPAGICVDVDNRIIVVDKDNHRVQIFTASGVFLLKFGSYGKEYGQFQYPWDVAVNSR 655
Query: 156 NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGK--FGSMGNKAGQLEHPHYIAVSNTNRVI 213
+++V+DS NHR+Q FD S+G F+ + F + G G + P + + T +I
Sbjct: 656 RQIVVTDSRNHRIQQFD-------SEGRFIRQIVFDNHGQTKG-IASPRGVCYTPTGNII 707
Query: 214 VSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF 272
VSD +NH + + D + +++ G EGS + P G+ DD+G I V DS N RI +F
Sbjct: 708 VSDFDNHCLYLIDPDINDILSVKGHEGSGFHEFNRPSGLCCDDEGRIIVADSKNQRILVF 767
Query: 273 TPDGQFL 279
+ F+
Sbjct: 768 NQNLDFM 774
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 100/184 (54%), Gaps = 12/184 (6%)
Query: 134 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN 193
F + G++ GQ+ P + V V+VSD N+RVQ VF DG+ KFG G
Sbjct: 540 FATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQ-------VFNPDGSLKFKFGRKGV 592
Query: 194 KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAV 253
G+ + P I V NR+IV D +NHRVQIF +G + FGS G E GQ ++P VAV
Sbjct: 593 GNGEFDLPAGICVDVDNRIIVVDKDNHRVQIFTASGVFLLKFGSYGKEYGQFQYPWDVAV 652
Query: 254 DDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGL---EGVAVMSNGNILVCD 310
+ + I V DS N+RIQ F +G+F+R G+ KG+ GV GNI+V D
Sbjct: 653 NSRRQIVVTDSRNHRIQQFDSEGRFIRQI--VFDNHGQTKGIASPRGVCYTPTGNIIVSD 710
Query: 311 RENH 314
+NH
Sbjct: 711 FDNH 714
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 74/132 (56%)
Query: 188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKF 247
F + G++ GQ+ P + V V+VSD N+RVQ+F+ +G + FG +G G+
Sbjct: 540 FATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLKFKFGRKGVGNGEFDL 599
Query: 248 PRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL 307
P G+ VD I V D N+R+QIFT G FL FG +G G+F+ VAV S I+
Sbjct: 600 PAGICVDVDNRIIVVDKDNHRVQIFTASGVFLLKFGSYGKEYGQFQYPWDVAVNSRRQIV 659
Query: 308 VCDRENHRIQVF 319
V D NHRIQ F
Sbjct: 660 VTDSRNHRIQQF 671
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%)
Query: 234 SFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFK 293
SF +EG E+GQ+ P G+ VD G++ V D NNR+Q+F PDG FG G G+GEF
Sbjct: 539 SFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLKFKFGRKGVGNGEFD 598
Query: 294 GLEGVAVMSNGNILVCDRENHRIQVF 319
G+ V + I+V D++NHR+Q+F
Sbjct: 599 LPAGICVDVDNRIIVVDKDNHRVQIF 624
>sp|Q8MQJ9|BRAT_DROME Brain tumor protein OS=Drosophila melanogaster GN=brat PE=1 SV=2
Length = 1037
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 125/220 (56%), Gaps = 22/220 (10%)
Query: 97 FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA-VSNT 155
FT P G+AV N I+VAD++NHR+Q+F +G F +FG G + QL +P+ +A V N+
Sbjct: 780 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNS 839
Query: 156 NRVIVSD-SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 214
+IV++ S H++QI++ G+ FV KFG A L+HP + V N R+IV
Sbjct: 840 GDIIVTERSPTHQIQIYNQYGQ-------FVRKFG-----ATILQHPRGVTVDNKGRIIV 887
Query: 215 SDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274
+ RV IFD NG V+ FG L+FP GV V+D+ I + D+ + +++F
Sbjct: 888 VECKVMRVIIFDQNGNVLHKFGC----SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY 943
Query: 275 DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314
+GQ+LR G G+G GV + SNG IL+ D N+
Sbjct: 944 EGQYLRQIG----GEGITNYPIGVGINSNGEILIADNHNN 979
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 149/304 (49%), Gaps = 46/304 (15%)
Query: 31 PRSQYL-QKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK 89
P+SQ QK K G G G FT P G+AV N I+VAD++NHR+Q+ FD +
Sbjct: 755 PKSQIKRQKMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQI----FDKE 810
Query: 90 TNCVFL---------AFTWPRGIAV--GPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMG 138
F +P +AV + IV S H++Q++ G FV KFG
Sbjct: 811 GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFG--- 867
Query: 139 NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198
A L+HP + V N R+IV + RV IFD NG V KFG + L
Sbjct: 868 --ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-------KFGC----SKHL 914
Query: 199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY 258
E P+ + V++ + +SD+ H V++F+ G+ + G EG +P GV ++ G
Sbjct: 915 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGIT----NYPIGVGINSNGE 970
Query: 259 ISVGDSGNN-RIQIFTPDGQFLRAFGCWGSGDGEFKGLE--GVAVMSNGNILVCDRENHR 315
I + D+ NN + IFT DGQ + A + + K + VA+M +G++++ ++ +R
Sbjct: 971 ILIADNHNNFNLTIFTQDGQLISAL------ESKVKHAQCFDVALMDDGSVVLASKD-YR 1023
Query: 316 IQVF 319
+ ++
Sbjct: 1024 LYIY 1027
>sp|P34611|NCL1_CAEEL B-box type zinc finger protein ncl-1 OS=Caenorhabditis elegans
GN=ncl-1 PE=1 SV=1
Length = 851
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 22/220 (10%)
Query: 97 FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT- 155
FT P G+AV IVVAD++NHR+QVF +G F +FG G + GQL +P+ +AV+ T
Sbjct: 586 FTEPSGVAVNGQGDIVVADTNNHRIQVFDKEGRFKFQFGECGKRDGQLLYPNRVAVNRTT 645
Query: 156 -NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 214
+ V+ S H++Q+++ G+ F+ KFG A L+HP + V + R+IV
Sbjct: 646 GDFVVTERSPTHQIQVYNQYGQ-------FLRKFG-----ANILQHPRGVCVDSKGRIIV 693
Query: 215 SDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274
+ RV IFD+ G ++ F S L+FP GV +D+ I + D+ + I++F+
Sbjct: 694 VECKVMRVIIFDMFGNILQKF----SCSRYLEFPNGVCTNDKNEILISDNRAHCIKVFSY 749
Query: 275 DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314
+GQ+LR G G+G GV + S G ++V D N+
Sbjct: 750 EGQYLRQIG----GEGVTNYPIGVGINSLGEVVVADNHNN 785
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 139/295 (47%), Gaps = 41/295 (13%)
Query: 37 QKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL- 95
QK K G G G FT P G+AV IVVAD++NHR+QV FD + F
Sbjct: 568 QKMIYHCKFGEFGVMEGQFTEPSGVAVNGQGDIVVADTNNHRIQV----FDKEGRFKFQF 623
Query: 96 --------AFTWPRGIAVGPDNS--IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLE 145
+P +AV +V S H++QV+ G F+ KFG A L+
Sbjct: 624 GECGKRDGQLLYPNRVAVNRTTGDFVVTERSPTHQIQVYNQYGQFLRKFG-----ANILQ 678
Query: 146 HPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 205
HP + V + R+IV + RV IFD+ G + Q KF + LE P+ +
Sbjct: 679 HPRGVCVDSKGRIIVVECKVMRVIIFDMFGNILQ-------KFSC----SRYLEFPNGVC 727
Query: 206 VSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG 265
++ N +++SD+ H +++F G+ + G EG +P GV ++ G + V D+
Sbjct: 728 TNDKNEILISDNRAHCIKVFSYEGQYLRQIGGEGVT----NYPIGVGINSLGEVVVADNH 783
Query: 266 NN-RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
NN + +F+ DG + A F VA++ +G++++ ++ +R+ ++
Sbjct: 784 NNFNLTVFSQDGTMIGALESRVKHAQCFD----VALVDDGSVVLASKD-YRLYLY 833
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 103/202 (50%), Gaps = 18/202 (8%)
Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ 179
R Q+ + + KFG G GQ P +AV+ ++V+D+NNHR+Q+FD GR
Sbjct: 562 RSQIKRQKMIYHCKFGEFGVMEGQFTEPSGVAVNGQGDIVVADTNNHRIQVFDKEGR--- 618
Query: 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVITSFGS 237
F +FG G + GQL +P+ +AV+ T + V+ S H++Q+++ G+ + FG+
Sbjct: 619 ----FKFQFGECGKRDGQLLYPNRVAVNRTTGDFVVTERSPTHQIQVYNQYGQFLRKFGA 674
Query: 238 EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEG 297
L+ PRGV VD +G I V + R+ IF G L+ F C S EF G
Sbjct: 675 N-----ILQHPRGVCVDSKGRIIVVECKVMRVIIFDMFGNILQKFSC--SRYLEFP--NG 725
Query: 298 VAVMSNGNILVCDRENHRIQVF 319
V IL+ D H I+VF
Sbjct: 726 VCTNDKNEILISDNRAHCIKVF 747
>sp|Q6IMG5|NHLC1_RAT E3 ubiquitin-protein ligase NHLRC1 OS=Rattus norvegicus GN=Nhlrc1
PE=2 SV=1
Length = 396
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 35/196 (17%)
Query: 100 PRGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 158
P G+A+ P +VV RV++F S G +FG G+ A +++P +AV+N V
Sbjct: 126 PTGLALCPKTGRVVVVHDGKRRVKIFDSGGGGAHQFGEKGDAAHDVKYPLDVAVTNDCHV 185
Query: 159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN 218
+V+D+ + +++FD G++ VGK Q P + ++ N V+V+D+
Sbjct: 186 VVTDAGDCSLKVFDFFGQI----KLVVGK---------QFSLPWGVEITPHNGVLVTDAE 232
Query: 219 NHRVQIFDVN-----GRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGD--------S 264
+ + + + R I + L PRGVAV G I+V + S
Sbjct: 233 AGTLHLLEADFPEGVLRRIERL------QAHLCNPRGVAVSWLTGAIAVLEHPCALGTSS 286
Query: 265 GNN-RIQIFTPDGQFL 279
