Query psy13998
Match_columns 319
No_of_seqs 412 out of 2268
Neff 12.1
Searched_HMMs 29240
Date Fri Aug 16 16:53:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 6.3E-34 2.1E-38 227.0 27.3 273 13-319 22-317 (321)
2 1vyh_C Platelet-activating fac 100.0 2E-33 6.8E-38 231.7 25.9 265 21-319 108-407 (410)
3 2ymu_A WD-40 repeat protein; u 100.0 4.3E-33 1.5E-37 240.0 27.3 263 21-319 303-576 (577)
4 4gqb_B Methylosome protein 50; 100.0 1.2E-32 3.9E-37 221.3 24.7 265 21-319 30-327 (344)
5 1got_B GT-beta; complex (GTP-b 100.0 2.5E-32 8.5E-37 219.8 25.8 266 21-319 55-339 (340)
6 2pbi_B Guanine nucleotide-bind 100.0 1.6E-31 5.4E-36 216.1 29.5 267 21-319 64-353 (354)
7 4g56_B MGC81050 protein; prote 100.0 4.9E-32 1.7E-36 219.3 24.4 265 21-319 42-339 (357)
8 2ymu_A WD-40 repeat protein; u 100.0 9.9E-32 3.4E-36 231.5 27.5 264 21-319 262-535 (577)
9 3iz6_a 40S ribosomal protein R 100.0 7.8E-31 2.7E-35 214.2 26.9 281 21-319 66-371 (380)
10 1q7f_A NHL, brain tumor CG1071 100.0 3.2E-29 1.1E-33 196.9 33.2 250 40-319 14-276 (286)
11 2ynn_A Coatomer subunit beta'; 100.0 2.9E-30 9.9E-35 204.5 27.2 263 21-316 13-296 (304)
12 3frx_A Guanine nucleotide-bind 100.0 3.3E-30 1.1E-34 205.5 27.1 269 21-319 17-313 (319)
13 2ynn_A Coatomer subunit beta'; 100.0 2.3E-30 7.8E-35 205.1 25.7 236 52-319 10-255 (304)
14 3ow8_A WD repeat-containing pr 100.0 1.1E-29 3.6E-34 202.6 29.7 235 51-319 28-275 (321)
15 1erj_A Transcriptional repress 100.0 4.1E-30 1.4E-34 210.9 28.0 269 21-319 64-385 (393)
16 4ery_A WD repeat-containing pr 100.0 8.6E-30 2.9E-34 202.7 28.1 266 21-319 23-308 (312)
17 1vyh_C Platelet-activating fac 100.0 5.2E-30 1.8E-34 211.3 27.4 234 52-319 105-365 (410)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-30 6.6E-35 209.1 22.6 271 23-319 18-331 (345)
19 2xzm_R RACK1; ribosome, transl 100.0 1.6E-29 5.4E-34 203.7 25.1 271 21-319 21-336 (343)
20 1gxr_A ESG1, transducin-like e 100.0 5.8E-29 2E-33 199.8 28.4 262 21-319 51-333 (337)
21 1got_B GT-beta; complex (GTP-b 100.0 1.4E-28 4.7E-33 198.0 30.1 236 51-319 51-297 (340)
22 1nr0_A Actin interacting prote 100.0 1.7E-29 5.8E-34 218.5 26.0 275 21-319 18-351 (611)
23 3fvz_A Peptidyl-glycine alpha- 100.0 1.9E-28 6.4E-33 196.1 29.2 255 47-319 15-318 (329)
24 1gxr_A ESG1, transducin-like e 100.0 7.6E-28 2.6E-32 193.3 27.8 263 21-319 9-292 (337)
25 1nr0_A Actin interacting prote 100.0 1.6E-28 5.4E-33 212.5 25.4 292 6-319 42-393 (611)
26 3dm0_A Maltose-binding peripla 100.0 4.7E-28 1.6E-32 212.8 28.6 273 21-319 382-689 (694)
27 2pm9_A Protein WEB1, protein t 100.0 8.3E-29 2.8E-33 204.8 22.5 294 5-319 47-410 (416)
28 2pm9_A Protein WEB1, protein t 100.0 3E-28 1E-32 201.4 24.6 274 21-319 12-333 (416)
29 4ery_A WD repeat-containing pr 100.0 3.7E-27 1.3E-31 187.5 29.9 235 52-319 20-264 (312)
30 4aow_A Guanine nucleotide-bind 100.0 1.5E-27 5.1E-32 191.9 27.4 280 12-319 27-333 (340)
31 4e54_B DNA damage-binding prot 100.0 4.4E-28 1.5E-32 201.5 25.0 273 22-319 120-426 (435)
32 3frx_A Guanine nucleotide-bind 100.0 1.2E-27 4.1E-32 190.7 26.5 234 49-319 11-263 (319)
33 2pbi_B Guanine nucleotide-bind 100.0 1.5E-27 5.1E-32 192.8 27.3 237 51-319 60-311 (354)
34 2hes_X YDR267CP; beta-propelle 100.0 1.9E-28 6.6E-33 196.2 21.9 266 21-319 14-324 (330)
35 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.1E-28 2.4E-32 194.1 25.3 238 52-319 12-279 (345)
36 3zwl_B Eukaryotic translation 100.0 1.6E-27 5.4E-32 193.8 26.1 271 21-319 32-342 (369)
37 1r5m_A SIR4-interacting protei 100.0 1.4E-27 4.7E-32 197.9 25.2 269 21-319 45-421 (425)
38 1erj_A Transcriptional repress 100.0 1.1E-26 3.8E-31 190.5 30.0 237 53-319 62-337 (393)
39 2xzm_R RACK1; ribosome, transl 100.0 2.7E-27 9.1E-32 190.7 25.8 237 49-319 15-281 (343)
40 4gqb_B Methylosome protein 50; 100.0 1.5E-27 5.2E-32 191.5 23.3 236 54-319 29-285 (344)
41 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-27 6.5E-32 193.7 23.7 278 20-319 7-357 (372)
42 3ei3_B DNA damage-binding prot 100.0 5.2E-28 1.8E-32 197.9 20.3 272 21-319 73-378 (383)
43 3iz6_a 40S ribosomal protein R 100.0 4.6E-27 1.6E-31 191.9 25.5 252 51-319 62-325 (380)
44 2pm7_B Protein transport prote 100.0 6E-27 2.1E-31 184.8 24.8 239 52-319 6-281 (297)
45 4h5i_A Guanine nucleotide-exch 100.0 8E-28 2.7E-32 195.1 19.8 262 23-319 16-339 (365)
46 3vl1_A 26S proteasome regulato 100.0 3.3E-27 1.1E-31 195.5 23.9 270 23-319 58-361 (420)
47 1sq9_A Antiviral protein SKI8; 100.0 1.4E-27 4.8E-32 196.2 21.5 283 21-319 16-391 (397)
48 4g56_B MGC81050 protein; prote 100.0 1.8E-27 6.1E-32 192.5 19.8 239 52-319 39-297 (357)
49 3bg1_A Protein SEC13 homolog; 100.0 3.4E-27 1.2E-31 187.8 20.7 238 51-319 9-289 (316)
50 3gre_A Serine/threonine-protei 100.0 4.1E-27 1.4E-31 196.0 20.0 288 12-319 51-436 (437)
51 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-25 5.3E-30 182.4 28.3 237 54-319 7-270 (372)
52 3k26_A Polycomb protein EED; W 100.0 2E-26 6.9E-31 187.1 23.0 278 21-319 18-362 (366)
53 2hes_X YDR267CP; beta-propelle 100.0 7.6E-26 2.6E-30 181.2 24.9 236 52-319 11-276 (330)
54 4aez_A CDC20, WD repeat-contai 100.0 3.1E-25 1E-29 182.6 29.1 252 33-319 103-376 (401)
55 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-25 7E-30 179.8 27.5 246 52-319 8-333 (351)
56 1rwi_B Serine/threonine-protei 100.0 1.9E-25 6.6E-30 173.8 26.4 231 57-319 25-260 (270)
57 1r5m_A SIR4-interacting protei 100.0 2.4E-25 8.3E-30 184.3 28.1 243 54-319 44-357 (425)
58 3dwl_C Actin-related protein 2 99.9 2.7E-27 9.2E-32 193.3 15.2 276 21-319 11-375 (377)
59 3odt_A Protein DOA1; ubiquitin 99.9 6.4E-26 2.2E-30 180.2 22.7 257 21-319 18-292 (313)
60 3vl1_A 26S proteasome regulato 99.9 1.6E-25 5.6E-30 185.3 26.0 291 7-319 82-415 (420)
61 4gga_A P55CDC, cell division c 99.9 2.2E-25 7.5E-30 184.5 26.5 260 25-319 109-391 (420)
62 4a11_B DNA excision repair pro 99.9 1E-25 3.5E-30 185.7 24.1 276 21-319 43-361 (408)
63 3jrp_A Fusion protein of prote 99.9 3.2E-25 1.1E-29 180.9 26.2 238 52-319 8-283 (379)
64 3dw8_B Serine/threonine-protei 99.9 1.8E-25 6.3E-30 186.5 25.2 290 21-319 28-442 (447)
65 3i2n_A WD repeat-containing pr 99.9 1.4E-26 4.8E-31 187.5 17.3 273 21-319 18-349 (357)
66 4ggc_A P55CDC, cell division c 99.9 4.3E-25 1.5E-29 175.9 25.2 264 24-319 28-311 (318)
67 2j04_A TAU60, YPL007P, hypothe 99.9 2.6E-26 8.8E-31 189.8 18.3 266 21-319 15-293 (588)
68 3dwl_C Actin-related protein 2 99.9 2E-26 6.7E-31 188.2 17.3 232 56-318 12-277 (377)
69 3dm0_A Maltose-binding peripla 99.9 2.5E-25 8.6E-30 195.4 25.4 237 50-319 377-628 (694)
70 3mkq_A Coatomer beta'-subunit; 99.9 2.5E-25 8.6E-30 199.0 25.7 264 21-318 13-297 (814)
71 3sfz_A APAF-1, apoptotic pepti 99.9 4E-25 1.4E-29 206.1 27.8 271 21-319 615-909 (1249)
72 3mkq_A Coatomer beta'-subunit; 99.9 9E-25 3.1E-29 195.5 26.3 236 52-319 10-255 (814)
73 3ei3_B DNA damage-binding prot 99.9 6.2E-25 2.1E-29 179.7 23.2 239 52-319 70-335 (383)
74 3zwl_B Eukaryotic translation 99.9 6E-24 2.1E-28 172.7 28.5 235 52-314 29-281 (369)
75 1sq9_A Antiviral protein SKI8; 99.9 1.2E-24 4E-29 178.8 23.1 250 51-319 12-318 (397)
76 3gre_A Serine/threonine-protei 99.9 1.5E-24 5.1E-29 180.5 23.6 248 52-319 60-355 (437)
77 2j04_B YDR362CP, TAU91; beta p 99.9 1.3E-25 4.5E-30 189.2 17.2 272 21-319 133-513 (524)
78 4e54_B DNA damage-binding prot 99.9 1.1E-24 3.8E-29 181.0 22.3 235 53-310 117-362 (435)
79 1q7f_A NHL, brain tumor CG1071 99.9 1.2E-23 4.2E-28 165.0 27.0 204 96-319 28-234 (286)
80 2xyi_A Probable histone-bindin 99.9 4.1E-24 1.4E-28 177.4 25.4 239 53-319 126-406 (430)
81 4aow_A Guanine nucleotide-bind 99.9 5.8E-24 2E-28 171.0 25.6 236 49-319 32-282 (340)
82 3dw8_B Serine/threonine-protei 99.9 6.2E-24 2.1E-28 177.2 26.4 249 54-319 27-369 (447)
83 3sfz_A APAF-1, apoptotic pepti 99.9 2.6E-24 8.8E-29 200.6 25.6 293 5-319 639-1030(1249)
84 2j04_B YDR362CP, TAU91; beta p 99.9 3.1E-25 1.1E-29 186.9 17.4 227 65-319 171-424 (524)
85 3jro_A Fusion protein of prote 99.9 2.9E-24 9.7E-29 190.0 23.7 243 51-319 5-281 (753)
86 3hrp_A Uncharacterized protein 99.9 4.4E-23 1.5E-27 169.1 29.1 251 54-319 129-406 (409)
87 3i2n_A WD repeat-containing pr 99.9 2.2E-24 7.4E-29 174.6 20.8 243 53-319 16-287 (357)
88 1pgu_A Actin interacting prote 99.9 1.2E-23 4E-28 182.4 26.8 269 21-319 18-324 (615)
89 3bws_A Protein LP49; two-domai 99.9 2E-23 6.9E-28 173.5 27.0 260 22-319 123-428 (433)
90 1l0q_A Surface layer protein; 99.9 6.4E-23 2.2E-27 168.2 29.6 226 56-319 32-271 (391)
91 2oaj_A Protein SNI1; WD40 repe 99.9 5.7E-24 1.9E-28 190.8 25.0 123 5-132 81-247 (902)
92 1yfq_A Cell cycle arrest prote 99.9 2.6E-24 8.7E-29 173.2 20.6 242 52-319 8-278 (342)
93 3fvz_A Peptidyl-glycine alpha- 99.9 8E-24 2.7E-28 169.3 22.9 207 53-276 88-322 (329)
94 3mmy_A MRNA export factor; mRN 99.9 7.2E-24 2.5E-28 172.2 22.6 250 50-316 34-339 (368)
95 4aez_A CDC20, WD repeat-contai 99.9 8.2E-23 2.8E-27 168.1 29.1 224 58-319 96-332 (401)
96 3odt_A Protein DOA1; ubiquitin 99.9 2.7E-23 9.2E-28 165.1 25.1 227 52-319 15-251 (313)
97 3k26_A Polycomb protein EED; W 99.9 5.7E-24 2E-28 172.7 21.5 241 52-319 15-314 (366)
98 2qc5_A Streptogramin B lactona 99.9 1.8E-21 6.1E-26 153.7 34.5 235 53-319 17-256 (300)
99 3v7d_B Cell division control p 99.9 1.6E-23 5.6E-28 175.6 23.3 276 5-319 144-459 (464)
100 2z2n_A Virginiamycin B lyase; 99.9 2.6E-21 9.1E-26 152.6 34.7 235 53-319 12-251 (299)
101 1yfq_A Cell cycle arrest prote 99.9 3E-24 1E-28 172.8 18.0 263 21-315 11-315 (342)
102 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.6E-23 1.2E-27 172.7 23.7 240 54-319 101-387 (450)
103 3v7d_B Cell division control p 99.9 8.4E-23 2.9E-27 171.3 25.9 256 29-319 128-417 (464)
104 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.3E-23 2.5E-27 170.9 25.4 241 56-319 5-335 (450)
105 1pgu_A Actin interacting prote 99.9 1.1E-22 3.6E-27 176.5 26.8 234 52-319 15-279 (615)
106 2z2n_A Virginiamycin B lyase; 99.9 4.2E-21 1.4E-25 151.5 33.5 264 22-317 15-290 (299)
107 2qc5_A Streptogramin B lactona 99.9 5.3E-21 1.8E-25 150.9 33.3 230 55-318 61-295 (300)
108 3vgz_A Uncharacterized protein 99.9 2.6E-21 8.8E-26 156.3 31.3 257 23-312 42-334 (353)
109 4h5i_A Guanine nucleotide-exch 99.9 1.2E-22 4.1E-27 164.7 23.2 198 56-274 134-341 (365)
110 2aq5_A Coronin-1A; WD40 repeat 99.9 1.7E-22 5.7E-27 166.3 24.3 238 52-319 78-338 (402)
111 2aq5_A Coronin-1A; WD40 repeat 99.9 2.6E-22 8.8E-27 165.2 25.3 232 58-319 37-295 (402)
112 3lrv_A PRE-mRNA-splicing facto 99.9 6.5E-23 2.2E-27 165.1 21.2 224 63-319 44-288 (343)
113 2pm7_B Protein transport prote 99.9 1.4E-23 4.7E-28 165.6 16.6 233 21-274 9-283 (297)
114 3hfq_A Uncharacterized protein 99.9 1.4E-21 4.7E-26 157.7 28.5 247 55-319 39-313 (347)
115 2j04_A TAU60, YPL007P, hypothe 99.9 3.3E-23 1.1E-27 171.4 19.1 258 20-311 51-349 (588)
116 3bws_A Protein LP49; two-domai 99.9 9.9E-22 3.4E-26 163.3 27.5 227 56-319 123-386 (433)
117 3vu4_A KMHSV2; beta-propeller 99.9 1E-21 3.4E-26 158.8 26.5 227 52-319 16-267 (355)
118 1p22_A F-BOX/WD-repeat protein 99.9 2.1E-22 7.2E-27 167.4 23.1 244 30-319 140-410 (435)
119 2dg1_A DRP35, lactonase; beta 99.9 2E-21 6.7E-26 155.9 27.0 269 23-312 7-300 (333)
120 3e5z_A Putative gluconolactona 99.9 6.7E-21 2.3E-25 150.2 29.2 226 54-317 26-281 (296)
121 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.8E-22 1.6E-26 165.8 23.5 276 6-319 142-438 (445)
122 3vu4_A KMHSV2; beta-propeller 99.9 1.7E-21 5.7E-26 157.5 25.6 270 21-319 19-332 (355)
123 3bg1_A Protein SEC13 homolog; 99.9 2.8E-23 9.7E-28 165.2 14.9 232 21-274 13-291 (316)
124 3lrv_A PRE-mRNA-splicing facto 99.9 6.9E-22 2.4E-26 159.1 22.8 225 27-274 42-290 (343)
125 3u4y_A Uncharacterized protein 99.9 2.8E-21 9.6E-26 154.8 26.1 237 56-319 41-300 (331)
126 3vgz_A Uncharacterized protein 99.9 2.8E-20 9.7E-25 150.2 30.8 238 56-319 41-299 (353)
127 3f3f_A Nucleoporin SEH1; struc 99.9 4.1E-22 1.4E-26 160.5 19.6 242 21-282 11-344 (351)
128 2oaj_A Protein SNI1; WD40 repe 99.9 2.6E-21 8.9E-26 173.6 26.6 246 53-313 15-297 (902)
129 3no2_A Uncharacterized protein 99.9 1.8E-20 6.1E-25 145.5 27.7 222 65-311 3-231 (276)
130 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.8E-21 1.6E-25 159.7 25.9 249 28-319 124-387 (445)
131 3jrp_A Fusion protein of prote 99.9 4.8E-22 1.6E-26 162.1 19.2 232 21-274 11-285 (379)
132 4hw6_A Hypothetical protein, I 99.9 4.6E-21 1.6E-25 157.8 24.9 245 53-319 136-429 (433)
133 1l0q_A Surface layer protein; 99.9 3.1E-20 1E-24 152.2 29.1 215 67-319 2-229 (391)
134 1pjx_A Dfpase, DIISOPROPYLFLUO 99.9 2.4E-20 8.1E-25 148.3 26.8 237 53-319 15-295 (314)
135 2w18_A PALB2, fancn, partner a 99.9 6.8E-21 2.3E-25 148.3 22.7 189 107-319 143-353 (356)
136 4gq1_A NUP37; propeller, trans 99.9 1.8E-21 6.1E-26 159.5 19.8 239 62-316 96-383 (393)
137 4gga_A P55CDC, cell division c 99.9 1.8E-21 6.3E-26 161.0 20.0 240 4-274 126-393 (420)
138 2xyi_A Probable histone-bindin 99.9 2E-21 6.8E-26 161.2 20.2 229 21-276 128-410 (430)
139 3tc9_A Hypothetical hydrolase; 99.9 2.2E-20 7.5E-25 153.8 26.0 244 53-319 134-426 (430)
140 1p22_A F-BOX/WD-repeat protein 99.9 1.8E-20 6.2E-25 155.7 25.9 221 56-319 134-361 (435)
141 1rwi_B Serine/threonine-protei 99.9 2E-20 6.8E-25 145.4 22.9 226 23-275 25-263 (270)
142 1nir_A Nitrite reductase; hemo 99.9 6.5E-20 2.2E-24 155.7 26.6 266 27-319 143-454 (543)
143 1ri6_A Putative isomerase YBHE 99.9 3.7E-19 1.3E-23 143.0 28.8 239 55-319 37-304 (343)
144 3scy_A Hypothetical bacterial 99.9 4.2E-19 1.4E-23 143.9 28.7 253 54-319 48-333 (361)
145 3kya_A Putative phosphatase; s 99.9 2.7E-19 9.2E-24 147.0 27.1 251 53-319 136-471 (496)
146 2fp8_A Strictosidine synthase; 99.9 1.5E-19 5.2E-24 144.1 24.7 238 53-319 16-309 (322)
147 3jro_A Fusion protein of prote 99.9 3.9E-21 1.3E-25 170.0 16.7 237 21-275 9-284 (753)
148 3g4e_A Regucalcin; six bladed 99.9 3.6E-19 1.2E-23 140.2 25.8 229 55-313 12-263 (297)
149 2w18_A PALB2, fancn, partner a 99.9 2.9E-20 1E-24 144.7 18.9 214 23-274 113-355 (356)
150 2qe8_A Uncharacterized protein 99.9 1.2E-19 4.3E-24 145.7 23.0 250 56-316 17-314 (343)
151 4a11_B DNA excision repair pro 99.9 1.1E-19 3.7E-24 149.6 23.0 204 52-278 40-279 (408)
152 1npe_A Nidogen, entactin; glyc 99.9 1.8E-18 6.1E-23 134.1 28.2 217 56-305 36-263 (267)
153 1nir_A Nitrite reductase; hemo 99.9 4E-20 1.4E-24 157.0 20.2 286 7-319 163-510 (543)
154 4ggc_A P55CDC, cell division c 99.9 2E-20 6.9E-25 148.8 16.5 245 5-274 47-313 (318)
155 3u4y_A Uncharacterized protein 99.9 4.8E-19 1.7E-23 141.8 24.3 223 62-319 4-248 (331)
156 3hrp_A Uncharacterized protein 99.9 4.8E-19 1.6E-23 145.2 24.6 245 24-274 133-408 (409)
157 3dsm_A Uncharacterized protein 99.9 1.3E-18 4.3E-23 138.9 26.5 232 56-319 44-298 (328)
158 3hfq_A Uncharacterized protein 99.8 1.8E-18 6.3E-23 139.3 26.9 241 22-279 40-323 (347)
159 3no2_A Uncharacterized protein 99.8 2E-18 6.8E-23 133.9 25.9 219 56-299 37-272 (276)
160 1jmx_B Amine dehydrogenase; ox 99.8 6.2E-19 2.1E-23 142.1 23.6 235 59-319 3-321 (349)
161 3mmy_A MRNA export factor; mRN 99.8 5.3E-20 1.8E-24 149.3 15.8 250 11-273 27-343 (368)
162 3v64_C Agrin; beta propeller, 99.8 9.1E-18 3.1E-22 134.7 27.9 226 59-318 37-270 (349)
163 1ri6_A Putative isomerase YBHE 99.8 7.4E-18 2.5E-22 135.4 26.2 262 21-304 37-334 (343)
164 1npe_A Nidogen, entactin; glyc 99.8 1.4E-17 4.7E-22 129.1 26.6 194 97-319 35-234 (267)
165 2dg1_A DRP35, lactonase; beta 99.8 1.4E-18 4.9E-23 139.2 21.7 234 58-319 8-259 (333)
166 3v65_B Low-density lipoprotein 99.8 1.5E-17 5E-22 135.4 27.2 225 60-318 81-313 (386)
167 3v64_C Agrin; beta propeller, 99.8 8.7E-18 3E-22 134.8 25.2 214 55-301 72-295 (349)
168 3dr2_A Exported gluconolactona 99.8 1.8E-17 6.2E-22 131.0 26.6 227 54-311 43-296 (305)
169 3v65_B Low-density lipoprotein 99.8 1E-17 3.4E-22 136.3 24.9 214 55-301 115-338 (386)
170 4gq1_A NUP37; propeller, trans 99.8 6.3E-19 2.2E-23 144.4 17.7 238 25-273 93-386 (393)
171 1pby_B Quinohemoprotein amine 99.8 3.4E-17 1.2E-21 131.2 27.3 223 68-319 2-306 (337)
172 2p4o_A Hypothetical protein; p 99.8 4E-17 1.4E-21 129.0 27.2 230 56-312 32-278 (306)
173 1ijq_A LDL receptor, low-densi 99.8 2.6E-17 9E-22 130.4 26.0 203 55-282 29-245 (316)
174 3dsm_A Uncharacterized protein 99.8 1.2E-17 4.2E-22 133.2 24.3 211 55-301 83-320 (328)
175 3e5z_A Putative gluconolactona 99.8 1.2E-17 4.2E-22 131.5 23.9 193 97-319 27-242 (296)
176 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.2E-17 4.2E-22 137.6 24.5 215 54-304 177-409 (415)
177 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.6E-17 1.2E-21 132.7 26.9 247 55-319 39-337 (365)
178 1ijq_A LDL receptor, low-densi 99.8 1.1E-16 3.8E-21 126.7 27.8 212 77-318 10-233 (316)
179 3sov_A LRP-6, low-density lipo 99.8 3.7E-17 1.3E-21 129.1 23.3 201 55-282 34-245 (318)
180 4hw6_A Hypothetical protein, I 99.8 1E-16 3.5E-21 132.0 26.2 218 54-275 180-432 (433)
181 2ecf_A Dipeptidyl peptidase IV 99.8 1.3E-17 4.6E-22 147.7 22.4 273 21-319 36-409 (741)
182 2hqs_A Protein TOLB; TOLB, PAL 99.8 5.5E-17 1.9E-21 133.7 24.4 206 77-319 159-383 (415)
183 3scy_A Hypothetical bacterial 99.8 3.6E-16 1.2E-20 126.6 28.7 230 75-319 25-287 (361)
184 3p5b_L Low density lipoprotein 99.8 1E-16 3.5E-21 130.8 25.2 204 54-282 110-327 (400)
185 3sov_A LRP-6, low-density lipo 99.8 1.5E-16 5.1E-21 125.7 25.3 215 69-318 7-233 (318)
186 3tc9_A Hypothetical hydrolase; 99.8 8.1E-17 2.8E-21 132.6 24.3 218 54-275 177-429 (430)
187 3p5b_L Low density lipoprotein 99.8 2.1E-16 7E-21 129.1 26.4 218 68-318 85-315 (400)
188 1pjx_A Dfpase, DIISOPROPYLFLUO 99.8 7E-17 2.4E-21 128.2 22.3 193 56-275 71-298 (314)
189 2ghs_A AGR_C_1268P; regucalcin 99.8 4.5E-16 1.5E-20 124.1 26.1 226 56-313 49-293 (326)
190 2ecf_A Dipeptidyl peptidase IV 99.8 3.2E-17 1.1E-21 145.2 20.9 240 56-319 37-363 (741)
191 3m0c_C LDL receptor, low-densi 99.8 2.6E-16 8.8E-21 137.8 25.9 216 55-301 423-652 (791)
192 3kya_A Putative phosphatase; s 99.8 2.2E-16 7.4E-21 129.9 22.1 216 54-277 184-476 (496)
193 1xfd_A DIP, dipeptidyl aminope 99.8 1.5E-16 5.2E-21 140.6 23.0 277 22-319 17-389 (723)
194 3m0c_C LDL receptor, low-densi 99.8 1.3E-15 4.5E-20 133.4 28.2 212 76-318 403-627 (791)
195 2ojh_A Uncharacterized protein 99.8 1.5E-16 5E-21 125.0 20.2 225 55-312 41-291 (297)
196 4a0p_A LRP6, LRP-6, low-densit 99.8 1.2E-15 4E-20 131.1 27.1 214 69-318 9-232 (628)
197 1pby_B Quinohemoprotein amine 99.8 8.2E-16 2.8E-20 123.1 24.8 205 57-283 35-318 (337)
198 2z3z_A Dipeptidyl aminopeptida 99.8 3.4E-16 1.2E-20 137.9 24.3 268 22-319 82-431 (706)
199 1jmx_B Amine dehydrogenase; ox 99.7 6.8E-16 2.3E-20 124.3 22.2 228 27-283 5-333 (349)
200 4a0p_A LRP6, LRP-6, low-densit 99.7 1.6E-15 5.6E-20 130.2 25.3 199 55-282 36-244 (628)
201 3s94_A LRP-6, low-density lipo 99.7 2.3E-15 7.8E-20 129.2 25.9 194 96-317 347-545 (619)
202 3s94_A LRP-6, low-density lipo 99.7 1.6E-15 5.3E-20 130.2 24.8 202 54-282 38-250 (619)
203 2fp8_A Strictosidine synthase; 99.7 4E-16 1.4E-20 124.3 19.2 197 56-277 80-314 (322)
204 2z3z_A Dipeptidyl aminopeptida 99.7 1.4E-15 4.8E-20 134.0 24.1 235 56-314 82-378 (706)
205 3o4h_A Acylamino-acid-releasin 99.7 1.7E-16 5.8E-21 136.8 17.1 222 57-319 23-272 (582)
206 3g4e_A Regucalcin; six bladed 99.7 3.7E-15 1.3E-19 117.3 23.0 194 99-319 14-225 (297)
207 1n7d_A LDL receptor, low-densi 99.7 1.9E-16 6.4E-21 138.0 17.0 216 55-301 405-634 (699)
208 1xfd_A DIP, dipeptidyl aminope 99.7 6.6E-16 2.2E-20 136.5 19.2 238 57-314 18-329 (723)
209 2oiz_A Aromatic amine dehydrog 99.7 1.7E-15 5.9E-20 122.3 19.6 275 7-305 35-360 (361)
210 2p4o_A Hypothetical protein; p 99.7 2.5E-14 8.4E-19 113.0 25.7 195 98-319 32-238 (306)
211 2ojh_A Uncharacterized protein 99.7 7.3E-15 2.5E-19 115.2 22.0 205 73-313 18-237 (297)
212 1jof_A Carboxy-CIS,CIS-muconat 99.7 7.7E-15 2.6E-19 119.0 22.3 243 23-281 41-346 (365)
213 2oit_A Nucleoporin 214KDA; NH2 99.7 3E-15 1E-19 123.8 19.6 199 56-274 37-276 (434)
214 1k32_A Tricorn protease; prote 99.7 5.1E-15 1.7E-19 135.8 22.7 219 57-314 246-493 (1045)
215 2ism_A Putative oxidoreductase 99.7 1.4E-14 4.9E-19 116.2 22.3 245 55-312 30-334 (352)
216 3dr2_A Exported gluconolactona 99.7 1.2E-14 4E-19 114.9 21.6 195 97-319 44-263 (305)
217 2qe8_A Uncharacterized protein 99.7 2.2E-15 7.5E-20 121.0 17.6 208 53-273 64-318 (343)
218 3o4h_A Acylamino-acid-releasin 99.7 2.9E-16 1E-20 135.3 13.3 252 21-314 21-303 (582)
219 1n7d_A LDL receptor, low-densi 99.7 7.9E-16 2.7E-20 134.1 15.7 213 76-318 385-609 (699)
220 3pe7_A Oligogalacturonate lyas 99.7 6.7E-15 2.3E-19 120.3 19.8 271 27-319 41-378 (388)
221 3a9g_A Putative uncharacterize 99.7 1.3E-13 4.6E-18 110.5 26.0 238 55-311 28-330 (354)
222 2iwa_A Glutamine cyclotransfer 99.7 2.5E-13 8.4E-18 103.0 24.7 197 99-318 22-232 (266)
223 1k32_A Tricorn protease; prote 99.7 1.2E-14 4.1E-19 133.3 21.1 233 54-319 202-457 (1045)
224 2oiz_A Aromatic amine dehydrog 99.6 9.4E-14 3.2E-18 112.2 23.1 235 57-319 52-330 (361)
225 2oit_A Nucleoporin 214KDA; NH2 99.6 9E-15 3.1E-19 121.0 16.3 199 99-308 38-256 (434)
226 1z68_A Fibroblast activation p 99.6 6E-15 2.1E-19 130.3 16.3 276 25-319 19-387 (719)
227 3qqz_A Putative uncharacterize 99.6 3.1E-12 1.1E-16 96.5 26.9 213 98-319 27-249 (255)
228 2ece_A 462AA long hypothetical 99.6 6.7E-13 2.3E-17 106.9 24.6 228 65-310 93-399 (462)
229 2iwa_A Glutamine cyclotransfer 99.6 1.4E-12 4.7E-17 99.0 23.4 197 56-274 21-235 (266)
230 1qks_A Cytochrome CD1 nitrite 99.6 2.8E-12 9.5E-17 109.0 27.8 230 56-310 197-458 (567)
231 2ghs_A AGR_C_1268P; regucalcin 99.6 1.3E-12 4.4E-17 104.1 24.2 193 99-319 50-256 (326)
232 3c75_H MADH, methylamine dehyd 99.6 1.2E-12 4.1E-17 106.5 24.3 236 65-319 82-398 (426)
233 3sjl_D Methylamine dehydrogena 99.6 1.7E-12 6E-17 103.8 24.3 236 56-319 79-359 (386)
234 1qks_A Cytochrome CD1 nitrite 99.6 3.7E-12 1.3E-16 108.2 27.7 228 64-319 164-417 (567)
235 2p9w_A MAL S 1 allergenic prot 99.6 1.9E-13 6.4E-18 105.7 17.6 210 55-276 12-265 (334)
236 3qqz_A Putative uncharacterize 99.6 2.8E-12 9.6E-17 96.7 23.6 215 51-275 22-252 (255)
237 3sjl_D Methylamine dehydrogena 99.6 9.7E-13 3.3E-17 105.2 22.1 271 9-303 65-384 (386)
238 2ism_A Putative oxidoreductase 99.6 1.3E-12 4.3E-17 104.9 21.3 216 96-318 29-292 (352)
239 2mad_H Methylamine dehydrogena 99.6 2.4E-11 8.2E-16 98.3 28.9 236 64-319 29-346 (373)
240 1z68_A Fibroblast activation p 99.6 8.8E-14 3E-18 122.9 15.9 238 58-318 18-339 (719)
241 2mad_H Methylamine dehydrogena 99.6 1.3E-11 4.6E-16 99.7 27.0 210 56-282 125-357 (373)
242 2p9w_A MAL S 1 allergenic prot 99.5 1.7E-12 5.9E-17 100.3 19.9 215 99-318 14-260 (334)
243 3azo_A Aminopeptidase; POP fam 99.5 2.5E-12 8.6E-17 112.5 23.0 248 54-319 22-319 (662)
244 3das_A Putative oxidoreductase 99.5 1.5E-11 5.2E-16 97.0 24.0 238 54-311 30-326 (347)
245 3a9g_A Putative uncharacterize 99.5 7E-12 2.4E-16 100.5 22.3 208 96-318 27-291 (354)
246 4a5s_A Dipeptidyl peptidase 4 99.5 2.6E-12 9E-17 113.7 21.3 207 58-277 19-296 (740)
247 3c75_H MADH, methylamine dehyd 99.5 1.3E-11 4.5E-16 100.5 23.4 210 56-282 177-409 (426)
248 3azo_A Aminopeptidase; POP fam 99.5 2E-12 6.9E-17 113.1 20.1 235 60-319 81-363 (662)
249 2g8s_A Glucose/sorbosone dehyd 99.5 6E-12 2E-16 101.0 20.3 254 55-317 17-348 (353)
250 3nol_A Glutamine cyclotransfer 99.5 2.6E-11 8.9E-16 90.8 22.0 187 101-311 46-244 (262)
251 3hxj_A Pyrrolo-quinoline quino 99.5 1.3E-10 4.5E-15 92.6 27.1 213 61-318 103-319 (330)
252 3pe7_A Oligogalacturonate lyas 99.5 3.9E-12 1.3E-16 103.9 18.5 221 58-308 38-305 (388)
253 3c5m_A Oligogalacturonate lyas 99.5 4.1E-12 1.4E-16 104.0 18.1 266 24-319 38-378 (396)
254 3nok_A Glutaminyl cyclase; bet 99.5 3.1E-11 1.1E-15 90.4 20.0 186 101-311 58-254 (268)
255 1mda_H Methylamine dehydrogena 99.5 2.4E-11 8E-16 97.4 20.7 236 67-319 32-342 (368)
256 3mbr_X Glutamine cyclotransfer 99.4 2.6E-10 9E-15 84.7 23.6 189 99-311 22-223 (243)
257 1mda_H Methylamine dehydrogena 99.4 4.8E-11 1.6E-15 95.6 18.6 212 57-303 67-367 (368)
258 3hxj_A Pyrrolo-quinoline quino 99.4 2.1E-10 7E-15 91.5 22.4 209 58-312 62-274 (330)
259 3sre_A PON1, serum paraoxonase 99.4 2.4E-10 8E-15 90.7 21.8 193 55-275 49-297 (355)
260 3das_A Putative oxidoreductase 99.4 4E-10 1.4E-14 88.9 22.9 210 96-317 30-286 (347)
261 3nol_A Glutamine cyclotransfer 99.4 2.1E-10 7.3E-15 85.9 20.2 190 58-270 45-250 (262)
262 2gop_A Trilobed protease; beta 99.4 9.9E-11 3.4E-15 94.0 19.3 215 56-319 15-288 (347)
263 3sre_A PON1, serum paraoxonase 99.4 1.8E-10 6.1E-15 91.4 20.1 189 99-311 51-285 (355)
264 3nok_A Glutaminyl cyclase; bet 99.4 3.5E-10 1.2E-14 84.7 20.0 185 58-265 57-255 (268)
265 1cru_A Protein (soluble quinop 99.3 1.5E-09 5E-14 89.9 25.3 152 55-218 26-247 (454)
266 1fwx_A Nitrous oxide reductase 99.3 5.4E-11 1.8E-15 99.3 16.0 227 66-311 100-407 (595)
267 3c5m_A Oligogalacturonate lyas 99.3 4.5E-11 1.5E-15 97.8 14.3 222 55-310 35-300 (396)
268 4a5s_A Dipeptidyl peptidase 4 99.3 2.6E-10 8.8E-15 101.0 19.2 193 100-309 19-276 (740)
269 2bkl_A Prolyl endopeptidase; m 99.3 5.8E-10 2E-14 98.1 20.7 218 57-307 122-377 (695)
270 3mbr_X Glutamine cyclotransfer 99.3 3.8E-09 1.3E-13 78.6 21.8 194 56-272 21-231 (243)
271 2xdw_A Prolyl endopeptidase; a 99.3 2.9E-09 1E-13 93.9 25.1 224 57-305 126-392 (710)
272 2gop_A Trilobed protease; beta 99.3 8E-10 2.7E-14 88.7 19.7 209 56-314 59-321 (347)
273 3v9f_A Two-component system se 99.3 1.7E-08 5.8E-13 90.0 29.6 231 56-311 363-601 (781)
274 2g8s_A Glucose/sorbosone dehyd 99.3 8.2E-10 2.8E-14 88.6 19.1 219 96-318 16-303 (353)
275 4a2l_A BT_4663, two-component 99.3 2.9E-08 9.9E-13 88.7 30.7 233 56-311 357-604 (795)
276 3v9f_A Two-component system se 99.3 7E-09 2.4E-13 92.5 26.6 237 56-316 407-650 (781)
277 4a2l_A BT_4663, two-component 99.2 2.7E-08 9.4E-13 88.9 29.5 234 56-312 406-650 (795)
278 2ece_A 462AA long hypothetical 99.2 2.5E-08 8.4E-13 80.7 23.5 197 56-263 138-399 (462)
279 1fwx_A Nitrous oxide reductase 99.2 7.1E-09 2.4E-13 86.7 20.4 187 108-319 100-357 (595)
280 3q6k_A 43.2 kDa salivary prote 99.1 1.5E-07 5.1E-12 75.0 25.5 245 56-312 26-343 (381)
281 2bkl_A Prolyl endopeptidase; m 99.1 3.4E-09 1.2E-13 93.2 17.6 228 23-276 122-397 (695)
282 1cru_A Protein (soluble quinop 99.1 1.5E-08 5.2E-13 83.8 18.6 159 96-265 25-247 (454)
283 2xdw_A Prolyl endopeptidase; a 99.1 2.2E-08 7.5E-13 88.4 20.3 230 23-277 126-416 (710)
284 1xip_A Nucleoporin NUP159; bet 99.0 3.2E-08 1.1E-12 79.6 16.2 174 55-262 37-230 (388)
285 1yr2_A Prolyl oligopeptidase; 98.9 1.4E-07 4.9E-12 83.6 20.8 218 57-305 164-419 (741)
286 1kb0_A Quinohemoprotein alcoho 98.9 7E-07 2.4E-11 78.0 24.5 163 60-235 123-353 (677)
287 3iuj_A Prolyl endopeptidase; h 98.9 4E-07 1.4E-11 80.0 20.7 219 53-305 126-383 (693)
288 3q6k_A 43.2 kDa salivary prote 98.9 3E-06 1E-10 67.5 23.3 199 53-265 84-343 (381)
289 1xip_A Nucleoporin NUP159; bet 98.9 9.2E-08 3.2E-12 76.9 14.5 173 99-309 39-230 (388)
290 1yiq_A Quinohemoprotein alcoho 98.8 5E-06 1.7E-10 72.9 25.9 78 220-309 455-534 (689)
291 1kb0_A Quinohemoprotein alcoho 98.8 4E-06 1.4E-10 73.3 25.1 190 102-309 247-536 (677)
292 1yr2_A Prolyl oligopeptidase; 98.8 2.8E-07 9.6E-12 81.7 17.7 232 23-282 164-447 (741)
293 1yiq_A Quinohemoprotein alcoho 98.8 3.9E-06 1.3E-10 73.5 24.5 162 61-234 117-344 (689)
294 3amr_A 3-phytase; beta-propell 98.8 2.9E-06 1E-10 66.5 19.5 186 108-319 39-259 (355)
295 1k3i_A Galactose oxidase precu 98.7 3.4E-05 1.2E-09 67.4 27.9 111 58-176 188-324 (656)
296 2hz6_A Endoplasmic reticulum t 98.7 8.3E-09 2.8E-13 83.5 4.2 182 67-282 9-199 (369)
297 3ott_A Two-component system se 98.7 2E-05 6.8E-10 70.1 26.1 235 57-310 325-575 (758)
298 2wg3_C Hedgehog-interacting pr 98.7 4.4E-05 1.5E-09 63.2 25.4 243 54-311 12-354 (463)
299 3iuj_A Prolyl endopeptidase; h 98.6 5.1E-06 1.7E-10 73.1 19.6 226 23-277 130-406 (693)
300 2ad6_A Methanol dehydrogenase 98.6 0.00015 5E-09 62.1 27.7 79 219-310 443-524 (571)
301 3ott_A Two-component system se 98.6 0.00027 9.1E-09 62.9 29.8 237 58-315 193-441 (758)
302 2ad6_A Methanol dehydrogenase 98.6 0.00019 6.4E-09 61.5 27.6 163 61-235 111-342 (571)
303 1w6s_A Methanol dehydrogenase 98.5 0.00018 6E-09 61.8 26.0 166 59-235 109-349 (599)
304 1w6s_A Methanol dehydrogenase 98.5 0.00031 1E-08 60.3 27.2 79 219-309 452-532 (599)
305 1kv9_A Type II quinohemoprotei 98.5 6.4E-05 2.2E-09 65.7 23.4 162 60-234 112-339 (668)
306 1flg_A Protein (quinoprotein e 98.5 0.00032 1.1E-08 60.2 26.2 79 219-309 465-545 (582)
307 3amr_A 3-phytase; beta-propell 98.5 0.00023 8E-09 55.9 22.9 198 67-282 40-271 (355)
308 1tl2_A L10, protein (tachylect 98.4 1.7E-05 5.7E-10 57.6 13.5 150 144-316 40-203 (236)
309 1kv9_A Type II quinohemoprotei 98.4 0.00037 1.2E-08 61.0 24.3 78 220-309 438-517 (668)
310 2hz6_A Endoplasmic reticulum t 98.4 8.3E-08 2.8E-12 77.6 1.2 145 109-282 9-156 (369)
311 3s25_A Hypothetical 7-bladed b 98.3 0.00014 4.7E-09 56.7 19.0 227 40-316 37-286 (302)
312 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.0012 4.1E-08 53.3 25.1 215 66-319 143-374 (376)
313 3s25_A Hypothetical 7-bladed b 98.2 0.00032 1.1E-08 54.7 18.7 197 42-278 90-295 (302)
314 2wg3_C Hedgehog-interacting pr 98.2 0.00028 9.7E-09 58.4 18.0 126 144-277 13-187 (463)
315 3q7m_A Lipoprotein YFGL, BAMB; 98.1 0.002 6.8E-08 52.0 26.4 191 66-282 53-265 (376)
316 1tl2_A L10, protein (tachylect 98.1 1.7E-05 5.9E-10 57.5 8.8 107 199-316 41-156 (236)
317 1k3i_A Galactose oxidase precu 98.1 0.0012 3.9E-08 57.8 21.9 121 101-234 189-328 (656)
318 1flg_A Protein (quinoprotein e 98.1 0.0026 8.9E-08 54.6 23.4 164 60-235 112-362 (582)
319 2xbg_A YCF48-like protein; pho 98.0 0.0039 1.3E-07 49.3 26.1 228 57-317 81-316 (327)
320 2xbg_A YCF48-like protein; pho 97.8 0.0076 2.6E-07 47.6 27.2 223 57-312 37-269 (327)
321 4a9v_A PHOX; hydrolase, beta-p 97.5 0.0033 1.1E-07 52.7 13.7 109 197-310 382-549 (592)
322 2vpj_A Kelch-like protein 12; 97.5 0.023 7.7E-07 44.2 24.3 216 66-313 14-263 (301)
323 2zwa_A Leucine carboxyl methyl 97.5 0.05 1.7E-06 47.9 24.3 230 65-312 396-674 (695)
324 3ii7_A Kelch-like protein 7; p 97.3 0.039 1.3E-06 42.9 25.5 215 67-313 12-257 (306)
325 4a9v_A PHOX; hydrolase, beta-p 97.2 0.011 3.9E-07 49.6 13.4 115 144-263 383-549 (592)
326 1zgk_A Kelch-like ECH-associat 97.1 0.07 2.4E-06 41.6 25.6 217 65-313 23-272 (308)
327 2woz_A Kelch repeat and BTB do 97.0 0.075 2.6E-06 41.6 21.3 213 68-313 17-263 (318)
328 2xn4_A Kelch-like protein 2; s 97.0 0.08 2.8E-06 41.0 25.3 180 108-314 61-262 (302)
329 2xe4_A Oligopeptidase B; hydro 97.0 0.092 3.1E-06 46.7 18.4 110 57-175 175-304 (751)
330 2xe4_A Oligopeptidase B; hydro 96.9 0.14 4.8E-06 45.5 19.3 192 100-318 176-393 (751)
331 3ii7_A Kelch-like protein 7; p 96.8 0.12 3.9E-06 40.2 23.4 189 65-280 54-276 (306)
332 2vpj_A Kelch-like protein 12; 96.7 0.14 4.9E-06 39.6 22.8 188 65-279 61-281 (301)
333 2uvk_A YJHT; unknown function, 96.6 0.2 6.7E-06 39.9 21.6 91 66-165 19-128 (357)
334 4asc_A Kelch repeat and BTB do 96.6 0.18 6.1E-06 39.4 22.9 212 69-313 7-253 (315)
335 2zwa_A Leucine carboxyl methyl 96.5 0.42 1.4E-05 42.1 23.8 193 107-313 396-617 (695)
336 3zwu_A Alkaline phosphatase PH 96.4 0.13 4.3E-06 44.0 14.3 108 197-309 382-548 (592)
337 2uvk_A YJHT; unknown function, 96.4 0.28 9.7E-06 39.0 17.4 48 66-118 65-128 (357)
338 4asc_A Kelch repeat and BTB do 96.2 0.31 1.1E-05 38.0 21.5 193 62-281 41-282 (315)
339 1zgk_A Kelch-like ECH-associat 96.2 0.32 1.1E-05 37.8 22.7 190 66-282 70-293 (308)
340 2xn4_A Kelch-like protein 2; s 96.1 0.36 1.2E-05 37.3 22.8 190 66-282 61-282 (302)
341 3zwu_A Alkaline phosphatase PH 95.9 0.18 6.1E-06 43.1 12.6 115 143-262 382-547 (592)
342 2woz_A Kelch repeat and BTB do 95.6 0.59 2E-05 36.4 19.9 189 63-278 53-289 (318)
343 3sbq_A Nitrous-oxide reductase 95.6 0.013 4.5E-07 48.9 4.6 77 145-228 323-407 (638)
344 2be1_A Serine/threonine-protei 95.3 0.12 3.9E-06 40.9 8.9 73 108-189 55-138 (339)
345 2be1_A Serine/threonine-protei 95.2 0.38 1.3E-05 37.9 11.5 114 110-237 11-139 (339)
346 3sbq_A Nitrous-oxide reductase 95.2 0.025 8.4E-07 47.4 4.9 67 56-126 323-406 (638)
347 3b7f_A Glycosyl hydrolase, BNR 94.1 1.9 6.6E-05 34.7 22.1 192 56-263 55-297 (394)
348 3b7f_A Glycosyl hydrolase, BNR 90.0 6.6 0.00022 31.6 18.8 203 99-310 56-297 (394)
349 3pbp_A Nucleoporin NUP82; beta 82.7 18 0.00063 29.6 17.1 125 99-226 67-209 (452)
350 3s9j_A Member of DUF4221 famil 82.4 12 0.0004 30.0 9.4 77 208-284 36-118 (369)
351 3s9j_A Member of DUF4221 famil 81.0 17 0.00057 29.1 9.8 77 154-236 36-117 (369)
352 2xzh_A Clathrin heavy chain 1; 73.9 31 0.0011 27.2 25.1 203 60-281 71-296 (365)
353 3elq_A Arylsulfate sulfotransf 71.9 46 0.0016 28.4 23.3 127 105-238 214-394 (571)
354 1xi4_A Clathrin heavy chain; a 70.2 84 0.0029 30.7 17.2 107 60-175 70-188 (1630)
355 3pbp_A Nucleoporin NUP82; beta 68.5 48 0.0016 27.2 17.4 127 145-273 66-209 (452)
356 1sqj_A OXG-RCBH, oligoxylogluc 57.7 1.1E+02 0.0037 27.5 24.4 214 56-282 15-275 (789)
357 3a0f_A Xyloglucanase; beta-pro 57.5 1.1E+02 0.0036 27.4 24.1 205 99-310 22-263 (763)
358 1bpo_A Protein (clathrin); cla 57.2 83 0.0028 26.1 25.6 203 60-281 70-295 (494)
359 1sqj_A OXG-RCBH, oligoxylogluc 53.8 1.2E+02 0.0043 27.1 23.2 205 99-309 16-247 (789)
360 3ei3_A DNA damage-binding prot 53.5 1.5E+02 0.0053 28.1 20.9 214 71-318 709-995 (1158)
361 3elq_A Arylsulfate sulfotransf 49.7 1.2E+02 0.0042 25.9 26.1 30 145-175 355-385 (571)
362 4gq2_M Nucleoporin NUP120; bet 43.3 2E+02 0.0069 26.5 13.4 36 101-136 239-275 (950)
363 2cn3_A Xyloglucanase, beta-1,4 37.6 2.2E+02 0.0075 25.3 21.4 64 99-163 24-92 (737)
364 2xzh_A Clathrin heavy chain 1; 36.9 1.6E+02 0.0054 23.4 21.9 138 76-235 48-195 (365)
365 3a0f_A Xyloglucanase; beta-pro 36.6 2.3E+02 0.0079 25.3 25.6 82 201-282 183-290 (763)
366 4fhn_B Nucleoporin NUP120; pro 28.5 3.7E+02 0.013 25.5 9.8 85 46-134 163-275 (1139)
367 1bpo_A Protein (clathrin); cla 26.6 2.8E+02 0.0096 23.1 23.6 216 76-318 47-284 (494)
368 1b2p_A Protein (lectin); manno 22.1 1.6E+02 0.0055 18.7 11.1 24 148-173 63-86 (119)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=227.00 Aligned_cols=273 Identities=15% Similarity=0.212 Sum_probs=224.0
Q ss_pred hhhhhhhh--cccccccCCCcc----chhccccceeeeecccCC----------CCCcCCCCcceEEcCCCcEEEEeCCC
Q psy13998 13 CFLLQTLL--VSGIGQVGTTPR----SQYLQKRRLQFKIGSRGS----------EPGCFTWPRGIAVGPDNSIVVADSSN 76 (319)
Q Consensus 13 ~~~~~~~~--~~~i~~~~~~~~----~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~g~~~~~~~~~ 76 (319)
+.++.... .+.|.+++|+|+ +.++++++.+..+..|.. ..+|...+.++++++++.++++++.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 34444433 678999999875 557899988888777752 25677889999999999999999999
Q ss_pred CeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEE
Q psy13998 77 HRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIA 151 (319)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (319)
+.|++ |++.+......+. .+..++++|+++++++++.++.|.+|+ ..++....+ ..+...+.+++
T Consensus 102 ~~i~l----Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~------~~~~~~v~~~~ 171 (321)
T 3ow8_A 102 AHIRL----WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL------DTRGKFILSIA 171 (321)
T ss_dssp SEEEE----EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE------ECSSSCEEEEE
T ss_pred CcEEE----EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe------cCCCceEEEEE
Confidence 99999 9988776665443 457899999999999999999999999 566666655 23445678999
Q ss_pred EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCC
Q psy13998 152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGR 230 (319)
Q Consensus 152 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~ 230 (319)
++|+++++++++.++.|++||+... +.+..+ ..+...+.+++++|+++++++++.++.|++||. .+.