GNN R+++F Q +
Sbjct: 287 GNNTRVKVFNSSMQLI 302
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 34/246 (13%)
Query: 44 KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGI 103
+ G +G +P +AV D +VV D+ + ++V F F V F+ P G+
Sbjct: 160 QFGEKGDAAHDVKYPLDVAVTNDCHVVVTDAGDCSLKV-FDFFGQIKLVVGKQFSLPWGV 218
Query: 104 AVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV--- 160
+ P N ++V D+ + + ++D G + L +P +AVS I
Sbjct: 219 EITPHNGVLVTDAEAGTLHLLEADFP-EGVLRRIERLQAHLCNPRGVAVSWLTGAIAVLE 277
Query: 161 -------SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 213
S NN RV +VF S +G+ S G L P I S
Sbjct: 278 HPCALGTSSGNNTRV-------KVFNSSMQLIGQVDSFGL---NLLFPSKITASA----- 322
Query: 214 VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQ-------LKFPRGVAVDDQGYISVGDSGN 266
V+ + V + D +G I G L P + + + V DS +
Sbjct: 323 VTFDHQGNVIVADTSGPAIVCLGKPEEFPALKPMVTHGLSRPVALVFTKENSLLVLDSAS 382
Query: 267 NRIQIF 272
+ I++F
Sbjct: 383 HSIKVF 388
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 94/247 (38%), Gaps = 57/247 (23%)
Query: 99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 158
+P +AV D +VV D+ + ++VF F G+ + K Q P + ++ N V
Sbjct: 173 YPLDVAVTNDCHVVVTDAGDCSLKVFD----FFGQIKLVVGK--QFSLPWGVEITPHNGV 226
Query: 159 IVSDSNNHRVQIFDVN------GRVFQSDGTFVGKFGS----MGNKAGQLEHPHYIAVSN 208
+V+D+ + + + + R+ + G + LEHP + S+
Sbjct: 227 LVTDAEAGTLHLLEADFPEGVLRRIERLQAHLCNPRGVAVSWLTGAIAVLEHPCALGTSS 286
Query: 209 TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFP-----RGVAVDDQGYISVGD 263
NN RV++F+ + ++I S G L FP V D QG + V D
Sbjct: 287 --------GNNTRVKVFNSSMQLIGQVDSFGL---NLLFPSKITASAVTFDHQGNVIVAD 335
Query: 264 SGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE-----------GVAVMSNGNILVCDRE 312
+ I C G + EF L+ + ++LV D
Sbjct: 336 TSGPAIV-------------CLGKPE-EFPALKPMVTHGLSRPVALVFTKENSLLVLDSA 381
Query: 313 NHRIQVF 319
+H I+VF
Sbjct: 382 SHSIKVF 388
>sp|Q6VVB1|NHLC1_HUMAN E3 ubiquitin-protein ligase NHLRC1 OS=Homo sapiens GN=NHLRC1 PE=1
SV=2
Length = 395
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 100 PRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 158
P G+A+ P +VV RV++F S G +FG G+ A + +P + ++N V
Sbjct: 129 PTGLALCPKTGRVVVVHDGRRRVKIFDSGGGCAHQFGEKGDAAQDIRYPVDVTITNDCHV 188
Query: 159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN 218
+V+D+ + +++FD G++ G GQ P + + N ++V+D+
Sbjct: 189 VVTDAGDRSIKVFDFFGQIKLVIG-------------GQFSLPWGVETTPQNGIVVTDAE 235
Query: 219 NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSG--------NNRI 269
+ + DV+ +E + L PRGVAV G I+V + + R+
Sbjct: 236 AGSLHLLDVDFAEGVLRRTE-RLQAHLCNPRGVAVSWLTGAIAVLEHPLALGTGVCSTRV 294
Query: 270 QIFTPDGQFL 279
++F+ Q +
Sbjct: 295 KVFSSSMQLV 304
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 186 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQL 245
G +G++ N G P T RV+V RV+IFD G FG +G +
Sbjct: 121 GGWGTLVNPTGLALCP------KTGRVVVVHDGRRRVKIFDSGGGCAHQFGEKGDAAQDI 174
Query: 246 KFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN 305
++P V + + ++ V D+G+ I++F GQ G G+F GV
Sbjct: 175 RYPVDVTITNDCHVVVTDAGDRSIKVFDFFGQIKLVIG------GQFSLPWGVETTPQNG 228
Query: 306 ILVCDRENHRIQVF 319
I+V D E + +
Sbjct: 229 IVVTDAEAGSLHLL 242
Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 31/194 (15%)
Query: 53 GCFTWPRGIAVGPDNSIVVADS---SNHRVQVCFPHFDL-KTNCVFLAFTWPRGIAVG-P 107
G F+ P G+ P N IVV D+ S H + V F L +T + PRG+AV
Sbjct: 213 GQFSLPWGVETTPQNGIVVTDAEAGSLHLLDVDFAEGVLRRTERLQAHLCNPRGVAVSWL 272
Query: 108 DNSIVVADS--------SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN--- 156
+I V + + RV+VF S VG+ + G L P I S
Sbjct: 273 TGAIAVLEHPLALGTGVCSTRVKVFSSSMQLVGQVDTFGL---SLYFPSKITASAVTFDH 329
Query: 157 --RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 214
VIV+D++ + F V L HP + + N ++V
Sbjct: 330 QGNVIVADTSGPAILCLG-KPEEFPVPKPMVTH---------GLSHPVALTFTKENSLLV 379
Query: 215 SDSNNHRVQIFDVN 228
D+ +H ++++ V+
Sbjct: 380 LDTASHSIKVYKVD 393
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 101/283 (35%), Gaps = 42/283 (14%)
Query: 58 PRGIAVGPDN-SIVVADSSNHRVQV------CFPHFDLKTNCVFLAFTWPRGIAVGPDNS 110
P G+A+ P +VV RV++ C F K + +P + + D
Sbjct: 129 PTGLALCPKTGRVVVVHDGRRRVKIFDSGGGCAHQFGEKGDAA-QDIRYPVDVTITNDCH 187
Query: 111 IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI 170
+VV D+ + ++VF G G GQ P + + N ++V+D+ + +
Sbjct: 188 VVVTDAGDRSIKVFDFFGQIKLVIG------GQFSLPWGVETTPQNGIVVTDAEAGSLHL 241
Query: 171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV---------SDSNNHR 221
DV+ F G L +P +AVS I + + R
Sbjct: 242 LDVD---FAE-----GVLRRTERLQAHLCNPRGVAVSWLTGAIAVLEHPLALGTGVCSTR 293
Query: 222 VQIFDVNGRVITSFGSEGSEEGQLKFP-----RGVAVDDQGYISVGDSGNNRIQIFTPDG 276
V++F + +++ + G L FP V D QG + V D+ I
Sbjct: 294 VKVFSSSMQLVGQVDTFGL---SLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPE 350
Query: 277 QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
+F G L ++LV D +H I+V+
Sbjct: 351 EFPVPKPMVTHGLSHPVAL---TFTKENSLLVLDTASHSIKVY 390
>sp|P83388|AMDL_CAEEL Probable peptidyl-glycine alpha-amidating monooxygenase T19B4.1
OS=Caenorhabditis elegans GN=T19B4.1 PE=1 SV=2
Length = 663
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 15/148 (10%)
Query: 97 FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGN--KAGQLEHPHYIAVSN 154
F P GI V D + D +H V ++ +G + + G G +H HY +
Sbjct: 424 FYLPHGIYVDKDGFVYTTDVGSHTVAKWKIEGNELKNIWTSGELLMPGSDQH-HYCKPTG 482
Query: 155 TNRV----IVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209
RV V+D N RV + D+NG+ + +FG G AGQ PH I +
Sbjct: 483 ITRVEDQLYVTDGYCNSRVVVLDLNGKRIR-------QFGLPGEDAGQFNLPHDIVSDSA 535
Query: 210 NRVIVSDSNNHRVQIFDVNGRVITSFGS 237
R++V+D N RVQ G VI F S
Sbjct: 536 GRLLVTDRENGRVQHMTTQGHVIEEFKS 563
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 62/151 (41%), Gaps = 21/151 (13%)
Query: 142 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP 201
GQ PH I V V +D +H V + + G ++ T +G+L P
Sbjct: 422 GQFYLPHGIYVDKDGFVYTTDVGSHTVAKWKIEGNELKNIWT-----------SGELLMP 470
Query: 202 -----HYIAVSNTNRV----IVSDSN-NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGV 251
HY + RV V+D N RV + D+NG+ I FG G + GQ P +
Sbjct: 471 GSDQHHYCKPTGITRVEDQLYVTDGYCNSRVVVLDLNGKRIRQFGLPGEDAGQFNLPHDI 530
Query: 252 AVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
D G + V D N R+Q T G + F
Sbjct: 531 VSDSAGRLLVTDRENGRVQHMTTQGHVIEEF 561
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG------SEEGQLKFPR 249
GQ PH I V V +D +H V + + G + + + G S++ P
Sbjct: 422 GQFYLPHGIYVDKDGFVYTTDVGSHTVAKWKIEGNELKNIWTSGELLMPGSDQHHYCKPT 481
Query: 250 GVA-VDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILV 308
G+ V+DQ Y++ G N+R+ + +G+ +R FG G G+F + S G +LV
Sbjct: 482 GITRVEDQLYVTDGYC-NSRVVVLDLNGKRIRQFGLPGEDAGQFNLPHDIVSDSAGRLLV 540
Query: 309 CDRENHRIQ 317
DREN R+Q
Sbjct: 541 TDRENGRVQ 549
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 60/160 (37%), Gaps = 28/160 (17%)
Query: 38 KRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRV-----------------Q 80
+ +L+ K+G G F P GI V D + D +H V +
Sbjct: 412 QTKLERKLGG-----GQFYLPHGIYVDKDGFVYTTDVGSHTVAKWKIEGNELKNIWTSGE 466
Query: 81 VCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNK 140
+ P D C P GI D V N RV V +G + +FG G
Sbjct: 467 LLMPGSDQHHYCK------PTGITRVEDQLYVTDGYCNSRVVVLDLNGKRIRQFGLPGED 520
Query: 141 AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS 180
AGQ PH I + R++V+D N RVQ G V +
Sbjct: 521 AGQFNLPHDIVSDSAGRLLVTDRENGRVQHMTTQGHVIEE 560
>sp|Q8BR37|NHLC1_MOUSE E3 ubiquitin-protein ligase NHLRC1 OS=Mus musculus GN=Nhlrc1 PE=2
SV=1
Length = 401
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 35/196 (17%)
Query: 100 PRGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 158
P G+A+ P +VV RV++F S G +FG G+ A +++P +AV+N V
Sbjct: 131 PTGLALCPKTGRVVVVHDGKRRVKIFDSGGGGAHQFGEKGDAAHDVKYPLDVAVTNDCHV 190
Query: 159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN 218
+V+D+ + +++FD G++ VGK Q P + ++ N V+V+D+
Sbjct: 191 VVTDAGDCSLKVFDFFGQI----KLVVGK---------QFSLPWGVEITPHNGVLVTDAE 237
Query: 219 NHRVQIFDVN-----GRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISV-------GDSG 265
+ + + + R I + L PRG+AV G I+V G +G
Sbjct: 238 AGTLHLLEADFPEGVLRRIERL------QAHLCSPRGLAVSWLTGAIAVLEHPCAFGRTG 291
Query: 266 --NNRIQIFTPDGQFL 279
N R+++F Q +
Sbjct: 292 CNNTRVKVFNSTMQLI 307
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 142 GQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH 200
G L +P +A+ T RV+V RV+IFD S G +FG G+ A +++
Sbjct: 126 GTLVNPTGLALCPKTGRVVVVHDGKRRVKIFD-------SGGGGAHQFGEKGDAAHDVKY 178
Query: 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYIS 260
P +AV+N V+V+D+ + +++FD G++ G Q P GV + +
Sbjct: 179 PLDVAVTNDCHVVVTDAGDCSLKVFDFFGQIKLVVGK------QFSLPWGVEITPHNGVL 232
Query: 261 VGDSGNNRIQIFTPD 275
V D+ + + D
Sbjct: 233 VTDAEAGTLHLLEAD 247
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 196 GQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD 254
G L +P +A+ T RV+V RV+IFD G FG +G +K+P VAV
Sbjct: 126 GTLVNPTGLALCPKTGRVVVVHDGKRRVKIFDSGGGGAHQFGEKGDAAHDVKYPLDVAVT 185
Query: 255 DQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314
+ ++ V D+G+ +++F GQ G +F GV + + +LV D E
Sbjct: 186 NDCHVVVTDAGDCSLKVFDFFGQIKLVVG------KQFSLPWGVEITPHNGVLVTDAEAG 239
Query: 315 RIQVF 319
+ +
Sbjct: 240 TLHLL 244
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 92/246 (37%), Gaps = 34/246 (13%)
Query: 44 KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGI 103
+ G +G +P +AV D +VV D+ + ++V F F V F+ P G+
Sbjct: 165 QFGEKGDAAHDVKYPLDVAVTNDCHVVVTDAGDCSLKV-FDFFGQIKLVVGKQFSLPWGV 223
Query: 104 AVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV--- 160
+ P N ++V D+ + + ++D G + L P +AVS I
Sbjct: 224 EITPHNGVLVTDAEAGTLHLLEADFP-EGVLRRIERLQAHLCSPRGLAVSWLTGAIAVLE 282
Query: 161 -------SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 213
+ NN RV +VF S +G+ S G L P + S
Sbjct: 283 HPCAFGRTGCNNTRV-------KVFNSTMQLIGQVDSFGL---NLLFPSKVTASA----- 327
Query: 214 VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQ-------LKFPRGVAVDDQGYISVGDSGN 266
V+ + V + D +G I G L P +A + + V D+ +
Sbjct: 328 VTFDHQGNVIVADTSGPAIVCLGKPEEFPALKPIITHGLSRPVALAFTKENSLLVLDTAS 387
Query: 267 NRIQIF 272
+ I++F
Sbjct: 388 HSIKVF 393
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 93/247 (37%), Gaps = 57/247 (23%)
Query: 99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 158
+P +AV D +VV D+ + ++VF F G+ + K Q P + ++ N V
Sbjct: 178 YPLDVAVTNDCHVVVTDAGDCSLKVFD----FFGQIKLVVGK--QFSLPWGVEITPHNGV 231
Query: 159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV---- 214
+V+D+ + + + + F G + L P +AVS I
Sbjct: 232 LVTDAEAGTLHLLEAD---FPE-----GVLRRIERLQAHLCSPRGLAVSWLTGAIAVLEH 283
Query: 215 ------SDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFP-----RGVAVDDQGYISVGD 263
+ NN RV++F+ ++I S G L FP V D QG + V D
Sbjct: 284 PCAFGRTGCNNTRVKVFNSTMQLIGQVDSFGL---NLLFPSKVTASAVTFDHQGNVIVAD 340
Query: 264 SGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE-----------GVAVMSNGNILVCDRE 312
+ I C G + EF L+ +A ++LV D
Sbjct: 341 TSGPAIV-------------CLGKPE-EFPALKPIITHGLSRPVALAFTKENSLLVLDTA 386
Query: 313 NHRIQVF 319
+H I+VF
Sbjct: 387 SHSIKVF 393
>sp|O05871|PKND_MYCTU Serine/threonine-protein kinase PknD OS=Mycobacterium tuberculosis
GN=pknD PE=1 SV=1
Length = 664
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 30/246 (12%)
Query: 33 SQYLQKRRLQFKIGSRGSEPGCFT---WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK 89
S+ + R ++ GS G+ F P+G+AV ++ V D N+RV + +
Sbjct: 443 SEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ 501
Query: 90 TNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHY 149
T F +P G+AV ++ VAD N+RV + G L P
Sbjct: 502 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-----LNDPDG 556
Query: 150 IAVSNTNRVIVSDSNNHRVQIFDV--NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207
+AV N+ V V+D++N+RV + N +V +G ++AG + Y+
Sbjct: 557 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTV----YVTEH 612
Query: 208 NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN 267
NTN+V+ + + + G L P VAVD + V D GN+
Sbjct: 613 NTNQVVKLLAGSTTSTVLPFTG---------------LNTPLAVAVDSDRTVYVADRGND 657
Query: 268 RIQIFT 273
R+ T
Sbjct: 658 RVVKLT 663
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 158 VIVSDSNNHRVQIFDVNGRVFQ----SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 213
V V + N V + GRV + S GT V F L P +AV V
Sbjct: 431 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-------LYQPQGLAVDGAGTVY 483
Query: 214 VSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF 272
V+D NN V + N + + F L +P G+AVD QG + V D GNNR+
Sbjct: 484 VTDFNNRVVTLAAGSNNQTVLPFDG-------LNYPEGLAVDTQGAVYVADRGNNRVVKL 536
Query: 273 TPDGQFLRAFGCWGSGDGEFKGL---EGVAVMSNGNILVCDRENHRI 316
A G F GL +GVAV ++GN+ V D +N+R+
Sbjct: 537 --------AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRV 575
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 11 NSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF---TWPRGIAVGPDN 67
N + Q L V G G V T R + GS F +P G+AV
Sbjct: 466 NGLYQPQGLAVDGAGTVYVTD----FNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG 521
Query: 68 SIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVF--Q 125
++ VAD N+RV +T F P G+AV ++ V D+ N+RV +
Sbjct: 522 AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 581
Query: 126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFV 185
S+ V F + P IAV V V++ N ++V + + G + F
Sbjct: 582 SNNQVVLPF-------TDITAPWGIAVDEAGTVYVTEHNTNQV-VKLLAGSTTSTVLPFT 633
Query: 186 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 222
G L P +AV + V V+D N RV
Sbjct: 634 G-----------LNTPLAVAVDSDRTVYVADRGNDRV 659
>sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1
SV=2
Length = 653
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 120/313 (38%), Gaps = 66/313 (21%)
Query: 44 KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK--------TNCVFL 95
K+G++GS PG F P + V ++VAD N+R+QV LK + L
Sbjct: 360 KMGAKGSTPGMFNLPVSLYVTSQGEVLVADRGNYRIQVFTRKGFLKEIRRSPSGIDSFVL 419
Query: 96 AF-------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPH 148
+F P +A+ I V DS ++ ++V+ DG V S QL P
Sbjct: 420 SFLGADLPNLTPLSVAMNCQGLIGVTDSYDNSLKVYTLDGHCVACHRS------QLSKPW 473
Query: 149 YIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN 208
I + + +V+D ++ F V+ G+ V K+ + + P ++
Sbjct: 474 GITALPSGQFVVTDVEGGKLWCFTVD------RGSGVVKYSCLCSAV----RPKFVTCDA 523
Query: 209 TNRVIVSD---------SNNHRVQIFDVNGRVITSFGSEG----------SEEGQLKFPR 249
V + N H ++ G I S G +G SE +
Sbjct: 524 EGTVYFTQGLGLNLENRQNEHHLE----GGFSIGSVGPDGQLGRQISHFFSENEDFRCIA 579
Query: 250 GVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE---GVAVMSNGNI 306
G+ VD +G + V DS I F G + +GL G+A+ G +
Sbjct: 580 GMCVDARGDLIVADSSRKEILHFPKGGGYSVLIR---------EGLTCPVGIALTPKGQL 630
Query: 307 LVCDRENHRIQVF 319
LV D +H I+++
Sbjct: 631 LVLDCWDHCIKIY 643
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG------RVFQSDGT 183
F+ K G+ G+ G P + V++ V+V+D N+R+Q+F G R +
Sbjct: 357 FLKKMGAKGSTPGMFNLPVSLYVTSQGEVLVADRGNYRIQVFTRKGFLKEIRRSPSGIDS 416
Query: 184 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEG 243
FV F +G L P +A++ + V+DS ++ ++++ ++G + S
Sbjct: 417 FVLSF--LGADLPNLT-PLSVAMNCQGLIGVTDSYDNSLKVYTLDGHCVACHRS------ 467
Query: 244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSG 288
QL P G+ G V D ++ FT D G + + C S
Sbjct: 468 QLSKPWGITALPSGQFVVTDVEGGKLWCFTVDRGSGVVKYSCLCSA 513
Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FL+ G GS G F + V S G +LV DR N+RIQVF
Sbjct: 357 FLKKMGAKGSTPGMFNLPVSLYVTSQGEVLVADRGNYRIQVF 398
>sp|Q8CCH2|NHLC3_MOUSE NHL repeat-containing protein 3 OS=Mus musculus GN=Nhlrc3 PE=2 SV=1
Length = 347
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNN----HRVQIFD 172
+V VF DG F+ + ++ PH + VS T V ++D + H V+ ++
Sbjct: 86 KVLVFSEDGYFLRAWNY------TVDTPHGMFVSGTPFEQSVWITDVGSGPYGHTVKKYN 139
Query: 173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---NHRVQIFDVNG 229
G + Q GT GK G+ G Q ++P + V +T + + D + N+R+ +