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~------~~~~~~------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATG------KLLHTL------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT------EEEEEE------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC------cEEEEE------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 9999999999999999999998743 444444 344556789999999999999999999999996 556
Q ss_pred EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998 231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC 309 (319)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~ 309 (319)
....+ .++...+.+++|+|++.++++++.|+.|++||. +++.+..+ .+|...+.+++|+|+|+++++
T Consensus 240 ~~~~~------~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~------~~h~~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 240 LAGTL------SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF------FDHQDQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp EEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEE
T ss_pred eeEEE------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE------cCCCCcEEEEEECCCCCEEEE
Confidence 66666 566677899999999999999999999999994 67777777 577788999999999999999
Q ss_pred eCCCCeEEeC
Q psy13998 310 DRENHRIQVF 319 (319)
Q Consensus 310 ~~~~~~i~v~ 319 (319)
++.|+.|++|
T Consensus 308 ~~~d~~i~vw 317 (321)
T 3ow8_A 308 VGDDQEIHIY 317 (321)
T ss_dssp EETTCCEEEE
T ss_pred EeCCCeEEEE
Confidence 9999999998
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-33 Score=231.73 Aligned_cols=265 Identities=14% Similarity=0.253 Sum_probs=222.6
Q ss_pred cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
...|.++.|+|++.++++++.+..+..|+... +|...+.+++|+|+|+++++++.|++|++ |+..+..
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i----wd~~~~~ 183 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL----WDFQGFE 183 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE----EETTSSC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE----EeCCCCc
Confidence 45788999999999999999998888886543 45678899999999999999999999999 8887666
Q ss_pred eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998 93 VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 167 (319)
Q Consensus 93 ~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ 167 (319)
....+ ..+.+++++|+++.+++++.++.|++|| .++..+..+ .+|...+..++++++++++++++.|+.
T Consensus 184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~------~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF------TGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE------eCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 55533 3678999999999999999999999999 677777776 456677899999999999999999999
Q ss_pred EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC--------------------CcEEEEeCCCCeEEEEeC
Q psy13998 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT--------------------NRVIVSDSNNHRVQIFDV 227 (319)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------g~~~v~~~~~~~i~~~~~ 227 (319)
|++||+... +....+ ..+...+.+++++|+ +.++++++.++.|++||.
T Consensus 258 v~vwd~~~~------~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~ 325 (410)
T 1vyh_C 258 VRVWVVATK------ECKAEL------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325 (410)
T ss_dssp EEEEETTTC------CEEEEE------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred EEEEECCCC------ceeeEe------cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence 999998753 333333 334456677888775 668999999999999996
Q ss_pred -CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998 228 -NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 305 (319)
.+..+..+ .++...+.+++++|+|+++++++.|+.|++||. +++.+..+ .+|...+++++|+|++.
T Consensus 326 ~~~~~~~~~------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~------~~h~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 326 STGMCLMTL------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL------NAHEHFVTSLDFHKTAP 393 (410)
T ss_dssp TTTEEEEEE------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE------ECCSSCEEEEEECSSSS
T ss_pred CCCceEEEE------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE------cCCCCcEEEEEEcCCCC
Confidence 56667666 566677899999999999999999999999994 56777777 56788899999999999
Q ss_pred EEEEeCCCCeEEeC
Q psy13998 306 ILVCDRENHRIQVF 319 (319)
Q Consensus 306 ~~v~~~~~~~i~v~ 319 (319)
++++++.|+.|++|
T Consensus 394 ~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 394 YVVTGSVDQTVKVW 407 (410)
T ss_dssp CEEEEETTSEEEEE
T ss_pred EEEEEeCCCcEEEE
Confidence 99999999999998
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.3e-33 Score=240.01 Aligned_cols=263 Identities=20% Similarity=0.392 Sum_probs=223.9
Q ss_pred cccccccCCCccchhccccceeeeecccCCC-------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV 93 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~ 93 (319)
...|..++++|++..+.++..+..+..|+.. .+|...+.+++++|+|+++++++.++.|++ |+.. ...
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~----~~~~-~~~ 377 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL----WNRN-GQL 377 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE----EETT-CCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE----EcCC-CCE
Confidence 4567888999999999988877777766543 344567889999999999999999999999 7754 233
Q ss_pred eE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEE
Q psy13998 94 FL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ 169 (319)
Q Consensus 94 ~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~ 169 (319)
.. +-..+.+++++|+++++++++.++.|++|+.+++.+..+ .++...+.+++++|+++++++++.++.|+
T Consensus 378 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe------cCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 33 233678999999999999999999999999888887776 45667789999999999999999999999
Q ss_pred EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998 170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPR 249 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (319)
+|+..++ .+..+ ..+...+.+++++|+++++++++.++.|++|+.+++.+..+ .++...+.
T Consensus 452 ~w~~~~~-------~~~~~------~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~------~~h~~~v~ 512 (577)
T 2ymu_A 452 LWNRNGQ-------LLQTL------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVR 512 (577)
T ss_dssp EEETTSC-------EEEEE------ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEE------ECCSSCEE
T ss_pred EEECCCC-------EEEEE------cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE------eCCCCCEE
Confidence 9998753 33333 33456678999999999999999999999999999988888 66777889
Q ss_pred eEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 250 GVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 250 ~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+++|+|+|+++++++.|+.|++||.+|+.+..+ .+|...+++++|+|||+++++++.|+.|++|
T Consensus 513 ~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~------~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 513 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTTSCEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE------cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 999999999999999999999999999998888 6788899999999999999999999999998
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=221.33 Aligned_cols=265 Identities=12% Similarity=0.119 Sum_probs=203.6
Q ss_pred cccccccCCCccchhccccceeeeecccCC------------CCC-------cCCCCcceEEcCCCcEEEEeCCCCeEEE
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS------------EPG-------CFTWPRGIAVGPDNSIVVADSSNHRVQV 81 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~-------~~~~~~~v~~~~~g~~~~~~~~~~~v~~ 81 (319)
...|.++.|+|++.+++.++ +.+...|+. ..+ +...+.+++|++++. +++++.|++|++
T Consensus 30 ~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-l~~~s~dg~v~l 107 (344)
T 4gqb_B 30 ERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG-ILVASDSGAVEL 107 (344)
T ss_dssp CSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE-EEEEETTSEEEE
T ss_pred cCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe-EEEEECCCEEEE
Confidence 45688999999999988765 434444421 111 124578999999865 667888999999
Q ss_pred eccccccccceeeE--------EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEE
Q psy13998 82 CFPHFDLKTNCVFL--------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAV 152 (319)
Q Consensus 82 ~~~~~~~~~~~~~~--------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (319)
|++.+++... |-..+.+++|+|+|+++++++.++.|++|| .+++.+..+ .+|...+.++++
T Consensus 108 ----Wd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~------~~h~~~V~~~~~ 177 (344)
T 4gqb_B 108 ----WELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY------RAHAAQVTCVAA 177 (344)
T ss_dssp ----EEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEE
T ss_pred ----EeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE------cCcCCceEEEEe
Confidence 8887654332 234678999999999999999999999999 677777777 567788999999
Q ss_pred eCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCCCCeEEEEeC-CC
Q psy13998 153 SNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDV-NG 229 (319)
Q Consensus 153 ~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~~~i~~~~~-~~ 229 (319)
++++ .++++++.|+.|++||++.. +....+.. ..+...+.+++++|+ ++++++++.++.|++||. ++
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~----~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCP------KPASQIGC----SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSS------SCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred cCCCCCceeeecccccccccccccc------ceeeeeec----ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence 9987 58899999999999998743 33333321 122334678999985 578899999999999996 56
Q ss_pred CEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EE
Q psy13998 230 RVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-IL 307 (319)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~ 307 (319)
+.+..+ .++...+.+++|+|+| +++++++.|+.|++||.....+..+ .+|...+++++|+|++. ++
T Consensus 248 ~~~~~~------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~------~~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 248 SCVLSS------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS------QAHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp -CCEEE------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE------CCCSSCEEEEEECSSSTTEE
T ss_pred cEEEEE------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE------cCCCCCEEEEEEeCCCCeEE
Confidence 666666 5677788999999998 5888999999999999654444444 57888999999999986 78
Q ss_pred EEeCCCCeEEeC
Q psy13998 308 VCDRENHRIQVF 319 (319)
Q Consensus 308 v~~~~~~~i~v~ 319 (319)
++++.|++|++|
T Consensus 316 as~s~D~~v~~w 327 (344)
T 4gqb_B 316 TTVGWDHQVVHH 327 (344)
T ss_dssp EEEETTSCEEEE
T ss_pred EEEcCCCeEEEE
Confidence 899999999998
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-32 Score=219.81 Aligned_cols=266 Identities=14% Similarity=0.203 Sum_probs=216.4
Q ss_pred cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
...|.++.|+|++.++++++.+..+..|+...+ |...+.+++|+|+|+++++++.|+.+++ |+..+..
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i----w~~~~~~ 130 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI----YNLKTRE 130 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE----EETTTCS
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE----EECccCC
Confidence 467889999999999999999998888875533 4467889999999999999999999999 7775432
Q ss_pred ----eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC
Q psy13998 93 ----VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 163 (319)
Q Consensus 93 ----~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 163 (319)
... +...+.++.+.+++. +++++.++.|++|| .+++.+..+ .+|...+.+++++|+++++++++
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF------TGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE------cCCCCceEEEEECCCCCEEEEEe
Confidence 111 223567788887765 67777899999999 567777766 45667889999999999999999
Q ss_pred CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCc
Q psy13998 164 NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEE 242 (319)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 242 (319)
.++.|++||+... .....+ ..+...+.+++++|+++++++++.++.|++||.. ++.+..+.. .
T Consensus 204 ~d~~v~~wd~~~~------~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~----~ 267 (340)
T 1got_B 204 CDASAKLWDVREG------MCRQTF------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH----D 267 (340)
T ss_dssp TTSCEEEEETTTC------SEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----T
T ss_pred CCCcEEEEECCCC------eeEEEE------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc----C
Confidence 9999999998742 444444 3455678899999999999999999999999964 455555421 1
Q ss_pred ccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.....+.+++|+|+|+++++++.++.|++|| ..++.+..+ .+|...+.+++|+|+|.++++++.|+.|++|
T Consensus 268 ~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~------~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe------ecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 2233578899999999999999999999999 467777777 5788899999999999999999999999998
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-31 Score=216.10 Aligned_cols=267 Identities=12% Similarity=0.203 Sum_probs=217.5
Q ss_pred cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN- 91 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~- 91 (319)
...|.+++|+|++.++++++.+.++..|+...+ +...+.+++|+|+|+++++++.|+.+++ |+....
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v----~~~~~~~ 139 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV----YPLTFDK 139 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE----EECCCCT
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE----EEEeccc
Confidence 467899999999999999999999999976544 3467889999999999999999999999 654321
Q ss_pred --------ee-eEEecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC--CCeEE
Q psy13998 92 --------CV-FLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN--TNRVI 159 (319)
Q Consensus 92 --------~~-~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~g~~~ 159 (319)
.. ..+...+.+++|++++..+++++.++.|++|| .+++.+..+ .+|...+.++++.+ +++++
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF------HGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEECCCSSCCEE
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE------cCCCCCeEEEEEEeCCCCCEE
Confidence 11 11344678899999999999999999999999 677777777 45666778888877 56899
Q ss_pred EEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCCC
Q psy13998 160 VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSE 238 (319)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~~ 238 (319)
++++.|+.|++||++.. +.+..+ ..+...+.+++++|++.++++++.++.|++||... ..+..+..
T Consensus 214 ~sgs~Dg~v~~wd~~~~------~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~- 280 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSG------QCVQAF------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK- 280 (354)
T ss_dssp EEEETTSCEEEEETTTC------CEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-
T ss_pred EEEeCCCeEEEEECCCC------cEEEEe------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-
Confidence 99999999999998742 444444 34556788999999999999999999999999654 44444421
Q ss_pred CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998 239 GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317 (319)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~ 317 (319)
......+..++++|+|+++++++.++.|++|| .+++.+..+ .+|...+++++|+|||+++++++.|+.|+
T Consensus 281 ---~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l------~~h~~~v~~l~~spdg~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 281 ---ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL------FGHENRVSTLRVSPDGTAFCSGSWDHTLR 351 (354)
T ss_dssp ---TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE------CCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred ---CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE------ECCCCcEEEEEECCCCCEEEEEcCCCCEE
Confidence 11223467899999999999999999999999 478888777 67888999999999999999999999999
Q ss_pred eC
Q psy13998 318 VF 319 (319)
Q Consensus 318 v~ 319 (319)
+|
T Consensus 352 vW 353 (354)
T 2pbi_B 352 VW 353 (354)
T ss_dssp EE
T ss_pred ec
Confidence 98
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.9e-32 Score=219.27 Aligned_cols=265 Identities=12% Similarity=0.130 Sum_probs=201.3
Q ss_pred cccccccCCCccchhccccce------eeeecccCCCC------------CcCCCCcceEEcCCCcEEEEeCCCCeEEEe
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRL------QFKIGSRGSEP------------GCFTWPRGIAVGPDNSIVVADSSNHRVQVC 82 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~------~~~~~~~~~~~------------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~ 82 (319)
...|.+++|||+|.+|++++. +..+..|.... +|...+.+++|+|++++++ ++.++.|++
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~dg~v~l- 119 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASDSGAVEL- 119 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EETTSCEEE-
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EECCCEEEE-
Confidence 567899999999999999875 44454444322 2345688999999987655 567899999
Q ss_pred ccccccccceeeE--------EecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEe
Q psy13998 83 FPHFDLKTNCVFL--------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS 153 (319)
Q Consensus 83 ~~~~~~~~~~~~~--------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (319)
|++.+.+... +-..+.+++|+|+++++++++.++.|++|| .+++.+..+ ..|...+.+++++
T Consensus 120 ---Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~------~~h~~~v~~v~~s 190 (357)
T 4g56_B 120 ---WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY------NAHSSEVNCVAAC 190 (357)
T ss_dssp ---C--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEEC
T ss_pred ---eeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE------cCCCCCEEEEEEc
Confidence 8876554322 223678999999999999999999999999 567777777 5566788999999
Q ss_pred CCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeC-CCC
Q psy13998 154 NTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDV-NGR 230 (319)
Q Consensus 154 ~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~-~~~ 230 (319)
+++ .++++++.++.|++||++.. +....... ..+...+.+++++|++ .++++++.++.|++||. +++
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~------~~~~~~~~----~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~ 260 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKP------KPATRIDF----CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD 260 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSS------SCBCBCCC----TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred cCCCceeeeeccCCceEEEECCCC------ceeeeeee----ccccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence 976 57888899999999998742 22222211 2233457889999874 78888889999999995 556
Q ss_pred EEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEcc-CCcEE
Q psy13998 231 VITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMS-NGNIL 307 (319)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~ 307 (319)
.+..+ ..+...+.+++|+|++ +++++++.|+.|++||.+ ++.++.+ +|...+++++|+| |+.++
T Consensus 261 ~~~~~------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-------~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 261 SAQTS------AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-------SHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp GCEEE------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-------CCSSCEEEEEECSSSTTEE
T ss_pred EeEEE------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-------CCCCCEEEEEEeCCCCCEE
Confidence 66666 5566678999999987 688899999999999954 5555543 6778899999998 78899
Q ss_pred EEeCCCCeEEeC
Q psy13998 308 VCDRENHRIQVF 319 (319)
Q Consensus 308 v~~~~~~~i~v~ 319 (319)
++++.|+.|++|
T Consensus 328 ~s~s~Dg~v~iW 339 (357)
T 4g56_B 328 TTVGWDHKVLHH 339 (357)
T ss_dssp EEEETTSCEEEE
T ss_pred EEEcCCCeEEEE
Confidence 999999999998
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.9e-32 Score=231.50 Aligned_cols=264 Identities=19% Similarity=0.390 Sum_probs=223.3
Q ss_pred cccccccCCCccchhccccceeeeecccCCC-------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV 93 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~ 93 (319)
...|..++++|++..+.++..+..+..|... .+|...+.+++++|+++++++++.++.|++ |+......
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~----w~~~~~~~ 337 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL----WNRNGQHL 337 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE----EETTSCEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEE----EeCCCCee
Confidence 4668888999999998888777666666432 456678899999999999999999999999 87754332
Q ss_pred eE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEE
Q psy13998 94 FL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI 170 (319)
Q Consensus 94 ~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~ 170 (319)
.. +...+.+++++|+++.++++..++.|++|+.+++.+..+ ..+...+.+++++|+++++++++.++.|++
T Consensus 338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~------~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEe------cCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 22 223568899999999999999999999999888887777 456677899999999999999999999999
Q ss_pred EecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcce
Q psy13998 171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRG 250 (319)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (319)
|+..++ .+..+ ..+...+.+++++|+++++++++.++.|++|+.+++.+..+ .++...+.+
T Consensus 412 ~~~~~~-------~~~~~------~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~------~~~~~~v~~ 472 (577)
T 2ymu_A 412 WNRNGQ-------LLQTL------TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVRG 472 (577)
T ss_dssp ECTTCC-------EEEEE------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEE------ECCSSCEEE
T ss_pred EeCCCC-------EEEEe------cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEE------cCCCCCEEE
Confidence 997653 33333 33455678899999999999999999999999998888877 566677899
Q ss_pred EEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 251 VAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 251 i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
++++|+++++++++.++.|++|+.+++.++.+ .+|...+.+++|+|||+++++++.|+.|++|
T Consensus 473 ~~~spd~~~las~~~d~~i~iw~~~~~~~~~~------~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 473 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSCEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE------eCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence 99999999999999999999999999999888 6788889999999999999999999999998
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.8e-31 Score=214.21 Aligned_cols=281 Identities=13% Similarity=0.241 Sum_probs=217.1
Q ss_pred cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
...|.+++|+|++.++++++.+.++.+|+... +|...+.+++|+|+|+++++++.|+.+++ |++.+..
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i----w~~~~~~ 141 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI----FNLSSQA 141 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE----EECCCCS
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE----EECCCCc
Confidence 56789999999999999999999999997654 35577899999999999999999999999 7764321
Q ss_pred e-----------eEEecCceeeEEcCCC-cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC-CCeE
Q psy13998 93 V-----------FLAFTWPRGIAVGPDN-SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRV 158 (319)
Q Consensus 93 ~-----------~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~ 158 (319)
. ..+...+.++.+.|++ ..+++++.|+.|++|| .+++.+..+... ...+|...+.++++.+ ++++
T Consensus 142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-FPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-SSSSCCSCEEEEEECSSSCCE
T ss_pred cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-cCCCCccCeEEEEeecCCCCE
Confidence 0 1123356678888864 5788999999999999 567766655321 1135667788999987 7899
Q ss_pred EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCC
Q psy13998 159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGS 237 (319)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~ 237 (319)
+++++.|+.|++||++.. +..+..+ ..|...+.+++++|+++++++++.|+.|++||. .+..+..+..
T Consensus 221 l~sgs~D~~v~~wd~~~~-----~~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRIT-----SRAVRTY------HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp EEEEETTSCEEEEETTTT-----CCCCEEE------CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCeEEEEECCCC-----CcceEEE------CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 999999999999998631 1223333 345667889999999999999999999999996 4555555532
Q ss_pred CCC-CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCe
Q psy13998 238 EGS-EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHR 315 (319)
Q Consensus 238 ~~~-~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~ 315 (319)
... ...+...+.+++|+|+|+++++++.++.|++||. .++.+..+... ..+|...+.+++|+|||+++++++.|+.
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL--QNSHEGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS--CSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc--cCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence 211 1122334789999999999999999999999994 56666555321 1356778999999999999999999999
Q ss_pred EEeC
Q psy13998 316 IQVF 319 (319)
Q Consensus 316 i~v~ 319 (319)
|++|
T Consensus 368 i~iW 371 (380)
T 3iz6_a 368 LKIW 371 (380)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 10
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=100.00 E-value=3.2e-29 Score=196.91 Aligned_cols=250 Identities=34% Similarity=0.647 Sum_probs=200.7
Q ss_pred ceeeeecccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE----------ecCceeeEE-cCC
Q psy13998 40 RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----------FTWPRGIAV-GPD 108 (319)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~~l~~-~~~ 108 (319)
....+|+..+...+++..|.+|+++++|++|+++..++.|.+ |+.. ...... +..|.++++ +++
T Consensus 14 ~~~~~~g~~g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~----~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~ 88 (286)
T 1q7f_A 14 IYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQI----FDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNS 88 (286)
T ss_dssp CEEEEECCBSSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEE----ECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTT
T ss_pred EEEEeccCCCCCCCccCCCceEEECCCCCEEEEECCCCEEEE----ECCC-CcEEEEecccCCCcccccCceEEEEEcCC
Confidence 445677888888999999999999999999999998999999 7765 223322 247889999 578
Q ss_pred CcEEEEcCC-CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeee
Q psy13998 109 NSIVVADSS-NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGK 187 (319)
Q Consensus 109 g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 187 (319)
+++|+++.. ++.|.+|+.+++.+..+.. .....|.+++++++|++|+++..++.|.+|+.++. .+..
T Consensus 89 g~l~v~~~~~~~~i~~~d~~g~~~~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-------~~~~ 156 (286)
T 1q7f_A 89 GDIIVTERSPTHQIQIYNQYGQFVRKFGA-----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-------VLHK 156 (286)
T ss_dssp TEEEEEECGGGCEEEEECTTSCEEEEECT-----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-------EEEE
T ss_pred CeEEEEcCCCCCEEEEECCCCcEEEEecC-----ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-------EEEE
Confidence 899999864 7899999998888777642 23467899999999999999998999999998763 3333
Q ss_pred ecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC
Q psy13998 188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN 267 (319)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~ 267 (319)
+.. ......|.+++++++|++|+++..++.|++|+.+++.+..+... +.+..|.+|+++++|++|+++..++
T Consensus 157 ~~~----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~----g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 157 FGC----SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE----GITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp EEC----TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT----TTSCSEEEEEECTTCCEEEEECSSS
T ss_pred eCC----CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccC----CccCCCcEEEECCCCCEEEEeCCCC
Confidence 321 13445789999999999999999899999999999887777431 2346799999999999999999886
Q ss_pred -EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 268 -RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 268 -~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.|.+|+.+|+.+..+.. ......|.+++++++|++|+++ .+++|++|
T Consensus 229 ~~i~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~g~l~vs~-~~~~v~v~ 276 (286)
T 1q7f_A 229 FNLTIFTQDGQLISALES----KVKHAQCFDVALMDDGSVVLAS-KDYRLYIY 276 (286)
T ss_dssp CEEEEECTTSCEEEEEEE----SSCCSCEEEEEEETTTEEEEEE-TTTEEEEE
T ss_pred EEEEEECCCCCEEEEEcc----cCCCCcceeEEECCCCcEEEEC-CCCeEEEE
Confidence 99999999988877743 1223458899999999999996 58999987
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.9e-30 Score=204.51 Aligned_cols=263 Identities=14% Similarity=0.213 Sum_probs=211.1
Q ss_pred cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
.+.|.+++|+|++.+++++..+..+..|+...+ |...+.+++|+++++++++++.|+.|++ |+..+..
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v----wd~~~~~ 88 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV----FNYNTGE 88 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE----EETTTCC
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE----EECCCCc
Confidence 577999999999999999999988888876544 3456789999999999999999999999 9988776
Q ss_pred eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCc-EEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC
Q psy13998 93 VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGT-FVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN 165 (319)
Q Consensus 93 ~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~ 165 (319)
....+ ..+.+++++|+++++++++.|+.|++|| .++. ....+ .+|...+.+++++| ++.++++++.|
T Consensus 89 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~------~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF------EGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE------CCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh------cccCCcEEEEEECCCCCCEEEEEeCC
Confidence 65543 3678999999999999999999999999 4443 33444 45667889999999 67899999999
Q ss_pred CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC--CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCc
Q psy13998 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEE 242 (319)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~ 242 (319)
+.|++||+... .....+. ..+......+.+.+ ++.++++++.++.|++||. +++.+..+ .
T Consensus 163 ~~v~iwd~~~~------~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~------~ 225 (304)
T 2ynn_A 163 RTVKVWSLGQS------TPNFTLT-----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL------E 225 (304)
T ss_dssp SEEEEEETTCS------SCSEEEE-----CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE------E
T ss_pred CeEEEEECCCC------Cccceec-----cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee------C
Confidence 99999998642 1111111 12223455677765 6789999999999999996 56666776 5
Q ss_pred ccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc--EEEEeCCCCeE
Q psy13998 243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRI 316 (319)
Q Consensus 243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i 316 (319)
+|...+..++++|++.++++++.|+.|++||. +++.++.+ ..+...+++++++|++. +++++..++.+
T Consensus 226 ~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~asg~~~g~~ 296 (304)
T 2ynn_A 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL------NVGLERSWCIATHPTGRKNYIASGFDNGFT 296 (304)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE------CCSSSSEEEEEECTTCGGGCEEEEETTEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec------cCCCccEEEEEECCCCCceEEEEecCCceE
Confidence 67778899999999999999999999999994 67888887 56777899999999875 57777777654
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.3e-30 Score=205.55 Aligned_cols=269 Identities=14% Similarity=0.222 Sum_probs=211.4
Q ss_pred cccccccCCCccc-hhccccceeeeecccCC-------------CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccc
Q psy13998 21 VSGIGQVGTTPRS-QYLQKRRLQFKIGSRGS-------------EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHF 86 (319)
Q Consensus 21 ~~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~ 86 (319)
...|..++++|.+ .++++++.+..+..|.. ..+|...+.+++++++|+++++++.|++|++ |
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~----w 92 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL----W 92 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE----E
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE----E
Confidence 5778999999865 78899988888777742 2467788999999999999999999999999 9
Q ss_pred ccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC------C
Q psy13998 87 DLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT------N 156 (319)
Q Consensus 87 ~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------g 156 (319)
+..+......+ ..+.++++++++.++++++.|+.|++||..++.+..+ .+|...+..+++.|. +
T Consensus 93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL------LGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE------CCCSSCEEEEEECCC------C
T ss_pred ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE------eccCCcEEEEEEccCCCCCCCc
Confidence 98877765543 3678999999999999999999999999888877766 456677888999874 4
Q ss_pred eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEe
Q psy13998 157 RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSF 235 (319)
Q Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~ 235 (319)
..+++++.++.|++||+... +....+ ..+...+.+++++|+++++++++.++.|++||.. ++.+..+
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~------~~~~~~------~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQF------QIEADF------IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp CEEEEEETTSCEEEEETTTT------EEEEEE------CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred cEEEEEeCCCEEEEEECCcc------hhheee------cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 48899999999999999753 333333 3456678899999999999999999999999964 4555555
Q ss_pred CCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc-eEEeeccc--CCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998 236 GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ-FLRAFGCW--GSGDGEFKGLEGVAVMSNGNILVCDRE 312 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~-~~~~~~~~--~~~~~~~~~~~~l~~~~~g~~~v~~~~ 312 (319)
. ....+.+++|+|++.+++++.. ..+++|+.+.. .+..+... .....+...+.+++|+|||+++++++.
T Consensus 235 ~-------~~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 235 S-------AQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp E-------CCSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred c-------CCCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 2 2235789999999988877664 56999996543 33333211 111223456789999999999999999
Q ss_pred CCeEEeC
Q psy13998 313 NHRIQVF 319 (319)
Q Consensus 313 ~~~i~v~ 319 (319)
|+.|++|
T Consensus 307 Dg~i~vW 313 (319)
T 3frx_A 307 DNVIRVW 313 (319)
T ss_dssp TSCEEEE
T ss_pred CceEEEE
Confidence 9999998
No 13
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-30 Score=205.10 Aligned_cols=236 Identities=15% Similarity=0.223 Sum_probs=192.1
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-S 126 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~ 126 (319)
.+|...|.+++|+|+|+++++++.|+.|++ |+..+......+. .+.+++++++++++++++.++.|++|| .
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~l----Wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEL----WNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEE----EETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEE----EECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 467788999999999999999999999999 9988776655443 567899999999999999999999999 6
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
+++.+..+ .+|...+.+++++|++.++++++.|+.|++||++... .....+ ..+...+.++++
T Consensus 86 ~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-----~~~~~~------~~h~~~v~~v~~ 148 (304)
T 2ynn_A 86 TGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----ALEQTF------EGHEHFVMCVAF 148 (304)
T ss_dssp TCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----EEEEEE------CCCCSCEEEEEE
T ss_pred CCcEEEEE------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----chhhhh------cccCCcEEEEEE
Confidence 77777777 5677788999999999999999999999999986420 222222 345567889999
Q ss_pred cC-CCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcC--CCcEEEEeCCCCEEEEEc-CCCceEEe
Q psy13998 207 SN-TNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDD--QGYISVGDSGNNRIQIFT-PDGQFLRA 281 (319)
Q Consensus 207 ~~-~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~--~g~~~v~~~~~~~i~~~~-~~g~~~~~ 281 (319)
+| ++.++++++.++.|++||.. +.....+. ..+...+..+++.| ++.++++++.|+.|++|| .+++.+..
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~ 223 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-----CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCccceec-----cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee
Confidence 98 56899999999999999963 33322221 22333456777775 678999999999999999 46777777
Q ss_pred ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+ .+|...+..++|+|++.++++++.|+.|++|
T Consensus 224 ~------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 224 L------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (304)
T ss_dssp E------ECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred e------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 7 6788899999999999999999999999998
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-29 Score=202.60 Aligned_cols=235 Identities=16% Similarity=0.234 Sum_probs=191.9
Q ss_pred CCCcCCCCcceEEcCC----CcEEEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcCCCcEEEEcCCCCe
Q psy13998 51 EPGCFTWPRGIAVGPD----NSIVVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGPDNSIVVADSSNHR 120 (319)
Q Consensus 51 ~~~~~~~~~~v~~~~~----g~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~g~~~~~~~~~~~ 120 (319)
..+|...+++++|+++ ++++++++.|++|++ |+........ +...+.++++++++.++++++.++.
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~v----W~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKV----WKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEE----EEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEE----EECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 3578899999999875 568999999999999 7765443221 2346788999999999999999999
Q ss_pred EEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998 121 VQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE 199 (319)
Q Consensus 121 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (319)
|++|| .+++.+..+. .+...+..++++|+++++++++.++.+.+|+++.. +....+ ..+..