Sbjct: 140 SLGDLVQVLGT-PGKKGT-GLNPLQFDNPAELYVDDTGEMYIVDGDGGLNNRLVKLSQDF 197
Query: 230 RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSG 288
++ G G+ + P V +D G + V D GN R+Q+F D G++L G W +
Sbjct: 198 MILWLRGENGTGPAKFNIPHSVTLDAVGRVWVADRGNKRLQVFDKDTGEWL---GAWDNC 254
Query: 289 DGEFKGLEGVAVMSNGNILVCDREN 313
E +G V +G L+ + N
Sbjct: 255 FTE-EGPSAVRFTPDGKYLIVAQLN 278
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNN----HRVQIFDVNG 229
VF DG F+ + ++ PH + VS T V ++D + H V+ ++ G
Sbjct: 89 VFSEDGYFLRAWNY------TVDTPHGMFVSGTPFEQSVWITDVGSGPYGHTVKKYNSLG 142
Query: 230 RVITSFGSEGSE-----EGQLKFPRGVAVDDQG--YISVGDSG-NNRIQIFTPDGQFLRA 281
++ G+ G + Q P + VDD G YI GD G NNR+ + D L
Sbjct: 143 DLVQVLGTPGKKGTGLNPLQFDNPAELYVDDTGEMYIVDGDGGLNNRLVKLSQDFMILWL 202
Query: 282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G G+G +F V + + G + V DR N R+QVF
Sbjct: 203 RGENGTGPAKFNIPHSVTLDAVGRVWVADRGNKRLQVF 240
>sp|Q5JS37|NHLC3_HUMAN NHL repeat-containing protein 3 OS=Homo sapiens GN=NHLRC3 PE=2 SV=1
Length = 347
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 23/205 (11%)
Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNN----HRVQIFD 172
++ VF DG F+ + ++ PH I ++T V ++D + H V+ +
Sbjct: 86 KILVFTEDGYFLRAWNY------TVDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKKYS 139
Query: 173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---NHRVQIFDVNG 229
G + Q GT GK G+ N Q ++P + V +T + + D + N+R+ +
Sbjct: 140 SFGDLVQVLGT-PGKKGTSLNPL-QFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDF 197
Query: 230 RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSG 288
++ G G+ + P V +D G + V D GN RIQ+F D G++L G W +
Sbjct: 198 MILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWL---GAWNNC 254
Query: 289 DGEFKGLEGVAVMSNGNILVCDREN 313
E +G V +G L+ + N
Sbjct: 255 FTE-EGPSSVRFTPDGKYLIVAQLN 278
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 28/198 (14%)
Query: 142 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-----VFQSDGTFVGKFGSMGNKAG 196
G +HP Y + T + DS N V I VF DG F+ +
Sbjct: 51 GWPKHPEYF--TGTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNY------ 102
Query: 197 QLEHPHYIAVSNT---NRVIVSDSNN----HRVQIFDVNG---RVITSFGSEGSEEGQLK 246
++ PH I ++T V ++D + H V+ + G +V+ + G +G+ L+
Sbjct: 103 TVDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQ 162
Query: 247 F--PRGVAVDDQG--YISVGDSG-NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVM 301
F P + V+D G YI GD G NNR+ + D L G G+G +F V +
Sbjct: 163 FDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLD 222
Query: 302 SNGNILVCDRENHRIQVF 319
S G + V DR N RIQVF
Sbjct: 223 SAGRVWVADRGNKRIQVF 240
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 21/198 (10%)
Query: 95 LAFTWPRGIAVGPDNSIVVADSS---NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151
L F P + V I + D N+R+ D + G G + PH +
Sbjct: 161 LQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVT 220
Query: 152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211
+ + RV V+D N R+Q+FD + G ++G + N E P + + +
Sbjct: 221 LDSAGRVWVADRGNKRIQVFD------KDTGEWLGAW----NNCFTEEGPSSVRFTPDGK 270
Query: 212 -VIVSDSNNHRVQIFDVNGRVITSFGS----EGSEEGQLKFPRGVAVDDQ-GYISVGDSG 265
+IV+ N R+ + V + S G + P + VD + G + V + G
Sbjct: 271 YLIVAQLNLSRLSV--VAAPPVGSIGECSVISTIQLADQVLPHLLEVDRKTGAVYVAEIG 328
Query: 266 NNRIQIFTPDGQFLRAFG 283
++Q + P ++ +FG
Sbjct: 329 AKQVQKYVPLNSYVPSFG 346
>sp|Q5R9V0|NHLC3_PONAB NHL repeat-containing protein 3 OS=Pongo abelii GN=NHLRC3 PE=2 SV=1
Length = 347
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 23/205 (11%)
Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNN----HRVQIFD 172
++ VF DG F+ + ++ PH I ++T V ++D + H V+ +
Sbjct: 86 KILVFTEDGYFLRAWNY------TVDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKKYS 139
Query: 173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---NHRVQIFDVNG 229
G + Q GT GK G+ G Q ++P + V +T + + D + N+R+ +
Sbjct: 140 SFGDLVQVLGT-PGKKGT-GLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDF 197
Query: 230 RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSG 288
++ G G+ + P V +D G + V D GN RIQ+F D G++L G W +
Sbjct: 198 MILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWL---GAWNNC 254
Query: 289 DGEFKGLEGVAVMSNGNILVCDREN 313
E +G V +G L+ + N
Sbjct: 255 FTE-EGPSSVRFTPDGKYLIVAQLN 278
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 28/198 (14%)
Query: 142 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-----VFQSDGTFVGKFGSMGNKAG 196
G ++P Y + T + DS N V I VF DG F+ +
Sbjct: 51 GWPKYPEYF--TGTTFCVTVDSVNGLVYIGQRGDNIPKILVFTEDGYFLRAWNY------ 102
Query: 197 QLEHPHYIAVSNT---NRVIVSDSNN----HRVQIFDVNGRVITSFGSEGSE-----EGQ 244
++ PH I ++T V ++D + H V+ + G ++ G+ G + Q
Sbjct: 103 TVDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTGLNPLQ 162
Query: 245 LKFPRGVAVDDQG--YISVGDSG-NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVM 301
P + V+D G YI GD G NNR+ + D L G G+G +F V +
Sbjct: 163 FDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLD 222
Query: 302 SNGNILVCDRENHRIQVF 319
S G + V DR N RIQVF
Sbjct: 223 SAGRVWVADRGNKRIQVF 240
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 21/198 (10%)
Query: 95 LAFTWPRGIAVGPDNSIVVADSS---NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151
L F P + V I + D N+R+ D + G G + PH +
Sbjct: 161 LQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVT 220
Query: 152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211
+ + RV V+D N R+Q+FD + G ++G + N E P + + +
Sbjct: 221 LDSAGRVWVADRGNKRIQVFD------KDTGEWLGAW----NNCFTEEGPSSVRFTPDGK 270
Query: 212 -VIVSDSNNHRVQIFDVNGRVITSFGS----EGSEEGQLKFPRGVAVDDQ-GYISVGDSG 265
+IV+ N R+ V + S G + P + VD + G + V + G
Sbjct: 271 YLIVAQLNLSRLSF--VTAPPVGSIGECSVISTIQLADQVLPHLLEVDRKTGAVYVAEIG 328
Query: 266 NNRIQIFTPDGQFLRAFG 283
++Q + P ++ +FG
Sbjct: 329 AKQVQKYVPLNSYVPSFG 346
>sp|Q8CH72|TRI32_MOUSE E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1
SV=2
Length = 655
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 120/313 (38%), Gaps = 66/313 (21%)
Query: 44 KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK--------TNCVFL 95
K+G++GS PG F P + V + ++VAD N+R+QV LK + L
Sbjct: 362 KMGAKGSTPGMFNLPVSLYVTSQSEVLVADRGNYRIQVFNRKGFLKEIRRSPSGIDSFVL 421
Query: 96 AF-------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPH 148
+F P +A+ I V DS ++ ++V+ DG V S QL P
Sbjct: 422 SFLGADLPNLTPLSVAMNCHGLIGVTDSYDNSLKVYTMDGHCVACHRS------QLSKPW 475
Query: 149 YIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN 208
I + + +V+D ++ F V+ G V K+ + + P ++
Sbjct: 476 GITALPSGQFVVTDVEGGKLWCFTVD------RGAGVVKYSCLCSAV----RPKFVTCDA 525
Query: 209 TNRVIVSD---------SNNHRVQIFDVNGRVITSFGSEG----------SEEGQLKFPR 249
V + N H ++ G I S G +G SE +
Sbjct: 526 EGTVYFTQGLGLNVENRQNEHHLE----GGFSIGSVGPDGQLGRQISHFFSENEDFRCIA 581
Query: 250 GVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE---GVAVMSNGNI 306
G+ VD +G + V DS I F G + +GL G+A+ G +
Sbjct: 582 GMCVDARGDLIVADSSRKEILHFPKGGGYSVLIR---------EGLTCPVGIALTPKGQL 632
Query: 307 LVCDRENHRIQVF 319
LV D +H ++++
Sbjct: 633 LVLDCWDHCVKIY 645
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 18/196 (9%)
Query: 100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159
P +A P S SS + Q F+ K G+ G+ G P + V++ + V+
Sbjct: 331 PEEVAPSPRASPAKQRSSEAASGIQQC--LFLKKMGAKGSTPGMFNLPVSLYVTSQSEVL 388
Query: 160 VSDSNNHRVQIFDVNG------RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 213
V+D N+R+Q+F+ G R +FV F +G L P +A++ +
Sbjct: 389 VADRGNYRIQVFNRKGFLKEIRRSPSGIDSFVLSF--LGADLPNLT-PLSVAMNCHGLIG 445
Query: 214 VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT 273
V+DS ++ ++++ ++G + S QL P G+ G V D ++ FT
Sbjct: 446 VTDSYDNSLKVYTMDGHCVACHRS------QLSKPWGITALPSGQFVVTDVEGGKLWCFT 499
Query: 274 PD-GQFLRAFGCWGSG 288
D G + + C S
Sbjct: 500 VDRGAGVVKYSCLCSA 515
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
FL+ G GS G F + V S +LV DR N+RIQVF
Sbjct: 359 FLKKMGAKGSTPGMFNLPVSLYVTSQSEVLVADRGNYRIQVF 400
>sp|P19021|AMD_HUMAN Peptidyl-glycine alpha-amidating monooxygenase OS=Homo sapiens
GN=PAM PE=1 SV=2
Length = 973
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 96/245 (39%), Gaps = 55/245 (22%)
Query: 96 AFTWP---------RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEH 146
A WP G+A+ P N++V+ +H +F KF G +E
Sbjct: 501 ALDWPGVYLLPGQVSGVALDPKNNLVIFHRGDH----VWDGNSFDSKFVYQQIGLGPIEE 556
Query: 147 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206
+ ++V D NN V QS G + PH +++
Sbjct: 557 ---------DTILVIDPNN---------AAVLQSSGKNLFYL------------PHGLSI 586
Query: 207 SNTNRVIVSDSNNHRVQIFDVNGR-----VITSFGSEGSEEGQLKFPRGVAVDD-QGYIS 260
V+D H+V D N + ++ GS++ P VAVD G I
Sbjct: 587 DKDGNYWVTDVALHQVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIY 646
Query: 261 VGDS-GNNRIQIFTPDGQFLRAFGCWGSGD----GEFKGLEGVAVMS-NGNILVCDRENH 314
V D N+RI F+P G+F+ +G SG G+F +A++ G + V DREN
Sbjct: 647 VSDGYCNSRIVQFSPSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENG 706
Query: 315 RIQVF 319
RIQ F
Sbjct: 707 RIQCF 711
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 49/249 (19%)
Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA------------FTWPRG 102
F P G+++ D + V D + H+V P + K V + F P
Sbjct: 578 FYLPHGLSIDKDGNYWVTDVALHQVFKLDP--NNKEGPVLILGRSMQPGSDQNHFCQPTD 635
Query: 103 IAVGPDN-SIVVADS-SNHRVQVFQSDGTFVGKFGSMGNKA----GQLEHPHYIA-VSNT 155
+AV P +I V+D N R+ F G F+ ++G + + GQ PH +A V
Sbjct: 636 VAVDPGTGAIYVSDGYCNSRIVQFSPSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLL 695
Query: 156 NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH-----------PHYI 204
++ V+D N R+Q F + + F + K S G + + PH+
Sbjct: 696 GQLCVADRENGRIQCFKTDTKEFVRE----IKHSSFGRNVFAISYIPGLLFAVNGKPHFG 751
Query: 205 AVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS 264
+++ SN + IF + P + + G + +GD+
Sbjct: 752 DQEPVQGFVMNFSNGEIIDIFKPVRK-------------HFDMPHDIVASEDGTVYIGDA 798
Query: 265 GNNRIQIFT 273
N + FT
Sbjct: 799 HTNTVWKFT 807
>sp|P91268|PAL_CAEEL Probable peptidyl-alpha-hydroxyglycine alpha-amidating lyase
F21F3.1 OS=Caenorhabditis elegans GN=F21F3.1 PE=1 SV=2
Length = 350
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 27/218 (12%)
Query: 123 VFQSDGTFVGKFGSMGNKAGQL------EHPHYIAVSNTNRVIVSDS-NNHRVQIFD--- 172
VF+ D +G F + GQ+ ++ H +A + RV S N+H D
Sbjct: 42 VFEQDRELIGLFNP-SKEIGQVSGLAVNKNGHIVAFHRSGRVWDEKSFNDHETFNKDLGV 100
Query: 173 VNGR---VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG 229
+N + + + + +FG AG PH + + N V+D +H+V D
Sbjct: 101 INNKTIAIISREKKVIDEFG-----AGLFYMPHGLTIDNNGDYWVTDVGSHQVHKIDAKT 155
Query: 230 -RVITSFGSE---GSEEGQLKFPRGVAVDDQGYISVGDS-GNNRIQIFTPDGQFLRAFGC 284
+++ S G + G ++ P VAV G+I V D N+RI F G +
Sbjct: 156 QKIVMSLGEKMVPGEDQAHFCKPTDVAVAKNGHIFVADGYCNSRILKFDAKGNLMAQINA 215
Query: 285 WGSGD--GEFKGLEGVAVMSNGNIL-VCDRENHRIQVF 319
+ EF ++++ + NI+ V DREN R+Q F
Sbjct: 216 ATEENQPSEFVVPHSLSLIEDMNIVCVADRENQRVQCF 253
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 117 SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR 176
+N + + + + +FG AG PH + + N V+D +H+V D
Sbjct: 102 NNKTIAIISREKKVIDEFG-----AGLFYMPHGLTIDNNGDYWVTDVGSHQVHKIDAKT- 155
Query: 177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-NHRVQIFDVNGRVITSF 235
Q +G+ G P +AV+ + V+D N R+ FD G ++
Sbjct: 156 --QKIVMSLGEKMVPGEDQAHFCKPTDVAVAKNGHIFVADGYCNSRILKFDAKGNLMAQI 213
Query: 236 --GSEGSEEGQLKFPRGVA-VDDQGYISVGDSGNNRIQIFT 273
+E ++ + P ++ ++D + V D N R+Q F+
Sbjct: 214 NAATEENQPSEFVVPHSLSLIEDMNIVCVADRENQRVQCFS 254
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 21/136 (15%)
Query: 53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-------------FTW 99
G F P G+ + + V D +H+V D KT + ++ F
Sbjct: 122 GLFYMPHGLTIDNNGDYWVTDVGSHQVH----KIDAKTQKIVMSLGEKMVPGEDQAHFCK 177
Query: 100 PRGIAVGPDNSIVVADS-SNHRVQVFQSDGTFVGKF--GSMGNKAGQLEHPHYIA-VSNT 155
P +AV + I VAD N R+ F + G + + + N+ + PH ++ + +
Sbjct: 178 PTDVAVAKNGHIFVADGYCNSRILKFDAKGNLMAQINAATEENQPSEFVVPHSLSLIEDM 237
Query: 156 NRVIVSDSNNHRVQIF 171
N V V+D N RVQ F
Sbjct: 238 NIVCVADRENQRVQCF 253
>sp|P10731|AMD_BOVIN Peptidyl-glycine alpha-amidating monooxygenase OS=Bos taurus GN=PAM
PE=1 SV=2
Length = 972
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 110/275 (40%), Gaps = 39/275 (14%)
Query: 52 PGCFTWP---RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW-PRGIAVGP 107
PG + P G+A+ P N++V+ +H N F + RG+
Sbjct: 505 PGVYLLPGQVSGVALDPQNNLVIFHRGDHV---------WDGNSFDSKFVYQQRGLGPIE 555
Query: 108 DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 167
+++I+V D +N V QS G + PH +++ V+D H
Sbjct: 556 EDTILVIDPNN--AAVLQSSGKNLFYL------------PHGLSIDKDGNYWVTDVALH- 600
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSN-NHRVQIF 225
Q+F ++ + + +G+ G+ P +AV +T + VSD N R+ F
Sbjct: 601 -QVFKLDPKSKEGPLLTLGRSMQPGSDQNHFCQPTDVAVDPDTGTIYVSDGYCNSRLVQF 659
Query: 226 DVNGRVITSFGSEGSEE----GQLKFPRGVA-VDDQGYISVGDSGNNRIQIFTPD-GQFL 279
+G+ IT +G E GQ + P +A V G + V D N RIQ F D +F+
Sbjct: 660 SPSGKFITQWGEASLESSPKPGQFRVPHSLALVPPLGQLCVADRENGRIQCFKTDTKEFV 719
Query: 280 RAFGCWGSGDGEF--KGLEGVAVMSNGNILVCDRE 312
R G F + G+ NG D+E
Sbjct: 720 REIKHPSFGRNVFAISYIPGLLFAVNGKPYFEDQE 754
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 61/248 (24%)
Query: 96 AFTWP---------RGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEH 146
A WP G+A+ P N++V+ +H +F KF G +E
Sbjct: 501 ALDWPGVYLLPGQVSGVALDPQNNLVIFHRGDH----VWDGNSFDSKFVYQQRGLGPIEE 556
Query: 147 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206
+ ++V D NN V QS G + PH +++
Sbjct: 557 ---------DTILVIDPNN---------AAVLQSSGKNLFYL------------PHGLSI 586
Query: 207 SNTNRVIVSDSNNHRVQIFDVNGR--VITSFG---SEGSEEGQLKFPRGVAVD-DQGYIS 260
V+D H+V D + + + G GS++ P VAVD D G I
Sbjct: 587 DKDGNYWVTDVALHQVFKLDPKSKEGPLLTLGRSMQPGSDQNHFCQPTDVAVDPDTGTIY 646
Query: 261 VGDS-GNNRIQIFTPDGQFLRAFGCWGSGD-------GEFKGLEGVAVMSN-GNILVCDR 311
V D N+R+ F+P G+F+ WG G+F+ +A++ G + V DR
Sbjct: 647 VSDGYCNSRLVQFSPSGKFITQ---WGEASLESSPKPGQFRVPHSLALVPPLGQLCVADR 703
Query: 312 ENHRIQVF 319
EN RIQ F
Sbjct: 704 ENGRIQCF 711
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 93/239 (38%), Gaps = 29/239 (12%)
Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFD----------LKTNCVFLAFTWPRGIA 104
F P G+++ D + V D + H+V P ++ F P +A
Sbjct: 578 FYLPHGLSIDKDGNYWVTDVALHQVFKLDPKSKEGPLLTLGRSMQPGSDQNHFCQPTDVA 637
Query: 105 VGPDN-SIVVADS-SNHRVQVFQSDGTFVGKFGSM----GNKAGQLEHPHYIA-VSNTNR 157
V PD +I V+D N R+ F G F+ ++G K GQ PH +A V +
Sbjct: 638 VDPDTGTIYVSDGYCNSRLVQFSPSGKFITQWGEASLESSPKPGQFRVPHSLALVPPLGQ 697
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
+ V+D N R+Q F + + F + K S G + + + + + D
Sbjct: 698 LCVADRENGRIQCFKTDTKEFVRE----IKHPSFGRNVFAISYIPGLLFAVNGKPYFEDQ 753
Query: 218 NNHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT 273
VQ F +N G +I F P +A + G + VGD+ N + FT
Sbjct: 754 EP--VQGFVMNFSSGEIIDVF---KPVRKHFDMPHDIAASEDGTVYVGDAHTNTVWKFT 807
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 50/205 (24%)
Query: 49 GSEPGCFTWPRGIAVGPD-----------NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF 97
GS+ F P +AV PD NS +V S + + + L+++ F
Sbjct: 624 GSDQNHFCQPTDVAVDPDTGTIYVSDGYCNSRLVQFSPSGKFITQWGEASLESSPKPGQF 683
Query: 98 TWPRGIA-VGPDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHY----IA 151
P +A V P + VAD N R+Q F++D FV +++HP + A
Sbjct: 684 RVPHSLALVPPLGQLCVADRENGRIQCFKTDTKEFV----------REIKHPSFGRNVFA 733
Query: 152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL-----------EH 200
+S + +F VNG+ + D V F M +G++ +
Sbjct: 734 ISYIPGL-----------LFAVNGKPYFEDQEPVQGF-VMNFSSGEIIDVFKPVRKHFDM 781
Query: 201 PHYIAVSNTNRVIVSDSNNHRVQIF 225
PH IA S V V D++ + V F
Sbjct: 782 PHDIAASEDGTVYVGDAHTNTVWKF 806
>sp|P14925|AMD_RAT Peptidyl-glycine alpha-amidating monooxygenase OS=Rattus norvegicus
GN=Pam PE=1 SV=1
Length = 976
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 35/242 (14%)
Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA------------FTWPRG 102
F P G+++ D + V D + H+V PH K + + F P