T Consensus 104 i~lWd~~~~~~~~~~~------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~------~~~~~~------~~~~~ 165 (321)
T 3ow8_A 104 IRLWDLENGKQIKSID------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG------KKEYSL------DTRGK 165 (321)
T ss_dssp EEEEETTTTEEEEEEE------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC------SEEEEE------ECSSS
T ss_pred EEEEECCCCCEEEEEe------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC------ceeEEe------cCCCc
Confidence 99999 5677776663 33456688999999999999999999999998743 333333 22334
Q ss_pred CceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCc
Q psy13998 200 HPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQ 277 (319)
Q Consensus 200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~ 277 (319)
.+.+++++|+++++++++.++.|++||. +++.+..+ .++...+.+++|+|+++++++++.++.|++||. .++
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 5788999999999999999999999996 56666776 556667899999999999999999999999994 567
Q ss_pred eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.+..+ .+|...+.+++|+|++.++++++.|+.|++|
T Consensus 240 ~~~~~------~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iw 275 (321)
T 3ow8_A 240 LAGTL------SGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275 (321)
T ss_dssp EEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeEEE------cCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 77777 6788889999999999999999999999998
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-30 Score=210.90 Aligned_cols=269 Identities=15% Similarity=0.254 Sum_probs=207.4
Q ss_pred cccccccCCCccchhccccceeeeecccCCCCCc--------------------------CCCCcceEEcCCCcEEEEeC
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGC--------------------------FTWPRGIAVGPDNSIVVADS 74 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------------~~~~~~v~~~~~g~~~~~~~ 74 (319)
...|.+++|+|++.+++++. +..+..|....+. ...+.+++|+|+|+++++++
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 45788999999999998865 3344444332221 11377999999999999999
Q ss_pred CCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCcee
Q psy13998 75 SNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHY 149 (319)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 149 (319)
.|+.|++ |+..+......+ ..+.+++|+|+++.+++++.++.|++|| .+++....+. +...+..
T Consensus 143 ~d~~i~i----wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------~~~~v~~ 211 (393)
T 1erj_A 143 EDRLIRI----WDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-------IEDGVTT 211 (393)
T ss_dssp TTSCEEE----EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------CSSCEEE
T ss_pred CCCeEEE----EECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-------cCCCcEE
Confidence 9999999 988776665533 3578999999999999999999999999 5566555542 2245788
Q ss_pred EEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc-CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC
Q psy13998 150 IAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM-GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 227 (319)
Q Consensus 150 l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~ 227 (319)
++++| +++++++++.++.|++||.... ..+..+... .....+...+.+++++|+++++++++.++.|++||.
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETG------FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTC------CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCC------cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 99998 8899999999999999998743 333332111 111345567889999999999999999999999996
Q ss_pred CCC-------------EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCC
Q psy13998 228 NGR-------------VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFK 293 (319)
Q Consensus 228 ~~~-------------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~ 293 (319)
... ....+ .++...+.++++++++.++++++.|+.|++|| .+++.+..+ .+|..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l------~~h~~ 353 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTY------IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML------QGHRN 353 (393)
T ss_dssp ---------------CEEEEE------ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE------ECCSS
T ss_pred CCCCCcccccCCCCCcceEEE------ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE------CCCCC
Confidence 421 12222 34556688999999999999999999999999 567887777 57888
Q ss_pred CcceEEEcc------CCcEEEEeCCCCeEEeC
Q psy13998 294 GLEGVAVMS------NGNILVCDRENHRIQVF 319 (319)
Q Consensus 294 ~~~~l~~~~------~g~~~v~~~~~~~i~v~ 319 (319)
.+.++++++ +++++++++.|+.|++|
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred CEEEEEecCCcCcCCCCCEEEEECCCCcEEEC
Confidence 899999876 68899999999999998
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=8.6e-30 Score=202.69 Aligned_cols=266 Identities=14% Similarity=0.261 Sum_probs=211.6
Q ss_pred cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
...|.+++|+|++.+++++..+..+..|+... +|...+.+++|+|+++++++++.|+.|++ |+..+..
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v----wd~~~~~ 98 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI----WDVSSGK 98 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE----EETTTCC
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE----EECCCCc
Confidence 56799999999999999998888877776543 45567899999999999999999999999 8887766
Q ss_pred eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998 93 VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 167 (319)
Q Consensus 93 ~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ 167 (319)
....+ ..+.+++++|+++++++++.++.|++|| .+++.+..+ ..+...+.+++++++++++++++.++.
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------PAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe------cCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 55543 3568899999999999999999999999 567777766 445567899999999999999999999
Q ss_pred EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCccccc
Q psy13998 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLK 246 (319)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~ 246 (319)
|++||+... +.+..+. ..+......++++|+++++++++.++.|++||. +++.+..+. ++..
T Consensus 173 i~~wd~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~ 235 (312)
T 4ery_A 173 CRIWDTASG------QCLKTLI-----DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT------GHKN 235 (312)
T ss_dssp EEEEETTTC------CEEEEEC-----CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC------SSCC
T ss_pred EEEEECCCC------ceeeEEe-----ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE------ecCC
Confidence 999998743 3333321 122334677999999999999999999999996 455566652 2221
Q ss_pred C--cceEEE-cCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeC--CCCeEEeC
Q psy13998 247 F--PRGVAV-DDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR--ENHRIQVF 319 (319)
Q Consensus 247 ~--~~~i~~-~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~--~~~~i~v~ 319 (319)
. .....+ .+++.++++++.++.|++|+. +++.+..+ .+|...+.+++++|++.++++++ .|+.|++|
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL------QGHTDVVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh------hccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence 1 122333 356789999999999999994 67777777 67888899999999999888775 69999998
No 17
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.98 E-value=5.2e-30 Score=211.34 Aligned_cols=234 Identities=16% Similarity=0.265 Sum_probs=197.1
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S 126 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~ 126 (319)
.+|...|.+++|+|+++++++++.|+.|++ |+..+......+ ..+.+++|+++++++++++.|+.|++|| .
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~v----wd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKV----WDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEE----EETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEE----EECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 467788999999999999999999999999 888766555433 4678999999999999999999999999 4
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
.++.+..+ .+|...+.+++++|+++++++++.|+.|++||+... ..+..+ ..+...+..+++
T Consensus 181 ~~~~~~~~------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~------~~~~~~------~~h~~~v~~~~~ 242 (410)
T 1vyh_C 181 GFECIRTM------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------YCVKTF------TGHREWVRMVRP 242 (410)
T ss_dssp SSCEEECC------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEE------ECCSSCEEEEEE
T ss_pred CCceeEEE------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------cEEEEE------eCCCccEEEEEE
Confidence 55666665 566778899999999999999999999999998743 444444 345566788999
Q ss_pred cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC--------------------CcEEEEeCC
Q psy13998 207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ--------------------GYISVGDSG 265 (319)
Q Consensus 207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------------g~~~v~~~~ 265 (319)
++++.++++++.++.|++||. .+.....+ ..+...+.+++++|+ |.++++++.
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATKECKAEL------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCceeeEe------cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 999999999999999999996 55666666 455667888999886 668999999
Q ss_pred CCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 266 NNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 266 ~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
|+.|++|| ..++.+..+ .+|...+.+++|+|+|+++++++.|+.|++|
T Consensus 317 D~~i~iwd~~~~~~~~~~------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vw 365 (410)
T 1vyh_C 317 DKTIKMWDVSTGMCLMTL------VGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365 (410)
T ss_dssp TSEEEEEETTTTEEEEEE------ECCSSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred CCeEEEEECCCCceEEEE------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 99999999 567777777 5778889999999999999999999999998
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.98 E-value=1.9e-30 Score=209.13 Aligned_cols=271 Identities=13% Similarity=0.149 Sum_probs=205.5
Q ss_pred cccccCCCccchhccccceeeeecccCCC-----------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc
Q psy13998 23 GIGQVGTTPRSQYLQKRRLQFKIGSRGSE-----------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN 91 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~ 91 (319)
.+..++|+|++.++++++.+..+.+|+.. .+|...+.+++|+|+|+++++++.|+.+++ |+..+.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i----w~~~~~ 93 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI----WKKNQD 93 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE----EEECCC
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE----EEccCC
Confidence 78899999999999999888877777432 467778999999999999999999999999 877544
Q ss_pred e--eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCc---EEEEecCCCccCCCCCCceeEEEeCCCeEEEE
Q psy13998 92 C--VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS 161 (319)
Q Consensus 92 ~--~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 161 (319)
. ... +...+.+++|+|+++++++++.|+.|++||. .+. .+..+ ..|...+.+++++|+++++++
T Consensus 94 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL------NSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp -EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE------CCCCSCEEEEEECSSSSCEEE
T ss_pred CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe------cCcCCCeEEEEECCCCCEEEE
Confidence 2 222 2346789999999999999999999999994 332 23333 456677899999999999999
Q ss_pred eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC--C----------
Q psy13998 162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN--G---------- 229 (319)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~--~---------- 229 (319)
++.++.|++|+...... .....+ ..+...+.+++++|+++++++++.++.|++|+.. +
T Consensus 168 ~s~d~~i~~w~~~~~~~----~~~~~~------~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDW----VCCATL------EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp EETTSCEEEEEEETTEE----EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred EeCCCcEEEEEecCCCE----EEEEEe------cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 99999999999764211 111222 3456678999999999999999999999999841 1
Q ss_pred ----CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCc-----eEEeecccCCCCCCCCCcceEEE
Q psy13998 230 ----RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ-----FLRAFGCWGSGDGEFKGLEGVAV 300 (319)
Q Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~l~~ 300 (319)
..+..+. ..+...+.++++++++..+++++.|+.|++|+.+.. ....+. .....+|...+++++|
T Consensus 238 ~~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~v~~ 311 (345)
T 3fm0_A 238 DPSWKCICTLS-----GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT-AHLHQAHSQDVNCVAW 311 (345)
T ss_dssp -CEEEEEEEEC-----SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE-EEETTSSSSCEEEEEE
T ss_pred CCccceeEEec-----CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE-eeecccccCcEeEeEE
Confidence 0111120 124456789999999999999999999999984321 000000 0001357788999999
Q ss_pred ccCCc-EEEEeCCCCeEEeC
Q psy13998 301 MSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 301 ~~~g~-~~v~~~~~~~i~v~ 319 (319)
+|++. ++++++.|+.|++|
T Consensus 312 ~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 312 NPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp CSSSTTEEEEEETTSCEEEE
T ss_pred eCCCceEEEEcCCCCcEEEE
Confidence 99984 99999999999998
No 19
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1.6e-29 Score=203.74 Aligned_cols=271 Identities=13% Similarity=0.151 Sum_probs=204.4
Q ss_pred cccccccCC-----Cc-cchhccccceeeeecccCCC---------------CCcCCCCcceEEcCCCcEEEEeCCCCeE
Q psy13998 21 VSGIGQVGT-----TP-RSQYLQKRRLQFKIGSRGSE---------------PGCFTWPRGIAVGPDNSIVVADSSNHRV 79 (319)
Q Consensus 21 ~~~i~~~~~-----~~-~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v 79 (319)
...|.+++| ++ ++.++++++.+..+..|+.. .+|...+.+++++|++.++++++.|++|
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v 100 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcE
Confidence 567888877 65 88899999988887777532 3566788999999999999999999999
Q ss_pred EEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC
Q psy13998 80 QVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 155 (319)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (319)
++ |++.+......+ ..+.+++|+|+++.+++++.++.|++||..+......... ..+...+.+++++|+
T Consensus 101 ~l----wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~v~~~~~~~~ 173 (343)
T 2xzm_R 101 RL----WDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPI 173 (343)
T ss_dssp EE----EETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTT---TSCSSCEEEEEECCC
T ss_pred EE----EECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecc---cCCCceeeeeeeccc
Confidence 99 998777665533 3678999999999999999999999999766554433211 245567889999987
Q ss_pred C----------eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEE
Q psy13998 156 N----------RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 225 (319)
Q Consensus 156 g----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~ 225 (319)
+ .++++++.++.|++||..+ +....+ ..+...+.+++++|+|+++++++.++.|++|
T Consensus 174 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~------~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 174 MKSANKVQPFAPYFASVGWDGRLKVWNTNF-------QIRYTF------KAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp CCSCSCCCSSCCEEEEEETTSEEEEEETTT-------EEEEEE------ECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred cccccccCCCCCEEEEEcCCCEEEEEcCCC-------ceeEEE------cCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 6 6899999999999999654 222222 3455668899999999999999999999999
Q ss_pred eC-CCC-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEE--eeccc-----CCCCCCCCCc
Q psy13998 226 DV-NGR-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLR--AFGCW-----GSGDGEFKGL 295 (319)
Q Consensus 226 ~~-~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~--~~~~~-----~~~~~~~~~~ 295 (319)
|. +.. ....+ .+...+.+++|+|++.+++++ .++.|++|+.. ++... .+... ....++...+
T Consensus 241 d~~~~~~~~~~~-------~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 312 (343)
T 2xzm_R 241 DILNLTYPQREF-------DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC 312 (343)
T ss_dssp ESSCCSSCSEEE-------ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE
T ss_pred ECCCCcccceee-------cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce
Confidence 97 332 22222 112347899999999877655 57789999953 33222 22100 0012455678
Q ss_pred ceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 296 EGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 296 ~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.+++|+|+|+++++++.|+.|++|
T Consensus 313 ~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 313 TSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEECSSSCCEEEEETTSEEEEE
T ss_pred EEEEECCCCCeEEEecCCceEEEE
Confidence 999999999999999999999998
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=5.8e-29 Score=199.84 Aligned_cols=262 Identities=12% Similarity=0.148 Sum_probs=211.2
Q ss_pred cccccccCCCccchhccccceeeeecccCCCC-------------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-------------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFD 87 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~ 87 (319)
...|.+++++|++.++..+. +..+..|+... ++...+.+++++|+++++++++.++.|++ |+
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~----~d 125 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI----WD 125 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE----EE
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE----EE
Confidence 56789999999999999887 77777775432 34466889999999999999999999999 88
Q ss_pred cccce--eeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE
Q psy13998 88 LKTNC--VFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160 (319)
Q Consensus 88 ~~~~~--~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 160 (319)
..+.. .... ...+.+++++|+++++++++.++.|.+|| .+++.+..+ ..+...+.+++++|++++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF------QGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEE
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee------ecccCceEEEEECCCCCEEE
Confidence 86554 2222 23568899999999999999999999999 566666666 34567789999999999999
Q ss_pred EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCC
Q psy13998 161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS 240 (319)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (319)
+++.++.|.+||++.. +.+..+. +...+.+++++|++++++++..++.|++|+........+
T Consensus 200 ~~~~dg~i~~~d~~~~------~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~----- 261 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREG------RQLQQHD-------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL----- 261 (337)
T ss_dssp EEETTSEEEEEETTTT------EEEEEEE-------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-----
T ss_pred EEecCCcEEEEECCCC------ceEeeec-------CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE-----
Confidence 9999999999998753 3333321 234578899999999999999999999999765555555
Q ss_pred CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 241 EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 241 ~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
..+...+.+++++|+++++++++.++.|++|+. .++.+... .+...+.+++++|+++++++++.|+.|++|
T Consensus 262 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 262 -HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-------KESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred -cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-------cCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 455667899999999999999999999999994 56665444 355679999999999999999999999998
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1.4e-28 Score=197.97 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=191.2
Q ss_pred CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998 51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQS 126 (319)
Q Consensus 51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~~ 126 (319)
..+|...+.+++|+|+++++++++.|+.|++ |+..+......+. .+.+++++|+++++++++.++.|++|+.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~i----Wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLII----WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEE----EETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEE----EECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 4578899999999999999999999999999 8887666555333 5688999999999999999999999994
Q ss_pred CC-----cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998 127 DG-----TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP 201 (319)
Q Consensus 127 ~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (319)
.. .....+ .+|...+.++.+.+++. +++++.++.|++||+... +.+..+ ..+...+
T Consensus 127 ~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~------~~~~~~------~~h~~~v 187 (340)
T 1got_B 127 KTREGNVRVSREL------AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG------QQTTTF------TGHTGDV 187 (340)
T ss_dssp TTCSBSCEEEEEE------ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT------EEEEEE------CCCSSCE
T ss_pred ccCCCcceeEEEe------cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC------cEEEEE------cCCCCce
Confidence 32 223333 45667788899988776 677788999999998743 444444 3455678
Q ss_pred eeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceE
Q psy13998 202 HYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFL 279 (319)
Q Consensus 202 ~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~ 279 (319)
.+++++|+++++++++.++.|++||. ++.....+ .++...+.+++++|+++++++++.|+.|++||. .++.+
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 261 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 89999999999999999999999995 56777777 566677899999999999999999999999995 55655
Q ss_pred EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 280 RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
..+.. ..+...+.+++|+|+|+++++++.|+.|++|
T Consensus 262 ~~~~~----~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vw 297 (340)
T 1got_B 262 MTYSH----DNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297 (340)
T ss_dssp EEECC----TTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEcc----CCcccceEEEEECCCCCEEEEECCCCeEEEE
Confidence 55521 2233468999999999999999999999998
No 22
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.97 E-value=1.7e-29 Score=218.54 Aligned_cols=275 Identities=14% Similarity=0.160 Sum_probs=208.1
Q ss_pred cccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
......++|+|++++++.+.. ..+..|... .+|...+.+++|+|+|+++++++.|++|++ |+..+..
T Consensus 18 ~g~~~~~~~spdg~~l~~~~~-~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~l----Wd~~~~~ 92 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRI----WDTTQTT 92 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEET-TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE----EESSSTT
T ss_pred cCceeEEeeCCCCCEEEeCCC-CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEE----eECCCCc
Confidence 456778899999999887653 244444332 467788999999999999999999999999 8875322
Q ss_pred e--eE----EecCceeeEEcCCCcEEEEcCCC----CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEE
Q psy13998 93 V--FL----AFTWPRGIAVGPDNSIVVADSSN----HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVS 161 (319)
Q Consensus 93 ~--~~----~~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~ 161 (319)
. .. +-..+.+++|+|+++.+++.+.+ +.|++|+. ++....+ .+|...+.+++|+|++. .+++
T Consensus 93 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~l------~gh~~~v~~v~f~p~~~~~l~s 165 (611)
T 1nr0_A 93 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNL------TGQARAMNSVDFKPSRPFRIIS 165 (611)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCC------CCCSSCEEEEEECSSSSCEEEE
T ss_pred ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CCCccee------cCCCCCceEEEECCCCCeEEEE
Confidence 1 11 22367899999999887776543 47889983 3333333 56778899999999885 6899
Q ss_pred eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCC-CC
Q psy13998 162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGS-EG 239 (319)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~-~~ 239 (319)
++.|+.|++|+.... +....+ ..|...+.+++|+|+|+++++++.|+.|++||. +++....+.. ..
T Consensus 166 ~s~D~~v~lwd~~~~------~~~~~l------~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 166 GSDDNTVAIFEGPPF------KFKSTF------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp EETTSCEEEEETTTB------EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred EeCCCeEEEEECCCC------eEeeee------ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 999999999997642 344444 456677899999999999999999999999995 6776666521 11
Q ss_pred CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeeccc---------------------------------
Q psy13998 240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCW--------------------------------- 285 (319)
Q Consensus 240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~--------------------------------- 285 (319)
...+|...+.+++|+|+|+++++++.|+.|++||. +++.+..+...
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 11256677899999999999999999999999995 45554433210
Q ss_pred ----CCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 286 ----GSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 286 ----~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
....+|...+.+++++|||+++++++.|+.|++|
T Consensus 314 ~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W 351 (611)
T 1nr0_A 314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351 (611)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 0013567789999999999999999999999998
No 23
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.97 E-value=1.9e-28 Score=196.13 Aligned_cols=255 Identities=20% Similarity=0.324 Sum_probs=195.7
Q ss_pred ccCCCCCcCCCCcceEEcCCCcEEEEeCCC------------------------CeEEEeccccccccceeeEE-----e
Q psy13998 47 SRGSEPGCFTWPRGIAVGPDNSIVVADSSN------------------------HRVQVCFPHFDLKTNCVFLA-----F 97 (319)
Q Consensus 47 ~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~------------------------~~v~~~~~~~~~~~~~~~~~-----~ 97 (319)
.|-.....+..|.+|+++++|++|++++.+ ++|.+ |+..++..... +
T Consensus 15 ~wp~~~~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~d~~~g~~~~~~~~~~~ 90 (329)
T 3fvz_A 15 DWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILV----IDPNNAEILQSSGKNLF 90 (329)
T ss_dssp TCGGGGCCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEE----ECTTTCCEEEEECTTTC
T ss_pred CCchhceecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEE----EECCCCeEEeccCCCcc
Confidence 343345567899999999999999999877 46888 88765555443 3
Q ss_pred cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc--EEEEecCC---CccCCCCCCceeEEEeC-CCeEEEEeC-CCCEEEE
Q psy13998 98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT--FVGKFGSM---GNKAGQLEHPHYIAVSN-TNRVIVSDS-NNHRVQI 170 (319)
Q Consensus 98 ~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~l~~~~-~g~~~~~~~-~~~~i~~ 170 (319)
..|.+++++++|++|+++..+++|++|+.+++ .+..+... +....+...|.++++++ ++++|++++ .++.|.+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 48999999999999999999999999998876 45555321 22234567899999999 899999997 7999999
Q ss_pred EecCCceeeecCceeeeecccCC----cCCCCCCceeEEEcCC-CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCccc
Q psy13998 171 FDVNGRVFQSDGTFVGKFGSMGN----KAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQ 244 (319)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~ 244 (319)
|+.++. ++..+...+. ....+..|.+++++++ +++|+++..+++|++|+.+ |+.+..+.... .
T Consensus 171 ~~~~g~-------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~----~ 239 (329)
T 3fvz_A 171 FSPSGK-------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS----F 239 (329)
T ss_dssp ECTTSC-------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT----T
T ss_pred EcCCCC-------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc----c
Confidence 997764 3333332221 1345667999999998 8999999999999999987 88888774322 2
Q ss_pred ccCcceEEEcC------CCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998 245 LKFPRGVAVDD------QGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317 (319)
Q Consensus 245 ~~~~~~i~~~~------~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~ 317 (319)
...+.+++++| +|++|+++..+.+|.+|+ .+|+.+..++. ...+...|.+|+++++|.+|+++..+++|+
T Consensus 240 ~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~---~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 240 GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP---VRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC---SSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred CCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC---CCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 23456677777 555566666677999999 67888887742 135677899999999999999999999998
Q ss_pred eC
Q psy13998 318 VF 319 (319)
Q Consensus 318 v~ 319 (319)
+|
T Consensus 317 ~~ 318 (329)
T 3fvz_A 317 KF 318 (329)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=7.6e-28 Score=193.32 Aligned_cols=263 Identities=11% Similarity=0.116 Sum_probs=201.3
Q ss_pred cccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
...+..++++|++++++..........+... .+|-..+.+++++|+++++++++ ++.|++ |+..+.+
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~i----w~~~~~~ 83 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKV----WDISHPG 83 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEE----EETTSTT
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEE----EECCCCC
Confidence 4568889999999987655422222222111 24667899999999999999988 999999 7776543
Q ss_pred ee---E------EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC-Cc--EEEEecCCCccCCCCCCceeEEEeCCCeEEE
Q psy13998 93 VF---L------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD-GT--FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160 (319)
Q Consensus 93 ~~---~------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 160 (319)
.. . +...+.+++++|+++++++++.++.|.+|+.. ++ ....+ ..+...+.++++++++++++
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL------TSSAPACYALAISPDSKVCF 157 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE------ECSSSCEEEEEECTTSSEEE
T ss_pred ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec------ccCCCceEEEEECCCCCEEE
Confidence 21 1 22356889999999999999999999999944 43 23333 34456678999999999999
Q ss_pred EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCC
Q psy13998 161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEG 239 (319)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~ 239 (319)
+++.++.|.+||++.. +.+..+ ..+...+.+++++|+++++++++.++.|++||.. ++.+..+
T Consensus 158 ~~~~dg~v~~~d~~~~------~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---- 221 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQ------TLVRQF------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---- 221 (337)
T ss_dssp EEETTSCEEEEETTTT------EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred EEeCCCcEEEEeCCCC------ceeeee------ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee----
Confidence 9999999999998753 344444 2345668899999999999999999999999965 4444444
Q ss_pred CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.+...+.+++++|+++++++++.++.|++|+........+ ..+...+.+++++|+++++++++.++.|++|
T Consensus 222 ---~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 222 ---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp ---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ---cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE------cCCccceeEEEECCCCCEEEEecCCCcEEEE
Confidence 2334578899999999999999999999999655444444 4677789999999999999999999999997
No 25
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.97 E-value=1.6e-28 Score=212.53 Aligned_cols=292 Identities=14% Similarity=0.148 Sum_probs=217.9
Q ss_pred hhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCCC----------CcCCCCcceEEcCCCcEEEEe
Q psy13998 6 EAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP----------GCFTWPRGIAVGPDNSIVVAD 73 (319)
Q Consensus 6 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~g~~~~~~ 73 (319)
..+++.++.....+. ...|.+++|+|++.++++++.+..+.+|+... +|...+.+++|+|+|+.++++
T Consensus 42 ~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~ 121 (611)
T 1nr0_A 42 YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV 121 (611)
T ss_dssp EEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred EEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEE
Confidence 345666555555554 57799999999999999999888888887532 345678999999999988877
Q ss_pred CCC----CeEEEeccccccccce--eeEEecCceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCC
Q psy13998 74 SSN----HRVQVCFPHFDLKTNC--VFLAFTWPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLE 145 (319)
Q Consensus 74 ~~~----~~v~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~ 145 (319)
+.+ +.|++ |+..+.. ...+...+.+++|+|++. .+++++.|+.|++|+ ..++....+ .+|..
T Consensus 122 ~~~~~~~~~v~~----wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l------~~H~~ 191 (611)
T 1nr0_A 122 GEGRERFGHVFL----FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF------GEHTK 191 (611)
T ss_dssp ECCSSCSEEEEE----TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE------CCCSS
T ss_pred ECCCCceeEEEE----eeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee------ccccC
Confidence 654 47888 7753211 111344678999999986 689999999999999 556666666 56778
Q ss_pred CceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc-cCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEE
Q psy13998 146 HPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS-MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI 224 (319)
Q Consensus 146 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~ 224 (319)
.+.+++|+|+|+++++++.|+.|++||.... +.+..+.. ......|...+.+++++|+++++++++.++.|++
T Consensus 192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~l 265 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDG------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 265 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEECCCcEEEEECCCC------cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 8999999999999999999999999997632 33333311 1111246677899999999999999999999999
Q ss_pred EeCC-CCEEEEeCCCC-------------------------------------CCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998 225 FDVN-GRVITSFGSEG-------------------------------------SEEGQLKFPRGVAVDDQGYISVGDSGN 266 (319)
Q Consensus 225 ~~~~-~~~~~~~~~~~-------------------------------------~~~~~~~~~~~i~~~~~g~~~v~~~~~ 266 (319)
||.. ++.+..+.... ...+|...+.+++++|+|+++++++.|
T Consensus 266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D 345 (611)
T 1nr0_A 266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE 345 (611)
T ss_dssp EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 9964 54444332100 002455668899999999999999999
Q ss_pred CEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 267 NRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 267 ~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+.|++||. +++....+. ..|...+.++++++++. +++++.|+.+++|
T Consensus 346 ~~v~~Wd~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~-l~s~s~d~~v~~w 393 (611)
T 1nr0_A 346 GHINSWDISTGISNRVFP-----DVHATMITGIKTTSKGD-LFTVSWDDHLKVV 393 (611)
T ss_dssp SCEEEEETTTCCEEECSS-----CSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred CcEEEEECCCCceeeecc-----cCCcceEEEEEECCCCc-EEEEEcCCceEEe
Confidence 99999995 455544432 35677899999998764 6677788899887
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=4.7e-28 Score=212.76 Aligned_cols=273 Identities=14% Similarity=0.176 Sum_probs=209.5
Q ss_pred cccccccCCCccc-hhccccceeeeecccCCC-------------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccc
Q psy13998 21 VSGIGQVGTTPRS-QYLQKRRLQFKIGSRGSE-------------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHF 86 (319)
Q Consensus 21 ~~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~ 86 (319)
.+.|.+++++|++ .++.+++.+..+.+|... .+|...+.+++++|+|+++++++.|+.|++ |
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v----w 457 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL----W 457 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE----E
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE----E
Confidence 5678899999865 678899888888888532 356678999999999999999999999999 9
Q ss_pred ccccceeeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCC--eEEE
Q psy13998 87 DLKTNCVFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN--RVIV 160 (319)
Q Consensus 87 ~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g--~~~~ 160 (319)
++.+...... ...+.+++++|+++.+++++.|+.|++||..+.....+... ..+|...+.+++++|++ ..++
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEE
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEE
Confidence 8877665553 34678999999999999999999999999766554444222 13566778999999976 6789
Q ss_pred EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCC
Q psy13998 161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEG 239 (319)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~ 239 (319)
+++.++.|++||++.. +....+ ..|...+.+++++|+++++++++.++.|++||. +++.+..+.
T Consensus 536 s~s~d~~v~vwd~~~~------~~~~~~------~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--- 600 (694)
T 3dm0_A 536 SASWDKTVKVWNLSNC------KLRSTL------AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--- 600 (694)
T ss_dssp EEETTSCEEEEETTTC------CEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB---
T ss_pred EEeCCCeEEEEECCCC------cEEEEE------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec---
Confidence 9999999999999753 344433 445667889999999999999999999999996 455544431
Q ss_pred CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCC-------------CCCCCCCcceEEEccCCc
Q psy13998 240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGS-------------GDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~g~ 305 (319)
....+.+++++|++.+++++. ++.|++||. .++.+..+..... ...+...+.+++|+|||+
T Consensus 601 ----~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~ 675 (694)
T 3dm0_A 601 ----ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS 675 (694)
T ss_dssp ----CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS
T ss_pred ----CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC
Confidence 223578899999988777764 577999995 4555554421100 011122367899999999
Q ss_pred EEEEeCCCCeEEeC
Q psy13998 306 ILVCDRENHRIQVF 319 (319)
Q Consensus 306 ~~v~~~~~~~i~v~ 319 (319)
++++++.|+.|++|
T Consensus 676 ~l~sgs~Dg~i~iW 689 (694)
T 3dm0_A 676 TLFSGYTDGVIRVW 689 (694)
T ss_dssp EEEEEETTSEEEEE
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999998
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.3e-29 Score=204.78 Aligned_cols=294 Identities=8% Similarity=0.071 Sum_probs=218.4
Q ss_pred hhhccchhhh---hhhhhh-cccccccCCCccchhccccceeeeecccCCCC------------CcCCCCcceEEcCC-C
Q psy13998 5 SEAKNINSCF---LLQTLL-VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP------------GCFTWPRGIAVGPD-N 67 (319)
Q Consensus 5 ~~~~~~~~~~---~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~-g 67 (319)
.+.+++.++. ++..+. ...|..++|+|++.+++++..+..+..|.... +|...+.+++|+|+ +
T Consensus 47 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 126 (416)
T 2pm9_A 47 LELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD 126 (416)
T ss_dssp CEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSST
T ss_pred EEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCC
Confidence 3456666554 233332 56799999999999999987777666665433 35578899999998 8
Q ss_pred cEEEEeCCCCeEEEeccccccccce------eeE-------EecCceeeEEcCC-CcEEEEcCCCCeEEEEc-CCCcEEE
Q psy13998 68 SIVVADSSNHRVQVCFPHFDLKTNC------VFL-------AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQ-SDGTFVG 132 (319)
Q Consensus 68 ~~~~~~~~~~~v~~~~~~~~~~~~~------~~~-------~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~-~~~~~~~ 132 (319)
+++++++.++.|++ |+..+.. ... +...+.+++++|+ +.++++++.++.|++|| ..++.+.
T Consensus 127 ~~l~s~~~dg~v~i----wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 127 NVLASGGNNGEIFI----WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI 202 (416)
T ss_dssp TBEEEECSSSCEEB----CBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE
T ss_pred CEEEEEcCCCeEEE----EECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce
Confidence 89999999999999 8886654 211 2346789999998 68999999999999999 5666776
Q ss_pred EecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCC---EEEEEecCCceeeecCceeeeecccCCcC-CCCCCceeEEEc
Q psy13998 133 KFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNH---RVQIFDVNGRVFQSDGTFVGKFGSMGNKA-GQLEHPHYIAVS 207 (319)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 207 (319)
.+.......++...+.+++++|++ .++++++.++ .|++||++.. ...+..+ . .+...+.+++++
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~-----~~~~~~~------~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA-----NTPLQTL------NQGHQKGILSLDWC 271 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST-----TSCSBCC------CSCCSSCEEEEEEC
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC-----CCCcEEe------ecCccCceeEEEeC
Confidence 664432222335678999999987 6888888888 9999998742 0222222 2 455678899999
Q ss_pred C-CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcCC-CceEEeec
Q psy13998 208 N-TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPD-GQFLRAFG 283 (319)
Q Consensus 208 ~-~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~~-g~~~~~~~ 283 (319)
| +++++++++.++.|++||. +++.+..+ ..+...+.+++|+|++ .++++++.++.|++|+.. ++......
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 345 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQF------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQ 345 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCCEEEEE------ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCccceee------cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccc
Confidence 9 8899999999999999995 56777777 4566678999999998 899999999999999953 22111100
Q ss_pred c-----------------------------cCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 284 C-----------------------------WGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 284 ~-----------------------------~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
. ......+...+.+++|+|+|+++++++.|+.|++|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w 410 (416)
T 2pm9_A 346 ETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT 410 (416)
T ss_dssp ---------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred cccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence 0 00001134456699999999999999999999998
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-28 Score=201.43 Aligned_cols=274 Identities=9% Similarity=0.133 Sum_probs=209.6
Q ss_pred cccccccCCCccch-hcccc----------ceeeeecccCCCCC----------cCCCCcceEEcCCCcEEEEeCCCCeE
Q psy13998 21 VSGIGQVGTTPRSQ-YLQKR----------RLQFKIGSRGSEPG----------CFTWPRGIAVGPDNSIVVADSSNHRV 79 (319)
Q Consensus 21 ~~~i~~~~~~~~~~-~l~~~----------~~~~~~~~~~~~~~----------~~~~~~~v~~~~~g~~~~~~~~~~~v 79 (319)
...+.+++|+|++. +++++ +.+..+.+|....+ |...+.+++|+|+++++++++.++.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence 46788999999987 78887 55666666654322 34678899999999999999999999
Q ss_pred EEecccccccc----ceeeE----EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCC-Cc------EEEEecCCCccCCC
Q psy13998 80 QVCFPHFDLKT----NCVFL----AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSD-GT------FVGKFGSMGNKAGQ 143 (319)
Q Consensus 80 ~~~~~~~~~~~----~~~~~----~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~-~~------~~~~~~~~~~~~~~ 143 (319)
++ |+..+ ..... +...+.+++++|+ ++++++++.++.|++||.. ++ ..... .....+
T Consensus 92 ~v----w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~ 164 (416)
T 2pm9_A 92 EL----YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP---GQSMSS 164 (416)
T ss_dssp EE----ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC---CCSCCS
T ss_pred EE----eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc---ccccCC
Confidence 99 88765 22333 2336789999998 7899999999999999943 33 11111 111345
Q ss_pred CCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCC-
Q psy13998 144 LEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNH- 220 (319)
Q Consensus 144 ~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~- 220 (319)
...+.+++++++ +.++++++.++.|++||++.. +.+..+........+...+.+++++|++ .++++++.++
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 677899999998 789999999999999999853 3444443222112235668899999987 6888888888
Q ss_pred --eEEEEeCCC--CEEEEeCCCCCCc-ccccCcceEEEcC-CCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCC
Q psy13998 221 --RVQIFDVNG--RVITSFGSEGSEE-GQLKFPRGVAVDD-QGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFK 293 (319)
Q Consensus 221 --~i~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~ 293 (319)
.|++||... .....+ . ++...+.+++++| +++++++++.++.|++|+ .+++.+..+ ..+..
T Consensus 239 ~~~i~~~d~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~------~~~~~ 306 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTL------NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF------PARGN 306 (416)
T ss_dssp SCCCCEEETTSTTSCSBCC------CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE------ECSSS
T ss_pred CceEEEEeCCCCCCCcEEe------ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee------cCCCC
Confidence 999999653 333333 3 4566789999999 889999999999999999 567788777 56778
Q ss_pred CcceEEEccCC-cEEEEeCCCCeEEeC
Q psy13998 294 GLEGVAVMSNG-NILVCDRENHRIQVF 319 (319)
Q Consensus 294 ~~~~l~~~~~g-~~~v~~~~~~~i~v~ 319 (319)
.+.+++|+|++ .++++++.|+.|++|
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEE
Confidence 89999999999 799999999999998
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=3.7e-27 Score=187.49 Aligned_cols=235 Identities=14% Similarity=0.257 Sum_probs=186.2
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S 126 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~ 126 (319)
.+|...+.+++|+|+|+++++++.|+.|++ |+..+......+ ..+.+++++|+++++++++.++.|++|| .
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~i----w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 95 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKI----WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 95 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEE----EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEE----EeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence 477889999999999999999999999999 887665554433 3578999999999999999999999999 5
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
+++.+..+ .++...+.+++++|+++++++++.++.|++||++.. +.+..+ ..+...+.++++
T Consensus 96 ~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~------~~~~~~v~~~~~ 157 (312)
T 4ery_A 96 SGKCLKTL------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------KCLKTL------PAHSDPVSAVHF 157 (312)
T ss_dssp TCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------CEEEEE------CCCSSCEEEEEE
T ss_pred CCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------EEEEEe------cCCCCcEEEEEE
Confidence 67777766 456677899999999999999999999999998743 444444 334456788999
Q ss_pred cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecc
Q psy13998 207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGC 284 (319)
Q Consensus 207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~ 284 (319)
+++++++++++.++.|++||. +++.+..+. ..+...+..++++|+++++++++.++.|++||. +++.+..+
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 230 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLI-----DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-- 230 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE--
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeEEe-----ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--
Confidence 999999999999999999996 456655552 122334678999999999999999999999994 66767666
Q ss_pred cCCCCCCCCCc--ceEEE-ccCCcEEEEeCCCCeEEeC
Q psy13998 285 WGSGDGEFKGL--EGVAV-MSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 285 ~~~~~~~~~~~--~~l~~-~~~g~~~v~~~~~~~i~v~ 319 (319)
.++.... ....+ .+++.++++++.|+.|++|
T Consensus 231 ----~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vw 264 (312)
T 4ery_A 231 ----TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264 (312)
T ss_dssp ----CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEE
T ss_pred ----EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEE
Confidence 2332222 22233 3677899999999999998
No 30
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.5e-27 Score=191.93 Aligned_cols=280 Identities=16% Similarity=0.218 Sum_probs=208.9
Q ss_pred hhhhhhhhh--cccccccCCCcc-chhccccceeeeecccCCC-------------CCcCCCCcceEEcCCCcEEEEeCC
Q psy13998 12 SCFLLQTLL--VSGIGQVGTTPR-SQYLQKRRLQFKIGSRGSE-------------PGCFTWPRGIAVGPDNSIVVADSS 75 (319)
Q Consensus 12 ~~~~~~~~~--~~~i~~~~~~~~-~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~g~~~~~~~~ 75 (319)
++.+..++. ...|.+++|+|+ +.++++++.+.++.+|+.. .+|...+.+++|+|+|+++++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 344444444 678999999997 5789999988888888532 345678899999999999999999
Q ss_pred CCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEE
Q psy13998 76 NHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 151 (319)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (319)
|+.|++ |+.......... .....+.+.++++.+++++.++.+.+|+..+........ ..+...+..++
T Consensus 107 d~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~----~~~~~~v~~~~ 178 (340)
T 4aow_A 107 DGTLRL----WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD----ESHSEWVSCVR 178 (340)
T ss_dssp TSEEEE----EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS----SSCSSCEEEEE
T ss_pred cccceE----EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe----ccccCcccceE
Confidence 999999 777655544422 245677888889999999999999999965544333322 34556778888
Q ss_pred EeCCC--eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-
Q psy13998 152 VSNTN--RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN- 228 (319)
Q Consensus 152 ~~~~g--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~- 228 (319)
+.+++ .++++++.++.|++||+... +.+..+ ..+...+.+++++|+++++++++.++.|++||..
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~------~~~~~~------~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANC------KLKTNH------IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTT------EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCC------ceeeEe------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 88754 67888889999999999853 444444 3455678899999999999999999999999965
Q ss_pred CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC-ceEEeeccc---CCCCCCCCCcceEEEccCC
Q psy13998 229 GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG-QFLRAFGCW---GSGDGEFKGLEGVAVMSNG 304 (319)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~---~~~~~~~~~~~~l~~~~~g 304 (319)
.+.+..+. ....+..++++|++.++++ +.++.|++|+..+ ..+..+... .....+...+.+++|+|||
T Consensus 247 ~~~~~~~~-------~~~~v~~~~~~~~~~~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 247 GKHLYTLD-------GGDIINALCFSPNRYWLCA-ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp TEEEEEEE-------CSSCEEEEEECSSSSEEEE-EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred Cceeeeec-------CCceEEeeecCCCCceeec-cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 44455441 2235788999998776554 5689999999654 344443211 1123566789999999999
Q ss_pred cEEEEeCCCCeEEeC
Q psy13998 305 NILVCDRENHRIQVF 319 (319)
Q Consensus 305 ~~~v~~~~~~~i~v~ 319 (319)
+++++++.|+.|++|
T Consensus 319 ~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 319 QTLFAGYTDNLVRVW 333 (340)
T ss_dssp SEEEEEETTSCEEEE
T ss_pred CEEEEEeCCCEEEEE
Confidence 999999999999998
No 31
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4.4e-28 Score=201.53 Aligned_cols=273 Identities=14% Similarity=0.129 Sum_probs=198.4
Q ss_pred ccccccCCCcc-chhccccceeeeecccCCC----------CCcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccc
Q psy13998 22 SGIGQVGTTPR-SQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLK 89 (319)
Q Consensus 22 ~~i~~~~~~~~-~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~ 89 (319)
..|.+++|+|. +.++++++.+..+.+|+.. .+|...|.+|+|+| +++++++++.|++|++ ||+.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i----wd~~ 195 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL----QDFK 195 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE----EETT
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE----eecc
Confidence 45899999994 5688899888888887543 35667899999998 7889999999999999 8886
Q ss_pred cceeeEEe------cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEe
Q psy13998 90 TNCVFLAF------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSD 162 (319)
Q Consensus 90 ~~~~~~~~------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~ 162 (319)
+....... ....+++++++++++++++.++.|++||.+++.+..+ .+|...+.+++|+|++. +++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~------~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNL------RMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCS------BCCSSCEEEEEECTTCSSEEEEE
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEE------ecccceEEeeeecCCCceEEEEe
Confidence 54332211 1346789999999999999999999999877765544 45667889999999774 78888
Q ss_pred CCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCC
Q psy13998 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSE 241 (319)
Q Consensus 163 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~ 241 (319)
+.|+.|++||+... +....+ .....|...+.+++|+|+|.++++++.++.|++||. ++.....+......