Sbjct: 581 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPH--SKEGPLLILGRSMQPGSDQNHFCQPTD 638
Query: 103 IAVGPDN-SIVVADS-SNHRVQVFQSDGTFVGKFGSMGN----KAGQLEHPHYIA-VSNT 155
+AV P ++ V+D N R+ F G FV ++G + + GQ PH +A V +
Sbjct: 639 VAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 698
Query: 156 NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH-PHYIAVSNTNRVIV 214
+++ V+D N R+Q F + + F + K S G + + P ++ N
Sbjct: 699 DQLCVADRENGRIQCFKTDTKEFVRE----IKHASFGRNVFAISYIPGFLFAVNGKPYF- 753
Query: 215 SDSNNHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI 271
+ VQ F +N G +I F P + + G + +GD+ N +
Sbjct: 754 --GDQEPVQGFVMNFSSGEIIDVF---KPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK 808
Query: 272 FT 273
FT
Sbjct: 809 FT 810
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-----VITSFGSEGSEEGQLKFPRGVAVD- 254
PH +++ V+D H+V D + + ++ GS++ P VAV+
Sbjct: 584 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP 643
Query: 255 DQGYISVGDS-GNNRIQIFTPDGQFLRAFGCWGSGD----GEFKGLEGVAVMSNGNIL-V 308
G + V D N+RI F+P G+F+ +G SG G+F +A++ + + L V
Sbjct: 644 STGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV 703
Query: 309 CDRENHRIQVF 319
DREN RIQ F
Sbjct: 704 ADRENGRIQCF 714
>sp|P97467|AMD_MOUSE Peptidyl-glycine alpha-amidating monooxygenase OS=Mus musculus
GN=Pam PE=1 SV=2
Length = 979
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 31/240 (12%)
Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF----------LAFTWPRGIA 104
F P G+++ D + V D + H+V P V F P +A
Sbjct: 581 FYLPHGLSIDTDGNYWVTDVALHQVFKLEPRSKEGPLLVLGRSMQPGSDQNHFCQPTDVA 640
Query: 105 VGPDN-SIVVADS-SNHRVQVFQSDGTFVGKFGSMGN----KAGQLEHPHYIA-VSNTNR 157
V P ++ V+D N R+ F G F+ ++G + K GQ PH +A V + N+
Sbjct: 641 VEPSTGAVFVSDGYCNSRIVQFSPSGKFITQWGEESSGSSPKPGQFSVPHSLALVPHLNQ 700
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH-PHYIAVSNTNRVIVSD 216
+ V+D N R+Q F + + F + K S G + + P ++ N
Sbjct: 701 LCVADRENGRIQCFKTDTKEFVRE----IKHASFGRNVFAISYIPGFLFAVNGKPYF--- 753
Query: 217 SNNHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT 273
+ VQ F +N G +I F P + + G + +GD+ N + FT
Sbjct: 754 GDQEPVQGFVMNFSSGEIIDVF---KPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 810
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-------VITSFGSEGSEEGQLKFPRGVAV 253
PH +++ V+D H Q+F + R V+ GS++ P VAV
Sbjct: 584 PHGLSIDTDGNYWVTDVALH--QVFKLEPRSKEGPLLVLGRSMQPGSDQNHFCQPTDVAV 641
Query: 254 D-DQGYISVGDS-GNNRIQIFTPDGQFLRAFGCWGSGD----GEFKGLEGVAVMSNGNIL 307
+ G + V D N+RI F+P G+F+ +G SG G+F +A++ + N L
Sbjct: 642 EPSTGAVFVSDGYCNSRIVQFSPSGKFITQWGEESSGSSPKPGQFSVPHSLALVPHLNQL 701
Query: 308 -VCDRENHRIQVF 319
V DREN RIQ F
Sbjct: 702 CVADRENGRIQCF 714
>sp|Q8BZW8|NHLC2_MOUSE NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1
Length = 725
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 34/183 (18%)
Query: 87 DLKTNCVFLAFTWPRGIAVGPDNSIVVA-DSSNHRVQVFQSDGTFVGKF--------GSM 137
+L+ +C WP + +GP +++ + HR ++F + + G +
Sbjct: 156 ELEVSC------WPTLVILGPRGNLLFSLIGEGHRDKLFSYTSIALKYYKDRGQIRDGKI 209
Query: 138 GNK-------AGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQS-DGTFVGKF 188
G K L P +AV + T R++V+D+ +HR+ + NGR+ S G G+
Sbjct: 210 GIKLFKESLPPSPLLFPGKVAVDHATGRLVVADTGHHRILVIQKNGRIQSSIGGPNPGRK 269
Query: 189 GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFG--------SEGS 240
M +++ P +A+++ N + V+D+ NH ++ D+ +T+ +EG
Sbjct: 270 DGMFSESS-FNSPQGVAIAD-NVIYVADTENHLIRKIDLEAEKVTTVAGVGIQGTDTEGG 327
Query: 241 EEG 243
EEG
Sbjct: 328 EEG 330
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 97 FTWPRGIAVG---PDNSIVVADSSNHRVQVF-------------QSDGTFVGKFGSMGNK 140
F P G+A+ P + + VADS + V+ + D + FG +
Sbjct: 409 FAQPSGLALASEEPWSCLFVADSESSTVRTVSLRDGAVKHLVGGERDPMNLFAFGDVDGA 468
Query: 141 A--GQLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDVNGR-VFQSDGTFVGKFGSMGNKAG 196
+L+HP +A +V+ V+DS NH++++ D + GT S
Sbjct: 469 GINAKLQHPLGVAWDEERQVLYVADSYNHKIKVVDPKTKGCTTLAGTGDASDASSSFAES 528
Query: 197 QLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQL--KFPR 249
P + + + R++ V+D+NNH++++ D+ R ++ S+ + FPR
Sbjct: 529 AFNEPGGLCIGESGRLLYVADTNNHQIKVMDLEARTVSVLPVCKSDSAVVDGSFPR 584
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 120/311 (38%), Gaps = 86/311 (27%)
Query: 40 RLQFKIGSRGSEPG---------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT 90
R+Q IG G PG F P+G+A+ DN I VAD+ NH ++ DL+
Sbjct: 256 RIQSSIG--GPNPGRKDGMFSESSFNSPQGVAIA-DNVIYVADTENHLIR----KIDLEA 308
Query: 91 NCVFLA--------------------FTWPRGIAVGPDNSIV-------VADSSNHRVQV 123
V + P +A+G S V +A + H++
Sbjct: 309 EKVTTVAGVGIQGTDTEGGEEGDKQPISSPWDVALGTSGSEVQRNDILWIAMAGTHQIWA 368
Query: 124 FQSD-GTFVGK----------FGSMGN----------KAGQLEHPHYIAVSNTNR---VI 159
D GT K F GN KAG P +A+++ +
Sbjct: 369 LLLDSGTLPKKSDLKKGTCIRFAGSGNEENRNNAYPHKAG-FAQPSGLALASEEPWSCLF 427
Query: 160 VSDSNNHRVQIFDV-NGRVF-----QSDGTFVGKFGSMGNKA--GQLEHPHYIAVSNTNR 211
V+DS + V+ + +G V + D + FG + +L+HP +A +
Sbjct: 428 VADSESSTVRTVSLRDGAVKHLVGGERDPMNLFAFGDVDGAGINAKLQHPLGVAWDEERQ 487
Query: 212 VI-VSDSNNHRVQIFDVNGRVITSFGSEGS--------EEGQLKFPRGVAVDDQG-YISV 261
V+ V+DS NH++++ D + T+ G E P G+ + + G + V
Sbjct: 488 VLYVADSYNHKIKVVDPKTKGCTTLAGTGDASDASSSFAESAFNEPGGLCIGESGRLLYV 547
Query: 262 GDSGNNRIQIF 272
D+ N++I++
Sbjct: 548 ADTNNHQIKVM 558
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 198 LEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS-------EEGQLKFPR 249
L P +AV + T R++V+D+ +HR+ + NGR+ +S G E P+
Sbjct: 223 LLFPGKVAVDHATGRLVVADTGHHRILVIQKNGRIQSSIGGPNPGRKDGMFSESSFNSPQ 282
Query: 250 GVAVDDQGYISVGDSGNNRIQ 270
GVA+ D I V D+ N+ I+
Sbjct: 283 GVAIADN-VIYVADTENHLIR 302
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 58 PRGIAVGPDNSIV-VADSSNHRVQVCFPHF-------------DLKTNCVFLAFTWPRGI 103
P G+A + ++ VADS NH+++V P D ++ AF P G+
Sbjct: 477 PLGVAWDEERQVLYVADSYNHKIKVVDPKTKGCTTLAGTGDASDASSSFAESAFNEPGGL 536
Query: 104 AVGPDNSIV-VADSSNHRVQVFQSDGTFV 131
+G ++ VAD++NH+++V + V
Sbjct: 537 CIGESGRLLYVADTNNHQIKVMDLEARTV 565
>sp|Q9BRZ2|TRI56_HUMAN E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1
SV=3
Length = 755
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 14/185 (7%)
Query: 139 NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG--RVFQSDGTFVGKFGSMGNKAG 196
N G+++ +++S + + + + RV + V G V+ +G+ +F G +
Sbjct: 574 NPNGEVQWRRALSLSQASHAVAALPSGDRVAV-SVAGHVEVYNMEGSLATRFIPGGKASR 632
Query: 197 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ 256
L ++ S + SD + V I D G+V+ + G Q P V+VD +
Sbjct: 633 GLRALVFLTTSPQGHFVGSDWQQNSVVICDGLGQVVGEYKGPGLHGCQ---PGSVSVDKK 689
Query: 257 GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEG--VAVMSNGNILVCDRENH 314
GYI + N++ I P G L F + GLE V M +G LV N
Sbjct: 690 GYIFLTLREVNKVVILDPKGSLLGDF------LTAYHGLEKPRVTTMVDGRYLVVSLSNG 743
Query: 315 RIQVF 319
I +F
Sbjct: 744 TIHIF 748
>sp|Q3UP44|NHLC4_MOUSE NHL-repeat-containing protein 4 OS=Mus musculus GN=Nhlrc4 PE=2 SV=1
Length = 136
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGK-FGSMGNKAGQLEHPH 202
LE P ++ VS+ VQ+F + S GT G FG HP
Sbjct: 17 LEGPCWVGPGPDGGFAVSEEFG-DVQLFGSAHQPLGSLGTLTGHNFG----------HPA 65
Query: 203 YIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVG 262
+ +IV+D H+V +F G I EG LK P G+A QG + V
Sbjct: 66 GVCSDAEGSIIVADEQRHQVTLFPRVGPPIC-LQLEG-----LKRPLGMACAPQGQLVVA 119
Query: 263 DSGNNRIQIF 272
D+G+N I+++
Sbjct: 120 DAGDNCIKLY 129
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVA 114
F P G+ + SI+VAD H+V + FP P G+A P +VVA
Sbjct: 61 FGHPAGVCSDAEGSIIVADEQRHQVTL-FPRVGPPICLQLEGLKRPLGMACAPQGQLVVA 119
Query: 115 DSSNHRVQVFQSDGTFV 131
D+ ++ ++++Q G
Sbjct: 120 DAGDNCIKLYQYLGEMA 136
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 22/151 (14%)
Query: 84 PHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSM-GNKAG 142
P ++ L P + GPD V++ VQ+F S +G G++ G+ G
Sbjct: 4 PTWEPLAPTSMLGLEGPCWVGPGPDGGFAVSEEFG-DVQLFGSAHQPLGSLGTLTGHNFG 62
Query: 143 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR--VFQSDGTFVGKFGSMGNKAGQLEH 200
HP + +IV+D H+V +F G Q +G L+