T Consensus 270 s~d~~v~iwd~~~~------~~~~~~---~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 340 (435)
T 4e54_B 270 SVDQTVKIWDLRQV------RGKASF---LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340 (435)
T ss_dssp ETTSBCCEEETTTC------CSSSCC---SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC
T ss_pred cCcceeeEEecccc------cccceE---EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc
Confidence 99999999998742 111111 011345566788999999999999999999999995 45555444222111
Q ss_pred cccccCcceEEEcCCCcEEEEeC------------CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceE-EEccCCcEE
Q psy13998 242 EGQLKFPRGVAVDDQGYISVGDS------------GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGV-AVMSNGNIL 307 (319)
Q Consensus 242 ~~~~~~~~~i~~~~~g~~~v~~~------------~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~~g~~~ 307 (319)
......+....+++++.+++++. .++.|++|+ .+|+.+..+. ..+...+.++ +|+|+|+++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-----~~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 341 HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-----DPESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-----CSSCCCCCCEEEECTTSSCE
T ss_pred ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-----CCCCCcEEEEEEECCCCCEE
Confidence 11112234456666665544443 335799999 5677777652 2455667777 699999999
Q ss_pred EEeCCCCeEEeC
Q psy13998 308 VCDRENHRIQVF 319 (319)
Q Consensus 308 v~~~~~~~i~v~ 319 (319)
++++ |+.|++|
T Consensus 416 asg~-d~~i~iW 426 (435)
T 4e54_B 416 ASAM-GYHILIW 426 (435)
T ss_dssp EEEC-SSEEEEC
T ss_pred EEEc-CCcEEEE
Confidence 8876 7789999
No 32
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=1.2e-27 Score=190.72 Aligned_cols=234 Identities=14% Similarity=0.274 Sum_probs=185.6
Q ss_pred CCCCCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccce-----eeE----EecCceeeEEcCCCcEEEEcCCC
Q psy13998 49 GSEPGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNC-----VFL----AFTWPRGIAVGPDNSIVVADSSN 118 (319)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~----~~~~~~~l~~~~~g~~~~~~~~~ 118 (319)
+...||...|.+++++|++ +++++++.|++|++ |+..... ... |...+.+++++++++++++++.|
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~----W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLIS----WKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE----EEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEE----ecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 3456889999999999965 79999999999999 7764321 112 23467889999999999999999
Q ss_pred CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998 119 HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197 (319)
Q Consensus 119 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (319)
+.|++|| .+++.+..+ .+|...+.++++++++.++++++.|+.|++|++++. .+..+ ..+
T Consensus 87 ~~v~~wd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-------~~~~~------~~h 147 (319)
T 3frx_A 87 KTLRLWDVATGETYQRF------VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-------CLATL------LGH 147 (319)
T ss_dssp SEEEEEETTTTEEEEEE------ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-------EEEEE------CCC
T ss_pred CEEEEEECCCCCeeEEE------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------eEEEE------ecc
Confidence 9999999 677777776 567778899999999999999999999999999753 23333 334
Q ss_pred CCCceeEEEcCC------CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEE
Q psy13998 198 LEHPHYIAVSNT------NRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270 (319)
Q Consensus 198 ~~~~~~~~~~~~------g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~ 270 (319)
...+..+++.|. +.++++++.++.|++||.. ++....+ .++...+.+++++|+|+++++++.|+.|+
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------~~h~~~v~~~~~sp~g~~l~s~~~dg~i~ 221 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF------IGHNSNINTLTASPDGTLIASAGKDGEIM 221 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE------CCCCSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee------cCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 456677888774 4588999999999999965 4555555 56667789999999999999999999999
Q ss_pred EEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 271 IFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 271 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+||. .++.+..+. ....+.+++|+|++.+++++..+ .+++|
T Consensus 222 iwd~~~~~~~~~~~-------~~~~v~~~~~sp~~~~la~~~~~-~i~v~ 263 (319)
T 3frx_A 222 LWNLAAKKAMYTLS-------AQDEVFSLAFSPNRYWLAAATAT-GIKVF 263 (319)
T ss_dssp EEETTTTEEEEEEE-------CCSCEEEEEECSSSSEEEEEETT-EEEEE
T ss_pred EEECCCCcEEEEec-------CCCcEEEEEEcCCCCEEEEEcCC-CcEEE
Confidence 9995 566666662 23568999999999988877654 46665
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=1.5e-27 Score=192.85 Aligned_cols=237 Identities=16% Similarity=0.212 Sum_probs=188.9
Q ss_pred CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998 51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQS 126 (319)
Q Consensus 51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~ 126 (319)
..||...+.+++|+|+++++++++.|++|++ |+..+......+ ..+.+++++|+|..+++++.++.+.+|+.
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~v----Wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIV----WDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEE----EETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEE----EECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 4578899999999999999999999999999 887665554433 35688999999999999999999999984
Q ss_pred CCc-------EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998 127 DGT-------FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE 199 (319)
Q Consensus 127 ~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (319)
... ....+ ..|...+.++++++++..+++++.|+.|++||++.. +.+..+ ..+..
T Consensus 136 ~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~------~~~~~~------~~h~~ 197 (354)
T 2pbi_B 136 TFDKNENMAAKKKSV------AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG------QLLQSF------HGHGA 197 (354)
T ss_dssp CCCTTCCSGGGCEEE------EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEE------ECCSS
T ss_pred eccccccccccceee------eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC------eEEEEE------cCCCC
Confidence 211 11122 345677889999999999999999999999998743 444444 33445
Q ss_pred CceeEEEcC--CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-C
Q psy13998 200 HPHYIAVSN--TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-D 275 (319)
Q Consensus 200 ~~~~~~~~~--~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~ 275 (319)
.+.++++.+ +++++++++.++.|++||. +++.+..+ ..+...+.+++++|++.++++++.|+.|++||. .
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 667788876 5689999999999999995 56777777 566677899999999999999999999999995 4
Q ss_pred CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
++.+..+.. ......+.+++|+|+|+++++++.|+.|++|
T Consensus 272 ~~~~~~~~~----~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 272 DREVAIYSK----ESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp TEEEEEECC----TTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CcEEEEEcC----CCcccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence 555544421 2233467899999999999999999999998
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-28 Score=196.24 Aligned_cols=266 Identities=13% Similarity=0.121 Sum_probs=193.7
Q ss_pred cccccccCCCccchhccccceeeeecccCCC-----------CC-cCCCCcceEEcCCCcEEEEeCCCCeEEEecccccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-----------PG-CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL 88 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~-~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~ 88 (319)
...|.+++++|+ ++++++.+.++.+|+.. .+ |...+.+++|+|+++++++++.|+.|++ |+.
T Consensus 14 ~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i----w~~ 87 (330)
T 2hes_X 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI----WAK 87 (330)
T ss_dssp SSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE----EEC
T ss_pred CCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE----EEc
Confidence 567888888886 88888877776666432 22 6667899999999999999999999999 766
Q ss_pred ccc-------eeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CC----cEEEEecCCCccCCCCCCceeEEE
Q psy13998 89 KTN-------CVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DG----TFVGKFGSMGNKAGQLEHPHYIAV 152 (319)
Q Consensus 89 ~~~-------~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~l~~ 152 (319)
... .... +...+.+++|+|+++++++++.|+.|++||. .. +.+..+ .+|...+.++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~------~~h~~~v~~v~~ 161 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL------QEHSQDVKHVIW 161 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE------CCCSSCEEEEEE
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe------ccCCCceEEEEE
Confidence 321 1122 3346789999999999999999999999995 32 234444 456678899999
Q ss_pred eCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC--CcEEEEeCCCCeEEEEeCCCC
Q psy13998 153 SNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGR 230 (319)
Q Consensus 153 ~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~v~~~~~~~i~~~~~~~~ 230 (319)
+|++.++++++.|+.|++|+..... .+.+..+ ..|...+.+++++|+ +.++++++.++.|++|+....
T Consensus 162 ~p~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~------~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 162 HPSEALLASSSYDDTVRIWKDYDDD----WECVAVL------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp CSSSSEEEEEETTSCEEEEEEETTE----EEEEEEE------CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCC----eeEEEEc------cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 9999999999999999999875321 1223333 345567888999998 678899999999999996421
Q ss_pred ---------EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-Cc--eEEeecccCCCCCCCC-Ccce
Q psy13998 231 ---------VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQ--FLRAFGCWGSGDGEFK-GLEG 297 (319)
Q Consensus 231 ---------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~~-~~~~ 297 (319)
....+. ..+...+.++++++++ ++++++.|+.|++|+.. ++ .+.... ..|.. .+.+
T Consensus 232 ~~~~~~~~~~~~~~~-----~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-----~~h~~~~v~~ 300 (330)
T 2hes_X 232 DEDDQQEWVCEAILP-----DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-----LCHGVYEINV 300 (330)
T ss_dssp CTTSCEEEEEEEECC-----SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-----CTTTTSCEEE
T ss_pred CccccceeEEeeecc-----cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-----cccccceEEE
Confidence 122221 1245578899999765 67888899999999953 42 222221 23444 7899
Q ss_pred EEEcc--CCcEEEEeCCCCeEEeC
Q psy13998 298 VAVMS--NGNILVCDRENHRIQVF 319 (319)
Q Consensus 298 l~~~~--~g~~~v~~~~~~~i~v~ 319 (319)
++|+| +++++++++.|+.|++|
T Consensus 301 v~~~~~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 301 VKWLELNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp EEEC-----CCEEEEETTSEEEEE
T ss_pred EEEecCCCceEEEEecCCCcEEEE
Confidence 99999 68899999999999998
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=7.1e-28 Score=194.14 Aligned_cols=238 Identities=13% Similarity=0.193 Sum_probs=184.7
Q ss_pred CCcCC-CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-------EecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998 52 PGCFT-WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-------AFTWPRGIAVGPDNSIVVADSSNHRVQV 123 (319)
Q Consensus 52 ~~~~~-~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~g~~~~~~~~~~~i~~ 123 (319)
.+|.. .++.++|+|+|+++++++.|+.|++ |+..+..... +...+.+++|+|+++++++++.++.+++
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~i----w~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRI----WGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEE----EEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEE----EEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 35555 7889999999999999999999999 8876554221 2336789999999999999999999999
Q ss_pred EcCC-Cc--EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998 124 FQSD-GT--FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH 200 (319)
Q Consensus 124 ~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (319)
|+.+ +. .+..+ .+|...+.+++|+|+++++++++.|+.|++||++.... ...+..+ ..+...
T Consensus 88 w~~~~~~~~~~~~~------~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~------~~h~~~ 152 (345)
T 3fm0_A 88 WKKNQDDFECVTTL------EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE---YECVSVL------NSHTQD 152 (345)
T ss_dssp EEECCC-EEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC---EEEEEEE------CCCCSC
T ss_pred EEccCCCeEEEEEc------cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC---eEEEEEe------cCcCCC
Confidence 9943 32 34444 56777889999999999999999999999999864210 0112222 345566
Q ss_pred ceeEEEcCCCcEEEEeCCCCeEEEEeCCCC---EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC--C
Q psy13998 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGR---VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP--D 275 (319)
Q Consensus 201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~--~ 275 (319)
+.+++++|+++++++++.++.|++|+.... ....+ .++...+.+++|+|+|+++++++.|+.|++|+. .
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~------~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~ 226 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL------EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe------cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence 788999999999999999999999996433 22344 556677899999999999999999999999983 1
Q ss_pred Cc--------------eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 276 GQ--------------FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 276 g~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+. .+..+. ..|...+.++++++++.++++++.|+.|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw 279 (345)
T 3fm0_A 227 GNEQGVACSGSDPSWKCICTLS-----GFHSRTIYDIAWCQLTGALATACGDDAIRVF 279 (345)
T ss_dssp TCTTCCCCC---CEEEEEEEEC-----SSCSSCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred CCCccceeeccCCccceeEEec-----CCCCCcEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 11 111221 1256679999999999999999999999987
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-27 Score=193.80 Aligned_cols=271 Identities=12% Similarity=0.121 Sum_probs=211.5
Q ss_pred cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
...|.+++|+|++.+++++..+..+..|+... +|...+.+++|+|+++++++++.++.|++ |++.+..
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i----wd~~~~~ 107 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL----WDVSNGQ 107 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE----EETTTCC
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE----EECCCCc
Confidence 57799999999999999998887777776443 45578899999999999999999999999 8887766
Q ss_pred eeEEe---cCceeeEEcCCCcEEEEcCCC-----CeEEEEcC-CCc---EEEEecCC--CccCCCC--CCceeEEEeCCC
Q psy13998 93 VFLAF---TWPRGIAVGPDNSIVVADSSN-----HRVQVFQS-DGT---FVGKFGSM--GNKAGQL--EHPHYIAVSNTN 156 (319)
Q Consensus 93 ~~~~~---~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~-~~~---~~~~~~~~--~~~~~~~--~~~~~l~~~~~g 156 (319)
....+ ..+.+++++|+++.++++..+ +.|.+|+. .+. ........ .....+. ..+.++++++++
T Consensus 108 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (369)
T 3zwl_B 108 CVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG 187 (369)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG
T ss_pred EEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC
Confidence 65543 366889999999988888777 99999993 221 11111000 0001122 277899999999
Q ss_pred eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEe
Q psy13998 157 RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSF 235 (319)
Q Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~ 235 (319)
+++++++.++.|.+||+... +..+..+ ..+...+.+++++|+++++++++.++.|++||. +++.+..+
T Consensus 188 ~~l~~~~~dg~i~i~d~~~~-----~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 188 KYIIAGHKDGKISKYDVSNN-----YEYVDSI------DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp CEEEEEETTSEEEEEETTTT-----TEEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCC-----cEeEEEE------ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence 99999999999999999751 2333333 234456788999999999999999999999996 55666665
Q ss_pred CCCCCCcccccCcceEEEcCCCcEEEEeCCCC--------------EEEEEc-CCCceEEeecccCCCCCCCCCcceEEE
Q psy13998 236 GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN--------------RIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAV 300 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~--------------~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~ 300 (319)
. ....+..++++|++.++++++.++ .+++|+ ..++.+..+ ..+...+.+++|
T Consensus 257 ~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------~~~~~~v~~~~~ 323 (369)
T 3zwl_B 257 E-------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV------QGHFGPLNTVAI 323 (369)
T ss_dssp E-------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE------ECCSSCEEEEEE
T ss_pred c-------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe------ecccCcEEEEEE
Confidence 2 334578899999999888888777 899999 467777777 567788999999
Q ss_pred ccCCcEEEEeCCCCeEEeC
Q psy13998 301 MSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 301 ~~~g~~~v~~~~~~~i~v~ 319 (319)
+|+++++++++.|+.|++|
T Consensus 324 s~~~~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 324 SPQGTSYASGGEDGFIRLH 342 (369)
T ss_dssp CTTSSEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEE
Confidence 9999999999999999998
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-27 Score=197.85 Aligned_cols=269 Identities=10% Similarity=0.089 Sum_probs=204.7
Q ss_pred cccccccCCCccch-hccccceeeeecccCC----CCCc------------------------CCCCcceEEcCCCcEEE
Q psy13998 21 VSGIGQVGTTPRSQ-YLQKRRLQFKIGSRGS----EPGC------------------------FTWPRGIAVGPDNSIVV 71 (319)
Q Consensus 21 ~~~i~~~~~~~~~~-~l~~~~~~~~~~~~~~----~~~~------------------------~~~~~~v~~~~~g~~~~ 71 (319)
...|.+++|+|++. +++++..+..+..|.. ..+. ...+.+++|+|++++++
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 36799999999999 9998877776666655 3332 34789999999999999
Q ss_pred EeCCCCeEEEeccccccccceeeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCc-------
Q psy13998 72 ADSSNHRVQVCFPHFDLKTNCVFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGN------- 139 (319)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~------- 139 (319)
+++.++.|++ |+. +...... ...+.+++++|+++.+++++.++.|++|+ .+++.+..+.....
T Consensus 125 ~~~~dg~i~i----~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 125 TGVENGELRL----WNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEETTSCEEE----EET-TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEeCCCeEEE----EeC-CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 9999999999 874 3333332 33678999999999999999999999999 45655554432111
Q ss_pred -------------------------------------------cCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc
Q psy13998 140 -------------------------------------------KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR 176 (319)
Q Consensus 140 -------------------------------------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~ 176 (319)
...+...+.+++++|+++++++++.++.|++|++...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 0123455677888888888888888888888887642
Q ss_pred eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcC
Q psy13998 177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDD 255 (319)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 255 (319)
+.+..+ ..+...+.+++++|++ ++++++.++.|++||. +++.+..+ ..+...+.+++++|
T Consensus 280 ------~~~~~~------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 280 ------NSQNCF------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS------IVDGVPIFAGRISQ 340 (425)
T ss_dssp ------SCSEEE------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE------ECTTCCEEEEEECT
T ss_pred ------ccceEe------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec------ccCCccEEEEEEcC
Confidence 333333 2344567889999998 8888888999999996 55666665 44555788999999
Q ss_pred CCcEEEEeCCCCEEEEEcC-CCc--------------------eEEeecccCCCCCCCC--CcceEEEccCCcEEEEeCC
Q psy13998 256 QGYISVGDSGNNRIQIFTP-DGQ--------------------FLRAFGCWGSGDGEFK--GLEGVAVMSNGNILVCDRE 312 (319)
Q Consensus 256 ~g~~~v~~~~~~~i~~~~~-~g~--------------------~~~~~~~~~~~~~~~~--~~~~l~~~~~g~~~v~~~~ 312 (319)
+++++++++.++.|++|+. .++ .+..+ ..+.. .+.+++|+|+++++++++.
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY------QSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE------CCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh------cCcccCCceEEEEccCCCceEEEEec
Confidence 9999999999999999994 344 56666 45544 8999999999999999999
Q ss_pred CCeEEeC
Q psy13998 313 NHRIQVF 319 (319)
Q Consensus 313 ~~~i~v~ 319 (319)
|+.|++|
T Consensus 415 dg~i~iw 421 (425)
T 1r5m_A 415 LQEGSVV 421 (425)
T ss_dssp SSCCEEE
T ss_pred CceEEEE
Confidence 9999998
No 38
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=1.1e-26 Score=190.53 Aligned_cols=237 Identities=15% Similarity=0.243 Sum_probs=185.1
Q ss_pred CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----------------------CceeeEEcCCCc
Q psy13998 53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----------------------WPRGIAVGPDNS 110 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~g~ 110 (319)
+|...+.+++|+|+|+++++++ ++.+++ |+..++.....+. .+.+++|+|+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i----~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQV----YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEE----EETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEE----EEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 3667899999999999999876 689999 8877665544322 257899999999
Q ss_pred EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeec
Q psy13998 111 IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG 189 (319)
Q Consensus 111 ~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (319)
++++++.++.|++|| .+++.+..+ .+|...+.+++++|+++.+++++.|+.|++||+... +....+.
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~ 204 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMIL------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG------QCSLTLS 204 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEE------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC------eeEEEEE
Confidence 999999999999999 556666666 567778899999999999999999999999998753 3332221
Q ss_pred ccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCC-CCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998 190 SMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEG-SEEGQLKFPRGVAVDDQGYISVGDSGN 266 (319)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~~~v~~~~~ 266 (319)
....+..++++| +++++++++.++.|++||. .+..+..+.... ...++...+.+++|+|+|+++++++.|
T Consensus 205 -------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 205 -------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp -------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 123467889998 8899999999999999996 455555552211 113455678999999999999999999
Q ss_pred CEEEEEcCCC-------------ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 267 NRIQIFTPDG-------------QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 267 ~~i~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+.|++||... .....+ .+|...+.++++++++.++++++.|+.|++|
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iw 337 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTY------IGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337 (393)
T ss_dssp SEEEEEEC---------------CEEEEE------ECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEE------ecccCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999532 122233 4577789999999999999999999999998
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=2.7e-27 Score=190.72 Aligned_cols=237 Identities=14% Similarity=0.249 Sum_probs=184.6
Q ss_pred CCCCCcCCCCcceEE-----cC-CCcEEEEeCCCCeEEEeccccccccce-------eeE----EecCceeeEEcCCCcE
Q psy13998 49 GSEPGCFTWPRGIAV-----GP-DNSIVVADSSNHRVQVCFPHFDLKTNC-------VFL----AFTWPRGIAVGPDNSI 111 (319)
Q Consensus 49 ~~~~~~~~~~~~v~~-----~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~----~~~~~~~l~~~~~g~~ 111 (319)
....||...|.++++ ++ +++++++++.|++|++ |+..+.. ... +...+.+++++|++.+
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~i----Wd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMI----WKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEE----EEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEE----EECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 344678899999999 66 8999999999999999 7765321 111 2336789999999999
Q ss_pred EEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc
Q psy13998 112 VVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS 190 (319)
Q Consensus 112 ~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 190 (319)
+++++.|+.|++|| .+++.+..+ .+|...+.+++++|+++++++++.++.|++||+.+.. .....
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-------~~~~~- 156 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRF------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-------KFSSA- 156 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEE------ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-------EEECC-
T ss_pred EEEEcCCCcEEEEECCCCcEEEEE------cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-------eeeee-
Confidence 99999999999999 667777776 4567788999999999999999999999999987531 11110
Q ss_pred cCCcCCCCCCceeEEEcCCC----------cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEE
Q psy13998 191 MGNKAGQLEHPHYIAVSNTN----------RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYIS 260 (319)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g----------~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~ 260 (319)
....+...+.+++++|++ .++++++.++.|++||.+++....+ ..+...+.+++|+|+|+++
T Consensus 157 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------~~h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 157 --EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF------KAHESNVNHLSISPNGKYI 228 (343)
T ss_dssp --TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEE------ECCSSCEEEEEECTTSSEE
T ss_pred --cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEE------cCccccceEEEECCCCCEE
Confidence 012344567788888876 6889999999999999877766666 5566678999999999999
Q ss_pred EEeCCCCEEEEEcC-CC-ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 261 VGDSGNNRIQIFTP-DG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 261 v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
++++.|+.|++||. .. .....+ .+...+.+++|+|++.+++++ .|+.|++|
T Consensus 229 ~sgs~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~v~~sp~~~~la~~-~d~~v~iw 281 (343)
T 2xzm_R 229 ATGGKDKKLLIWDILNLTYPQREF-------DAGSTINQIAFNPKLQWVAVG-TDQGVKIF 281 (343)
T ss_dssp EEEETTCEEEEEESSCCSSCSEEE-------ECSSCEEEEEECSSSCEEEEE-ESSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcccceee-------cCCCcEEEEEECCCCCEEEEE-CCCCEEEE
Confidence 99999999999996 32 233333 123458999999999877655 56778887
No 40
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=191.55 Aligned_cols=236 Identities=11% Similarity=0.131 Sum_probs=175.7
Q ss_pred cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc-------cc--------eeeEEecCceeeEEcCCCcEEEEcCCC
Q psy13998 54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK-------TN--------CVFLAFTWPRGIAVGPDNSIVVADSSN 118 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~-------~~--------~~~~~~~~~~~l~~~~~g~~~~~~~~~ 118 (319)
+...+.+++|+|||+++++++ +.++++ |+.. .. ....+-..+.+++|++++. +++++.+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~----Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-l~~~s~d 102 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRC----WAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG-ILVASDS 102 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSC----CCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE-EEEEETT
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEE----eeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe-EEEEECC
Confidence 345678999999999988876 556666 4321 00 0111223578999999865 5677889
Q ss_pred CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998 119 HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197 (319)
Q Consensus 119 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (319)
+.|++|| .+++........ ..+|...+.+++|+|+|+++++++.++.|++||+... +.+..+ .+|
T Consensus 103 g~v~lWd~~~~~~~~~~~~~--~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~------~~~~~~------~~h 168 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFC--KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ------VVLSSY------RAH 168 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEE--EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEE------CCC
T ss_pred CEEEEEeccCCCceeEeecc--ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC------cEEEEE------cCc
Confidence 9999999 455433222110 0356778899999999999999999999999999843 555555 456
Q ss_pred CCCceeEEEcCCC-cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEc-
Q psy13998 198 LEHPHYIAVSNTN-RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFT- 273 (319)
Q Consensus 198 ~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~- 273 (319)
...+.++++++++ .++++++.|+.|++||. .++....+.. ..+...+.+++++|+ ++++++++.|+.|++||
T Consensus 169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC----SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred CCceEEEEecCCCCCceeeeccccccccccccccceeeeeec----ceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 6778899999987 58889999999999996 5666655522 122335788999986 57899999999999999
Q ss_pred CCCceEEeecccCCCCCCCCCcceEEEccCC-cEEEEeCCCCeEEeC
Q psy13998 274 PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG-NILVCDRENHRIQVF 319 (319)
Q Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~v~~~~~~~i~v~ 319 (319)
.+++.+..+ .+|...+++++|+|+| +++++++.|+.|++|
T Consensus 245 ~~~~~~~~~------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw 285 (344)
T 4gqb_B 245 KSTSCVLSS------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL 285 (344)
T ss_dssp CC--CCEEE------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred CCCcEEEEE------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence 467777777 6788899999999998 489999999999998
No 41
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=1.9e-27 Score=193.69 Aligned_cols=278 Identities=10% Similarity=0.078 Sum_probs=208.4
Q ss_pred hcccccccCCCccchhccccceeeeecccCCCC----------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc
Q psy13998 20 LVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP----------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK 89 (319)
Q Consensus 20 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~ 89 (319)
....|.+++|+|++.+++.+..+..+..|+... +|...+.+++|+|+++++++++.++.|++ |+..
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v----wd~~ 82 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV----WTLK 82 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE----EEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE----EECC
Confidence 467899999999999999887676666664332 45577899999999999999999999999 8886
Q ss_pred cceeeE------EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCc---EEEEecCCCccCCCCCCceeEEEeCCCeEE
Q psy13998 90 TNCVFL------AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159 (319)
Q Consensus 90 ~~~~~~------~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 159 (319)
+..... +...+.+++++++++++++++.++.|.+|+. .+. ....+. ..+...+.+++++|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-----KPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-----TTCCSCEEEEEECTTSSEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee-----cccCCCeeEEEEcCCCCEE
Confidence 655322 2236789999999999999999999999993 333 122221 3345678999999999999
Q ss_pred EEeCCCCEEEEEecCCceee------------ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC
Q psy13998 160 VSDSNNHRVQIFDVNGRVFQ------------SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 227 (319)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~ 227 (319)
++++.++.|++||+...... ..++.+..+ ..+...+.+++++|+++++++++.++.|++||.
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES------SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC------CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEec------CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 99999999999996421100 112333333 244556889999999999999999999999996
Q ss_pred -CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC---Cce--EEeecc-----------------
Q psy13998 228 -NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD---GQF--LRAFGC----------------- 284 (319)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~---g~~--~~~~~~----------------- 284 (319)
+++.+..+ ..+...+.+++++|++.+++++ .++.|++|+.. |+. +..+..
T Consensus 232 ~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (372)
T 1k8k_C 232 DKKMAVATL------ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 304 (372)
T ss_dssp GGTTEEEEE------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred CCCceeEEE------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence 67777777 4455568899999999988887 88999999953 321 100000
Q ss_pred --------------cCCCCCCCCCcceEEEc-cCC---cEEEEeCCCCeEEeC
Q psy13998 285 --------------WGSGDGEFKGLEGVAVM-SNG---NILVCDRENHRIQVF 319 (319)
Q Consensus 285 --------------~~~~~~~~~~~~~l~~~-~~g---~~~v~~~~~~~i~v~ 319 (319)
.....+|...+.++++. ++| .++++++.|+.|++|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEE
Confidence 00113677889999866 676 899999999999998
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=5.2e-28 Score=197.91 Aligned_cols=272 Identities=9% Similarity=0.078 Sum_probs=202.8
Q ss_pred cccccccCCCccc-hhccccceeeeecccCCCC----------CcCCCCcceEEcC-CCcEEEEeCCCCeEEEecccccc
Q psy13998 21 VSGIGQVGTTPRS-QYLQKRRLQFKIGSRGSEP----------GCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDL 88 (319)
Q Consensus 21 ~~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~ 88 (319)
...|.+++|+|++ .+++++..+..+.+|+... +|...+.+++|+| +++++++++.|+.|++ |+.
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i----wd~ 148 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL----RDF 148 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE----EET
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE----EEC
Confidence 4678999999998 8999998887777775542 4667889999999 7789999999999999 888
Q ss_pred ccceeeEEe-------cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEE
Q psy13998 89 KTNCVFLAF-------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIV 160 (319)
Q Consensus 89 ~~~~~~~~~-------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~ 160 (319)
.+.. ...+ ..+.+++++|+++++++++.++.|++||.+++.+..+ ..+...+.+++++|++. +++
T Consensus 149 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 149 SGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKE------KLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp TSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEE------ECSSSCEEEEEECSSCTTEEE
T ss_pred CCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEe------ccCCCcEEEEEECCCCCCEEE
Confidence 6432 2222 3468999999999999999999999999888887777 45667889999999998 899
Q ss_pred EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeCC-CCEEEEeCCC
Q psy13998 161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN-GRVITSFGSE 238 (319)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~ 238 (319)
+++.++.|++||+.... ..+..+..+ .+...+.+++++| ++.++++++.++.|++||.. +.....+...
T Consensus 222 s~~~d~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIK--DKNSYIAEM-------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp EEETTSEEEEEEGGGCC--STTCEEEEE-------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred EEeCCCEEEEEeCCCCC--cccceEEEe-------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 99999999999987410 012333332 2445678999999 99999999999999999963 3332222110
Q ss_pred C-CCccccc----------CcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcE
Q psy13998 239 G-SEEGQLK----------FPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNI 306 (319)
Q Consensus 239 ~-~~~~~~~----------~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 306 (319)
. ....+.. ....++++|+|++ +++.++.|++|| .+++.+..+.. ..+...+..++|+|+|++
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~----~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD----PNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB----TTBCSCCCEEEECTTSSE
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC----CCCCceEEEEEEecCccE
Confidence 0 0001111 1223556666665 667899999999 46888877732 123455677799999999
Q ss_pred EEEeCCCCeEEeC
Q psy13998 307 LVCDRENHRIQVF 319 (319)
Q Consensus 307 ~v~~~~~~~i~v~ 319 (319)
+++++ |+.|++|
T Consensus 367 l~s~s-d~~i~iw 378 (383)
T 3ei3_B 367 LASGM-GFNILIW 378 (383)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEec-CCcEEEE
Confidence 99996 8999998
No 43
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=4.6e-27 Score=191.89 Aligned_cols=252 Identities=17% Similarity=0.234 Sum_probs=191.3
Q ss_pred CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998 51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQS 126 (319)
Q Consensus 51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~ 126 (319)
..||...|.+++|+|+|+++++++.|++|++ |+..+......+ ..+.+++|+|+++++++++.++.+.+|+.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~i----Wd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIV----WNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEE----EETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEE----EECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 3578899999999999999999999999999 888776655533 46788999999999999999999999994
Q ss_pred CCcE--EEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998 127 DGTF--VGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY 203 (319)
Q Consensus 127 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (319)
.... ...........+|...+..+.+.|+ +..+++++.|+.|++||+... +.+..+... ....+...+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~~-~~~~h~~~v~~ 210 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG------QRISIFGSE-FPSGHTADVLS 210 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC------CEEEEECCC-SSSSCCSCEEE
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC------cEEEEeecc-cCCCCccCeEE
Confidence 3211 0000111112456667788888885 467899999999999998743 333333211 11345566788
Q ss_pred EEEcC-CCcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceE
Q psy13998 204 IAVSN-TNRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFL 279 (319)
Q Consensus 204 ~~~~~-~g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~ 279 (319)
+++++ +++++++++.++.|++||.. +..+..+ .+|...+.+++|+|+|+++++++.|+.|++||. .++.+
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY------HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE------CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE------CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 88876 77999999999999999964 4555666 567778999999999999999999999999994 66666
Q ss_pred EeecccC-CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 280 RAFGCWG-SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 280 ~~~~~~~-~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
..+.... ....+...+.+++|+|+|+++++++.|+.|++|
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence 6653221 112233458899999999999999999999998
No 44
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=6e-27 Score=184.80 Aligned_cols=239 Identities=12% Similarity=0.123 Sum_probs=179.4
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc--eeeE----EecCceeeEEcCC--CcEEEEcCCCCeEEE
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN--CVFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQV 123 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~~ 123 (319)
.+|...+.+++|+++|+++++++.|+.|++ |+..+. .... |-..+.+++|+++ ++++++++.|+.|++
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~i----w~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKI----FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEE----EEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEE----EecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 467788999999999999999999999999 877532 2222 3346788999864 789999999999999
Q ss_pred EcC-CCc--EEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998 124 FQS-DGT--FVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198 (319)
Q Consensus 124 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (319)
||. +++ .+..+ ..|...+.+++++|+ +.++++++.++.|++|+++.... .....+ ..+.
T Consensus 82 Wd~~~~~~~~~~~~------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----~~~~~~------~~h~ 145 (297)
T 2pm7_B 82 WKEENGRWSQIAVH------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----TSPIII------DAHA 145 (297)
T ss_dssp EEBSSSCBCCCEEE------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----BCCEEE------ECCS
T ss_pred EEcCCCceEEEEEe------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----eeeeee------eccc
Confidence 994 342 22333 345567899999997 88999999999999999874210 001111 2344
Q ss_pred CCceeEEEcCC-------------CcEEEEeCCCCeEEEEeCC-CC----EEEEeCCCCCCcccccCcceEEEcCCC---
Q psy13998 199 EHPHYIAVSNT-------------NRVIVSDSNNHRVQIFDVN-GR----VITSFGSEGSEEGQLKFPRGVAVDDQG--- 257 (319)
Q Consensus 199 ~~~~~~~~~~~-------------g~~~v~~~~~~~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~i~~~~~g--- 257 (319)
..+.+++++|+ ++++++++.++.|++||.+ +. ....+ .+|...+.+++|+|++
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l------~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL------EGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE------CCCSSCEEEEEECCCCSSS
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe------cCCCCceEEEEECCCCCCc
Confidence 56778888886 4689999999999999953 33 34445 5677789999999984
Q ss_pred cEEEEeCCCCEEEEEcCCCc---eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 258 YISVGDSGNNRIQIFTPDGQ---FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 258 ~~~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.++++++.|+.|++|+.+.. ....... ...+...+.+++|+|+|+++++++.|+.|++|
T Consensus 220 ~~las~s~D~~v~iWd~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw 281 (297)
T 2pm7_B 220 SYMASVSQDRTCIIWTQDNEQGPWKKTLLK---EEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281 (297)
T ss_dssp EEEEEEETTSCEEEEEESSTTSCCEEEESS---SSCCSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred eEEEEEECCCcEEEEEeCCCCCccceeeee---cccCCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 78999999999999995431 1111110 02345678999999999999999999999998
No 45
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=8e-28 Score=195.10 Aligned_cols=262 Identities=12% Similarity=0.112 Sum_probs=182.7
Q ss_pred cccccCCCccchhccccce-------eeeecccCCC------------------CCcCCCCcceEEcCCCcEEEEe----
Q psy13998 23 GIGQVGTTPRSQYLQKRRL-------QFKIGSRGSE------------------PGCFTWPRGIAVGPDNSIVVAD---- 73 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~~~~~-------~~~~~~~~~~------------------~~~~~~~~~v~~~~~g~~~~~~---- 73 (319)
.|.+++|+|++.+++++.. +.++..|... .++-..|.++++ +++.++++
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECCC
Confidence 5889999999999998642 1233344221 233345666655 45555554
Q ss_pred -------CCCCeEEEeccccccccceeeE----Ee---------cCceeeEEcCCCcEEE--EcCCCCeEEEEc-CCCcE
Q psy13998 74 -------SSNHRVQVCFPHFDLKTNCVFL----AF---------TWPRGIAVGPDNSIVV--ADSSNHRVQVFQ-SDGTF 130 (319)
Q Consensus 74 -------~~~~~v~~~~~~~~~~~~~~~~----~~---------~~~~~l~~~~~g~~~~--~~~~~~~i~~~~-~~~~~ 130 (319)
+.++.+++ |+..+..... .. ..+..++|+|||++++ +++.++.|++|| .+++.
T Consensus 94 ~~~l~s~~~d~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 94 STKITQGKGNKHLRK----FKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp HHHHHHTSCCCCEEE----EEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred ccEEEEecCCCcEEE----EEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence 34678888 7654332111 11 1356799999998654 455689999999 56666
Q ss_pred EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998 131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 210 (319)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (319)
+..+. +...+.+++|+|+|+++++++.++.+.+|...+. .+..... ..+...+.+++++|++
T Consensus 170 ~~~~~-------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~-------~~~~~~~----~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 170 KFEIE-------TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGS-------CIARKTD----FDKNWSLSKINFIADD 231 (365)
T ss_dssp EEEEE-------CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCC-------EEEEECC----CCTTEEEEEEEEEETT
T ss_pred EEEeC-------CCCceEEEEEccCCceEEeccceeEEEEEeccCc-------ceeeeec----CCCCCCEEEEEEcCCC
Confidence 66653 3356799999999999999886655554444432 2211111 2233456789999999
Q ss_pred cEEEEeCCCC----eEEEEeCCCCEE-----EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEE
Q psy13998 211 RVIVSDSNNH----RVQIFDVNGRVI-----TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLR 280 (319)
Q Consensus 211 ~~~v~~~~~~----~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~ 280 (319)
.++++++.++ .++.|+...... ..+ .++...+.+++|+|+|+++++++.|+.|++|| .+++.+.
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~ 305 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV------TNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK 305 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE------ESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeee------cCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence 9888876555 577888533221 223 34556788999999999999999999999999 4678777
Q ss_pred eecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.+. .+|...+++++|+|||+++++++.|++||||
T Consensus 306 ~~~-----~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 306 IFK-----QAHSFAITEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EET-----TSSSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred Eec-----CcccCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 752 4688899999999999999999999999998
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=3.3e-27 Score=195.53 Aligned_cols=270 Identities=11% Similarity=0.071 Sum_probs=202.9
Q ss_pred cccccCCCccchhccccceeeeecccCCCCCcC-------CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE
Q psy13998 23 GIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF-------TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL 95 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 95 (319)
.+..++|+|++.+++++..+..+..|+...+.. ..+....++++++++++++.++.|++ |+..+.....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i----wd~~~~~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV----LDSNFNLQRE 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEE----ECTTSCEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEE----EeCCCcceee
Confidence 345788999999999998888877776554322 22233467899999999999999999 8887666555
Q ss_pred Ee----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEE
Q psy13998 96 AF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI 170 (319)
Q Consensus 96 ~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~ 170 (319)
.+ ..+.+++++|+++++++++.++.|++|| .+++.+..+ .+|...+.+++++|+++++++++.++.|++
T Consensus 134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL------IGHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE------ECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 33 3678999999999999999999999999 566666666 456678899999999999999999999999
Q ss_pred EecCCceeeecCceeeeecccCC------------------cCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCE
Q psy13998 171 FDVNGRVFQSDGTFVGKFGSMGN------------------KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRV 231 (319)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~ 231 (319)
||+... +.+..+..... ...+.....+++++|+++++++++.++.|++||. .++.
T Consensus 208 wd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 208 WECGTG------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp EETTTT------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred eECCCC------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence 998753 22222211100 0011234566788899999999999999999996 5555
Q ss_pred EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCc-eEEeecccCCCCCCCCCcceEEEccCCcEEE
Q psy13998 232 ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQ-FLRAFGCWGSGDGEFKGLEGVAVMSNGNILV 308 (319)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v 308 (319)
...+. ..+...+.+++++|++. ++++++.++.|++||. +++ .+..+. ..+...+..+. .+++++++
T Consensus 282 ~~~~~-----~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~-~~~~~~l~ 350 (420)
T 3vl1_A 282 TIQLP-----SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL-----INEGTPINNVY-FAAGALFV 350 (420)
T ss_dssp EEEEC-----CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-----ESTTSCEEEEE-EETTEEEE
T ss_pred eEEcc-----cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-----ccCCCCceEEE-eCCCCEEE
Confidence 55552 23445688999999998 9999999999999995 443 344442 12344566664 45788999
Q ss_pred EeCCCCeEEeC
Q psy13998 309 CDRENHRIQVF 319 (319)
Q Consensus 309 ~~~~~~~i~v~ 319 (319)
+++.|+.|++|
T Consensus 351 s~~~d~~v~iw 361 (420)
T 3vl1_A 351 SSGFDTSIKLD 361 (420)
T ss_dssp EETTTEEEEEE
T ss_pred EecCCccEEEE
Confidence 99999999998
No 47
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=1.4e-27 Score=196.24 Aligned_cols=283 Identities=12% Similarity=0.101 Sum_probs=206.9
Q ss_pred cccccccCCCccchhccccceeeeecccCCCCC--------------cCCCCcceEEcCC----C---cEEEEeCCCCeE
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------------CFTWPRGIAVGPD----N---SIVVADSSNHRV 79 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~----g---~~~~~~~~~~~v 79 (319)
...|.+++|+| .++++++.+..+..|+...+ |...+.+++|+++ | +++++++.++.|
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 56889999998 77888877777777654433 3467889999999 9 999999999999
Q ss_pred EEecccccccccee-----eEEe---------cCceeeEEc----CCCcE-EEEcCCCCeEEEEcC-C------CcEEE-
Q psy13998 80 QVCFPHFDLKTNCV-----FLAF---------TWPRGIAVG----PDNSI-VVADSSNHRVQVFQS-D------GTFVG- 132 (319)
Q Consensus 80 ~~~~~~~~~~~~~~-----~~~~---------~~~~~l~~~----~~g~~-~~~~~~~~~i~~~~~-~------~~~~~- 132 (319)
++ |+..+... ...+ ..+.+++++ ++++. +++++.++.|++||. . ++.+.