Sbjct: 63 ---HPAGVCSDAEGSIIVADEQRHQVTLFPRVGPPICLQLEG---------------LKR 104
Query: 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
P +A + +++V+D+ ++ ++++ G +
Sbjct: 105 PLGMACAPQGQLVVADAGDNCIKLYQYLGEM 135
>sp|P12890|AMDB_XENLA Peptidyl-glycine alpha-amidating monooxygenase B OS=Xenopus laevis
GN=pam-b PE=2 SV=1
Length = 875
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGR------VITSFGSEGSEEGQLKFPRGVAVD 254
PH + + V+D H Q+F V V+ GS+ P VAVD
Sbjct: 481 PHGLTIDRDGNYWVTDVALH--QVFKVGAEKETPLLVLGRAFQPGSDRKHFCQPTDVAVD 538
Query: 255 D-QGYISVGDS-GNNRIQIFTPDGQFLRAFGCWGSGD----GEFKGLEGVAVMSN-GNIL 307
G V D N+RI F+P+G F+ +G S + G+F+ + ++S+ G +
Sbjct: 539 PITGNFFVADGYCNSRIMQFSPNGMFIMQWGEETSSNLPRPGQFRIPHSLTMISDQGQLC 598
Query: 308 VCDRENHRIQVF 319
V DREN RIQ F
Sbjct: 599 VADRENGRIQCF 610
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 97/244 (39%), Gaps = 37/244 (15%)
Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----------FTWPRGI 103
F P G+ + D + V D + H QV + +T + L F P +
Sbjct: 478 FFLPHGLTIDRDGNYWVTDVALH--QVFKVGAEKETPLLVLGRAFQPGSDRKHFCQPTDV 535
Query: 104 AVGP--DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGN----KAGQLEHPHYIA-VSNTN 156
AV P N V N R+ F +G F+ ++G + + GQ PH + +S+
Sbjct: 536 AVDPITGNFFVADGYCNSRIMQFSPNGMFIMQWGEETSSNLPRPGQFRIPHSLTMISDQG 595
Query: 157 RVIVSDSNNHRVQIFDVNGRVFQSDGTFVG--KFGSMGNKAGQLEH-PHYIAVSNTNRVI 213
++ V+D N R+Q F G FV K G + + + P + + +
Sbjct: 596 QLCVADRENGRIQCFHAK------TGEFVKQIKHQEFGREVFAVSYAPGGVLYAVNGKPY 649
Query: 214 VSDSNNHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
DS VQ F +N G ++ +F + P +A D G + VGD+ N +
Sbjct: 650 YGDSTP--VQGFMLNFSNGDILDTFIPA---RKNFEMPHDIAAGDDGTVYVGDAHANAVW 704
Query: 271 IFTP 274
F+P
Sbjct: 705 KFSP 708
>sp|P08478|AMDA_XENLA Peptidyl-glycine alpha-amidating monooxygenase A OS=Xenopus laevis
GN=pam-a PE=1 SV=3
Length = 935
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 33/229 (14%)
Query: 60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNH 119
G+A+ P N++ + HR + N V+ RGI +++I+V D S+
Sbjct: 412 GLALDPKNNLAIF----HRGDHVWDENSFDRNFVYQQ----RGIGPIQESTILVVDPSSS 463
Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ 179
+V S G L PH + + V+D H Q+F + G +
Sbjct: 464 KV------------LKSTGKNLFFL--PHGLTIDRDGNYWVTDVALH--QVFKL-GAGKE 506
Query: 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIFDVNGRVITSFGS 237
+ +G+ G+ P +AV T V+D N R+ F NG I +G
Sbjct: 507 TPLLVLGRAFQPGSDRKHFCQPTDVAVDPITGNFFVADGYCNSRIMQFSPNGMFIMQWGE 566
Query: 238 EGS----EEGQLKFPRGVA-VDDQGYISVGDSGNNRIQIFTPD-GQFLR 280
E S GQ + P + V DQG + V D N RIQ F + G F++
Sbjct: 567 ETSSNVPRPGQFRIPHSLTMVPDQGQLCVADRENGRIQCFHAETGNFVK 615
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 96/256 (37%), Gaps = 61/256 (23%)
Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL----KTNCVFLA-----------FTW 99
F P G+ + D + V D + H+V F L +T + L F
Sbjct: 474 FFLPHGLTIDRDGNYWVTDVALHQV------FKLGAGKETPLLVLGRAFQPGSDRKHFCQ 527
Query: 100 PRGIAVGP--DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGN----KAGQLEHPHYIA-V 152
P +AV P N V N R+ F +G F+ ++G + + GQ PH + V
Sbjct: 528 PTDVAVDPITGNFFVADGYCNSRIMQFSPNGMFIMQWGEETSSNVPRPGQFRIPHSLTMV 587
Query: 153 SNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY----IAVSN 208
+ ++ V+D N R+Q F GN Q++H + AVS
Sbjct: 588 PDQGQLCVADRENGRIQCF----------------HAETGNFVKQIKHQEFGREVFAVSY 631
Query: 209 TNRVIVSDSN-------NHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAVDDQGY 258
++ N + VQ F +N G ++ +F P +A D G
Sbjct: 632 APGGVLYAVNGKPYYGYSAPVQGFMLNFSNGDILDTFIPA---RKNFDMPHDIAAADDGT 688
Query: 259 ISVGDSGNNRIQIFTP 274
+ VGD+ N + F+P
Sbjct: 689 VYVGDAHANAVWKFSP 704
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNG------RVITSFGSEGSEEGQLKFPRGVAVD 254
PH + + V+D H Q+F + V+ GS+ P VAVD
Sbjct: 477 PHGLTIDRDGNYWVTDVALH--QVFKLGAGKETPLLVLGRAFQPGSDRKHFCQPTDVAVD 534
Query: 255 D-QGYISVGDS-GNNRIQIFTPDGQFLRAFGCWGSGD----GEFKGLEGVAVMSN-GNIL 307
G V D N+RI F+P+G F+ +G S + G+F+ + ++ + G +
Sbjct: 535 PITGNFFVADGYCNSRIMQFSPNGMFIMQWGEETSSNVPRPGQFRIPHSLTMVPDQGQLC 594
Query: 308 VCDRENHRIQVF 319
V DREN RIQ F
Sbjct: 595 VADRENGRIQCF 606
>sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2
SV=1
Length = 727
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 30/165 (18%)
Query: 97 FTWPRGIAVG---PDNSIVVADSSNHRVQVFQ-SDGT---FVG---------KFGSMGNK 140
F P G+++ P N + VADS + V++ DG VG FG +
Sbjct: 404 FAQPSGLSLASEEPWNCLFVADSESSTVRMISLKDGAVKHLVGGERDPLNLFAFGDVDGA 463
Query: 141 A--GQLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197
+L+HP I +++ V+DS NH++++ D ++ T G G N G
Sbjct: 464 GINAKLQHPLGITWDKKRKLLYVADSYNHKIKVVDPK---MKNCATLAGT-GEASNVVGS 519
Query: 198 ------LEHPHYIAVSNTNRVI-VSDSNNHRVQIFDVNGRVITSF 235
P + + R++ V+D+NNH++++ D+ ++++
Sbjct: 520 SFTQSTFNEPGGLCIEENGRLVYVADTNNHQIKVLDLETKILSML 564
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 245 LKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDGQFLRAFGCWGSG-------DGEFKGLE 296
L FP V VD G + + D+G++RI + +GQ L G SG + F +
Sbjct: 218 LLFPGKVTVDKSGERLVIADTGHHRILVTLKNGQILHTIGGPNSGRKDGRFSEAAFNSPQ 277
Query: 297 GVAVMSNGNILVCDRENHRIQ 317
GVA+ N I V D ENH I+
Sbjct: 278 GVAI-KNNVIYVADTENHLIR 297
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 99 WPRGIAVGPDNSIV---VADSSNHRVQVFQS-------------DGTFVGKFGSMGNKAG 142
WP + +GP +++ V + ++ +F S D + K
Sbjct: 157 WPTLVILGPRGNMLFSLVGEGHKEKLFLFTSITLKFYKERGQIKDNSIGIKLYKDSLPPS 216
Query: 143 QLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH- 200
L P + V + R++++D+ +HR+ + NG++ + G + G K G+
Sbjct: 217 PLLFPGKVTVDKSGERLVIADTGHHRILVTLKNGQILHTIGG-----PNSGRKDGRFSEA 271
Query: 201 ----PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG 239
P +A+ N N + V+D+ NH ++ D+ ++T+ G
Sbjct: 272 AFNSPQGVAIKN-NVIYVADTENHLIRKIDLELEIVTTVAGIG 313
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 26/98 (26%)
Query: 45 IGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-------- 96
I ++ P TW + + + VADS NH+++V P NC LA
Sbjct: 465 INAKLQHPLGITWDKKRKL-----LYVADSYNHKIKVVDPKM---KNCATLAGTGEASNV 516
Query: 97 ---------FTWPRGIAVGPDNSIV-VADSSNHRVQVF 124
F P G+ + + +V VAD++NH+++V
Sbjct: 517 VGSSFTQSTFNEPGGLCIEENGRLVYVADTNNHQIKVL 554
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 211 RVIVSDSNNHRVQIFDVNGRVITSFGSEGS-------EEGQLKFPRGVAVDDQGYISVGD 263
R++++D+ +HR+ + NG+++ + G S E P+GVA+ + I V D
Sbjct: 232 RLVIADTGHHRILVTLKNGQILHTIGGPNSGRKDGRFSEAAFNSPQGVAIKNN-VIYVAD 290
Query: 264 SGNNRIQ 270
+ N+ I+
Sbjct: 291 TENHLIR 297
>sp|Q80VI1|TRI56_MOUSE E3 ubiquitin-protein ligase TRIM56 OS=Mus musculus GN=Trim56 PE=1
SV=1
Length = 734
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 14/182 (7%)
Query: 142 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG--RVFQSDGTFVGKFGSMGNKAGQLE 199
G+++ ++++ ++ + + RV + V G V++ DG+ +F G +
Sbjct: 556 GEIQWRRSLSLTQSSHAVAAMPCGDRVAV-SVAGHVEVYKKDGSLATRFIPGGKASRGQR 614
Query: 200 HPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYI 259
++ S + SD + V D G+VI + G Q P V+VD +GYI
Sbjct: 615 ALVFLTTSPQGNFVGSDWQQNSVVFCDGLGQVIWEYKGPGLHGCQ---PGSVSVDKKGYI 671
Query: 260 SVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEG--VAVMSNGNILVCDRENHRIQ 317
+ N++ I P G L F + GLE V M +G LV N I
Sbjct: 672 FLTLREVNKVVILDPKGSLLGDFL------TAYHGLEKPRVTTMVDGKYLVVSLSNGTIH 725
Query: 318 VF 319
VF
Sbjct: 726 VF 727
>sp|Q01578|GNL_ZYMMO Gluconolactonase OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=gnl PE=1 SV=2
Length = 356
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
Query: 102 GIAVGPDNSIVVADSSNHRVQ----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
G+ VGPD I VADS + V + V + K + P+ + S +
Sbjct: 131 GMKVGPDGKIWVADSGTRAIMKVDPVTRQRSVVVDNY-----KGKRFNSPNDLFFSKSGA 185
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTF-VGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVS 215
V +D + + + + +G F + G + L P+ +A+S + ++ VS
Sbjct: 186 VYFTDPPYGLTNLDESDIKEMNYNGVFRLSPDGRLDLIEAGLSRPNGLALSPDETKLYVS 245
Query: 216 DSN----NHRVQIFDVNG-----RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN 266
+S+ N V D NG ++ +F E ++G P G+ +D QG + G
Sbjct: 246 NSDRASPNIWVYSLDSNGLPTSRTLLRNFRKEYFDQGLAGLPDGMNIDKQGNLFASAPGG 305
Query: 267 NRIQIFTPDGQFL 279
I IF PDG+ L
Sbjct: 306 --IYIFAPDGECL 316
>sp|E1BD59|TRI56_BOVIN E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus GN=TRIM56 PE=3
SV=1
Length = 732
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 95/251 (37%), Gaps = 41/251 (16%)
Query: 100 PRGIAVGP--DNSIVVADSSNHRVQVFQSDGTFVGK--------------------FGSM 137
PR + P I+VAD N ++ F +G + G F +
Sbjct: 485 PRITGLCPFGSREILVADEQNRALKRFSLNGDYRGAVPVPEGCSPCSVAALQDTVAFSAA 544
Query: 138 G-----NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG--RVFQSDGTFVGKFGS 190
N G+++ +++ + + + + RV + V+G V+ +G+ +F
Sbjct: 545 ARLYLINHNGEVQWRRALSLCQASHAVAAMPSGDRVAV-SVSGHVEVYNMEGSLATRFIP 603
Query: 191 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRG 250
G L ++ S + SD + + + D G+V+ + G Q P
Sbjct: 604 GGKANRGLRALVFLTTSPQGHFVGSDWQQNSLVVCDGLGQVVGEYRGPGLHGCQ---PGS 660
Query: 251 VAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEG--VAVMSNGNILV 308
V+VD +GYI + N++ I P G L G + GLE V M +G LV
Sbjct: 661 VSVDKKGYIFLTLREVNKVVILDPKGSLL------GDFLTAYHGLEKPRVTTMVDGRYLV 714
Query: 309 CDRENHRIQVF 319
N I VF
Sbjct: 715 VSLSNGTIHVF 725
>sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2 OS=Bos taurus GN=NHLRC2 PE=2 SV=1
Length = 726
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 76/358 (21%), Positives = 146/358 (40%), Gaps = 76/358 (21%)
Query: 36 LQKRRLQFKIGSRGSEPGCFTWPRGIAVG-PDNSIVVADSSNHRVQVCFPHFDL------ 88
++ ++ K+ P +P I V N +V+AD+ +HR+ V + + +
Sbjct: 204 IRANKIGIKLYKDSLPPSPLLFPGKITVDHVSNRLVIADTGHHRILVVWKNGQIQYSIGG 263
Query: 89 ----KTNCVF--LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMG---- 138
+ + +F +F P+G+A+ +N I VAD+ NH ++ + V +G
Sbjct: 264 PNPGRKDGIFSESSFNSPQGVAIM-NNIIYVADTENHLIRKIDLEAEMVSTVAGIGIQGT 322
Query: 139 NKAG-------QLEHPHYIA-------VSNTNRVIVSDSNNHRVQIFDVN-GRVFQSDGT 183
+K G + P + V N + ++ + H++ ++ GR+ + +
Sbjct: 323 DKEGGAKGDEQPISSPWDVVFGRSGPEVQRDNILWIAMAGTHQIWALLLDCGRLPKKNEL 382
Query: 184 FVG---KFGSMGN----------KAGQLEHPHYIAVSNT---NRVIVSDSNNHRVQIFDV 227
G +F GN KAG P +++++ + + V+DS + V+ +
Sbjct: 383 KKGTCLRFAGSGNEENRNNAYPHKAG-FAQPSGLSLASEGPWSCLFVADSESSTVRTVSL 441
Query: 228 -NGRVITSFGSE---------GSEEG-----QLKFPRGVAVDDQ-GYISVGDSGNNRIQI 271
+G V G E G +G +L+ P GV D + + V DS N++I++
Sbjct: 442 KDGAVKHLVGGERDPMNLFAFGDVDGVGINARLQHPLGVTWDQKRNLLYVADSYNHKIKV 501
Query: 272 FTPDGQFLRAFGCWGSG---------DGEFKGLEGVAVMSNGNIL-VCDRENHRIQVF 319
P + G+ D F G+ + NG +L V D NH+I+V
Sbjct: 502 VDPKTKNCTTLAGTGNASNMIGSSFTDSTFNEPGGLCIGENGQLLYVADTNNHQIKVL 559
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 30/178 (16%)
Query: 97 FTWPRGIAV---GPDNSIVVADSSNHRVQ-VFQSDGTFVGKFG---------SMGNKAG- 142
F P G+++ GP + + VADS + V+ V DG G + G+ G
Sbjct: 409 FAQPSGLSLASEGPWSCLFVADSESSTVRTVSLKDGAVKHLVGGERDPMNLFAFGDVDGV 468
Query: 143 ----QLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197
+L+HP + N + V+DS NH++++ D + + T + G+ N G
Sbjct: 469 GINARLQHPLGVTWDQKRNLLYVADSYNHKIKVVDPKTK----NCTTLAGTGNASNMIGS 524
Query: 198 ------LEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFP 248
P + + N + V+D+NNH++++ D+ + ++ F SE + P
Sbjct: 525 SFTDSTFNEPGGLCIGENGQLLYVADTNNHQIKVLDLETKTVSVFPVFRSENAVVDGP 582
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 26/171 (15%)
Query: 87 DLKTNCVFLAFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMG----NKA 141
+L+ +C WP I +GP N + H+ ++F + + G NK
Sbjct: 156 ELEVSC------WPTLIILGPRGNMLFSLIGEGHKEKLFLYTSIALKYYKDRGQIRANKI 209
Query: 142 G-----------QLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRV-FQSDGTFVGKF 188
G L P I V + +NR++++D+ +HR+ + NG++ + G G+
Sbjct: 210 GIKLYKDSLPPSPLLFPGKITVDHVSNRLVIADTGHHRILVVWKNGQIQYSIGGPNPGRK 269
Query: 189 GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG 239
+ +++ P +A+ N N + V+D+ NH ++ D+ ++++ G
Sbjct: 270 DGIFSES-SFNSPQGVAIMN-NIIYVADTENHLIRKIDLEAEMVSTVAGIG 318
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 26/108 (24%)
Query: 45 IGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-------- 96
I +R P TW + N + VADS NH+++V P NC LA
Sbjct: 470 INARLQHPLGVTWDQK-----RNLLYVADSYNHKIKVVDPK---TKNCTTLAGTGNASNM 521
Query: 97 ---------FTWPRGIAVGPDNSIV-VADSSNHRVQVFQSDGTFVGKF 134
F P G+ +G + ++ VAD++NH+++V + V F
Sbjct: 522 IGSSFTDSTFNEPGGLCIGENGQLLYVADTNNHQIKVLDLETKTVSVF 569
>sp|P74442|Y143_SYNY3 Uncharacterized WD repeat-containing protein slr0143
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0143 PE=4 SV=1
Length = 1191
Score = 40.0 bits (92), Expect = 0.024, Method: Composition-based stats.
Identities = 58/275 (21%), Positives = 113/275 (41%), Gaps = 64/275 (23%)
Query: 103 IAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
+A+ +++ + S + V ++ G F+ +F G + + S ++ +
Sbjct: 566 VAISSHKNLIASASRDGTVHLWTPQGEFLREF------TGHTGSIYRVDFSPNGKIFATA 619
Query: 163 SNNHRVQIFDVNGRVFQS-----DGTFVGKFGSMG--------NKAGQLEH--------- 200
+ V+I+D++G + Q+ D + F G ++ +L H
Sbjct: 620 GQDQTVKIWDLDGNLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLAV 679
Query: 201 --PHYIAVSNTN-----RVIVSDSNNHRVQIFDVNGRVITSFG-SEGSEEGQLKFPRG-- 250
H +V + + +VS + +++++D++G +I FG E + G P G
Sbjct: 680 LGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDLDGNLIRQFGLPEVAFFGVNWHPNGNL 739
Query: 251 --VAVDD--------QGYISVGDSGNNRIQ---IFTPDGQFLRAFGCWGS---------- 287
VA DD QG I SG++ +FTPDG+ L + GS
Sbjct: 740 LAVAADDGTVRLWTPQGEIKATLSGHDEFVTRVVFTPDGKQLFSSSSNGSVIHWSTSGKM 799
Query: 288 ---GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G + + G+A+ SNG +L EN+ ++V+
Sbjct: 800 LKKYQGYPEAIFGLALASNGALLAIGAENNLVKVW 834
>sp|P0CG21|NHLC4_HUMAN NHL-repeat-containing protein 4 OS=Homo sapiens GN=NHLRC4 PE=2 SV=1
Length = 123
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVA 114
F P GI + +++VAD +V + FP V P G+A P ++VA
Sbjct: 48 FGCPAGICSNSEGNVIVADEQRRQVTL-FPRAGPPICLVSEGLGQPLGVACAPQGQLLVA 106
Query: 115 DSSNHRVQVFQ 125
D+ ++ ++V+Q
Sbjct: 107 DAKDNSIKVYQ 117
>sp|C4YFX2|TUP1_CANAW Transcriptional repressor TUP1 OS=Candida albicans (strain WO-1)
GN=TUP1 PE=4 SV=1
Length = 511
Score = 38.1 bits (87), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 65 PDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGI---AVGPDNSIVVADSSNHRV 121
PD +V+ S + V++ +DL+T+ L + G+ AV PD ++ A S + V
Sbjct: 306 PDGDRLVSGSGDRSVRI----WDLRTSQCSLTLSIEDGVTTVAVSPDGKLIAAGSLDRTV 361
Query: 122 QVFQSDGTFVGKFGSMGNK--AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ 179
+V+ S F+ + GN+ G + + +A SN I S S + V+++ + G+
Sbjct: 362 RVWDSTTGFLVERLDSGNENGNGHEDSVYSVAFSNNGEQIASGSLDRTVKLWHLEGK--- 418
Query: 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 226
SD + +G+K L + + N I+S S + V +D
Sbjct: 419 SDKKSTCEVTYIGHKDFVLS----VCCTPDNEYILSGSKDRGVIFWD 461
>sp|P0CY34|TUP1_CANAL Transcriptional repressor TUP1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=TUP1 PE=1 SV=1
Length = 512
Score = 38.1 bits (87), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 65 PDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGI---AVGPDNSIVVADSSNHRV 121
PD +V+ S + V++ +DL+T+ L + G+ AV PD ++ A S + V
Sbjct: 307 PDGDRLVSGSGDRSVRI----WDLRTSQCSLTLSIEDGVTTVAVSPDGKLIAAGSLDRTV 362
Query: 122 QVFQSDGTFVGKFGSMGNK--AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ 179
+V+ S F+ + GN+ G + + +A SN I S S + V+++ + G+
Sbjct: 363 RVWDSTTGFLVERLDSGNENGNGHEDSVYSVAFSNNGEQIASGSLDRTVKLWHLEGK--- 419
Query: 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 226
SD + +G+K L + + N I+S S + V +D
Sbjct: 420 SDKKSTCEVTYIGHKDFVLS----VCCTPDNEYILSGSKDRGVIFWD 462
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,265,136
Number of Sequences: 539616
Number of extensions: 5335803
Number of successful extensions: 10555
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 9788
Number of HSP's gapped (non-prelim): 313
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)