T Consensus 94 ~i----w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 169 (397)
T 1sq9_A 94 LF----YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 169 (397)
T ss_dssp EE----EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred EE----EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence 99 88765553 3322 567889999 99998 999999999999993 3 33222
Q ss_pred ----EecC-CCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC---CCCceeE
Q psy13998 133 ----KFGS-MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ---LEHPHYI 204 (319)
Q Consensus 133 ----~~~~-~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 204 (319)
.+.. ......+...+.+++++|++ ++++++.++.|.+||++.. +.+..+... ..+ ...+.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~------~~~~~~~~~---~~h~~~~~~i~~i 239 (397)
T 1sq9_A 170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL------RPLYNFESQ---HSMINNSNSIRSV 239 (397)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT------EEEEEEECC---C---CCCCCEEEE
T ss_pred cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC------ceeEEEecc---ccccccCCccceE
Confidence 2210 00002245678999999999 9999999999999999743 344443210 113 4567899
Q ss_pred EEcCCCcEEEEeCCC---CeEEEEeC-CCCEEEEeCCCCC-------CcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998 205 AVSNTNRVIVSDSNN---HRVQIFDV-NGRVITSFGSEGS-------EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT 273 (319)
Q Consensus 205 ~~~~~g~~~v~~~~~---~~i~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~ 273 (319)
+++|+++++++++.+ +.|++||. +++.+..+..... ...+...+.+++++|+++++++++.++.|++|+
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999888 99999995 5677777621000 000556789999999999999999999999999
Q ss_pred C-CCceEEeecccCCCCCC---------------CCCcceEEEccCC----------cEEEEeCCCCeEEeC
Q psy13998 274 P-DGQFLRAFGCWGSGDGE---------------FKGLEGVAVMSNG----------NILVCDRENHRIQVF 319 (319)
Q Consensus 274 ~-~g~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~g----------~~~v~~~~~~~i~v~ 319 (319)
. +++.+..+........+ ...+.+++|+|+| +++++++.|+.|++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 391 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence 4 67777777311000033 6789999999998 799999999999998
No 48
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=1.8e-27 Score=192.54 Aligned_cols=239 Identities=12% Similarity=0.132 Sum_probs=175.8
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCC------CCeEEEecccccccccee--------eEEecCceeeEEcCCCcEEEEcCC
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSS------NHRVQVCFPHFDLKTNCV--------FLAFTWPRGIAVGPDNSIVVADSS 117 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~------~~~v~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~g~~~~~~~~ 117 (319)
.+|...+.+|+|+|||+++++++. |+.|++ |+..+... ..+-..+.+++|+|++.+++ ++.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~----~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~ 113 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWV----FKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASD 113 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEE----ESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EET
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEE----EECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EEC
Confidence 346778999999999999999986 678888 66543321 11334678999999987665 456
Q ss_pred CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCC
Q psy13998 118 NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG 196 (319)
Q Consensus 118 ~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (319)
++.|++|| .+++....... ...+|...+.+++++|+++++++++.++.|++||.... +.+..+ ..
T Consensus 114 dg~v~lWd~~~~~~~~~~~~--~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~------~~~~~~------~~ 179 (357)
T 4g56_B 114 SGAVELWEILEKESLLVNKF--AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK------AVLKSY------NA 179 (357)
T ss_dssp TSCEEEC--------CCCCE--EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT------EEEEEE------CC
T ss_pred CCEEEEeeccccceeEEEee--ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC------cEEEEE------cC
Confidence 88999999 44443221110 11356678899999999999999999999999998853 444444 34
Q ss_pred CCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEc
Q psy13998 197 QLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFT 273 (319)
Q Consensus 197 ~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~ 273 (319)
+...+.++++++++ .++++++.++.|++||.. ++....+.. ..+...+.+++++|++ .++++++.++.|++||
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~----~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd 255 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF----CASDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC----TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee----ccccccccchhhhhcccceEEEeecccceeEEE
Confidence 55678899999887 578888889999999964 443333211 2233457899999984 6888999999999999
Q ss_pred -CCCceEEeecccCCCCCCCCCcceEEEccCC-cEEEEeCCCCeEEeC
Q psy13998 274 -PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG-NILVCDRENHRIQVF 319 (319)
Q Consensus 274 -~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~v~~~~~~~i~v~ 319 (319)
.+++.+..+ ..+...+.+++|+|++ +++++++.|+.|++|
T Consensus 256 ~~~~~~~~~~------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iw 297 (357)
T 4g56_B 256 IKNPDSAQTS------AVHSQNITGLAYSYHSSPFLASISEDCTVAVL 297 (357)
T ss_dssp SSCGGGCEEE------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred CCCCcEeEEE------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 467777777 5677889999999997 488999999999998
No 49
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=3.4e-27 Score=187.83 Aligned_cols=238 Identities=12% Similarity=0.103 Sum_probs=175.8
Q ss_pred CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee--eE----EecCceeeEEcC--CCcEEEEcCCCCeEE
Q psy13998 51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--FL----AFTWPRGIAVGP--DNSIVVADSSNHRVQ 122 (319)
Q Consensus 51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~----~~~~~~~l~~~~--~g~~~~~~~~~~~i~ 122 (319)
..+|...+.+++|+++|+++++++.|++|++ |++.+... .. |-..+.+++|++ +++++++++.|+.|+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~l----wd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKI----FDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEE----EEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEE----EEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 3577889999999999999999999999999 88865432 22 234678899976 378999999999999
Q ss_pred EEcC-CCc--EEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998 123 VFQS-DGT--FVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197 (319)
Q Consensus 123 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (319)
+||. +++ ....+ .+|...+.+++++|+ +.++++++.|+.|++|+..+.... .....+ ..+
T Consensus 85 iWd~~~~~~~~~~~~------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~---~~~~~~------~~h 149 (316)
T 3bg1_A 85 IWREENGTWEKSHEH------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW---EVKKIN------NAH 149 (316)
T ss_dssp EECCSSSCCCEEEEE------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE---EECCBT------TSS
T ss_pred EEECCCCcceEEEEc------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc---ceeeee------ccc
Confidence 9994 442 34444 456677899999997 789999999999999998742100 001111 233
Q ss_pred CCCceeEEEcCC-----------------CcEEEEeCCCCeEEEEeCCCC----EEEEeCCCCCCcccccCcceEEEcCC
Q psy13998 198 LEHPHYIAVSNT-----------------NRVIVSDSNNHRVQIFDVNGR----VITSFGSEGSEEGQLKFPRGVAVDDQ 256 (319)
Q Consensus 198 ~~~~~~~~~~~~-----------------g~~~v~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~ 256 (319)
.....+++++|+ ++++++++.++.|++||.... ....+ .+|...+.+++|+|+
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l------~~h~~~V~~v~~sp~ 223 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL------EAHSDWVRDVAWAPS 223 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC------BCCSSCEEEEECCCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec------ccCCCceEEEEecCC
Confidence 445566777775 468899999999999996532 33333 456677899999998
Q ss_pred C----cEEEEeCCCCEEEEEcCCC----c-eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 257 G----YISVGDSGNNRIQIFTPDG----Q-FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 257 g----~~~v~~~~~~~i~~~~~~g----~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+ .++++++.|++|++|+.+. + ....+ ..+...+++++|+|+|+++++++.|+.|++|
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~------~~~~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL------HKFNDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE------EECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred CCCCCceEEEEcCCCeEEEEEccCccccchhhhhh------hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 6 7899999999999999543 1 11122 2345679999999999999999999999998
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.1e-27 Score=195.96 Aligned_cols=288 Identities=15% Similarity=0.170 Sum_probs=207.3
Q ss_pred hhhhhhhh-h--cccccccCCCc-cchhccccceeeeecccCCCC-------------CcCCCCcceEEcCCCcEEEEeC
Q psy13998 12 SCFLLQTL-L--VSGIGQVGTTP-RSQYLQKRRLQFKIGSRGSEP-------------GCFTWPRGIAVGPDNSIVVADS 74 (319)
Q Consensus 12 ~~~~~~~~-~--~~~i~~~~~~~-~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~g~~~~~~~ 74 (319)
+++++..+ . ...|.+++|+| ++.++++++.+..+..|+... +|...+.+++|+|+++++++++
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe
Confidence 34455555 2 57899999999 999999998888877775322 3456789999999999999999
Q ss_pred CCCeEEEeccccccc---cceeeEE--------e--------cCceeeE--EcCCCcEEEEcCCCCeEEEEc-CCCcEEE
Q psy13998 75 SNHRVQVCFPHFDLK---TNCVFLA--------F--------TWPRGIA--VGPDNSIVVADSSNHRVQVFQ-SDGTFVG 132 (319)
Q Consensus 75 ~~~~v~~~~~~~~~~---~~~~~~~--------~--------~~~~~l~--~~~~g~~~~~~~~~~~i~~~~-~~~~~~~ 132 (319)
.|+.|++ |++. +...... + ..+.++. +++++.++++++.++.|++|| .+++.+.
T Consensus 131 ~dg~i~v----wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 131 KDGQIIV----LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp TTSEEEE----EEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEE----EEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 9999999 7773 2222211 1 1123333 457788999999999999999 5777777
Q ss_pred EecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc----C
Q psy13998 133 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS----N 208 (319)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 208 (319)
.+... .+...+.+++++|+++++++++.++.|++||++.. +.+..+.. .+...+.+++++ +
T Consensus 207 ~~~~~----~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~-----~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 207 IIENS----PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN------VLIRSWSF-----GDHAPITHVEVCQFYGK 271 (437)
T ss_dssp EEECC----GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT------EEEEEEBC-----TTCEEEEEEEECTTTCT
T ss_pred EEccC----CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc------cEEEEEec-----CCCCceEEEEeccccCC
Confidence 76321 15568899999999999999999999999999743 44443321 223346777554 4
Q ss_pred CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC------------------Cc--ccccCcceEEEcCCCcEEEEeCCCC
Q psy13998 209 TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGS------------------EE--GQLKFPRGVAVDDQGYISVGDSGNN 267 (319)
Q Consensus 209 ~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~------------------~~--~~~~~~~~i~~~~~g~~~v~~~~~~ 267 (319)
++.++++++.++.|++||. +++.+..+..... .. .+...+.+++++ +++++++++.|+
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~ 350 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS 350 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence 6789999999999999996 4665555532110 01 144557889999 778999999999
Q ss_pred EEEEEcC-CCceEEeeccc-------------------------------CCCCCCCCCcceEEEccC--CcEEEEeCCC
Q psy13998 268 RIQIFTP-DGQFLRAFGCW-------------------------------GSGDGEFKGLEGVAVMSN--GNILVCDREN 313 (319)
Q Consensus 268 ~i~~~~~-~g~~~~~~~~~-------------------------------~~~~~~~~~~~~l~~~~~--g~~~v~~~~~ 313 (319)
.|++|+. +++.+..+... .....|...+.++++.++ +.++++++.|
T Consensus 351 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d 430 (437)
T 3gre_A 351 SIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS 430 (437)
T ss_dssp EEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred eEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence 9999994 55544444210 001126778999999987 6799999999
Q ss_pred CeEEeC
Q psy13998 314 HRIQVF 319 (319)
Q Consensus 314 ~~i~v~ 319 (319)
|.|++|
T Consensus 431 G~I~iw 436 (437)
T 3gre_A 431 GLIGIF 436 (437)
T ss_dssp SCEEEE
T ss_pred ceEEEe
Confidence 999998
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=1.6e-25 Score=182.39 Aligned_cols=237 Identities=11% Similarity=0.102 Sum_probs=187.4
Q ss_pred cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998 54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S 126 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~ 126 (319)
|-..+.+++|+|+|+++++++.++.|++ |+..+.. ....+ ..+.+++++|+++++++++.++.|++|+ .
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHI----YEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEE----EEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEE----EeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 4567899999999999999999999999 8887664 33333 3678999999999999999999999999 4
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
+++....... ..+...+.+++++++++++++++.++.|.+|+++.... ........ ..+...+.++++
T Consensus 83 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~-----~~~~~~i~~~~~ 150 (372)
T 1k8k_C 83 GRTWKPTLVI----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND---WWVCKHIK-----KPIRSTVLSLDW 150 (372)
T ss_dssp TTEEEEEEEC----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT---EEEEEEEC-----TTCCSCEEEEEE
T ss_pred CCeeeeeEEe----ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc---ceeeeeee-----cccCCCeeEEEE
Confidence 5543333321 23456789999999999999999999999999874310 00111111 234566889999
Q ss_pred cCCCcEEEEeCCCCeEEEEeC-------------------CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC
Q psy13998 207 SNTNRVIVSDSNNHRVQIFDV-------------------NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN 267 (319)
Q Consensus 207 ~~~g~~~v~~~~~~~i~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~ 267 (319)
+|+++++++++.++.|++||. .++.+..+ ..+...+.+++++|+++++++++.++
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~ 224 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES------SSSCGWVHGVCFSANGSRVAWVSHDS 224 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC------CCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec------CCCCCeEEEEEECCCCCEEEEEeCCC
Confidence 999999999999999999994 35566665 45556789999999999999999999
Q ss_pred EEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 268 RIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 268 ~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.|++|+. +++.+..+ ..+...+.+++++|++++++++ .|+.|++|
T Consensus 225 ~i~i~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~ 270 (372)
T 1k8k_C 225 TVCLADADKKMAVATL------ASETLPLLAVTFITESSLVAAG-HDCFPVLF 270 (372)
T ss_dssp EEEEEEGGGTTEEEEE------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEE
T ss_pred EEEEEECCCCceeEEE------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEE
Confidence 9999994 68888877 4666789999999999988888 88999887
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=2e-26 Score=187.13 Aligned_cols=278 Identities=10% Similarity=0.086 Sum_probs=199.7
Q ss_pred cccccccCCCcc----chhccccceeeeecccCCCCC-------------cCCCCcceEEcCC----CcEEEEeCCCCeE
Q psy13998 21 VSGIGQVGTTPR----SQYLQKRRLQFKIGSRGSEPG-------------CFTWPRGIAVGPD----NSIVVADSSNHRV 79 (319)
Q Consensus 21 ~~~i~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~----g~~~~~~~~~~~v 79 (319)
...|.+++|+|. ...+........+..|....+ +...+.+++|+++ |+++++++.++.|
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence 568899999984 223333333334555543322 2356889999998 6799999999999
Q ss_pred EEeccccccccceeeEEe----cCceeeEEcC-CCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEe
Q psy13998 80 QVCFPHFDLKTNCVFLAF----TWPRGIAVGP-DNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS 153 (319)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~~-~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (319)
++ |+..+......+ ..+.+++++| +++++++++.++.|++|| .+++.+..+... ..+...+.+++++
T Consensus 98 ~v----~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~ 170 (366)
T 3k26_A 98 RI----INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV---EGHRDEVLSADYD 170 (366)
T ss_dssp EE----ECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST---TSCSSCEEEEEEC
T ss_pred EE----EEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc---ccccCceeEEEEC
Confidence 99 888766655533 3678999999 889999999999999999 556666665321 2455778999999
Q ss_pred CCCeEEEEeCCCCEEEEEecCCceee----------ecCceee------eecccCCcCCCCCCceeEEEcCCCcEEEEeC
Q psy13998 154 NTNRVIVSDSNNHRVQIFDVNGRVFQ----------SDGTFVG------KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217 (319)
Q Consensus 154 ~~g~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~ 217 (319)
|+++++++++.++.|++||++..... +++.... ..........+...+.+++++ ++++++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 99999999999999999999753210 0000000 000000112255667888887 67899999
Q ss_pred CCCeEEEEeCC-CC--------------EEEEeCCCCCCcccccCcceEEEcCC--CcEEEEeCCCCEEEEEcCC-Cc--
Q psy13998 218 NNHRVQIFDVN-GR--------------VITSFGSEGSEEGQLKFPRGVAVDDQ--GYISVGDSGNNRIQIFTPD-GQ-- 277 (319)
Q Consensus 218 ~~~~i~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~i~~~~~--g~~~v~~~~~~~i~~~~~~-g~-- 277 (319)
.++.|++||.. +. .+..+ ..+...+..++++|+ ++++++++.++.|++|+.. ++
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRF------DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE------ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccc------cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 99999999953 22 23333 344556788999999 9999999999999999954 33
Q ss_pred --eEEeecccCCCCCC--CCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 278 --FLRAFGCWGSGDGE--FKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 278 --~~~~~~~~~~~~~~--~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
....+ ..+ ...+.+++|+|+++++++++.|+.|++|
T Consensus 323 ~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 323 KAKCTTL------THHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp GCEEEEE------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccceEE------cccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence 33344 333 5789999999999999999999999998
No 53
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.6e-26 Score=181.18 Aligned_cols=236 Identities=13% Similarity=0.171 Sum_probs=176.8
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc--eeeE------EecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN--CVFL------AFTWPRGIAVGPDNSIVVADSSNHRVQV 123 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~--~~~~------~~~~~~~l~~~~~g~~~~~~~~~~~i~~ 123 (319)
.+|...+.+++++++ ++++++.|+.|++ |+..+. .... +...+.+++|+|+++++++++.++.|++
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~l----w~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKL----VSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEE----EECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEE----EEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 367788999999987 8999999999999 777543 2222 2235789999999999999999999999
Q ss_pred EcCCC--------cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC
Q psy13998 124 FQSDG--------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA 195 (319)
Q Consensus 124 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (319)
|+... +.+..+ .+|...+.+++|+|+++++++++.|+.|++||++... ...+.+..+ .
T Consensus 85 w~~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~--~~~~~~~~~------~ 150 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAII------EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG--EEYECISVL------Q 150 (330)
T ss_dssp EEC-------CCCEEEEEE------C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC--CCCEEEEEE------C
T ss_pred EEcccCcCccccceeEEEE------cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC--CCeEEEEEe------c
Confidence 99532 233334 4677788999999999999999999999999984210 011222333 3
Q ss_pred CCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-C--CEEEEeCCCCCCcccccCcceEEEcCC--CcEEEEeCCCCEEE
Q psy13998 196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-G--RVITSFGSEGSEEGQLKFPRGVAVDDQ--GYISVGDSGNNRIQ 270 (319)
Q Consensus 196 ~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~~~~--g~~~v~~~~~~~i~ 270 (319)
.+...+.+++++|++.++++++.++.|++|+.. + +.+..+ .+|...+.+++|+|+ +.++++++.|+.|+
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~ 224 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE------CCCSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc------cCCCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence 455678899999999999999999999999953 3 345555 566677899999998 67899999999999
Q ss_pred EEcCCC---------ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 271 IFTPDG---------QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 271 ~~~~~g---------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+|+..+ .....+. ..|...+.+++|++++ ++++++.|+.|++|
T Consensus 225 iw~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw 276 (330)
T 2hes_X 225 VWKYMGDDEDDQQEWVCEAILP-----DVHKRQVYNVAWGFNG-LIASVGADGVLAVY 276 (330)
T ss_dssp EEEEEEECTTSCEEEEEEEECC-----SCCSSCEEEEEECTTS-CEEEEETTSCEEEE
T ss_pred EEEecCCCccccceeEEeeecc-----cccccceEEEEEcCCC-EEEEEeCCCEEEEE
Confidence 999532 1222221 1266789999999765 78888999999998
No 54
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.1e-25 Score=182.55 Aligned_cols=252 Identities=10% Similarity=0.142 Sum_probs=193.8
Q ss_pred chhccccceeeeecccCCCCC---------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----C
Q psy13998 33 SQYLQKRRLQFKIGSRGSEPG---------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----W 99 (319)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~ 99 (319)
+..+..+..+..+..|+...+ |...+.+++|+|+++++++++.++.|++ |+..+......+. .
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i----wd~~~~~~~~~~~~~~~~ 178 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI----YDVESQTKLRTMAGHQAR 178 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE----EETTTCCEEEEECCCSSC
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE----EECcCCeEEEEecCCCCc
Confidence 345666666777777765544 3456889999999999999999999999 8887766665443 5
Q ss_pred ceeeEEcCCCcEEEEcCCCCeEEEEcCC--CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998 100 PRGIAVGPDNSIVVADSSNHRVQVFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 177 (319)
Q Consensus 100 ~~~l~~~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~ 177 (319)
+.++++ +++++++++.++.|.+||.. +.....+ ..+...+.+++++|+++++++++.++.|++||+...
T Consensus 179 v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~- 249 (401)
T 4aez_A 179 VGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTL------QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS- 249 (401)
T ss_dssp EEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-
T ss_pred eEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEE------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-
Confidence 677888 45788999999999999943 4555555 456678899999999999999999999999999842
Q ss_pred eeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeC--CCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEE
Q psy13998 178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDS--NNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAV 253 (319)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~--~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (319)
+.+..+ ..+...+.+++++|++ .++++++ .++.|++||. +++.+..+. +...+.++++
T Consensus 250 -----~~~~~~------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-------~~~~v~~~~~ 311 (401)
T 4aez_A 250 -----IPKFTK------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-------AGSQVTSLIW 311 (401)
T ss_dssp -----SEEEEE------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-------CSSCEEEEEE
T ss_pred -----CccEEe------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-------CCCcEEEEEE
Confidence 333333 3345667899999976 6777755 6999999996 566666652 2345889999
Q ss_pred cCCCcEEEE--eCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 254 DDQGYISVG--DSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 254 ~~~g~~~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+|++.++++ +..++.|++|+. +++....... .++...+.+++++|+|+++++++.|+.|++|
T Consensus 312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~----~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI----PAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp CSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE----ECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred CCCCCeEEEEeecCCCcEEEEecCCccceeEEEe----cCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 999988887 558999999994 4444333211 4577789999999999999999999999998
No 55
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=2.1e-25 Score=179.82 Aligned_cols=246 Identities=12% Similarity=0.130 Sum_probs=184.8
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce----eeE----EecCceeeEEcC--CCcEEEEcCCCCeE
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC----VFL----AFTWPRGIAVGP--DNSIVVADSSNHRV 121 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~----~~~----~~~~~~~l~~~~--~g~~~~~~~~~~~i 121 (319)
.+|...+.+++|+|+++++++++.|+.|++ |+..+.. ... +...+.+++|++ +++++++++.++.|
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~i----w~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKV----FKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEE----EEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEE----EECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 578889999999999999999999999999 8876542 222 234678999998 58899999999999
Q ss_pred EEEcC-CC---------cEEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeec
Q psy13998 122 QVFQS-DG---------TFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG 189 (319)
Q Consensus 122 ~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (319)
++||. .+ +.+..+ ..+...+.+++++|+ ++++++++.++.|++||+........-.......
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTL------NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEE------CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred EEEecCCCcccccccCcceeeee------cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 99994 33 334444 456677899999998 9999999999999999987432111001111110
Q ss_pred c-cCCcCCCCCCceeEEEcCC---CcEEEEeCCCCeEEEEeCC-CCE--EEEeCCCCCCcccccCcceEEEcCCC----c
Q psy13998 190 S-MGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHRVQIFDVN-GRV--ITSFGSEGSEEGQLKFPRGVAVDDQG----Y 258 (319)
Q Consensus 190 ~-~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g----~ 258 (319)
. ......+...+.+++++|+ +.+++++..++.+..++.. +.. +..+ .++...+.+++++|++ +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL------PGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC------CCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec------CCCCcceeEEEECCCCCCcce
Confidence 0 0111244566788999987 7888888888888777754 333 3333 4566678999999998 8
Q ss_pred EEEEeCCCCEEEEEcCCC-----------------------------------------------ceEEeecccCCCCCC
Q psy13998 259 ISVGDSGNNRIQIFTPDG-----------------------------------------------QFLRAFGCWGSGDGE 291 (319)
Q Consensus 259 ~~v~~~~~~~i~~~~~~g-----------------------------------------------~~~~~~~~~~~~~~~ 291 (319)
++++++.|+.|++|+... +.+..+ .+|
T Consensus 232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h 305 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH------DDH 305 (351)
T ss_dssp EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE------CTT
T ss_pred EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE------ecc
Confidence 999999999999999432 233334 457
Q ss_pred CCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 292 FKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 292 ~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
...+++++|+|+++++++++.|+.|++|
T Consensus 306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 306 NGEVWSVSWNLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp SSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 7789999999999999999999999998
No 56
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.95 E-value=1.9e-25 Score=173.84 Aligned_cols=231 Identities=23% Similarity=0.316 Sum_probs=177.3
Q ss_pred CCcceEEcCCCcEEE-EeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEE
Q psy13998 57 WPRGIAVGPDNSIVV-ADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFV 131 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~-~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 131 (319)
.|.+|+++++|++|+ ++..++.|.+ |+..+..... ....|.+++++++|++|+++. ++.|.+|+.++...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVK----LATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEE----ECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEE----ecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence 899999999999999 7788899999 7664332221 234789999999999999988 88999999877655
Q ss_pred EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998 132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211 (319)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 211 (319)
..+. ......|.+++++++|++|+++..++.|.+|+..+.. ... . .......|.+++++++|+
T Consensus 100 ~~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~------~~~-~-----~~~~~~~p~~i~~~~~g~ 162 (270)
T 1rwi_B 100 TVLP-----FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT------QTV-L-----PFTGLNDPDGVAVDNSGN 162 (270)
T ss_dssp EECC-----CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS------CEE-C-----CCCSCCSCCCEEECTTCC
T ss_pred eeee-----cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce------eEe-e-----ccccCCCceeEEEeCCCC
Confidence 4442 1233578999999999999999888999999754321 111 0 022345688999999999
Q ss_pred EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCC
Q psy13998 212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291 (319)
Q Consensus 212 ~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~ 291 (319)
+|+++..++.|++|+.++....... ......|.+|+++++|++|+++..++.|.+|+.++....... ..+
T Consensus 163 l~v~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-----~~~ 232 (270)
T 1rwi_B 163 VYVTDTDNNRVVKLEAESNNQVVLP-----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-----FTG 232 (270)
T ss_dssp EEEEEGGGTEEEEECTTTCCEEECC-----CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-----CCS
T ss_pred EEEEECCCCEEEEEecCCCceEeec-----ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-----cCC
Confidence 9999988899999998776544431 223367899999999999999999999999998776544431 234
Q ss_pred CCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 292 FKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 292 ~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
...|.+++++++|++|+++..+++|++|
T Consensus 233 ~~~p~~i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 233 LNTPLAVAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp CSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CCCceeEEECCCCCEEEEECCCCEEEEE
Confidence 4679999999999999999999999875
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.4e-25 Score=184.32 Aligned_cols=243 Identities=12% Similarity=0.143 Sum_probs=187.7
Q ss_pred cCCCCcceEEcCCCc-EEEEeCCCCeEEEecccccc----ccce------eeEE--------------ecCceeeEEcCC
Q psy13998 54 CFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDL----KTNC------VFLA--------------FTWPRGIAVGPD 108 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~----~~~~------~~~~--------------~~~~~~l~~~~~ 108 (319)
|...+.+++|+|+|+ ++++++.++.|++ |+. .+.. .... ...+.+++|+|+
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~i----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARL----ARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEE----EEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEE----EEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 457899999999999 9999999999999 887 5554 1221 226789999999
Q ss_pred CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeee--------
Q psy13998 109 NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS-------- 180 (319)
Q Consensus 109 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~-------- 180 (319)
++++++++.++.|.+|+.+++.+..+ ..+...+.+++++|+++++++++.++.|.+|++.......
T Consensus 120 ~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNKTGALLNVL------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp SSEEEEEETTSCEEEEETTSCEEEEE------CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeec------cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 99999999999999999888888877 4566788999999999999999999999999986532110
Q ss_pred -----------------------cCce--------eeeeccc-----CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEE
Q psy13998 181 -----------------------DGTF--------VGKFGSM-----GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI 224 (319)
Q Consensus 181 -----------------------~~~~--------~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~ 224 (319)
++.+ +..+... .....+...+.+++++|+++++++++.++.|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp ------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 0000 0000000 001234456788999999999999999999999
Q ss_pred EeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998 225 FDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMS 302 (319)
Q Consensus 225 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (319)
|+. .++.+..+ ..+...+.+++++|++ ++++++.++.|++|+. +++.+..+ ..+...+.+++++|
T Consensus 274 ~d~~~~~~~~~~------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 274 WHGGNGNSQNCF------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS------IVDGVPIFAGRISQ 340 (425)
T ss_dssp ECSSSBSCSEEE------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE------ECTTCCEEEEEECT
T ss_pred EECCCCccceEe------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec------ccCCccEEEEEEcC
Confidence 996 45555555 4455678899999999 8889999999999994 67777776 45667899999999
Q ss_pred CCcEEEEeCCCCeEEeC
Q psy13998 303 NGNILVCDRENHRIQVF 319 (319)
Q Consensus 303 ~g~~~v~~~~~~~i~v~ 319 (319)
+++++++++.++.|++|
T Consensus 341 ~~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVY 357 (425)
T ss_dssp TSSEEEEEETTSCEEEE
T ss_pred CCCEEEEEECCCeEEEE
Confidence 99999999999999997
No 58
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2.7e-27 Score=193.27 Aligned_cols=276 Identities=7% Similarity=0.036 Sum_probs=193.2
Q ss_pred cccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT 90 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~ 90 (319)
...|.+++|+|++.+++++..+..+.+|+.. .+|...+.+++|+|+++++++++.|+.|++ |+..+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v----wd~~~ 86 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV----YEKRP 86 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE----C----
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE----EEcCC
Confidence 5679999999999999998777666665433 346678899999999999999999999999 88876
Q ss_pred ce---eeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCC-c---EEEEecCCCccCCCCCCceeEEEeCCCeEE
Q psy13998 91 NC---VFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDG-T---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 159 (319)
Q Consensus 91 ~~---~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 159 (319)
.. ... +...+.+++++|+++++++++.++.|++|+... + ....+. ..|...+.+++++|+++++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-----RPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC-----SSCCSCEEEEEECTTSSEE
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee-----cccCCCeEEEEEcCCCCEE
Confidence 55 222 334678999999999999999999999999443 3 234442 1256788999999999999
Q ss_pred EEeCCCCEEEEEecCCceeee------------cCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC
Q psy13998 160 VSDSNNHRVQIFDVNGRVFQS------------DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 227 (319)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~ 227 (319)
++++.++.|++||+....... .++.+..+ .+...+.+++++|+++++++++.++.|++||.
T Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-------cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 999999999999985321110 01111111 45566889999999999999999999999995
Q ss_pred C-CCE----EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-Cc--eEEeeccc--------------
Q psy13998 228 N-GRV----ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQ--FLRAFGCW-------------- 285 (319)
Q Consensus 228 ~-~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~--~~~~~~~~-------------- 285 (319)
. ++. +..+ ..+...+.+++|+|+|+++++++.++.+ +|+.. +. ....+...
T Consensus 235 ~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (377)
T 3dwl_C 235 SAPEQPPRALITV------KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE 307 (377)
T ss_dssp CSTTSCEEECCCE------ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred CCCCCcceeeEee------cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccc
Confidence 4 443 3333 4455668899999999999998766655 66633 11 01111000
Q ss_pred ------------------------------CCCCCCCCCcceEEEccC-Cc---EEEEeCCCCeEEeC
Q psy13998 286 ------------------------------GSGDGEFKGLEGVAVMSN-GN---ILVCDRENHRIQVF 319 (319)
Q Consensus 286 ------------------------------~~~~~~~~~~~~l~~~~~-g~---~~v~~~~~~~i~v~ 319 (319)
.....|...+.++++.++ +. .+++++.|+.|++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iW 375 (377)
T 3dwl_C 308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLW 375 (377)
T ss_dssp CCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEe
Confidence 001126677888886543 33 69999999999998
No 59
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.4e-26 Score=180.24 Aligned_cols=257 Identities=12% Similarity=0.227 Sum_probs=201.2
Q ss_pred cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN- 91 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~- 91 (319)
...|.++++ |++.++++++.+..+..|+...+ |...+.+++++|+++++++++.++.|++ |++...
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~----~~~~~~~ 92 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING----VPLFATS 92 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE----EETTCCT
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE----EEeeecC
Confidence 577888999 89999999988888877765443 4567899999999999999999999999 655332
Q ss_pred --eeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC
Q psy13998 92 --CVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN 164 (319)
Q Consensus 92 --~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~ 164 (319)
.... +...+.++++ +++++++++.++.|.+|| .++....+ ..+...+..+++.+ +++++++++.
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 93 GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNL------QAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEE------ECCSSCEEEEEEEETTTTEEEEEET
T ss_pred CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEec------ccCCCceeEEEEccCCCCEEEEEEC
Confidence 2222 2235677887 567888899999999999 55555555 34556778899888 8899999999
Q ss_pred CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcc
Q psy13998 165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEG 243 (319)
Q Consensus 165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~ 243 (319)
++.|.+||.. +....+. ..+...+.++++++++. +++++.++.|++||. +++.+..+ ..
T Consensus 164 d~~i~i~d~~--------~~~~~~~-----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~------~~ 223 (313)
T 3odt_A 164 DKTIKLWQND--------KVIKTFS-----GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY------EG 223 (313)
T ss_dssp TSCEEEEETT--------EEEEEEC-----SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE------EC
T ss_pred CCCEEEEecC--------ceEEEEe-----ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh------hc
Confidence 9999999954 2333331 12445678899999988 778888999999996 57777777 45
Q ss_pred cccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 244 QLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 244 ~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+...+.+++++|++. +++++.++.|++|+ .+++.+..+ ..+...+.+++++|+++ +++++.|+.|++|
T Consensus 224 ~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw 292 (313)
T 3odt_A 224 HESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVI------TLPAISIWSVDCMSNGD-IIVGSSDNLVRIF 292 (313)
T ss_dssp CSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEE------ECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred CCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEE------eccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence 666789999999985 67788899999999 577777777 45667899999999998 5567889999998
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=1.6e-25 Score=185.31 Aligned_cols=291 Identities=10% Similarity=0.034 Sum_probs=204.9
Q ss_pred hccchhhhhhhhhhc-ccccccCCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCC
Q psy13998 7 AKNINSCFLLQTLLV-SGIGQVGTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNH 77 (319)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~ 77 (319)
.++..++.....+.. ..+....++|++.+++++..+..+..|+.. .+|...+.+++|+|+++++++++.|+
T Consensus 82 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 161 (420)
T 3vl1_A 82 LFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDM 161 (420)
T ss_dssp EEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCC
Confidence 445555555544442 333444678999999998887777777644 35667899999999999999999999
Q ss_pred eEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccC-----------
Q psy13998 78 RVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA----------- 141 (319)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~----------- 141 (319)
.|++ |++.+......+ ..+.+++++|+++++++++.++.|++|| .+++.+..+.......
T Consensus 162 ~i~i----wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 237 (420)
T 3vl1_A 162 QLKI----WSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVG 237 (420)
T ss_dssp EEEE----EETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEEC
T ss_pred eEEE----EeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecC
Confidence 9999 888766554433 3678999999999999999999999999 5677776664321100
Q ss_pred -------CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EE
Q psy13998 142 -------GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VI 213 (319)
Q Consensus 142 -------~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~ 213 (319)
.+...+.+++++|+++++++++.++.|.+||+... +.+..+. ..+...+.+++++|++. ++
T Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~-----~~~~~~v~~~~~~~~~~~~l 306 (420)
T 3vl1_A 238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK------EQTIQLP-----SKFTCSCNSLTVDGNNANYI 306 (420)
T ss_dssp CCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC------CEEEEEC-----CTTSSCEEEEEECSSCTTEE
T ss_pred CcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC------ceeEEcc-----cccCCCceeEEEeCCCCCEE
Confidence 01234455666889999999999999999998743 3333321 23445678999999997 99
Q ss_pred EEeCCCCeEEEEeCC-CC-EEEEeCCCCCCcc-cccCcceEEEcCCCcEEEEeCCCCEEEEEcCCC----ceEEeecccC
Q psy13998 214 VSDSNNHRVQIFDVN-GR-VITSFGSEGSEEG-QLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG----QFLRAFGCWG 286 (319)
Q Consensus 214 v~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~-~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g----~~~~~~~~~~ 286 (319)
++++.++.|++||.. ++ .+..+ .. +...+..+.+ ++++++++++.|+.|++|+... +.+.......
T Consensus 307 ~~g~~dg~i~vwd~~~~~~~~~~~------~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 379 (420)
T 3vl1_A 307 YAGYENGMLAQWDLRSPECPVGEF------LINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPT 379 (420)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEE------EESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCE
T ss_pred EEEeCCCeEEEEEcCCCcCchhhh------hccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCcc
Confidence 999999999999964 32 23444 22 2334455544 5788999999999999999432 1111111111
Q ss_pred CCCCCCCCcceEEEccCCc---EEEEeCCCCeEEeC
Q psy13998 287 SGDGEFKGLEGVAVMSNGN---ILVCDRENHRIQVF 319 (319)
Q Consensus 287 ~~~~~~~~~~~l~~~~~g~---~~v~~~~~~~i~v~ 319 (319)
....+...+.+++|+|++. .+++.+.++.+.+|
T Consensus 380 ~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 380 FLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY 415 (420)
T ss_dssp EECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred EEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence 1134667899999999998 55555667888887
No 61
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=2.2e-25 Score=184.48 Aligned_cols=260 Identities=11% Similarity=0.153 Sum_probs=193.5
Q ss_pred cccCCCccchhccccceeeeecccCCCCC----------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee
Q psy13998 25 GQVGTTPRSQYLQKRRLQFKIGSRGSEPG----------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF 94 (319)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~ 94 (319)
..++||+++ +|+.+ .+.++.+|+...| |-..|.+|+|+|+|+++++++.|+.|++ |+..+...+
T Consensus 109 ~~l~wS~~n-~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~i----Wd~~~~~~~ 182 (420)
T 4gga_A 109 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL----WDVQQQKRL 182 (420)
T ss_dssp BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEE----EETTTTEEE
T ss_pred eeEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEE----EEcCCCcEE
Confidence 446666654 44443 4667777765544 3356899999999999999999999999 998877776
Q ss_pred EEec----CceeeEEcCCCcEEEEcCCCCeEEEEcCC--CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEE
Q psy13998 95 LAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 168 (319)
Q Consensus 95 ~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i 168 (319)
..+. .+.+++ .++.++++++.++.+.+|+.. ...+..+ .+|...+..+.+.++++++++++.++.+
T Consensus 183 ~~~~~h~~~v~~~s--~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~------~~h~~~~~~~~~~~~g~~l~s~~~D~~v 254 (420)
T 4gga_A 183 RNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATL------SGHSQEVCGLRWAPDGRHLASGGNDNLV 254 (420)
T ss_dssp EEECCCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEeCCCCceEEEe--eCCCEEEEEeCCCceeEeeecccceeeEEe------cccccceeeeeecCCCCeeeeeeccccc
Confidence 6443 334444 457899999999999999933 3444444 4566778999999999999999999999
Q ss_pred EEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEE--eCCCCeEEEEeC-CCCEEEEeCCCCCCccc
Q psy13998 169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVS--DSNNHRVQIFDV-NGRVITSFGSEGSEEGQ 244 (319)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~--~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~ 244 (319)
.+|+....... ...+... ..+...+.+++++|.+ .++++ ++.|+.|++||. ++.....+. .
T Consensus 255 ~i~~~~~~~~~--~~~~~~~------~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-------~ 319 (420)
T 4gga_A 255 NVWPSAPGEGG--WVPLQTF------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-------A 319 (420)
T ss_dssp EEEESSCCSSC--SCCSEEE------CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-------C
T ss_pred eEEeecccccc--ceeeeee------cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-------c
Confidence 99998642110 0111111 3344567889999865 55544 457899999996 555555542 2
Q ss_pred ccCcceEEEcCCCcEEEEe--CCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 245 LKFPRGVAVDDQGYISVGD--SGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 245 ~~~~~~i~~~~~g~~~v~~--~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
...+..+.++++++.++++ ..++.|++|| .+++.+..+ .+|...+.+++|+|||+++++++.|++|++|
T Consensus 320 ~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l------~gH~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 320 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL------KGHTSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 3357788999998766654 3689999999 578888888 6888999999999999999999999999998
No 62
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=1e-25 Score=185.66 Aligned_cols=276 Identities=14% Similarity=0.147 Sum_probs=202.4
Q ss_pred cccccccCCCc-cchhccccceeeeecccCCCC---------------------CcCCCCcceEEcC-CCcEEEEeCCCC
Q psy13998 21 VSGIGQVGTTP-RSQYLQKRRLQFKIGSRGSEP---------------------GCFTWPRGIAVGP-DNSIVVADSSNH 77 (319)
Q Consensus 21 ~~~i~~~~~~~-~~~~l~~~~~~~~~~~~~~~~---------------------~~~~~~~~v~~~~-~g~~~~~~~~~~ 77 (319)
...|.+++++| ++.+++++..+..+..|+... +|...+.+++|+| +++++++++.++
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 57899999999 999999988887777775543 3667889999999 777999999999
Q ss_pred eEEEeccccccccceeeEEec---CceeeEEcCC---CcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeE
Q psy13998 78 RVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPD---NSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYI 150 (319)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~---g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 150 (319)
.|++ |+..+......+. .+..+.+.+. +.++++++.++.|.+|| .+++.+..+ ..+...+.++
T Consensus 123 ~i~i----wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------~~~~~~v~~~ 192 (408)
T 4a11_B 123 TLKV----WDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL------QGHRQEILAV 192 (408)
T ss_dssp EEEE----EETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE------CCCCSCEEEE
T ss_pred eEEE----eeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee------cCCCCcEEEE
Confidence 9999 8887766655443 4567788774 45889999999999999 556666666 4566778999
Q ss_pred EEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeec---------ccCCcCCCCCCceeEEEcCCCcEEEEeCCCC
Q psy13998 151 AVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG---------SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220 (319)
Q Consensus 151 ~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~ 220 (319)
+++|++. ++++++.++.|++||++... ..+..+. .......+...+.+++++|+++++++++.++
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 267 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRAS-----GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSS-----CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCC-----cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence 9999887 68899999999999987421 1111110 0011134556678999999999999999999
Q ss_pred eEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEc-CCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcce
Q psy13998 221 RVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEG 297 (319)
Q Consensus 221 ~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~-~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 297 (319)
.|++||.. ++......... ............. ..+..+++...++.|++|+ .+++.+..+ .+|...+.+
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~------~~~~~~v~~ 339 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKV--CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML------KGHYKTVDC 339 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCC--CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE------CCCSSCEEE
T ss_pred eEEEEECCCCccceeccccc--cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee------ccCCCeEEE
Confidence 99999964 43322221110 0011111112222 2234455556789999999 578888888 678888999
Q ss_pred EEEccCCcEEEEeCCCCeEEeC
Q psy13998 298 VAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 298 l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
++|+|+++++++++.|+.|++|
T Consensus 340 ~~~s~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 340 CVFQSNFQELYSGSRDCNILAW 361 (408)
T ss_dssp EEEETTTTEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEECCCCeEEEE
Confidence 9999999999999999999998
No 63
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.2e-25 Score=180.88 Aligned_cols=238 Identities=13% Similarity=0.123 Sum_probs=182.6
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc--cceeeEE----ecCceeeEEcCC--CcEEEEcCCCCeEEE
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK--TNCVFLA----FTWPRGIAVGPD--NSIVVADSSNHRVQV 123 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~----~~~~~~l~~~~~--g~~~~~~~~~~~i~~ 123 (319)
.+|...+.+++|+|+++++++++.++.|++ |+.. +...... ...+.+++|+++ ++++++++.++.|++
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~i----w~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKI----FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEE----EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEE----EecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 577889999999999999999999999999 8875 3333332 336788999877 889999999999999
Q ss_pred Ec-CCCc--EEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998 124 FQ-SDGT--FVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198 (319)
Q Consensus 124 ~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (319)
|| .+++ .+..+ ..+...+.+++++|+ +.++++++.++.|.+||+..... .....+ ..+.
T Consensus 84 wd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~------~~~~ 147 (379)
T 3jrp_A 84 WKEENGRWSQIAVH------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSPIII------DAHA 147 (379)
T ss_dssp EEEETTEEEEEEEE------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC----CCEEEE------ECCT
T ss_pred EEcCCCceeEeeee------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc----eeeEEe------cCCC
Confidence 99 4454 34444 345677899999998 89999999999999999875310 111111 2344
Q ss_pred CCceeEEEcC-------------CCcEEEEeCCCCeEEEEeCC-CC----EEEEeCCCCCCcccccCcceEEEcCC---C
Q psy13998 199 EHPHYIAVSN-------------TNRVIVSDSNNHRVQIFDVN-GR----VITSFGSEGSEEGQLKFPRGVAVDDQ---G 257 (319)
Q Consensus 199 ~~~~~~~~~~-------------~g~~~v~~~~~~~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~i~~~~~---g 257 (319)
..+.+++++| ++.++++++.++.|++||.. +. ....+ ..+...+.+++++|+ +
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL------EGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE------CCCSSCEEEEEECCCCSSS
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE------ecccCcEeEEEECCCCCCC
Confidence 5678899998 68999999999999999953 32 23344 455667899999999 8
Q ss_pred cEEEEeCCCCEEEEEcCCC-c---eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 258 YISVGDSGNNRIQIFTPDG-Q---FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 258 ~~~v~~~~~~~i~~~~~~g-~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.++++++.++.|++|+... . ....... ..+...+.+++|+|+|+++++++.|+.|++|
T Consensus 222 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKE----EKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283 (379)
T ss_dssp EEEEEEETTSCEEEEEESSTTSCCEEEESSS----SCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred CeEEEEeCCCEEEEEeCCCCCccceeeeecc----ccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 9999999999999999543 2 2222211 3356678999999999999999999999998
No 64
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=1.8e-25 Score=186.49 Aligned_cols=290 Identities=11% Similarity=0.088 Sum_probs=197.1
Q ss_pred cccccccCCCccchhccccceeeeecccCCCC-------------------CcC------------CCCcceEEcCCC--
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-------------------GCF------------TWPRGIAVGPDN-- 67 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------~~~------------~~~~~v~~~~~g-- 67 (319)
.+.|.+++|+|++.+++++..+..+.+|+... +|. ..+.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 57899999999999999998877777765332 343 668999999998
Q ss_pred cEEEEeCCCCeEEEeccccccccceee--------------------------------------------EEecCceee
Q psy13998 68 SIVVADSSNHRVQVCFPHFDLKTNCVF--------------------------------------------LAFTWPRGI 103 (319)
Q Consensus 68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~l 103 (319)
.++++++.|+.|++ |+..+.... .+...+.++
T Consensus 108 ~~l~s~s~d~~i~i----w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 108 AQFLLSTNDKTIKL----WKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SEEEEEECSSCEEE----EEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred ceEEEeCCCCeEEE----EecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 78999999999999 776543221 123356889
Q ss_pred EEcCCCcEEEEcCCCCeEEEEcCC--CcEEEEecC-CCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceee
Q psy13998 104 AVGPDNSIVVADSSNHRVQVFQSD--GTFVGKFGS-MGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQ 179 (319)
Q Consensus 104 ~~~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~ 179 (319)
+++|++++++++ .++.|++||.. ++....+.. ......+...+.+++++|++ +++++++.++.|++||++.....
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 999999999988 79999999955 333332211 11123566778999999998 99999999999999998753210
Q ss_pred ecCceeeeecccCC------cCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCc---------
Q psy13998 180 SDGTFVGKFGSMGN------KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEE--------- 242 (319)
Q Consensus 180 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~--------- 242 (319)
. .....+..... ...+...+.+++++|+++++++++. +.|++||.. ++.+..+.......
T Consensus 263 ~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 263 D--RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp C--TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred c--ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 0 00222211100 0011126789999999999998888 999999964 55444442110000
Q ss_pred ccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCC--------------------------CCCCCCCc
Q psy13998 243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGS--------------------------GDGEFKGL 295 (319)
Q Consensus 243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~--------------------------~~~~~~~~ 295 (319)
........++|+|++.++++++.|+.|++||. .++.+........ .......+
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 419 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI 419 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCce
Confidence 00001234999999999999999999999995 4444331111000 00123457
Q ss_pred ceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 296 EGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 296 ~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
..++|+|+++++++++.++ +.+|
T Consensus 420 ~~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 420 LHTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp CEEEECSSSSEEEEECSSC-EEEE
T ss_pred eEEEECCCCCEEEEEecce-eeee
Confidence 8899999999999888776 5554
No 65
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=187.47 Aligned_cols=273 Identities=12% Similarity=0.153 Sum_probs=195.0
Q ss_pred cccccccCCCccchh-ccccce---eeeecccCCCCC---------cCCCCcceEEcCC---CcEEEEeCCCCeEEEecc
Q psy13998 21 VSGIGQVGTTPRSQY-LQKRRL---QFKIGSRGSEPG---------CFTWPRGIAVGPD---NSIVVADSSNHRVQVCFP 84 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~-l~~~~~---~~~~~~~~~~~~---------~~~~~~~v~~~~~---g~~~~~~~~~~~v~~~~~ 84 (319)
...|.+++|+|++.. +..++. +..+..|+...+ |...+.+++|+|+ |+++++++.++.|++
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i--- 94 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI--- 94 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE---
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE---
Confidence 568999999998854 555554 667777754433 4467899999998 689999999999999
Q ss_pred ccccccce-eeEEe----cCceee------EEcCCCcEEEEcCCCCeEEEEcC-CCc-EEEEecCCCccCCCCCCceeEE
Q psy13998 85 HFDLKTNC-VFLAF----TWPRGI------AVGPDNSIVVADSSNHRVQVFQS-DGT-FVGKFGSMGNKAGQLEHPHYIA 151 (319)
Q Consensus 85 ~~~~~~~~-~~~~~----~~~~~l------~~~~~g~~~~~~~~~~~i~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~ 151 (319)
|+..+.. ....+ ..+.++ +++++++++++++.++.|++||. .++ ....+.... ......+.+++
T Consensus 95 -wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~v~~~~ 171 (357)
T 3i2n_A 95 -WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ--GENKRDCWTVA 171 (357)
T ss_dssp -ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT--TSCCCCEEEEE
T ss_pred -EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC--CCCCCceEEEE
Confidence 8887655 33322 345666 45688999999999999999994 443 444443211 11123566777
Q ss_pred ----EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC---CCcEEEEeCCCCeEEE
Q psy13998 152 ----VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN---TNRVIVSDSNNHRVQI 224 (319)
Q Consensus 152 ----~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~i~~ 224 (319)
++++++++++++.++.|.+||++... .... ..+...+.+++++| ++.++++++.++.|++
T Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~-------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMA------LRWE-------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp EECCCC-CCCEEEEEETTSEEEEEETTTTE------EEEE-------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred EEeccCCCCCEEEEEccCCeEEEEECccCc------eeee-------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 67899999999999999999998642 2211 12335678899999 8899999999999999
Q ss_pred EeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC-C-------------------ceEEee
Q psy13998 225 FDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD-G-------------------QFLRAF 282 (319)
Q Consensus 225 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~-g-------------------~~~~~~ 282 (319)
||... +....+... ....+...+.+++++|++. ++++++.++.|++|+.. + +.+..+
T Consensus 239 ~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 239 FDMRTQHPTKGFASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEEETTTEEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred EeCcCCCcccceeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 99542 111111000 0024556789999999987 89999999999999943 2 233444
Q ss_pred cccCCCCCCCCCcceEEEccCCcEEE-EeCCCCeEEeC
Q psy13998 283 GCWGSGDGEFKGLEGVAVMSNGNILV-CDRENHRIQVF 319 (319)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~g~~~v-~~~~~~~i~v~ 319 (319)
..+...+.+++|+|+|++++ +++.|+.|++|
T Consensus 318 ------~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 318 ------TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp ------ECCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred ------ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence 45777899999999999666 89999999998
No 66
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=4.3e-25 Score=175.88 Aligned_cols=264 Identities=11% Similarity=0.122 Sum_probs=192.7
Q ss_pred ccccCCCccchhccccceeeeecccCCCCC----------cCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998 24 IGQVGTTPRSQYLQKRRLQFKIGSRGSEPG----------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV 93 (319)
Q Consensus 24 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~ 93 (319)
+..++||+++ +|+.+ .+.++.+|+...+ |-..+.+|+++|+|+++++++.|+.|++ |+..+.+.
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~i----w~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL----WDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEE----EETTTTEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEE----eecCCcee
Confidence 4567899876 55554 5677777865544 3356889999999999999999999999 99888777
Q ss_pred eEEec--CceeeEEcCCCcEEEEcCCCCeEEEEcCC--CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEE
Q psy13998 94 FLAFT--WPRGIAVGPDNSIVVADSSNHRVQVFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ 169 (319)
Q Consensus 94 ~~~~~--~~~~l~~~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~ 169 (319)
+..+. .....++++++.++++++.++.+..|+.. ...+..+ .++...+..+++.++++++++++.++.|+
T Consensus 102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 175 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL------SGHSQEVCGLRWAPDGRHLASGGNDNLVN 175 (318)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEE------cCccCceEEEEEcCCCCEEEEEecCccee
Confidence 66443 22334455567889999999999999833 2344444 45667778899999999999999999999
Q ss_pred EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEE--EEeCCCCeEEEEeCCCCEEEEeCCCCCCccccc
Q psy13998 170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVI--VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLK 246 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~--v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 246 (319)
+||+....... ...... ..+...+..+++.+.+ .++ .++..++.|++|+......... ..+..
T Consensus 176 iwd~~~~~~~~--~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~------~~~~~ 241 (318)
T 4ggc_A 176 VWPSAPGEGGW--VPLQTF------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA------VDAHS 241 (318)
T ss_dssp EEESSCBTTBS--CCSEEE------CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE------EECSS
T ss_pred EEECCCCcccc--cceeee------cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc------cccee
Confidence 99987421100 011111 2233456678888765 443 3556788999999654333332 22334
Q ss_pred CcceEEEcCCCcEEEE--eCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 247 FPRGVAVDDQGYISVG--DSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 247 ~~~~i~~~~~g~~~v~--~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.+..+++.+++..+++ +..++.|++|| .+++.+..+ .+|...+++++|+|||+++++++.|+.|++|
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l------~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL------KGHTSRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 5678889998875554 34789999999 578888888 6788999999999999999999999999998
No 67
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.6e-26 Score=189.81 Aligned_cols=266 Identities=12% Similarity=0.093 Sum_probs=191.3
Q ss_pred cccccccCCCccchhccccceeeeec---ccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee--E
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIG---SRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF--L 95 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~--~ 95 (319)
...+..++|||+|+++++++.+.++. ......+|...+..|+|+|+| .++.+.+ |+.+..... .
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~----~~~~~~~~~~~~ 83 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-------FENKLDF----ELAQQNGLLNSQ 83 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-------CCCTTTT----SCCCSSCSSTTS
T ss_pred hccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC-------CcceEEE----EeCCCceEeecC
Confidence 57899999999999999999888874 112235788899999999999 3444444 443221111 1
Q ss_pred EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998 96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG 175 (319)
Q Consensus 96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~ 175 (319)
+-..+.+++|+|+|+.+++++.++.|++|+..+ .+..+. .. ..-....+.+++|+|+|+++++++.|++|++|++.+
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~-~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SK-GNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CS-SCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CC-CccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 234679999999999999999999999999555 444442 11 000123578999999999999999999999999986
Q ss_pred ceeeecCc--eeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEE----EEeCCCCCCcccccCcc
Q psy13998 176 RVFQSDGT--FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVI----TSFGSEGSEEGQLKFPR 249 (319)
Q Consensus 176 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 249 (319)
..... .+ .+..+... ..+|...+.+++++|+| +++++.++.|++|+.++... ..+. ..+...+.
T Consensus 161 ~~l~~-~~~i~l~ti~~~--~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-----~~h~~~V~ 230 (588)
T 2j04_A 161 NSENT-PEFYFESSIRLS--DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-----NASRRKIT 230 (588)
T ss_dssp CTTTC-CCCEEEEEEECS--CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-----CCCSSCCC
T ss_pred Ccccc-ccceeeeeeecc--cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-----ccccCcEE
Confidence 41100 00 12222111 13355788999999999 66777799999999765442 2331 13445689
Q ss_pred eEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEE--ccCCcEEEEeCCCCeEEeC
Q psy13998 250 GVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAV--MSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 250 ~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~~g~~~v~~~~~~~i~v~ 319 (319)
+++|+ |+.+++++ ++.|++|+..+.....+. .+|...+.++++ +||+..++++..+|. ++|
T Consensus 231 svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-----~gh~~~V~~va~~~s~d~~~La~a~edG~-klw 293 (588)
T 2j04_A 231 DLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-----TGSLENFHIIPLNHEKESTILLMSNKTSY-KVL 293 (588)
T ss_dssp CEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-----CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred EEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-----cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence 99998 57777776 599999997766664442 368888999999 999999999999999 776
No 68
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2e-26 Score=188.15 Aligned_cols=232 Identities=9% Similarity=0.043 Sum_probs=174.2
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc--eeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CC
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN--CVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DG 128 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~ 128 (319)
..+.+++|+|+|+++++++.++.|++ |+..+. .... +...+.+++++|+++++++++.++.|++||. ++
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~i----w~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVEL----YEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCE----EEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEE----EEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 57899999999999999999999999 888765 3332 2346789999999999999999999999994 33
Q ss_pred c---EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998 129 T---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 205 (319)
Q Consensus 129 ~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (319)
+ ....+ ..+...+.+++++|+++++++++.++.|++|+++.... ......+. ..+...+.+++
T Consensus 88 ~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~-----~~h~~~v~~~~ 153 (377)
T 3dwl_C 88 GTWKQTLVL------LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND---WWVSKHLK-----RPLRSTILSLD 153 (377)
T ss_dssp -CCCCEEEC------CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--------CCCCEEEC-----SSCCSCEEEEE
T ss_pred CceeeeeEe------cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc---ceeeeEee-----cccCCCeEEEE
Confidence 3 23333 44667889999999999999999999999999875310 00122221 11556788999
Q ss_pred EcCCCcEEEEeCCCCeEEEEeCC-------------------CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998 206 VSNTNRVIVSDSNNHRVQIFDVN-------------------GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN 266 (319)
Q Consensus 206 ~~~~g~~~v~~~~~~~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~ 266 (319)
++|+++++++++.++.|++||.. ++.+..+ .+...+.+++++|+|+++++++.+
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-------PSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-------CCSSSEEEEEECTTSSCEEEEETT
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-------cCCceEEEEEECCCCCEEEEEeCC
Confidence 99999999999999999999963 1112111 345568899999999999999999
Q ss_pred CEEEEEcC-CCce----EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998 267 NRIQIFTP-DGQF----LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQV 318 (319)
Q Consensus 267 ~~i~~~~~-~g~~----~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v 318 (319)
+.|++|+. +++. +..+ ..+...+.+++|+|+|+++++++.++.+..
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 277 (377)
T 3dwl_C 227 SSVTIAYPSAPEQPPRALITV------KLSQLPLRSLLWANESAIVAAGYNYSPILL 277 (377)
T ss_dssp TEEC-CEECSTTSCEEECCCE------ECSSSCEEEEEEEETTEEEEEESSSSEEEE
T ss_pred CcEEEEECCCCCCcceeeEee------cCCCCceEEEEEcCCCCEEEEEcCCcEEEE
Confidence 99999994 4544 4444 467778999999999999999988877644
No 69
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=2.5e-25 Score=195.45 Aligned_cols=237 Identities=17% Similarity=0.299 Sum_probs=187.2
Q ss_pred CCCCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccce-----eeE----EecCceeeEEcCCCcEEEEcCCCC
Q psy13998 50 SEPGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNC-----VFL----AFTWPRGIAVGPDNSIVVADSSNH 119 (319)
Q Consensus 50 ~~~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~----~~~~~~~l~~~~~g~~~~~~~~~~ 119 (319)
...+|...|.+|++++++ +++++++.|++|++ |++.+.. ... |...+.+++++++++++++++.++
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~----W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIIL----WKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEE----EECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEE----EEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 346888999999999864 79999999999999 7765321 111 334678999999999999999999
Q ss_pred eEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998 120 RVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198 (319)
Q Consensus 120 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (319)
.|++|| .+++....+ .+|...+.+++++|+++++++++.|+.|++||..+.. ...... ....|.
T Consensus 453 ~v~vwd~~~~~~~~~~------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-------~~~~~~--~~~~h~ 517 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRF------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-------KYTISE--GGEGHR 517 (694)
T ss_dssp EEEEEETTTTEEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-------EEEECS--STTSCS
T ss_pred cEEEEECCCCcceeEE------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-------ceeecc--CCCCCC
Confidence 999999 566666666 5677789999999999999999999999999986531 111111 113455
Q ss_pred CCceeEEEcCCC--cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-
Q psy13998 199 EHPHYIAVSNTN--RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP- 274 (319)
Q Consensus 199 ~~~~~~~~~~~g--~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~- 274 (319)
..+.+++++|++ .++++++.++.|++||. +++....+ .+|...+.+++++|+|+++++++.|+.|++||.
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~------~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL------AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 668899999976 57899999999999996 45666666 566778899999999999999999999999994
Q ss_pred CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 275 DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+++.+..+ .+...+.+++|+|++.+++++. ++.|++|
T Consensus 592 ~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~-~~~i~iw 628 (694)
T 3dm0_A 592 EGKKLYSL-------EANSVIHALCFSPNRYWLCAAT-EHGIKIW 628 (694)
T ss_dssp TTEEEECC-------BCSSCEEEEEECSSSSEEEEEE-TTEEEEE
T ss_pred CCceEEEe-------cCCCcEEEEEEcCCCcEEEEEc-CCCEEEE
Confidence 67666655 2335689999999988777765 4568887
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=2.5e-25 Score=199.02 Aligned_cols=264 Identities=14% Similarity=0.220 Sum_probs=208.9
Q ss_pred cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
...|.+++|+|++.+++.+..+..+.+|+...+ |-..+.+++|+|+|+++++++.++.|++ |+..+..
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v----w~~~~~~ 88 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV----FNYNTGE 88 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE----EETTTCC
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE----EECCCCc
Confidence 567999999999999999888877777765443 5577899999999999999999999999 8887776
Q ss_pred eeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcC-CC-cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC
Q psy13998 93 VFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQS-DG-TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN 165 (319)
Q Consensus 93 ~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~ 165 (319)
....+ ..+.+++|+|++..+++++.++.|.+|+. .+ .....+ .++...+.+++++| +++.+++++.+
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF------EGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE------ECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE------cCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 65533 36789999999999999999999999994 34 444444 34556789999999 88999999999
Q ss_pred CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC--CCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCc
Q psy13998 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEE 242 (319)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~ 242 (319)
+.|.+|++.+. .....+. ..+...+..++++| ++.++++++.++.|++||. ++..+..+ .
T Consensus 163 g~v~vwd~~~~------~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~ 225 (814)
T 3mkq_A 163 RTVKVWSLGQS------TPNFTLT-----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL------E 225 (814)
T ss_dssp SEEEEEETTCS------SCSEEEE-----CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE------E
T ss_pred CeEEEEECCCC------cceeEEe-----cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE------c
Confidence 99999998642 2222221 12224567889998 8899999999999999995 55666666 4
Q ss_pred ccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc--EEEEeCCCCeEEe
Q psy13998 243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQV 318 (319)
Q Consensus 243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i~v 318 (319)
.+...+.+++++|++.++++++.++.|++|+. +++.+..+ ..+...+.+++++|+|. +++++.. +.+.+
T Consensus 226 ~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~ 297 (814)
T 3mkq_A 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL------NVGLERSWCIATHPTGRKNYIASGFD-NGFTV 297 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE------CCSSSSEEEEEECTTCGGGEEEEEET-TEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe------ecCCCcEEEEEEccCCCceEEEEEeC-CCEEE
Confidence 55667889999999999999999999999995 57777777 55667899999999987 4555554 44444
No 71
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=4e-25 Score=206.06 Aligned_cols=271 Identities=11% Similarity=0.136 Sum_probs=216.1
Q ss_pred cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
...|.+++|+|++.++++++.+..+..|+... +|...+.+++|+|+|+++++++.|+.|++ |+..+..
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v----wd~~~~~ 690 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI----WDSATGK 690 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE----EETTTCC
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE----EECCCCc
Confidence 46788999999999999998888888776543 45678999999999999999999999999 9888776
Q ss_pred eeEEe----cCceeeEEcCC--CcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998 93 VFLAF----TWPRGIAVGPD--NSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 165 (319)
Q Consensus 93 ~~~~~----~~~~~l~~~~~--g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~ 165 (319)
....+ ..+.+++|+++ +.++++++.++.|.+|| .+++....+ .+|...+.+++++|+++++++++.+
T Consensus 691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~------~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM------FGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE------CCCSSCEEEEEECSSTTEEEEEESS
T ss_pred eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee------cCCCCCEEEEEEecCCCEEEEEECC
Confidence 66544 35688999984 45888999999999999 667777766 4566788999999999999999999
Q ss_pred CEEEEEecCCceeeecCceeeeeccc-------CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCC
Q psy13998 166 HRVQIFDVNGRVFQSDGTFVGKFGSM-------GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGS 237 (319)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~ 237 (319)
+.|++||+.... ....+... .........+.+++++|+|..++++. ++.+.+|+. .+.....+.
T Consensus 765 g~v~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~- 836 (1249)
T 3sfz_A 765 GTLRLWDVRSAN------ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIH- 836 (1249)
T ss_dssp SEEEEEEGGGTE------EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEE-
T ss_pred CeEEEEeCCCCc------ccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEc-
Confidence 999999987432 22211110 00111223567789999998887776 689999995 455555542
Q ss_pred CCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998 238 EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI 316 (319)
Q Consensus 238 ~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i 316 (319)
.++...+..++++|++.++++++.++.|.+|+. +++.+..+ .+|...+.+++|+|+|+++++++.|+.|
T Consensus 837 ----~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~------~~h~~~v~~v~~spdg~~l~s~s~dg~v 906 (1249)
T 3sfz_A 837 ----TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC------RGHLSWVHGVMFSPDGSSFLTASDDQTI 906 (1249)
T ss_dssp ----CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ----CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec------CCCccceEEEEECCCCCEEEEEeCCCeE
Confidence 245567889999999999999999999999994 56667777 5788899999999999999999999999
Q ss_pred EeC
Q psy13998 317 QVF 319 (319)
Q Consensus 317 ~v~ 319 (319)
++|
T Consensus 907 ~vw 909 (1249)
T 3sfz_A 907 RVW 909 (1249)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=9e-25 Score=195.46 Aligned_cols=236 Identities=16% Similarity=0.226 Sum_probs=192.3
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S 126 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~ 126 (319)
.+|-..+.+++|+|+|+++++++.++.|++ |+..+......+ ..+.+++|+|+++++++++.++.|.+|+ .
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~i----wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEI----WNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEE----EETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEE----EECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 466788999999999999999999999999 888776665543 3568999999999999999999999999 6
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
+++.+..+ ..|...+.+++|+|++.++++++.++.|.+|++++. ......+ ..+...+.++++
T Consensus 86 ~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-----~~~~~~~------~~~~~~v~~~~~ 148 (814)
T 3mkq_A 86 TGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-----WALEQTF------EGHEHFVMCVAF 148 (814)
T ss_dssp TCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-----SEEEEEE------ECCSSCEEEEEE
T ss_pred CCcEEEEE------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-----ceEEEEE------cCCCCcEEEEEE
Confidence 77777776 456677899999999999999999999999998742 1222222 234456788999
Q ss_pred cC-CCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcC--CCcEEEEeCCCCEEEEEc-CCCceEEe
Q psy13998 207 SN-TNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDD--QGYISVGDSGNNRIQIFT-PDGQFLRA 281 (319)
Q Consensus 207 ~~-~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~--~g~~~v~~~~~~~i~~~~-~~g~~~~~ 281 (319)
+| ++.++++++.++.|++||.. +.....+. ..+...+..++++| ++.++++++.++.|.+|+ .+++.+..
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 223 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEE-----CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEe-----cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 99 78899999999999999964 44333331 12224678899998 889999999999999999 46777777
Q ss_pred ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+ ..+...+.+++++|+|.++++++.|+.|++|
T Consensus 224 ~------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 224 L------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp E------ECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred E------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 7 5677789999999999999999999999997
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=6.2e-25 Score=179.66 Aligned_cols=239 Identities=10% Similarity=0.088 Sum_probs=179.1
Q ss_pred CCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccceeeEE------ecCceeeEEcC-CCcEEEEcCCCCeEEE
Q psy13998 52 PGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNCVFLA------FTWPRGIAVGP-DNSIVVADSSNHRVQV 123 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~l~~~~-~g~~~~~~~~~~~i~~ 123 (319)
.+|...+.+++|+|++ +++++++.|+.|++ |+..+...... ...+.+++|+| +++++++++.++.|++
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~i----wd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIIL----WDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEE----EETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEE----EeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 4677889999999999 89999999999999 88875544432 23568999999 6789999999999999
Q ss_pred EcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998 124 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY 203 (319)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (319)
||..+.....+... ..+...+.+++++|+++++++++.++.|.+||+++. .+..+ ..+...+.+
T Consensus 146 wd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~------~~h~~~v~~ 209 (383)
T 3ei3_B 146 RDFSGSVIQVFAKT---DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-------EIFKE------KLHKAKVTH 209 (383)
T ss_dssp EETTSCEEEEEECC---CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC-------EEEEE------ECSSSCEEE
T ss_pred EECCCCceEEEecc---CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC-------EEEEe------ccCCCcEEE
Confidence 99777766665332 233466899999999999999999999999998653 33333 335567889
Q ss_pred EEEcCCCc-EEEEeCCCCeEEEEeCC-----CCEEEEeCCCCCCcccccCcceEEEcC-CCcEEEEeCCCCEEEEEcC-C
Q psy13998 204 IAVSNTNR-VIVSDSNNHRVQIFDVN-----GRVITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDSGNNRIQIFTP-D 275 (319)
Q Consensus 204 ~~~~~~g~-~~v~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~~-~ 275 (319)
++++|++. ++++++.++.|++||.. +..+..+ .+...+.+++++| ++.++++++.++.|++||. +
T Consensus 210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 99999998 89999999999999964 4455444 2445789999999 9999999999999999994 4
Q ss_pred CceEEeecccC-CCCCCCC----------CcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 276 GQFLRAFGCWG-SGDGEFK----------GLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 276 g~~~~~~~~~~-~~~~~~~----------~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
++.+..+.... ....+.. ....++++|+|++ +++.|+.|++|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iw 335 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIY 335 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEE
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEE
Confidence 44433332110 0011111 2233566666666 77789999988
No 74
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6e-24 Score=172.67 Aligned_cols=235 Identities=11% Similarity=0.106 Sum_probs=183.7
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-S 126 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~ 126 (319)
.+|...+.+++|+|+|+++++++.++.|++ |+..+......+ ..+.+++++|+++++++++.++.|++|| .
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~v----wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASV----WYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEE----EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEE----EeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 467788999999999999999999999999 888776666544 3678999999999999999999999999 6
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCcee-----eecCceeeeecccCCcCC
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVF-----QSDGTFVGKFGSMGNKAG 196 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 196 (319)
+++.+..+. +...+.+++++|++++++++..+ +.|.+|++..... .........+.. ..
T Consensus 105 ~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~ 173 (369)
T 3zwl_B 105 NGQCVATWK-------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT----HE 173 (369)
T ss_dssp TCCEEEEEE-------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC----CT
T ss_pred CCcEEEEee-------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC----Cc
Confidence 677776663 33567999999999999988888 9999999864210 000001111100 11
Q ss_pred CCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-
Q psy13998 197 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT- 273 (319)
Q Consensus 197 ~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~- 273 (319)
....+.+++++|++++++++..++.|++||.. +..+..+ ..+...+.+++++|++.++++++.++.|++||
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI------DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE------ecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 12267889999999999999999999999975 4555665 44556789999999999999999999999999
Q ss_pred CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998 274 PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314 (319)
Q Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~ 314 (319)
.+++.+..+. +...+..++++|+++++++++.++
T Consensus 248 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 248 STLQVLKKYE-------TDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp TTCCEEEEEE-------CSSCEEEEEECSSSSEEEEEECCC
T ss_pred CCCceeeeec-------CCCCceeEEecCCCceEEEeecCC
Confidence 4677777762 455789999999999888887777
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=1.2e-24 Score=178.80 Aligned_cols=250 Identities=12% Similarity=0.071 Sum_probs=183.3
Q ss_pred CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce------eeE----EecCceeeEEcCC----C---cEEE
Q psy13998 51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC------VFL----AFTWPRGIAVGPD----N---SIVV 113 (319)
Q Consensus 51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~------~~~----~~~~~~~l~~~~~----g---~~~~ 113 (319)
..+|...+.+++|+| +++++++.|+.|++ |+..+.. ... +...+.+++++++ + ++++
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~i----w~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKV----WDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEE----EESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEE----EECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 457888999999998 78999999999999 8876654 233 2236689999999 8 8999
Q ss_pred EcCCCCeEEEEc-CCCcE-----EEEecCCCccCCC-----CCCceeEEEe----CCCeE-EEEeCCCCEEEEEecCCce
Q psy13998 114 ADSSNHRVQVFQ-SDGTF-----VGKFGSMGNKAGQ-----LEHPHYIAVS----NTNRV-IVSDSNNHRVQIFDVNGRV 177 (319)
Q Consensus 114 ~~~~~~~i~~~~-~~~~~-----~~~~~~~~~~~~~-----~~~~~~l~~~----~~g~~-~~~~~~~~~i~~~~~~~~~ 177 (319)
+++.++.|++|+ ..++. ...+ ..+ ...+.+++++ +++++ +++++.++.|.+||+....
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKL------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEE------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEcCCCCEEEEEccCCcccccccceee------cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 999999999999 44443 4555 233 3678999999 99998 9999999999999987400
Q ss_pred eeecCceee-----eecc-cCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcc---c---
Q psy13998 178 FQSDGTFVG-----KFGS-MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEG---Q--- 244 (319)
Q Consensus 178 ~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~---~--- 244 (319)
....++.+. .+.. ......+...+.+++++|++ ++++++.++.|++||.. ++.+..+ .. +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~h~~~ 232 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF------ESQHSMINN 232 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE------ECCC---CC
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE------ecccccccc
Confidence 000011111 1100 00002244567899999999 99999999999999964 6666666 33 4
Q ss_pred ccCcceEEEcCCCcEEEEeCCC---CEEEEEc-CCCceEEeecccCC-------CCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998 245 LKFPRGVAVDDQGYISVGDSGN---NRIQIFT-PDGQFLRAFGCWGS-------GDGEFKGLEGVAVMSNGNILVCDREN 313 (319)
Q Consensus 245 ~~~~~~i~~~~~g~~~v~~~~~---~~i~~~~-~~g~~~~~~~~~~~-------~~~~~~~~~~l~~~~~g~~~v~~~~~ 313 (319)
...+.+++++|+++++++++.+ +.|++|| .+++.+..+..... ...+...+.+++|+|+++++++++.|
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence 5678999999999999999999 9999999 46777777721000 00067789999999999999999999
Q ss_pred CeEEeC
Q psy13998 314 HRIQVF 319 (319)
Q Consensus 314 ~~i~v~ 319 (319)
+.|++|
T Consensus 313 g~i~iw 318 (397)
T 1sq9_A 313 GKLRFW 318 (397)
T ss_dssp SEEEEE
T ss_pred CeEEEE
Confidence 999998
No 76
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-24 Score=180.54 Aligned_cols=248 Identities=19% Similarity=0.215 Sum_probs=181.3
Q ss_pred CCcCCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccc---ce------eeEEecCceeeEEcCCCcEEEEcCCCCeE
Q psy13998 52 PGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKT---NC------VFLAFTWPRGIAVGPDNSIVVADSSNHRV 121 (319)
Q Consensus 52 ~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~---~~------~~~~~~~~~~l~~~~~g~~~~~~~~~~~i 121 (319)
.+|...+.+++|+| +++++++++.|+.|++ |+..+ .. ...+-..+.+++++++++++++++.++.|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~v----wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 135 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKI----WNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQI 135 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEE----EEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEE----eECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 56778999999999 9999999999999999 77654 21 11234578999999999999999999999
Q ss_pred EEEcC----CCcEEEEecCCC------ccCCCCCCceeEE--EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeec
Q psy13998 122 QVFQS----DGTFVGKFGSMG------NKAGQLEHPHYIA--VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFG 189 (319)
Q Consensus 122 ~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~l~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (319)
++|+. .++......... ...++...+.++. +++++.++++++.++.|++||++.. +.+..+.
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~ 209 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL------ERLQIIE 209 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC------CEEEEEE
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------eeeEEEc
Confidence 99985 444433221000 0000234455565 5578999999999999999999753 4444442
Q ss_pred ccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEc----CCCcEEEEeC
Q psy13998 190 SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVD----DQGYISVGDS 264 (319)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~g~~~v~~~ 264 (319)
. ..+...+.+++++|+++++++++.++.|++||. .++.+..+. ..+...+.+++++ +++.++++++
T Consensus 210 ~----~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 210 N----SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS-----FGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp C----CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-----CTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred c----CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-----cCCCCceEEEEeccccCCCccEEEEEc
Confidence 1 114467889999999999999999999999996 455556552 1333457788655 4678999999
Q ss_pred CCCEEEEEcC-CCceEEeecccCC------------------CC--CCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 265 GNNRIQIFTP-DGQFLRAFGCWGS------------------GD--GEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 265 ~~~~i~~~~~-~g~~~~~~~~~~~------------------~~--~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.++.|++||. +++.+..+..... .. .+...+++++++ +++++++++.|+.|++|
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w 355 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMF 355 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence 9999999995 5766665532110 01 155668999999 77999999999999998
No 77
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-25 Score=189.19 Aligned_cols=272 Identities=9% Similarity=-0.039 Sum_probs=187.6
Q ss_pred cccccccCCCccc---------hhccc-------------------cceeeeecccCCCC------------CcCCCCcc
Q psy13998 21 VSGIGQVGTTPRS---------QYLQK-------------------RRLQFKIGSRGSEP------------GCFTWPRG 60 (319)
Q Consensus 21 ~~~i~~~~~~~~~---------~~l~~-------------------~~~~~~~~~~~~~~------------~~~~~~~~ 60 (319)
...|.+++|+|++ ++++. ++.+.++.+|+... ++...+.+
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~ 212 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD 212 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence 4567888888876 55554 33445566664322 23466889
Q ss_pred eEEcCC------CcEEEEeCCCCeEEEeccccccccceee-----------EEe----cCceeeEEcCCCcEEEEcCCCC
Q psy13998 61 IAVGPD------NSIVVADSSNHRVQVCFPHFDLKTNCVF-----------LAF----TWPRGIAVGPDNSIVVADSSNH 119 (319)
Q Consensus 61 v~~~~~------g~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~----~~~~~l~~~~~g~~~~~~~~~~ 119 (319)
|+|+|+ +.++++++.|++|++ |++.+.... ..+ ..+.+++|++++ .+++++.|+
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~Dgtvrl----Wd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg 287 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINF----LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG 287 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEE----EECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEE----EEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence 999986 579999999999999 777543211 112 356889998764 788899999
Q ss_pred eEEEEcCC-Cc-EEEEecCCCccCCCCCCceeE--EEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc
Q psy13998 120 RVQVFQSD-GT-FVGKFGSMGNKAGQLEHPHYI--AVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK 194 (319)
Q Consensus 120 ~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l--~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (319)
+|++||.. +. ....+ .+|...+.++ ++.+++ .++++++.|++|++||++.. +....+...
T Consensus 288 tV~lWD~~~~~~~~~~~------~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~------~~~~~~~~~--- 352 (524)
T 2j04_B 288 FVAEFDLTDPEVPSFYD------QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI------ATTKTTVSR--- 352 (524)
T ss_dssp EEEEEETTBCSSCSEEE------ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH------HHHCEEEEE---
T ss_pred EEEEEECCCCCCceEEe------ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC------Ccccccccc---
Confidence 99999954 42 22223 4566778888 456777 89999999999999998742 222111100
Q ss_pred CCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998 195 AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT 273 (319)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~ 273 (319)
.....+.+++++|++..+++++.++.|++||. .+..+..+ .+|...+.+++|+|+|.++++++.|++|++|+
T Consensus 353 -~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 353 -FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL------VSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp -CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE------EECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred -cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee------ecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 00113567999999999999999999999995 45554555 45677899999999999999999999999998
Q ss_pred CCCce---------------EEeeccc------------------------CCCCCCCCCcceEEEccCCc---EEEEeC
Q psy13998 274 PDGQF---------------LRAFGCW------------------------GSGDGEFKGLEGVAVMSNGN---ILVCDR 311 (319)
Q Consensus 274 ~~g~~---------------~~~~~~~------------------------~~~~~~~~~~~~l~~~~~g~---~~v~~~ 311 (319)
...+. +..+... ....++...+++++|+|++. ++++++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 426 AARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp SCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred chHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc
Confidence 43211 1111000 01123556789999999964 999999
Q ss_pred CCCeEEeC
Q psy13998 312 ENHRIQVF 319 (319)
Q Consensus 312 ~~~~i~v~ 319 (319)
.++.|+||
T Consensus 506 ~~g~vrlw 513 (524)
T 2j04_B 506 SAGLLTLE 513 (524)
T ss_dssp TTSEEEEE
T ss_pred cCceEEEE
Confidence 99999998
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.94 E-value=1.1e-24 Score=181.04 Aligned_cols=235 Identities=14% Similarity=0.106 Sum_probs=165.4
Q ss_pred CcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE------EecCceeeEEcC-CCcEEEEcCCCCeEEEE
Q psy13998 53 GCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL------AFTWPRGIAVGP-DNSIVVADSSNHRVQVF 124 (319)
Q Consensus 53 ~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~ 124 (319)
++-..|.+|+|+| +++++++++.||.|++ |+..+..... |-..+.+|+|+| +++++++++.|+.|++|
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~l----Wd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIML----WNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEE----ECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEE----EECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 3446789999999 5679999999999999 8876543322 334678999997 57899999999999999
Q ss_pred cCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998 125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI 204 (319)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (319)
|..+.....+... ......+.+++++++++++++++.++.|.+||++++ .+..+ ..+...+.++
T Consensus 193 d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-------~~~~~------~~h~~~v~~v 256 (435)
T 4e54_B 193 DFKGNILRVFASS---DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-------ELWNL------RMHKKKVTHV 256 (435)
T ss_dssp ETTSCEEEEEECC---SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-------BCCCS------BCCSSCEEEE
T ss_pred eccCCceeEEecc---CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-------eeEEE------ecccceEEee
Confidence 9777665554322 222345678999999999999999999999998763 22222 3455678899
Q ss_pred EEcCCC-cEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEe
Q psy13998 205 AVSNTN-RVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRA 281 (319)
Q Consensus 205 ~~~~~g-~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~ 281 (319)
+++|++ .++++++.++.|++||... .....+. ...+|...+.+++|+|+|.++++++.|+.|++|+. +++....
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~ 333 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL---YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 333 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS---BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred eecCCCceEEEEecCcceeeEEecccccccceEE---EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence 999987 4788888999999999642 2211111 11345567889999999999999999999999994 5555544
Q ss_pred ecccCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998 282 FGCWGSGDGEFKGLEGVAVMSNGNILVCD 310 (319)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~ 310 (319)
+............+....+++++.+++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp ECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred EecccccccccceeEEEEEcCCCCEEEEE
Confidence 42111111111223445566666544443
No 79
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.94 E-value=1.2e-23 Score=165.01 Aligned_cols=204 Identities=41% Similarity=0.739 Sum_probs=165.4
Q ss_pred EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEE-eCCCeEEEEeCC-CCEEEEEec
Q psy13998 96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSN-NHRVQIFDV 173 (319)
Q Consensus 96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~~~~-~~~i~~~~~ 173 (319)
++..|.++++++++++|+++..++.|.+|+.+++.+..+...+....+...|.++++ ++++++|+++.. ++.|.+|+.
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~ 107 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 107 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC
Confidence 456899999999999999988899999999888888777554433455678999999 478999999864 789999997
Q ss_pred CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEE
Q psy13998 174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAV 253 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (319)
++. .+..+. ......|.+++++++|++|+++..++.|++|+.+++.+..+... .....|.+|++
T Consensus 108 ~g~-------~~~~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~----~~~~~p~~i~~ 171 (286)
T 1q7f_A 108 YGQ-------FVRKFG-----ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS----KHLEFPNGVVV 171 (286)
T ss_dssp TSC-------EEEEEC-----TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT----TTCSSEEEEEE
T ss_pred CCc-------EEEEec-----CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC----CccCCcEEEEE
Confidence 653 333332 12345789999999999999999899999999988877776321 34557899999
Q ss_pred cCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC-eEEeC
Q psy13998 254 DDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH-RIQVF 319 (319)
Q Consensus 254 ~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~-~i~v~ 319 (319)
+++|++|+++..++.|++|+.+++.+..+.. .++...|.+|+++++|++|+++..++ .|++|
T Consensus 172 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~----~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 172 NDKQEIFISDNRAHCVKVFNYEGQYLRQIGG----EGITNYPIGVGINSNGEILIADNHNNFNLTIF 234 (286)
T ss_dssp CSSSEEEEEEGGGTEEEEEETTCCEEEEESC----TTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEECCCCEEEEEcCCCCEEEEEcc----CCccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence 9999999999999999999999988877743 23356899999999999999998886 88876
No 80
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=4.1e-24 Score=177.37 Aligned_cols=239 Identities=13% Similarity=0.175 Sum_probs=181.8
Q ss_pred CcCCCCcceEEcCC-CcEEEEeCCCCeEEEecccccccc----------ceeeE----EecCceeeEEcCCCc-EEEEcC
Q psy13998 53 GCFTWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKT----------NCVFL----AFTWPRGIAVGPDNS-IVVADS 116 (319)
Q Consensus 53 ~~~~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~----------~~~~~----~~~~~~~l~~~~~g~-~~~~~~ 116 (319)
+|...|.+++++|+ ++++++++.++.|++ |+..+ ..... +-..+.++++++++. ++++++
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~v----wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLV----FDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEE----EEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEE----EECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 34578999999997 679999999999999 77754 22222 233678999999987 999999
Q ss_pred CCCeEEEEcCCC-----cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc
Q psy13998 117 SNHRVQVFQSDG-----TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS 190 (319)
Q Consensus 117 ~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 190 (319)
.++.|.+|+... ..+... .....|...+.+++++| ++.++++++.++.|++||++... ..+.+..+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~---~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~---~~~~~~~~-- 273 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAK---NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN---TSKPSHTV-- 273 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECS---EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC---SSSCSEEE--
T ss_pred CCCeEEEEeCCCCCCCCceeccc---eeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC---CCcceeEe--
Confidence 999999999543 111100 01135667789999999 67899999999999999997421 00122222
Q ss_pred cCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCC
Q psy13998 191 MGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGN 266 (319)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~ 266 (319)
..+...+.+++++|++. ++++++.++.|++||.. +..+..+ ..+...+.+++++|++ .++++++.+
T Consensus 274 ----~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~------~~h~~~v~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 274 ----DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF------ESHKDEIFQVQWSPHNETILASSGTD 343 (430)
T ss_dssp ----ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE------ECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred ----ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe------ecCCCCEEEEEECCCCCCEEEEEeCC
Confidence 23456688999999885 78899999999999964 3445555 4456678999999998 589999999
Q ss_pred CEEEEEcCCC---------------ceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 267 NRIQIFTPDG---------------QFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 267 ~~i~~~~~~g---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
+.|.+|+... +.+..+ .+|...+.+++|+|++. ++++++.|+.|++|
T Consensus 344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIH------GGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp SCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC------CCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred CcEEEEeCCCCccccCccccccCCcceEEEc------CCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence 9999999532 455555 56777899999999999 99999999999998
No 81
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.94 E-value=5.8e-24 Score=170.97 Aligned_cols=236 Identities=17% Similarity=0.294 Sum_probs=178.3
Q ss_pred CCCCCcCCCCcceEEcCC-CcEEEEeCCCCeEEEecccccccccee-----eE----EecCceeeEEcCCCcEEEEcCCC
Q psy13998 49 GSEPGCFTWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCV-----FL----AFTWPRGIAVGPDNSIVVADSSN 118 (319)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~----~~~~~~~l~~~~~g~~~~~~~~~ 118 (319)
+...||...|.+|+|+|+ ++++++++.|++|++ |++.+... .. +...+.+++|+|+++++++++.+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~v----Wd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM----WKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEE----EEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEE----EECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 345689999999999997 689999999999999 77654321 11 23467899999999999999999
Q ss_pred CeEEEEcCCC-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998 119 HRVQVFQSDG-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197 (319)
Q Consensus 119 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (319)
+.|++|+... ...... ..+...+....+.+++.++++++.++.+.+|+..+... ..... ..+
T Consensus 108 ~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~-----~~~~~------~~~ 170 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRF------VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-----YTVQD------ESH 170 (340)
T ss_dssp SEEEEEETTTTEEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-----EEECS------SSC
T ss_pred ccceEEeecccceeeee------cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-----EEEEe------ccc
Confidence 9999999544 333333 22334567778888999999999999999999875311 11111 334
Q ss_pred CCCceeEEEcCCC--cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 198 LEHPHYIAVSNTN--RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 198 ~~~~~~~~~~~~g--~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
...+..+++++++ .++++++.++.|++||. +++.+..+ .++...+.+++++|+++++++++.|+.|++||.
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~------~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH------IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE------CCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 4556778887654 67788888999999996 45566666 556667899999999999999999999999995
Q ss_pred -CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 275 -DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 275 -~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.++.+..+ .+...+..++++|++.+++ ++.|+.|++|
T Consensus 245 ~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~-~~~d~~i~iw 282 (340)
T 4aow_A 245 NEGKHLYTL-------DGGDIINALCFSPNRYWLC-AATGPSIKIW 282 (340)
T ss_dssp TTTEEEEEE-------ECSSCEEEEEECSSSSEEE-EEETTEEEEE
T ss_pred ccCceeeee-------cCCceEEeeecCCCCceee-ccCCCEEEEE
Confidence 55666665 2335789999999877555 4568899987
No 82
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=6.2e-24 Score=177.23 Aligned_cols=249 Identities=8% Similarity=0.084 Sum_probs=175.8
Q ss_pred cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce-----------eeE----Ee------------cCceeeEEc
Q psy13998 54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC-----------VFL----AF------------TWPRGIAVG 106 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~----~~------------~~~~~l~~~ 106 (319)
+.+.+.+++|+|+|+++++++.|+.|++ |+..+.. ... +. ..+.+++|+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~i----w~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVI----FQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEE----EEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEE----EEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence 4578999999999999999999999999 8776544 122 22 447889999
Q ss_pred CCC--cEEEEcCCCCeEEEEcCCC-cEEEE-ecCC---------------------------------CccCCCCCCcee
Q psy13998 107 PDN--SIVVADSSNHRVQVFQSDG-TFVGK-FGSM---------------------------------GNKAGQLEHPHY 149 (319)
Q Consensus 107 ~~g--~~~~~~~~~~~i~~~~~~~-~~~~~-~~~~---------------------------------~~~~~~~~~~~~ 149 (319)
|++ ..+++++.++.|++|+... ..... +... ....+|...+.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 998 7888889999999999432 22110 0000 001356678899
Q ss_pred EEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecc-cCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeC
Q psy13998 150 IAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS-MGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDV 227 (319)
Q Consensus 150 l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~ 227 (319)
++++|++++++++ .++.|++||++... +....+.. ......+...+.+++++|++ +++++++.++.|++||.
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITD-----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEE-----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCC-----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 9999999999998 79999999997311 11111100 01123455678999999998 89999999999999996
Q ss_pred C-CCE----EEEeCCCCCC------cccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC--CceEEeecccCCCCCCCC-
Q psy13998 228 N-GRV----ITSFGSEGSE------EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD--GQFLRAFGCWGSGDGEFK- 293 (319)
Q Consensus 228 ~-~~~----~~~~~~~~~~------~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~~- 293 (319)
. +.. ...+...... ..+...+.+++++|+|+++++++. +.|++||.. ++.+..+. .+..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~------~~~~~ 329 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ------VHEYL 329 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE------SCGGG
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee------ccccc
Confidence 4 443 3455211000 001126889999999999999888 999999953 66666552 2221
Q ss_pred --------------CcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 294 --------------GLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 294 --------------~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.+..++|+|+|+++++++.|+.|++|
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 369 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEE
Confidence 12349999999999999999999998
No 83
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=2.6e-24 Score=200.64 Aligned_cols=293 Identities=12% Similarity=0.169 Sum_probs=220.7
Q ss_pred hhhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcC--CCcEEEE
Q psy13998 5 SEAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGP--DNSIVVA 72 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~--~g~~~~~ 72 (319)
.+.++..++.++..+. ...|.+++|+|++.++++++.+..+..|+... +|...+.+++|++ ++.++++
T Consensus 639 i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred EEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence 3466777777666665 67899999999999999998888888887654 4557789999999 4558899
Q ss_pred eCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCC---------
Q psy13998 73 DSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMG--------- 138 (319)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~--------- 138 (319)
++.|+.|++ |+..+......+ ..+.+++++|+++++++++.++.|++|| .+++....+....
T Consensus 719 g~~d~~v~v----wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 794 (1249)
T 3sfz_A 719 GSNDFFLKL----WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794 (1249)
T ss_dssp EETTSCEEE----EETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred EeCCCeEEE----EECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence 999999999 888777655533 4678999999999999999999999999 4554443332110
Q ss_pred ----------------------------------------ccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998 139 ----------------------------------------NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF 178 (319)
Q Consensus 139 ----------------------------------------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 178 (319)
...++...+.+++++|+++++++++.++.|.+|+....
T Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-- 872 (1249)
T 3sfz_A 795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-- 872 (1249)
T ss_dssp -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT--
T ss_pred ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--
Confidence 00134456678888888888888888888888888743
Q ss_pred eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC-------E--------------EEE---
Q psy13998 179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR-------V--------------ITS--- 234 (319)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~-------~--------------~~~--- 234 (319)
..+..+ ..+...+.+++++|++..+++++.++.|++|+.... . ...
T Consensus 873 ----~~~~~~------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1249)
T 3sfz_A 873 ----LKVADC------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN 942 (1249)
T ss_dssp ----EEEEEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES
T ss_pred ----ceeeec------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecC
Confidence 333333 345667899999999999999999999999984310 0 000
Q ss_pred ------e-CCCCC-CcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998 235 ------F-GSEGS-EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 235 ------~-~~~~~-~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 305 (319)
. ..... .......+.+++++|+++++++++.++.|.+|+ .+++.+..+ .+|...+.+++|+|+|+
T Consensus 943 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~------~~h~~~v~~l~~s~dg~ 1016 (1249)
T 3sfz_A 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG------VGHKKAVRHIQFTADGK 1016 (1249)
T ss_dssp SSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC------CCCSSCCCCEEECSSSS
T ss_pred CcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec------ccCCCceEEEEECCCCC
Confidence 0 00000 001123467899999999999999999999999 467777666 57788899999999999
Q ss_pred EEEEeCCCCeEEeC
Q psy13998 306 ILVCDRENHRIQVF 319 (319)
Q Consensus 306 ~~v~~~~~~~i~v~ 319 (319)
++++++.|+.|++|
T Consensus 1017 ~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVW 1030 (1249)
T ss_dssp CEEEECSSSBEEEE
T ss_pred EEEEEcCCCEEEEE
Confidence 99999999999998
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.1e-25 Score=186.89 Aligned_cols=227 Identities=9% Similarity=-0.004 Sum_probs=156.3
Q ss_pred CCCcEEEEeCCCCeEEEecccccccccee-------eE-EecCceeeEEcCC------CcEEEEcCCCCeEEEEcCC-Cc
Q psy13998 65 PDNSIVVADSSNHRVQVCFPHFDLKTNCV-------FL-AFTWPRGIAVGPD------NSIVVADSSNHRVQVFQSD-GT 129 (319)
Q Consensus 65 ~~g~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~-~~~~~~~l~~~~~------g~~~~~~~~~~~i~~~~~~-~~ 129 (319)
|+++++++++.|++|++ |+..+... +. +...+.+++|+|+ +.++++++.|+.|++|+.. ++
T Consensus 171 ~~~~~laS~s~D~tI~i----Wd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQI----FKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp -----------CEEEEE----EEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred hhhhhhccCCCCceEEE----EEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 44455666778999999 77765432 11 2346789999986 5689999999999999943 32
Q ss_pred EE----EEecCC-CccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998 130 FV----GKFGSM-GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI 204 (319)
Q Consensus 130 ~~----~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (319)
.. .....+ ....++...+.+++|++++ .+++++.|+.|++||++... .....+ ..|...+.++
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~-----~~~~~~------~~H~~~V~sv 314 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE-----VPSFYD------QVHDSYILSV 314 (524)
T ss_dssp SSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS-----SCSEEE------ECSSSCEEEE
T ss_pred cccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC-----CceEEe------ecccccEEEE
Confidence 11 000000 0113455678999999865 68899999999999997320 111112 3455667788
Q ss_pred --EEcCCC-cEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccc--cCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCc
Q psy13998 205 --AVSNTN-RVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQL--KFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQ 277 (319)
Q Consensus 205 --~~~~~g-~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~ 277 (319)
++++++ +++++++.|+.|++||.. ++....+ .++. ..+.+++|+|++..+++++.++.|++|+ ..+.
T Consensus 315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~------~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT------VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp EEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE------EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT
T ss_pred EEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc------ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc
Confidence 467777 899999999999999964 3332222 1222 1367899999999999999999999999 4566
Q ss_pred eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 278 FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.+..+ .+|...+++++|+|+|+++++++.|+.|++|
T Consensus 389 ~~~~l------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 389 AVHPL------VSRETTITAIGVSRLHPMVLAGSADGSLIIT 424 (524)
T ss_dssp CCEEE------EECSSCEEEEECCSSCCBCEEEETTTEEECC
T ss_pred cceee------ecCCCceEEEEeCCCCCeEEEEECCCEEEEE
Confidence 65666 4678899999999999999999999999998
No 85
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.9e-24 Score=189.95 Aligned_cols=243 Identities=12% Similarity=0.092 Sum_probs=182.0
Q ss_pred CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc--ceeeE----EecCceeeEEcCC--CcEEEEcCCCCeEE
Q psy13998 51 EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT--NCVFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQ 122 (319)
Q Consensus 51 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~ 122 (319)
..+|...+.+++|+|+|+++++++.|+.|++ |+..+ ..... +...+.+++++++ ++++++++.++.|+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~v----wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKI----FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEE----EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEE----EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 3578889999999999999999999999999 87752 23333 2336789999987 88999999999999
Q ss_pred EEcC-CCc--EEEEecCCCccCCCCCCceeEEEeCC--CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998 123 VFQS-DGT--FVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197 (319)
Q Consensus 123 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (319)
+||. +++ ....+ ..+...+.+++++|+ ++++++++.++.|++||+..... ...... ..+
T Consensus 81 vwd~~~~~~~~~~~~------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~------~~~ 144 (753)
T 3jro_A 81 IWKEENGRWSQIAVH------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSPIII------DAH 144 (753)
T ss_dssp EEEEETTEEEEEEEE------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----CCCEEE------ECC
T ss_pred EEECCCCcccccccc------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----cceeEe------ecC
Confidence 9994 444 33444 456678899999998 99999999999999999875310 111111 234
Q ss_pred CCCceeEEEcC-------------CCcEEEEeCCCCeEEEEeCC-C----CEEEEeCCCCCCcccccCcceEEEcCC---
Q psy13998 198 LEHPHYIAVSN-------------TNRVIVSDSNNHRVQIFDVN-G----RVITSFGSEGSEEGQLKFPRGVAVDDQ--- 256 (319)
Q Consensus 198 ~~~~~~~~~~~-------------~g~~~v~~~~~~~i~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~i~~~~~--- 256 (319)
...+.+++++| ++.++++++.++.|++||.. + .....+ .++...+.+++++|+
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~------~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL------EGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE------CCCSSCEEEEEECCCCSS
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee------cCCCCcEEEEEeccCCCC
Confidence 55678899998 47889999999999999953 3 233444 455667899999999
Q ss_pred CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 257 GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 257 g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+.++++++.++.|++|+.................+...+++++|+|+|+++++++.|+.|++|
T Consensus 219 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vw 281 (753)
T 3jro_A 219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281 (753)
T ss_dssp SEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECC
T ss_pred CCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 899999999999999995432100000001113466778999999999999999999999998
No 86
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.93 E-value=4.4e-23 Score=169.11 Aligned_cols=251 Identities=18% Similarity=0.243 Sum_probs=176.2
Q ss_pred cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE---ecCceeeEEcCCCc-EEEEcCCCC-eEEEEcCCC
Q psy13998 54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA---FTWPRGIAVGPDNS-IVVADSSNH-RVQVFQSDG 128 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~g~-~~~~~~~~~-~i~~~~~~~ 128 (319)
.+..|.+|+++++|++|+++..++.|++ |+..+...... ...+. ++++++++ +|+++...+ .|++++..+
T Consensus 129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~----id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 129 KFKYMWGIAAVGNNTVLAYQRDDPRVRL----ISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCCCEEEEEECSTTEEEEEETTTTEEEE----EETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred ccCCceEEEEeCCCCEEEEecCCCcEEE----EECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence 5789999999999999999999999999 88765443321 23456 99999987 555555343 899999543
Q ss_pred c-EEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCce-eEE
Q psy13998 129 T-FVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH-YIA 205 (319)
Q Consensus 129 ~-~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 205 (319)
. ....+.... ......|.+++++| ++.+|++. .++.|.+|+.++... .........+ .....|. +++
T Consensus 204 ~~~~~~~g~~~--~~~~~~p~~iav~p~~g~lyv~d-~~~~I~~~d~~~~~~----~~~~~~~~~g---~~~~~P~~~ia 273 (409)
T 3hrp_A 204 GWAPTRIGQLG--STFSGKIGAVALDETEEWLYFVD-SNKNFGRFNVKTQEV----TLIKQLELSG---SLGTNPGPYLI 273 (409)
T ss_dssp TTCEEEEEECC--TTSCSCCCBCEECTTSSEEEEEC-TTCEEEEEETTTCCE----EEEEECCCCS---CCCCSSCCEEE
T ss_pred CceeEEeeecc--chhcCCcEEEEEeCCCCeEEEEE-CCCcEEEEECCCCCE----EEEecccccC---CCCCCccccEE
Confidence 2 222221100 11346789999999 78888855 478999999875421 1111111111 1112355 999
Q ss_pred EcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCC---CCC-----cccccCcceEEEcCCCcEEEEeC-CCCEEEEEc-C
Q psy13998 206 VSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSE---GSE-----EGQLKFPRGVAVDDQGYISVGDS-GNNRIQIFT-P 274 (319)
Q Consensus 206 ~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~i~~~~~g~~~v~~~-~~~~i~~~~-~ 274 (319)
++| ++++|+++..+++|++|+.++......+.. +.. ...+..|.+|+++++|++|+++. .+++|++|+ .
T Consensus 274 ~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 274 YYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred EeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 999 589999999999999999988755444322 110 12367799999999999999999 999999999 7
Q ss_pred CCceEEeecccC--------CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 275 DGQFLRAFGCWG--------SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 275 ~g~~~~~~~~~~--------~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+|+.....+... .....+..|.+|+++++|.+|+++..+++|+.+
T Consensus 354 ~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 354 DGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp TTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 776544443211 011236789999999999999999999999863
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=174.60 Aligned_cols=243 Identities=12% Similarity=0.123 Sum_probs=175.0
Q ss_pred CcCCCCcceEEcCCCc-EEEEeCC---CCeEEEeccccccccceeeE-----EecCceeeEEcCC---CcEEEEcCCCCe
Q psy13998 53 GCFTWPRGIAVGPDNS-IVVADSS---NHRVQVCFPHFDLKTNCVFL-----AFTWPRGIAVGPD---NSIVVADSSNHR 120 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~-~~~~~~~---~~~v~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~---g~~~~~~~~~~~ 120 (319)
+|...+.+++|+|+++ ++++++. ++.|++ |+..+..... +...+.+++|+|+ ++++++++.++.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~i----w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQL----YEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEE----EEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEE----EeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 5678899999999986 5556665 899999 8887654432 3346789999998 688899999999
Q ss_pred EEEEc-CCCc-EEEEecCCCccCCCCCCceeEE------EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC
Q psy13998 121 VQVFQ-SDGT-FVGKFGSMGNKAGQLEHPHYIA------VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG 192 (319)
Q Consensus 121 i~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~------~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 192 (319)
|++|+ ..++ .+..+ .+|...+.++. ++++++++++++.++.|++||+.... ..+..+....
T Consensus 92 i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~ 160 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSV------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD-----DPVANMEPVQ 160 (357)
T ss_dssp EEEECTTSCSSCSEEE------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS-----SCSEEECCCT
T ss_pred EEEEeCCCCCccEEEE------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC-----CcceeccccC
Confidence 99999 4444 45555 45666778885 46789999999999999999987531 1223221110
Q ss_pred CcCCCCCCceeEE----EcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC---CCcEEEEeCC
Q psy13998 193 NKAGQLEHPHYIA----VSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD---QGYISVGDSG 265 (319)
Q Consensus 193 ~~~~~~~~~~~~~----~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~g~~~v~~~~ 265 (319)
........+++ ++++++++++++.++.|++||......... ..+...+.+++++| ++.++++++.
T Consensus 161 --~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 161 --GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE------TNIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp --TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE------EECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred --CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee------cCCCCceEEEEcCCCCCCCCEEEEECC
Confidence 01122455666 678999999999999999999765444333 23445688999999 8899999999
Q ss_pred CCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 266 NNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 266 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
++.|++|+.. ++.+..+... ....+...+.+++++|++. ++++++.|+.|++|
T Consensus 233 dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 233 EGKFHVFDMRTQHPTKGFASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp TTEEEEEEEEEEETTTEEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred CCeEEEEeCcCCCcccceeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence 9999999943 3222222000 0025677899999999998 89999999999998
No 88
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.93 E-value=1.2e-23 Score=182.44 Aligned_cols=269 Identities=8% Similarity=0.053 Sum_probs=203.0
Q ss_pred cccccccCCCccchhccccceeeeecccCCCC------------CcCCC-CcceEEcC--CCcEEEEeCCCCeEEEeccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP------------GCFTW-PRGIAVGP--DNSIVVADSSNHRVQVCFPH 85 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~-~~~v~~~~--~g~~~~~~~~~~~v~~~~~~ 85 (319)
...+..++++|++.+++.+. ...+..|.... +|... +.+++|+| +++++++++.++.|++
T Consensus 18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v---- 92 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV---- 92 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE----
T ss_pred cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE----
Confidence 56789999999999888765 33444444332 35567 89999999 9999999999999999
Q ss_pred cccccc--------eeeEE----ecCceeeEEcCCCcEEEEcCCC----CeEEEEcCCCcEEEEecCCCccCCCCCCcee
Q psy13998 86 FDLKTN--------CVFLA----FTWPRGIAVGPDNSIVVADSSN----HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHY 149 (319)
Q Consensus 86 ~~~~~~--------~~~~~----~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (319)
|+..+. ..... ...+.+++++|+++.+++++.+ +.|.+|+ .++.+..+ .++...+.+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~------~~~~~~v~~ 165 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEV------SGHSQRINA 165 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEEC------CSCSSCEEE
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceee------ecCCccEEE
Confidence 887533 22222 2367899999999988887766 6899999 55666666 456678899
Q ss_pred EEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC---CceeEEEcCC-CcEEEEeCCCCeEEE
Q psy13998 150 IAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE---HPHYIAVSNT-NRVIVSDSNNHRVQI 224 (319)
Q Consensus 150 l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-g~~~v~~~~~~~i~~ 224 (319)
++++|++. ++++++.++.|++||.... +.+..+ ..+.. .+.+++++|+ ++++++++.++.|++
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~------~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPPF------KFSASD------RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTB------EEEEEE------CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCCc------ceeeee------cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 99999987 8899999999999998743 344444 23344 6789999999 999999999999999
Q ss_pred EeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998 225 FDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMS 302 (319)
Q Consensus 225 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (319)
||. +++.+..+.... ..+...+.+++++ ++.++++++.++.|++|+. +++.+..+.... ......+.++.+.
T Consensus 234 wd~~~~~~~~~~~~~~--~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~- 307 (615)
T 1pgu_A 234 FDGKSGEFLKYIEDDQ--EPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK--QQLGNQQVGVVAT- 307 (615)
T ss_dssp EETTTCCEEEECCBTT--BCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT--TCGGGCEEEEEEE-
T ss_pred EECCCCCEeEEecccc--cccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--CcccCceeEEEeC-
Confidence 995 566666652100 0455578899999 9999999999999999995 577777663211 1123456677775
Q ss_pred CCcEEEEeCCCCeEEeC
Q psy13998 303 NGNILVCDRENHRIQVF 319 (319)
Q Consensus 303 ~g~~~v~~~~~~~i~v~ 319 (319)
++.++++++.++.|++|
T Consensus 308 ~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFY 324 (615)
T ss_dssp ETTEEEEEETTSCEEEE
T ss_pred CCCeEEEEECCCCEEEE
Confidence 77889999999999887
No 89
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=2e-23 Score=173.48 Aligned_cols=260 Identities=16% Similarity=0.239 Sum_probs=188.9
Q ss_pred ccccccCCCccchhccccceeeeecccCCCC-------------CcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccc
Q psy13998 22 SGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-------------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL 88 (319)
Q Consensus 22 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~ 88 (319)
..+..++++|++.++..+..+..+..|+... +|...+.+++++++++++++++.++.|++ |+.
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~----~d~ 198 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV----FDL 198 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE----EET
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE----EEC
Confidence 3456788899777777766555555554432 34457788999999999999999999999 888
Q ss_pred ccceeeEEe----cCceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEe
Q psy13998 89 KTNCVFLAF----TWPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162 (319)
Q Consensus 89 ~~~~~~~~~----~~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~ 162 (319)
.+......+ ..+.+++++|+++ +++++..++.|.+|| .+++.+..+.. ...+.+++++|+++.++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-------IGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-------CSEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-------CCCceEEEEcCCCCEEEEE
Confidence 766555533 3678999999987 456777889999999 56666655532 2347899999999766665
Q ss_pred C--------CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC-CCEE
Q psy13998 163 S--------NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN-GRVI 232 (319)
Q Consensus 163 ~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~-~~~~ 232 (319)
. .++.|++||+.+. +.+.... +...+.+++++|+++ +++++..++.|++||.+ ++..
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~------~~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKE------KLIDTIG-------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTT------EEEEEEE-------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred ECCCCccccCCCeEEEEECCCC------cEEeecc-------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence 5 4789999998753 3322221 123567899999984 77888899999999975 4455
Q ss_pred EEeCCCCCCcccccCcceEEEcCCCcE-EEEeCC--------------CCEEEEEcC-CCceEEeecccCCCCCCCCCcc
Q psy13998 233 TSFGSEGSEEGQLKFPRGVAVDDQGYI-SVGDSG--------------NNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLE 296 (319)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~g~~-~v~~~~--------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 296 (319)
..+ .....+.+++++|+|++ ++++.. ++.|++||. +++.+..+. . ...+.
T Consensus 339 ~~~-------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~------~-~~~~~ 404 (433)
T 3bws_A 339 KSI-------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE------A-GNQPT 404 (433)
T ss_dssp EEE-------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE------C-SSSEE
T ss_pred EEe-------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec------C-CCCCc
Confidence 444 13345789999999974 444443 469999995 677777662 2 34689
Q ss_pred eEEEccCCcEEE-EeCCCCeEEeC
Q psy13998 297 GVAVMSNGNILV-CDRENHRIQVF 319 (319)
Q Consensus 297 ~l~~~~~g~~~v-~~~~~~~i~v~ 319 (319)
+++++|+|++++ ++..++.|++|
T Consensus 405 ~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEE
T ss_pred eEEEcCCCCEEEEEECCCCeEEEE
Confidence 999999998655 45569999998
No 90
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=6.4e-23 Score=168.18 Aligned_cols=226 Identities=20% Similarity=0.331 Sum_probs=170.0
Q ss_pred CCCcceEEcCCCcE-EEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCc
Q psy13998 56 TWPRGIAVGPDNSI-VVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGT 129 (319)
Q Consensus 56 ~~~~~v~~~~~g~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~ 129 (319)
..|.+++++|+|+. +++++.++.|++ |+..+.+....+. .+.+++++|+++ +++++..++.|++|| .+++
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v----~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~ 107 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSI----IDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEE----EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEE----EECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCe
Confidence 45889999999985 578888999999 8887776655433 678999999987 557777789999999 4556
Q ss_pred EEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998 130 FVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN 208 (319)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (319)
.+..+. ....+.+++++++++ +++++..++.|.+||+.+. +.+..+.. ...+.+++++|
T Consensus 108 ~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~~~-------~~~~~~~~~~~ 167 (391)
T 1l0q_A 108 VAGTVK-------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK------AVINTVSV-------GRSPKGIAVTP 167 (391)
T ss_dssp EEEEEE-------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEEC-------CSSEEEEEECT
T ss_pred EEEEEe-------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------cEEEEEec-------CCCcceEEECC
Confidence 655553 124678999999987 4588888999999998743 33333311 23468899999
Q ss_pred CCcE-EEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC---CCCEEEEEcC-CCceEEee
Q psy13998 209 TNRV-IVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS---GNNRIQIFTP-DGQFLRAF 282 (319)
Q Consensus 209 ~g~~-~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~---~~~~i~~~~~-~g~~~~~~ 282 (319)
+++. ++++..++.|++||... +....+ .+...+.+++++|+|+.+++++ .++.|++||. +++.+..+
T Consensus 168 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 168 DGTKVYVANFDSMSISVIDTVTNSVIDTV-------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEE-------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEE-------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 9864 57888899999999754 444444 1233578899999997655554 6899999995 56666666
Q ss_pred cccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 283 GCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
. . ...+.+++++|+|+ ++++++.++.|++|
T Consensus 241 ~------~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 241 P------V-GPDPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp E------C-CSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred e------c-CCCccEEEEccCCCEEEEEcCCCCEEEEE
Confidence 2 2 23588999999997 56888999999987
No 91
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.7e-24 Score=190.77 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=96.6
Q ss_pred hhhccchhhhhhhhhh-cccccccCCCccchhccccceeeeecccCCC-------------------CCcCCCCcceEEc
Q psy13998 5 SEAKNINSCFLLQTLL-VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-------------------PGCFTWPRGIAVG 64 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------------~~~~~~~~~v~~~ 64 (319)
.+.+++.++.++..+. ...|.+++|+|++.+++.+..+..+..|+.. .+|...+.+|+|+
T Consensus 81 v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp EEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 4567777776666554 4578999999999999998877776666432 3456789999999
Q ss_pred CC-CcEEEEeCCCCeEEEeccccccccceeeEEe----------------------cCceeeEEcCCCcEEEEcCCCCeE
Q psy13998 65 PD-NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----------------------TWPRGIAVGPDNSIVVADSSNHRV 121 (319)
Q Consensus 65 ~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~g~~~~~~~~~~~i 121 (319)
|+ +.++++++.++.| + |+..+......+ ..+.+++|+|+|+++++++.|+.|
T Consensus 161 p~~~~~l~~g~~dg~v-l----Wd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i 235 (902)
T 2oaj_A 161 PRDIGTVLISYEYVTL-T----YSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSL 235 (902)
T ss_dssp TTEEEEEEEECSSCEE-E----EETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCE
T ss_pred cCCCCEEEEEeCCCcE-E----EECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeE
Confidence 96 4688899999999 9 888776655433 347899999999999999999999
Q ss_pred EEEc-CCCcEEE
Q psy13998 122 QVFQ-SDGTFVG 132 (319)
Q Consensus 122 ~~~~-~~~~~~~ 132 (319)
++|| .+++.+.
T Consensus 236 ~lWd~~~g~~~~ 247 (902)
T 2oaj_A 236 VFWDANSGHMIM 247 (902)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCcEEE
Confidence 9999 4666554
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=2.6e-24 Score=173.22 Aligned_cols=242 Identities=10% Similarity=0.039 Sum_probs=179.5
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce----eeE---EecCceeeEEcCCCc-EEEEcCCCCeEEE
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC----VFL---AFTWPRGIAVGPDNS-IVVADSSNHRVQV 123 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~----~~~---~~~~~~~l~~~~~g~-~~~~~~~~~~i~~ 123 (319)
.+|...+.+++|+|+++++++++.++.|++ |+..+.. ... +...+.+++++++++ ++++++.++.|++
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~i----w~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTV----YKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEE----EEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEE----EEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 467788999999999999999999999999 8776554 211 234678999999999 8999999999999
Q ss_pred EcC-CCcEEEEecCCCccCC--CCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce---eeecCceeeeecccCCcCCC
Q psy13998 124 FQS-DGTFVGKFGSMGNKAG--QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV---FQSDGTFVGKFGSMGNKAGQ 197 (319)
Q Consensus 124 ~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 197 (319)
|+. .......+ .. +...+.++++++ ++++++++.++.|++||++... ....++.+.. ..+
T Consensus 84 wd~~~~~~~~~~------~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~ 149 (342)
T 1yfq_A 84 VDLIGSPSFQAL------TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-------TKV 149 (342)
T ss_dssp ECSSSSSSEEEC------BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-------SSS
T ss_pred EEeccCCceEec------cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-------Eee
Confidence 997 76655555 34 667889999999 9999999999999999976300 0000122211 124
Q ss_pred CCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC--C--EEEEeCCCCCCcccccCcceEEEcC-CCcEEEEeCCCCEEEEE
Q psy13998 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG--R--VITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDSGNNRIQIF 272 (319)
Q Consensus 198 ~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~ 272 (319)
...+.++++++++ +++++.++.|++||... . ..... ..+...+.+++++| +++++++++.++.|.+|
T Consensus 150 ~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~ 221 (342)
T 1yfq_A 150 KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221 (342)
T ss_dssp CCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred CCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee------cCCCCceeEEEECCCCCCEEEEEecCCcEEEE
Confidence 4567889999876 77777899999999754 2 12222 23344678999999 99999999999999999
Q ss_pred cCCC-------ceEEeecccCC---CCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 273 TPDG-------QFLRAFGCWGS---GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 273 ~~~g-------~~~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+.+. +....+..... ...+...+.+++|+|+++++++++.|+.|++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 8432 44444421100 01223489999999999999999999999998
No 93
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.93 E-value=8e-24 Score=169.27 Aligned_cols=207 Identities=24% Similarity=0.431 Sum_probs=159.3
Q ss_pred CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce-eeE-------------EecCceeeEEcC-CCcEEEEcC-
Q psy13998 53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC-VFL-------------AFTWPRGIAVGP-DNSIVVADS- 116 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~-~~~-------------~~~~~~~l~~~~-~g~~~~~~~- 116 (319)
+++..|.+|+++++|++|+++..++.|++ |+..... .+. ++..|.++++++ ++++|++++
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~----~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFK----LDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEE----ECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEE----EeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 45678999999999999999999999999 7664321 222 234799999999 899999997
Q ss_pred CCCeEEEEcCCCcEEEEecCCCcc----CCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998 117 SNHRVQVFQSDGTFVGKFGSMGNK----AGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM 191 (319)
Q Consensus 117 ~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 191 (319)
.+++|.+|+.+|+.+..+...+.. ..++..|.+++++++ +++|+++..+++|.+|+.++ |+++..+...
T Consensus 164 ~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~------G~~~~~~~~~ 237 (329)
T 3fvz_A 164 CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT------KEFVREIKHA 237 (329)
T ss_dssp SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT------CCEEEEECCT
T ss_pred CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC------CcEEEEEecc
Confidence 789999999999988877544322 245567999999998 89999999999999999871 2444444221
Q ss_pred CCcCCCCCCceeEEEcC------CCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC
Q psy13998 192 GNKAGQLEHPHYIAVSN------TNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS 264 (319)
Q Consensus 192 ~~~~~~~~~~~~~~~~~------~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~ 264 (319)
.....+.+++++| +|++++++..+..|++|+ .+++.+..+... ..++..|.+|+++++|++|+++.
T Consensus 238 ----~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~---~~~~~~p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 238 ----SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV---RKHFDMPHDIVASEDGTVYIGDA 310 (329)
T ss_dssp ----TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS---SSCCSSEEEEEECTTSEEEEEES
T ss_pred ----ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC---CCccCCeeEEEECCCCCEEEEEC
Confidence 1223456667766 555555556667999999 577877776421 34677899999999999999999
Q ss_pred CCCEEEEEcCCC
Q psy13998 265 GNNRIQIFTPDG 276 (319)
Q Consensus 265 ~~~~i~~~~~~g 276 (319)
.+++|++|+.++
T Consensus 311 ~~~~I~~~~~~~ 322 (329)
T 3fvz_A 311 HTNTVWKFTLTE 322 (329)
T ss_dssp SSCCEEEEEEEE
T ss_pred CCCEEEEEeCCc
Confidence 999999999765
No 94
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.93 E-value=7.2e-24 Score=172.15 Aligned_cols=250 Identities=12% Similarity=0.081 Sum_probs=174.0
Q ss_pred CCCCcCCCCcceEEcCC---CcEEEEeCCCCeEEEecccccccc-ceee-E----EecCceeeEEcCCCcEEEEcCCCCe
Q psy13998 50 SEPGCFTWPRGIAVGPD---NSIVVADSSNHRVQVCFPHFDLKT-NCVF-L----AFTWPRGIAVGPDNSIVVADSSNHR 120 (319)
Q Consensus 50 ~~~~~~~~~~~v~~~~~---g~~~~~~~~~~~v~~~~~~~~~~~-~~~~-~----~~~~~~~l~~~~~g~~~~~~~~~~~ 120 (319)
...+|...+.+++|+|+ |+++++++.|+.|++ |+..+ .... . +...+.+++++|+++++++++.++.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~i----w~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRC----WEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEE----EEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEE----EEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 44678889999999998 699999999999999 88875 3332 2 2346789999999999999999999
Q ss_pred EEEEcC-CCcEEEEecCCCccCCCCCCceeEEE--eCCCeEEEEeCCCCEEEEEecCCcee----eecCce---------
Q psy13998 121 VQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAV--SNTNRVIVSDSNNHRVQIFDVNGRVF----QSDGTF--------- 184 (319)
Q Consensus 121 i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~g~~~~~~~~~~~i~~~~~~~~~~----~~~~~~--------- 184 (319)
|++||. +++... . ..+...+.++++ +++++++++++.++.|++||+..... ......
T Consensus 110 v~iwd~~~~~~~~-~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-I------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM 182 (368)
T ss_dssp EEEEETTTTEEEE-E------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTE
T ss_pred EEEEEcCCCCcee-e------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCe
Confidence 999995 444443 3 235577899999 88999999999999999999864311 000000
Q ss_pred ---------eeeecccC-------CcCCCCCCceeEEEcCCCc----EEEEeCCCCeEEEEeCCCC----EEEEeCCCC-
Q psy13998 185 ---------VGKFGSMG-------NKAGQLEHPHYIAVSNTNR----VIVSDSNNHRVQIFDVNGR----VITSFGSEG- 239 (319)
Q Consensus 185 ---------~~~~~~~~-------~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~i~~~~~~~~----~~~~~~~~~- 239 (319)
+..+.... ...........+++.++.. .+++++.++.|++|+.+.. ....+....
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 00000000 0001112233444443332 3788888999999996542 223331100
Q ss_pred -----CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998 240 -----SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN 313 (319)
Q Consensus 240 -----~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~ 313 (319)
....+...+.+++++|+++++++++.++.|++||. +++.+..+ ..+...+.+++|+|+|+++++++.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS------EQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC------CCCSSCEEEEEECTTSSCEEEEECC
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe------cCCCCCceEEEECCCCCeEEEEecc
Confidence 00112225889999999999999999999999994 57777777 5677889999999999988888877
Q ss_pred CeE
Q psy13998 314 HRI 316 (319)
Q Consensus 314 ~~i 316 (319)
+..
T Consensus 337 ~~~ 339 (368)
T 3mmy_A 337 DWS 339 (368)
T ss_dssp CST
T ss_pred ccc
Confidence 643
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=8.2e-23 Score=168.09 Aligned_cols=224 Identities=14% Similarity=0.148 Sum_probs=174.3
Q ss_pred CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEE
Q psy13998 58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFV 131 (319)
Q Consensus 58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~ 131 (319)
...+++++ ..+++++.++.|++ |+..++.....+ ..+.+++++|+++++++++.++.|.+|+ .+++.+
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~l----w~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 169 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYV----WNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL 169 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEE----EETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEeecC--CCEEEEECCCeEEE----eeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE
Confidence 34456654 44667778999999 888766654432 3578999999999999999999999999 567777
Q ss_pred EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc
Q psy13998 132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211 (319)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 211 (319)
..+ ..+...+.+++++ ++++++++.++.|.+||++.. +..+..+ ..+...+.+++++|++.
T Consensus 170 ~~~------~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~------~~~~~~v~~~~~~~~~~ 230 (401)
T 4aez_A 170 RTM------AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA-----NHQIGTL------QGHSSEVCGLAWRSDGL 230 (401)
T ss_dssp EEE------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS-----SCEEEEE------ECCSSCEEEEEECTTSS
T ss_pred EEe------cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC-----cceeeEE------cCCCCCeeEEEEcCCCC
Confidence 777 4566778888884 578999999999999998731 1223333 34556788999999999
Q ss_pred EEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeC--CCCEEEEEc-CCCceEEeecccC
Q psy13998 212 VIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDS--GNNRIQIFT-PDGQFLRAFGCWG 286 (319)
Q Consensus 212 ~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~--~~~~i~~~~-~~g~~~~~~~~~~ 286 (319)
++++++.++.|++||. .+.....+ ..+...+.+++++|++ .++++++ .++.|++|| .+++.+..+.
T Consensus 231 ~l~s~~~d~~v~iwd~~~~~~~~~~------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--- 301 (401)
T 4aez_A 231 QLASGGNDNVVQIWDARSSIPKFTK------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--- 301 (401)
T ss_dssp EEEEEETTSCEEEEETTCSSEEEEE------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---
T ss_pred EEEEEeCCCeEEEccCCCCCccEEe------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---
Confidence 9999999999999996 45666666 4556678999999976 5777765 799999999 4677777762
Q ss_pred CCCCCCCCcceEEEccCCcEEEE--eCCCCeEEeC
Q psy13998 287 SGDGEFKGLEGVAVMSNGNILVC--DRENHRIQVF 319 (319)
Q Consensus 287 ~~~~~~~~~~~l~~~~~g~~~v~--~~~~~~i~v~ 319 (319)
+...+.+++|+|+++++++ +..++.|++|
T Consensus 302 ----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 302 ----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp ----CSSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred ----CCCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence 3457999999999998877 5689999987
No 96
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-23 Score=165.08 Aligned_cols=227 Identities=15% Similarity=0.238 Sum_probs=177.2
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSD 127 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~ 127 (319)
.+|...+.++++ ++++++++++.|+.|++ |+..+...... ...+.+++++|+++++++++.++.|.+|+..
T Consensus 15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~v----w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRL----WSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp CCCSSCEEEEEE-EETTEEEEEETTSEEEE----EEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred hCCCCCcEEEEe-cCCCEEEEEEcCCcEEE----EECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 477889999999 89999999999999999 88866554442 3467899999999999999999999999832
Q ss_pred -C---cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998 128 -G---TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY 203 (319)
Q Consensus 128 -~---~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (319)
. +....+ ..+...+.++++ +++++++++.++.|.+||.. +....+ ..+...+.+
T Consensus 90 ~~~~~~~~~~~------~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~--------~~~~~~------~~~~~~v~~ 147 (313)
T 3odt_A 90 ATSGEDPLYTL------IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG--------SLVYNL------QAHNASVWD 147 (313)
T ss_dssp CCTTSCC-CEE------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT--------EEEEEE------ECCSSCEEE
T ss_pred ecCCCCcccch------hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC--------cEEEec------ccCCCceeE
Confidence 2 333344 445567788888 46788999999999999932 333333 234456677
Q ss_pred EEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEe
Q psy13998 204 IAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRA 281 (319)
Q Consensus 204 ~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~ 281 (319)
+++.+ ++.++++++.++.|++|| .+.....+. ..+...+..++++|++. +++++.++.|++||. +++.+..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~ 220 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFS-----GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT 220 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE-TTEEEEEEC-----SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEccCCCCEEEEEECCCCEEEEe-cCceEEEEe-----ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh
Confidence 88877 888999999999999999 444445552 12455688999999988 788889999999994 5788887
Q ss_pred ecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 282 FGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+ ..+...+.+++++|++. +++++.|+.|++|
T Consensus 221 ~------~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iw 251 (313)
T 3odt_A 221 Y------EGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251 (313)
T ss_dssp E------ECCSSCEEEEEECTTSC-EEEEETTSEEEEE
T ss_pred h------hcCCceEEEEEEecCCC-EEEEecCCEEEEE
Confidence 7 56778899999999994 7788899999998
No 97
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=5.7e-24 Score=172.66 Aligned_cols=241 Identities=14% Similarity=0.193 Sum_probs=180.4
Q ss_pred CCcCCCCcceEEcCC----CcEEEEeCCCCeEEEeccccccccceeeEEe---------cCceeeEEcCC----CcEEEE
Q psy13998 52 PGCFTWPRGIAVGPD----NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---------TWPRGIAVGPD----NSIVVA 114 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~----g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~----g~~~~~ 114 (319)
.+|...+.+++|+|+ ...+++++.++.|++ |+..+.+....+ ..+.+++|+++ ++++++
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~v----w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTL----YECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEE----EEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEE----EEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 367789999999984 345666666779999 888765544322 24688999988 678999
Q ss_pred cCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC
Q psy13998 115 DSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG 192 (319)
Q Consensus 115 ~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 192 (319)
++.++.|++|| .+++.+..+ .++...+.+++++| +++++++++.++.|++||++.. +.+..+..
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~-- 156 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHY------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------TLVAIFGG-- 156 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEE------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT------EEEEEECS--
T ss_pred ecCCCEEEEEEchhceEeeee------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC------eEEEEecc--
Confidence 99999999999 567777776 45667889999999 8999999999999999999743 33333311
Q ss_pred CcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-CEEEEeCC----------------------CCCCcccccCcc
Q psy13998 193 NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-RVITSFGS----------------------EGSEEGQLKFPR 249 (319)
Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~~~~~~~~----------------------~~~~~~~~~~~~ 249 (319)
...+...+.+++++|+++++++++.++.|++||... +....+.. ......+...+.
T Consensus 157 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 157 -VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp -TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred -cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 123556788999999999999999999999999753 21111100 000012555678
Q ss_pred eEEEcCCCcEEEEeCCCCEEEEEcC-CCc--------------eEEeecccCCCCCCCCCcceEEEccC--CcEEEEeCC
Q psy13998 250 GVAVDDQGYISVGDSGNNRIQIFTP-DGQ--------------FLRAFGCWGSGDGEFKGLEGVAVMSN--GNILVCDRE 312 (319)
Q Consensus 250 ~i~~~~~g~~~v~~~~~~~i~~~~~-~g~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~--g~~~v~~~~ 312 (319)
+++++ ++++++++.++.|++|+. .++ .+..+ ..+...+.+++++|+ ++++++++.
T Consensus 236 ~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 236 CVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF------DYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp EEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE------ECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred EEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc------cccCCcEEEEEEcCCCCCcEEEEEec
Confidence 89998 679999999999999994 332 24444 456667899999999 999999999
Q ss_pred CCeEEeC
Q psy13998 313 NHRIQVF 319 (319)
Q Consensus 313 ~~~i~v~ 319 (319)
|+.|++|
T Consensus 308 dg~i~vw 314 (366)
T 3k26_A 308 VGKLYVW 314 (366)
T ss_dssp TSCEEEE
T ss_pred CCcEEEE
Confidence 9999998
No 98
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.93 E-value=1.8e-21 Score=153.66 Aligned_cols=235 Identities=12% Similarity=0.151 Sum_probs=180.2
Q ss_pred CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-E----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998 53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-A----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSD 127 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~ 127 (319)
.....|.+|+++++|++|++...++.|.+ ++.. ..... . ...|.+++++++|++|++...++.|.+|+.+
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~----~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISS----LDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEE----ECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEE----ECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 34678999999999999999988899999 7665 22211 1 2468899999999999998888899999977
Q ss_pred CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207 (319)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (319)
++.. .+... .....|.+++++++|++|++...++.|..++.++.. .. +.. ......|.+++++
T Consensus 92 g~~~-~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-------~~-~~~----~~~~~~~~~i~~d 154 (300)
T 2qc5_A 92 GGFT-EYPLP----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTI-------YE-YDL----PNKGSYPAFITLG 154 (300)
T ss_dssp SCEE-EEECS----STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE-------EE-EEC----SSTTCCEEEEEEC
T ss_pred CCeE-EecCC----CCCCCCccceECCCCCEEEEccCCCeEEEECCCCCE-------EE-ccC----CCCCCCceeEEEC
Confidence 7653 33221 123578999999999999999888899999887532 11 100 1234578999999
Q ss_pred CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCC
Q psy13998 208 NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGS 287 (319)
Q Consensus 208 ~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~ 287 (319)
++|++|++...++.|++++.+++..... . ......|.+++++++|++|++....+.|.+|+.+++......
T Consensus 155 ~~g~l~v~~~~~~~i~~~~~~g~~~~~~-~----~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~---- 225 (300)
T 2qc5_A 155 SDNALWFTENQNNSIGRITNTGKLEEYP-L----PTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDI---- 225 (300)
T ss_dssp TTSSEEEEETTTTEEEEECTTCCEEEEE-C----SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEEC----
T ss_pred CCCCEEEEecCCCeEEEECCCCcEEEee-C----CCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEEC----
Confidence 9999999998889999999977655422 1 233457899999999999999998899999999777654321
Q ss_pred CCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 288 GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 288 ~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
......|.+|+++++|++|+++..++.|.+|
T Consensus 226 -~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 226 -PTPNARPHAITAGKNSEIWFTEWGANQIGRI 256 (300)
T ss_dssp -SSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred -CCCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence 2345679999999999999999887777654
No 99
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=1.6e-23 Score=175.58 Aligned_cols=276 Identities=13% Similarity=0.151 Sum_probs=205.2
Q ss_pred hhhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEc--CCCcEEEE
Q psy13998 5 SEAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVG--PDNSIVVA 72 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~--~~g~~~~~ 72 (319)
.+.+++.++.++..+. ...|..+.++|++ ++.+++.+..+..|+...+ |...+.++++. ++++++++
T Consensus 144 i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s 222 (464)
T 3v7d_B 144 IRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred EEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence 4466777777666665 6788999999887 7888888888888865543 56788889988 57889999
Q ss_pred eCCCCeEEEeccccccccceeeE-----------------------Eec--CceeeEEcCCCcEEEEcCCCCeEEEEc-C
Q psy13998 73 DSSNHRVQVCFPHFDLKTNCVFL-----------------------AFT--WPRGIAVGPDNSIVVADSSNHRVQVFQ-S 126 (319)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~-----------------------~~~--~~~~l~~~~~g~~~~~~~~~~~i~~~~-~ 126 (319)
++.|+.|++ |+..+..... .+. ...-.+++++++++++++.++.|++|| .
T Consensus 223 ~s~d~~i~v----wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~ 298 (464)
T 3v7d_B 223 GSRDNTLHV----WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 298 (464)
T ss_dssp EETTSCEEE----EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EcCCCcEEE----eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 999999999 8776543221 111 111223456788999999999999999 5
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
+++.+..+ .++...+.+++++++++.+++++.++.|++||+.. ++.+..+ ..+...+.++++
T Consensus 299 ~~~~~~~~------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~------~~~~~~~------~~h~~~v~~~~~ 360 (464)
T 3v7d_B 299 QMKCLYIL------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN------GELMYTL------QGHTALVGLLRL 360 (464)
T ss_dssp TTEEEEEE------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT------TEEEEEE------CCCSSCEEEEEE
T ss_pred CCcEEEEe------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------CcEEEEE------eCCCCcEEEEEE
Confidence 67777776 45667889999999999999999999999999874 2445444 345556777888
Q ss_pred cCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998 207 SNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC 284 (319)
Q Consensus 207 ~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~ 284 (319)
+ +.++++++.++.|++||.. +...... .+......++++++++++++++ ++.|++|+ .+|+.+....
T Consensus 361 ~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~- 429 (464)
T 3v7d_B 361 S--DKFLVSAAADGSIRGWDANDYSRKFSY-------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI- 429 (464)
T ss_dssp C--SSEEEEEETTSEEEEEETTTCCEEEEE-------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT-
T ss_pred c--CCEEEEEeCCCcEEEEECCCCceeeee-------cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh-
Confidence 6 5788999999999999965 4444333 1223456788999999988887 89999999 5778776532
Q ss_pred cCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 285 WGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
..+...+.+++++ +..++++++.++.+.+|
T Consensus 430 ----~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 430 ----LKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ----TTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred ----ccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 3456779999997 44677777777776553
No 100
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.92 E-value=2.6e-21 Score=152.61 Aligned_cols=235 Identities=11% Similarity=0.160 Sum_probs=177.9
Q ss_pred CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-E----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998 53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-A----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSD 127 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~ 127 (319)
.+...|.+|+++++|++|++...++.|.+ |+.. ..... . ...|.+++++++|++|++...++.|.+|+.+
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~----~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISC----INLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEE----ECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEE----EcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 34578999999999999999888889999 7665 22211 1 2368899999999999998888899999977
Q ss_pred CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207 (319)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (319)
++.. .+.. ......|.+++++++|++|++...++.|.+|+..+.. .... . ......|.+++++
T Consensus 87 g~~~-~~~~----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~-------~~~~-~----~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 87 GIIK-EYTL----PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKI-------REYE-L----PNKGSYPSFITLG 149 (299)
T ss_dssp SCEE-EEEC----SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-------EEEE-C----SSTTCCEEEEEEC
T ss_pred CcEE-EEeC----CCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCE-------EEec-C----CCCCCCCceEEEc
Confidence 6643 2321 1234578999999999999999888999999885432 1111 0 1234568999999
Q ss_pred CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCC
Q psy13998 208 NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGS 287 (319)
Q Consensus 208 ~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~ 287 (319)
++|++|+++..++.|.+|+.+++...... ......|.+++++++|++|++...++.|.+|+.+++... +..
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~~g~~~~~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~--- 220 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITESGDITEFKI-----PTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITE-FKI--- 220 (299)
T ss_dssp TTSCEEEEETTTTEEEEECTTCCEEEEEC-----SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE-EEC---
T ss_pred CCCCEEEEeCCCCEEEEEcCCCcEEEeeC-----CCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEE-EEC---
Confidence 99999999988889999999766544311 223456889999999999999988899999999776543 311
Q ss_pred CCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 288 GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 288 ~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
......|.+++++++|++|+++..++.|.+|
T Consensus 221 -~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 251 (299)
T 2z2n_A 221 -PTPNARPHAITAGAGIDLWFTEWGANKIGRL 251 (299)
T ss_dssp -SSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred -CCCCCCceeEEECCCCCEEEeccCCceEEEE
Confidence 2345679999999999999998777777654
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=3e-24 Score=172.81 Aligned_cols=263 Identities=10% Similarity=0.001 Sum_probs=195.4
Q ss_pred cccccccCCCccchhccccceeeeecccCCCC-----------CcCCCCcceEEcCCCc-EEEEeCCCCeEEEecccccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP-----------GCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDL 88 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~ 88 (319)
...|.+++|+|++.+++++..+..+..|.... +|...+.+++|+|+++ ++++++.++.|++ |+.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~----wd~ 86 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK----VDL 86 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE----ECS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE----EEe
Confidence 56799999999999999887777766664332 3446789999999999 9999999999999 887
Q ss_pred -ccceeeE-----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-C---------CcEEEEecCCCccCCCCCCceeEEE
Q psy13998 89 -KTNCVFL-----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-D---------GTFVGKFGSMGNKAGQLEHPHYIAV 152 (319)
Q Consensus 89 -~~~~~~~-----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (319)
.+..... +-..+.++++++ ++++++++.++.|++||. . ++.+..+ .+...+.++++
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~ 158 (342)
T 1yfq_A 87 IGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-------KVKNKIFTMDT 158 (342)
T ss_dssp SSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-------SSCCCEEEEEE
T ss_pred ccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-------eeCCceEEEEe
Confidence 6544322 223568899999 889999999999999993 2 2222222 24467889999
Q ss_pred eCCCeEEEEeCCCCEEEEEecCC-ceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeCCC-
Q psy13998 153 SNTNRVIVSDSNNHRVQIFDVNG-RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNG- 229 (319)
Q Consensus 153 ~~~g~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~~- 229 (319)
++++ +++++.++.|.+|+++. ... ...... ..+...+.+++++| +++++++++.++.|++|+.+.
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~----~~~~~~------~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDD----NGTIEE------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTC----CCEEEE------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred cCCc--EEEEeCCCeEEEEECCccccc----cceeee------cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 9877 77778899999999875 210 011111 22345678899999 999999999999999998532
Q ss_pred ------CEEEEeCCCCC---CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCC-CCCcceE
Q psy13998 230 ------RVITSFGSEGS---EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGE-FKGLEGV 298 (319)
Q Consensus 230 ------~~~~~~~~~~~---~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~l 298 (319)
.....+..... ...+...+.+++++|+++++++++.++.|++||. +++.+..+ ..+ ...+.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~~h~~~v~~~ 300 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF------AKFNEDSVVKI 300 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC------CCCSSSEEEEE
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh------hcccCCCceEe
Confidence 34444421110 0112337889999999999999999999999995 57777777 555 7788888
Q ss_pred EEccCCcEEEEeCCCCe
Q psy13998 299 AVMSNGNILVCDRENHR 315 (319)
Q Consensus 299 ~~~~~g~~~v~~~~~~~ 315 (319)
+ ++++++++++.|+.
T Consensus 301 ~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 301 A--CSDNILCLATSDDT 315 (342)
T ss_dssp E--ECSSEEEEEEECTH
T ss_pred c--CCCCeEEEEecCCc
Confidence 8 99999999998886
No 102
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.6e-23 Score=172.73 Aligned_cols=240 Identities=11% Similarity=0.140 Sum_probs=171.4
Q ss_pred cCCCCcceEEcCCCcEE-EEeCCCCeEEEeccccccc--cceeeEEe------cCceeeEEcCCCcEEEEcCCCCeEEEE
Q psy13998 54 CFTWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLK--TNCVFLAF------TWPRGIAVGPDNSIVVADSSNHRVQVF 124 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~-~~~~~~~~v~~~~~~~~~~--~~~~~~~~------~~~~~l~~~~~g~~~~~~~~~~~i~~~ 124 (319)
+...+.+++|+|+|+++ ++++.++.|++ |+.. +......+ ..+.+++|+|+++++++++.++.|++|
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~i----wd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLV----FDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEE----EEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEE----EECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 34478999999999985 88889999999 8876 44444432 356899999999999998889999999
Q ss_pred c-CCCcEEE-EecCCCccCCCCCCceeEEEeCC---CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998 125 Q-SDGTFVG-KFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE 199 (319)
Q Consensus 125 ~-~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~---g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (319)
+ .+++... ... ...+|...+.+++++|+ ++++++++.++.|++||+... +.+..+. ..+..
T Consensus 177 ~~~~~~~~~~~~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~-----~~h~~ 242 (450)
T 2vdu_B 177 DINSIPEEKFTQE---PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC------FIVDKWL-----FGHKH 242 (450)
T ss_dssp ETTSCCCSSCCCC---CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT------TCEEEEC-----CCCSS
T ss_pred ecCCcccccccce---eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC------ceeeeee-----cCCCC
Confidence 9 3443221 000 11345677899999999 999999999999999998742 3333321 34556
Q ss_pred CceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC-------------------CcccccCcceEEEcCCCcE
Q psy13998 200 HPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGS-------------------EEGQLKFPRGVAVDDQGYI 259 (319)
Q Consensus 200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~-------------------~~~~~~~~~~i~~~~~g~~ 259 (319)
.+.+++++ +++++++++.++.|++||. +++.+..+..... .......+.+++++|++++
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 78899999 9999999999999999995 5666666531100 0011234678999999987
Q ss_pred EEEeC-CCCEEEEEcC---CC---ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC------CCeEEeC
Q psy13998 260 SVGDS-GNNRIQIFTP---DG---QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE------NHRIQVF 319 (319)
Q Consensus 260 ~v~~~-~~~~i~~~~~---~g---~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~------~~~i~v~ 319 (319)
+++++ .++.|++|+. .+ +.+..+ ..+ ..+.+++|+|++.+++++.. ++.|++|
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~------~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQII------TFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEE------ECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEe------ccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 77766 8999999997 33 344444 334 67999999996444444443 3446654
No 103
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=8.4e-23 Score=171.25 Aligned_cols=256 Identities=17% Similarity=0.243 Sum_probs=190.6
Q ss_pred CCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe---
Q psy13998 29 TTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF--- 97 (319)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--- 97 (319)
+++++.++.+++.+..+..|+.. .+|...+.++++++++ ++++++.|++|++ |+..+......+
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v----wd~~~~~~~~~~~~h 202 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV----WDIKKGCCTHVFEGH 202 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE----EETTTTEEEEEECCC
T ss_pred EEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE----EECCCCcEEEEECCC
Confidence 34466788888888888888654 3567889999999887 8899999999999 998877666544
Q ss_pred -cCceeeEEc--CCCcEEEEcCCCCeEEEEcC-CCcEEEEecCC-----------------CccCCCCCCceeEEEeCCC
Q psy13998 98 -TWPRGIAVG--PDNSIVVADSSNHRVQVFQS-DGTFVGKFGSM-----------------GNKAGQLEHPHYIAVSNTN 156 (319)
Q Consensus 98 -~~~~~l~~~--~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~g 156 (319)
..+.++++. ++++++++++.++.|++|+. .+......... ....++...+.+ +++++
T Consensus 203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~ 280 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHG 280 (464)
T ss_dssp SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEET
T ss_pred CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCC
Confidence 356778887 57789999999999999994 33321110000 001233333444 46678
Q ss_pred eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEe
Q psy13998 157 RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSF 235 (319)
Q Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~ 235 (319)
+++++++.++.|++||+... +.+..+ ..+...+.+++++++++++++++.++.|++||. +++.+..+
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~------~~~~~~------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQM------KCLYIL------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT------EEEEEE------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCC------cEEEEe------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 89999999999999998743 444444 345567889999999999999999999999996 67777777
Q ss_pred CCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998 236 GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~ 314 (319)
.++...+..++++ +.++++++.|+.|++||. +++..... .+...+..++++++++++++++ ++
T Consensus 349 ------~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~-dg 412 (464)
T 3v7d_B 349 ------QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-------HHTNLSAITTFYVSDNILVSGS-EN 412 (464)
T ss_dssp ------CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-------ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred ------eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-------cCCCCccEEEEEeCCCEEEEec-CC
Confidence 5566678888887 578999999999999995 44444443 2344567789999999998887 88
Q ss_pred eEEeC
Q psy13998 315 RIQVF 319 (319)
Q Consensus 315 ~i~v~ 319 (319)
.|++|
T Consensus 413 ~i~iw 417 (464)
T 3v7d_B 413 QFNIY 417 (464)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99998
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.3e-23 Score=170.89 Aligned_cols=241 Identities=12% Similarity=0.177 Sum_probs=175.7
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce---eeEEec----------------------------------
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC---VFLAFT---------------------------------- 98 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~---------------------------------- 98 (319)
..+.+++++++|++++++ .++.|++ |+..+++ .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v----~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILS----FKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEE----EEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEE----EECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 345789999999966665 4678999 8776655 222111
Q ss_pred ------------------------CceeeEEcCCCcEE-EEcCCCCeEEEEc-C--CCcEEEEecCCCccCCCCCCceeE
Q psy13998 99 ------------------------WPRGIAVGPDNSIV-VADSSNHRVQVFQ-S--DGTFVGKFGSMGNKAGQLEHPHYI 150 (319)
Q Consensus 99 ------------------------~~~~l~~~~~g~~~-~~~~~~~~i~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l 150 (319)
.+.+++|+|+++.+ ++++.++.|++|+ . .++.+..+.. ..+...+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~v~~~ 155 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR----FCFSKRPNAI 155 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE----EECSSCEEEE
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec----ccCCCCceEE
Confidence 46889999999874 8888899999999 4 5666665521 1233567899
Q ss_pred EEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC---CcEEEEeCCCCeEEEEeC
Q psy13998 151 AVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHRVQIFDV 227 (319)
Q Consensus 151 ~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~i~~~~~ 227 (319)
+|+|+++++++++.++.+.+|++....... .....+ ..+...+.+++++|+ ++++++++.++.|++||.
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~--~~~~~~------~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEK--FTQEPI------LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSS--CCCCCS------EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCccccc--ccceee------ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence 999999999999999999999986421100 000011 335567889999999 889999999999999995
Q ss_pred -CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccC-------------------
Q psy13998 228 -NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWG------------------- 286 (319)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~------------------- 286 (319)
.+..+..+. .++...+.+++|+ +++++++++.++.|++|| .+++.+..+....
T Consensus 228 ~~~~~~~~~~-----~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 228 PQCFIVDKWL-----FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp SCTTCEEEEC-----CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred CCCceeeeee-----cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence 566565531 3566678999999 999999999999999999 5677766653110
Q ss_pred CCCCCCCCcceEEEccCCcEEEEeC-CCCeEEeC
Q psy13998 287 SGDGEFKGLEGVAVMSNGNILVCDR-ENHRIQVF 319 (319)
Q Consensus 287 ~~~~~~~~~~~l~~~~~g~~~v~~~-~~~~i~v~ 319 (319)
........+.+++++|+++++++++ .++.|++|
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 0002234578999999999776666 89999998
No 105
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=1.1e-22 Score=176.46 Aligned_cols=234 Identities=12% Similarity=0.141 Sum_probs=184.3
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc----eeeEEe----cC-ceeeEEcC--CCcEEEEcCCCCe
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN----CVFLAF----TW-PRGIAVGP--DNSIVVADSSNHR 120 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~----~~-~~~l~~~~--~g~~~~~~~~~~~ 120 (319)
..+...+.+++|+|+|+++++++ ++.|++ |+..+. .....+ .. +.+++++| +++++++++.++.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v----~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~ 89 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFV----RCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 89 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEE----EECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEE----EECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCE
Confidence 35567899999999999888877 789999 888765 444433 35 78999999 9999999999999
Q ss_pred EEEEcC-CC--------cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC----CEEEEEecCCceeeecCceeee
Q psy13998 121 VQVFQS-DG--------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----HRVQIFDVNGRVFQSDGTFVGK 187 (319)
Q Consensus 121 i~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~ 187 (319)
|++|+. ++ +....+ ..+...+.+++++|+++++++++.+ +.|.+|+.. +.+..
T Consensus 90 v~vw~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--------~~~~~ 155 (615)
T 1pgu_A 90 VIVWGWTFDKESNSVEVNVKSEF------QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--------NSLGE 155 (615)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEE------ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--------CEEEE
T ss_pred EEEEeCCCCcccccccccccchh------hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--------Cccee
Confidence 999995 33 444444 3455678999999999988888766 688888843 33333
Q ss_pred ecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCccccc---CcceEEEcCC-CcEEE
Q psy13998 188 FGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLK---FPRGVAVDDQ-GYISV 261 (319)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~-g~~~v 261 (319)
+ ..+...+.+++++|++. ++++++.++.|++||. .++.+..+ ..+.. .+.+++++|+ +++++
T Consensus 156 ~------~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~ 223 (615)
T 1pgu_A 156 V------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD------RTHHKQGSFVRDVEFSPDSGEFVI 223 (615)
T ss_dssp C------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE------CSSSCTTCCEEEEEECSTTCCEEE
T ss_pred e------ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee------cccCCCCceEEEEEECCCCCCEEE
Confidence 3 34556788999999986 8899999999999996 45566666 44555 6889999999 99999
Q ss_pred EeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 262 GDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 262 ~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+++.++.|++|+ .+++.+..+... ...+...+.+++++ +++++++++.|+.|++|
T Consensus 224 ~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~w 279 (615)
T 1pgu_A 224 TVGSDRKISCFDGKSGEFLKYIEDD--QEPVQGGIFALSWL-DSQKFATVGADATIRVW 279 (615)
T ss_dssp EEETTCCEEEEETTTCCEEEECCBT--TBCCCSCEEEEEES-SSSEEEEEETTSEEEEE
T ss_pred EEeCCCeEEEEECCCCCEeEEeccc--ccccCCceEEEEEc-CCCEEEEEcCCCcEEEE
Confidence 999999999999 567777766210 01566789999999 99999999999999998
No 106
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.92 E-value=4.2e-21 Score=151.45 Aligned_cols=264 Identities=13% Similarity=0.162 Sum_probs=185.2
Q ss_pred ccccccCCCccchhccccc---eeeeecccCCC-----CCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998 22 SGIGQVGTTPRSQYLQKRR---LQFKIGSRGSE-----PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV 93 (319)
Q Consensus 22 ~~i~~~~~~~~~~~l~~~~---~~~~~~~~~~~-----~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~ 93 (319)
..+..+++++++.+..... ....+...+.. +.....|.+|+++++|++|++...++.|.+ |+......
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~----~~~~g~~~ 90 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGR----ITKKGIIK 90 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE----ECTTSCEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEE----ECCCCcEE
Confidence 3456666677766544322 12222211111 112357899999999999999888889999 66542211
Q ss_pred eEE----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEE
Q psy13998 94 FLA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ 169 (319)
Q Consensus 94 ~~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~ 169 (319)
... ...|.+++++++|++|++...++.|.+|+.+++...... ......|.+++++++|++|++...++.|.
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYEL-----PNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEC-----SSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecC-----CCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 111 236889999999999999888889999998766543321 12345789999999999999998889999
Q ss_pred EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998 170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPR 249 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (319)
+|+..+.. .. +.. ......|.+++++++|++|++....+.|.+|++++.... +.. ......|.
T Consensus 166 ~~~~~g~~-------~~-~~~----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~----~~~~~~~~ 228 (299)
T 2z2n_A 166 RITESGDI-------TE-FKI----PTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITE-FKI----PTPNARPH 228 (299)
T ss_dssp EECTTCCE-------EE-EEC----SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE-EEC----SSTTCCEE
T ss_pred EEcCCCcE-------EE-eeC----CCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEE-EEC----CCCCCCce
Confidence 99985422 11 100 123456889999999999999988899999999666443 311 22345789
Q ss_pred eEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998 250 GVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317 (319)
Q Consensus 250 ~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~ 317 (319)
+++++++|++|++...++.|.+|+++++.. .+.. ......|.++++ ++|++|+++..++.++
T Consensus 229 ~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~-~~~~----~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 229 AITAGAGIDLWFTEWGANKIGRLTSNNIIE-EYPI----QIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp EEEECSTTCEEEEETTTTEEEEEETTTEEE-EEEC----SSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred eEEECCCCCEEEeccCCceEEEECCCCceE-EEeC----CCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 999999999999998889999999877543 3321 233457999999 9999999987554443
No 107
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.92 E-value=5.3e-21 Score=150.95 Aligned_cols=230 Identities=14% Similarity=0.162 Sum_probs=175.1
Q ss_pred CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee-EE----ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc
Q psy13998 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF-LA----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT 129 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~----~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~ 129 (319)
...|.+|+++++|++|++...++.|.+ ++.. +... .. ...|.+++++++|++|+++..++.|.+++.+++
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~----~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~ 135 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGK----LSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGT 135 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEE----ECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSC
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEE----ECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCC
Confidence 467899999999999999988899999 7665 2221 11 246889999999999999888889999997776
Q ss_pred EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998 130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209 (319)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (319)
..... . ......|.+++++++|++|++...++.|.+++..+.. .. +.. ......|.+++++++
T Consensus 136 ~~~~~-~----~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~-------~~-~~~----~~~~~~~~~i~~d~~ 198 (300)
T 2qc5_A 136 IYEYD-L----PNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKL-------EE-YPL----PTNAAAPVGITSGND 198 (300)
T ss_dssp EEEEE-C----SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE-------EE-EEC----SSTTCCEEEEEECTT
T ss_pred EEEcc-C----CCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcE-------EE-eeC----CCCCCCcceEEECCC
Confidence 65332 1 1234578999999999999999888999999886532 11 111 223457899999999
Q ss_pred CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCC
Q psy13998 210 NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGD 289 (319)
Q Consensus 210 g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 289 (319)
|++|++....+.|.+|+.++....... ......|.+++++++|++|++...++.|.+|+++++..... . .
T Consensus 199 g~l~v~~~~~~~i~~~~~~g~~~~~~~-----~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~-~----~ 268 (300)
T 2qc5_A 199 GALWFVEIMGNKIGRITTTGEISEYDI-----PTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQ-L----Q 268 (300)
T ss_dssp SSEEEEETTTTEEEEECTTCCEEEEEC-----SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEE-C----C
T ss_pred CCEEEEccCCCEEEEEcCCCcEEEEEC-----CCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEE-C----C
Confidence 999999988889999999776554321 22355789999999999999998889999999877654321 1 2
Q ss_pred CCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998 290 GEFKGLEGVAVMSNGNILVCDRENHRIQV 318 (319)
Q Consensus 290 ~~~~~~~~l~~~~~g~~~v~~~~~~~i~v 318 (319)
.....|.+++++++|++|+++. + .|..
T Consensus 269 ~~~~~~~~i~~~~~g~l~v~~~-~-~i~~ 295 (300)
T 2qc5_A 269 TENAEPHGITFGKDGSVWFALK-C-KIGK 295 (300)
T ss_dssp STTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred ccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence 2345699999999999999887 4 5543
No 108
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.6e-21 Score=156.34 Aligned_cols=257 Identities=11% Similarity=0.155 Sum_probs=182.5
Q ss_pred cccccCCCccchhccccce-------eeeecccCCCCCc-------CCCCcceEEcCCCc-EEEEeCCCCeEEEeccccc
Q psy13998 23 GIGQVGTTPRSQYLQKRRL-------QFKIGSRGSEPGC-------FTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFD 87 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~-------~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~ 87 (319)
.+..++++|++.++..... ...+..++...++ -..|.+++++++|+ +|+++..++.|.+ |+
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~----~d 117 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTA----ID 117 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEE----EE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEE----Ee
Confidence 4556778888776554331 3345555444332 24689999999998 7888888899999 88
Q ss_pred cccceeeEEecC-------------ceeeEEcCCCc-EEEEc-CCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEE
Q psy13998 88 LKTNCVFLAFTW-------------PRGIAVGPDNS-IVVAD-SSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIA 151 (319)
Q Consensus 88 ~~~~~~~~~~~~-------------~~~l~~~~~g~-~~~~~-~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (319)
..+.+....+.. |.+++++|+|+ +|+++ ..++.|.+|| .+++....+. .....+.+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~------~~~~~~~~~~ 191 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ------NTGKMSTGLA 191 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC------CCCTTCCCCE
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec------CCCCccceEE
Confidence 877666554332 68899999987 56665 3578899999 5566666663 1224578899
Q ss_pred EeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeC-CC
Q psy13998 152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDV-NG 229 (319)
Q Consensus 152 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~-~~ 229 (319)
++|+|+.+++...++.+.+||..+. +....+.... ......+.+++++|+++ +|+++..++.|++||. ++
T Consensus 192 ~s~dg~~l~~~~~~~~i~~~d~~~~------~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 192 LDSEGKRLYTTNADGELITIDTADN------KILSRKKLLD--DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp EETTTTEEEEECTTSEEEEEETTTT------EEEEEEECCC--SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC------eEEEEEEcCC--CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 9999987777777899999998753 3333332111 12334577899999986 6777777799999996 56
Q ss_pred CEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc-E
Q psy13998 230 RVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-I 306 (319)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~ 306 (319)
+.+..+.. ..+.+++++|+|+ +|+++..++.|.+||. +++.+..+. ....|.+++++|||+ +
T Consensus 264 ~~~~~~~~--------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 264 NILAKVAA--------PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-------TPTHPNSLALSADGKTL 328 (353)
T ss_dssp CEEEEEEC--------SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-------CCSEEEEEEECTTSCEE
T ss_pred cEEEEEEc--------CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-------cCCCCCeEEEcCCCCEE
Confidence 66666521 2357899999987 7888888999999995 577776662 223689999999998 6
Q ss_pred EEEeCC
Q psy13998 307 LVCDRE 312 (319)
Q Consensus 307 ~v~~~~ 312 (319)
|++...
T Consensus 329 ~v~~~~ 334 (353)
T 3vgz_A 329 YVSVKQ 334 (353)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 666654
No 109
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.91 E-value=1.2e-22 Score=164.69 Aligned_cols=198 Identities=9% Similarity=0.086 Sum_probs=148.3
Q ss_pred CCCcceEEcCCCcEEEE--eCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE
Q psy13998 56 TWPRGIAVGPDNSIVVA--DSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF 130 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~ 130 (319)
..+..++|+|||+++++ ++.|+.|++ |+..+......+ ..+.+++|+|+|+++++++.++.+..|..+++.
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~i----wd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRI----IDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC 209 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEE----EETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEE----eECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc
Confidence 45678999999997654 456899999 888877665543 357899999999999988866555545577766
Q ss_pred EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC----EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH----RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
...... ..+...+.+++|+|+++.+++++.++ .+..|+........ .....+ ..+...+.++++
T Consensus 210 ~~~~~~----~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~--~~~~~~------~~~~~~V~~~~~ 277 (365)
T 4h5i_A 210 IARKTD----FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV--LRSKQV------TNRFKGITSMDV 277 (365)
T ss_dssp EEEECC----CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE--EEEEEE------ESSCSCEEEEEE
T ss_pred eeeeec----CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc--eeeeee------cCCCCCeEeEEE
Confidence 544322 23445678999999999998877655 57778765321110 001111 344566789999
Q ss_pred cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
+|+|+++++++.|+.|++||. +++.+..+. .+|...+.+++|+|||+++++++.|++|++|+.
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-----~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKDLSMSKIFK-----QAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTTTEEEEEET-----TSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred CCCCCceEEEcCCCEEEEEECCCCcEEEEec-----CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 999999999999999999996 566666652 467778999999999999999999999999994
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=1.7e-22 Score=166.34 Aligned_cols=238 Identities=13% Similarity=0.166 Sum_probs=174.9
Q ss_pred CCcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccce-------eeE----EecCceeeEEcCCC-cEEEEcCCC
Q psy13998 52 PGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNC-------VFL----AFTWPRGIAVGPDN-SIVVADSSN 118 (319)
Q Consensus 52 ~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~----~~~~~~~l~~~~~g-~~~~~~~~~ 118 (319)
.+|...+.+++|+| +++++++++.|+.|++ |+..+.+ ... +...+.+++++|++ +++++++.+
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~v----w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMV----WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEE----EECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEE----EEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence 46778899999999 8999999999999999 8876542 222 33467899999998 699999999
Q ss_pred CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCC
Q psy13998 119 HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ 197 (319)
Q Consensus 119 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (319)
+.|++|| .+++.+..+.. ..+...+.+++++|+++++++++.++.|++||++.. +.+..+. ..+
T Consensus 154 g~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~-----~~~ 218 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGP----DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG------TVVAEKD-----RPH 218 (402)
T ss_dssp SCEEEEETTTTEEEEEECT----TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT------EEEEEEE-----CSS
T ss_pred CEEEEEECCCCCccEEEec----CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC------ceeeeec-----cCC
Confidence 9999999 56666666521 134567899999999999999999999999998743 3333331 111
Q ss_pred C-CCceeEEEcCCCcEEEEe---CCCCeEEEEeCCC-CE-EEEeCCCCCCcccccCcceEEEcCCCcEE-EEeCCCCEEE
Q psy13998 198 L-EHPHYIAVSNTNRVIVSD---SNNHRVQIFDVNG-RV-ITSFGSEGSEEGQLKFPRGVAVDDQGYIS-VGDSGNNRIQ 270 (319)
Q Consensus 198 ~-~~~~~~~~~~~g~~~v~~---~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~~-v~~~~~~~i~ 270 (319)
. ..+..+++++++++++++ ..++.|++||... .. ..... ..+...+..++++|+++++ ++++.++.|+
T Consensus 219 ~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~ 293 (402)
T 2aq5_A 219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-----LDTSSGVLLPFFDPDTNIVYLCGKGDSSIR 293 (402)
T ss_dssp CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-----CCCCSSCEEEEEETTTTEEEEEETTCSCEE
T ss_pred CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-----ccCCCceeEEEEcCCCCEEEEEEcCCCeEE
Confidence 1 236789999999999988 7899999999643 22 22221 1233457889999998766 5677899999
Q ss_pred EEcC-CCce-EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 271 IFTP-DGQF-LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 271 ~~~~-~g~~-~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+|+. +++. +..+.. ..+...+.+++|+|++.+++++ ++.+++|
T Consensus 294 i~d~~~~~~~~~~l~~----~~~~~~v~~~~~sp~~~~~~s~--~~~~~~~ 338 (402)
T 2aq5_A 294 YFEITSEAPFLHYLSM----FSSKESQRGMGYMPKRGLEVNK--CEIARFY 338 (402)
T ss_dssp EEEECSSTTCEEEEEE----ECCSSCCSEEEECCGGGSCGGG--TEEEEEE
T ss_pred EEEecCCCcceEeecc----cccCCcccceEEecccccceec--ceeEEEE
Confidence 9994 4442 333321 1245679999999999877654 4577776
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=2.6e-22 Score=165.19 Aligned_cols=232 Identities=17% Similarity=0.208 Sum_probs=171.8
Q ss_pred CcceEEcCCCcEEE-EeCCCCeEEEeccccccccceeeE--------EecCceeeEEcC-CCcEEEEcCCCCeEEEEc-C
Q psy13998 58 PRGIAVGPDNSIVV-ADSSNHRVQVCFPHFDLKTNCVFL--------AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQ-S 126 (319)
Q Consensus 58 ~~~v~~~~~g~~~~-~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~-~ 126 (319)
...++++++...++ +++.++.|++ |+..+.+... +...+.+++|+| +++++++++.++.|++|+ .
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v----~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLV----LPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEE----EETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEE----EECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 45688888776444 4688999999 8775443221 344678999999 889999999999999999 4
Q ss_pred CC-------cEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998 127 DG-------TFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198 (319)
Q Consensus 127 ~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (319)
++ +.+..+ .+|...+.+++++|++ +++++++.++.|++||+... +.+..+.. ..+.
T Consensus 113 ~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~----~~~~ 176 (402)
T 2aq5_A 113 DGGLVLPLREPVITL------EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG------AAVLTLGP----DVHP 176 (402)
T ss_dssp TTCCSSCBCSCSEEE------ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT------EEEEEECT----TTCC
T ss_pred CCCCccccCCceEEe------cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC------CccEEEec----CCCC
Confidence 44 233344 4566788999999997 79999999999999998753 33333310 2344
Q ss_pred CCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCccccc-CcceEEEcCCCcEEEEe---CCCCEEEEEc
Q psy13998 199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLK-FPRGVAVDDQGYISVGD---SGNNRIQIFT 273 (319)
Q Consensus 199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~~~v~~---~~~~~i~~~~ 273 (319)
..+.+++++|++.++++++.++.|++||. +++.+..+. ..+.. .+..++++|++++++++ +.++.|++||
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-----RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-----CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec-----cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence 56789999999999999999999999996 455555541 11222 36889999999999998 7899999999
Q ss_pred CC-Cce-EEeecccCCCCCCCCCcceEEEccCCcEE-EEeCCCCeEEeC
Q psy13998 274 PD-GQF-LRAFGCWGSGDGEFKGLEGVAVMSNGNIL-VCDRENHRIQVF 319 (319)
Q Consensus 274 ~~-g~~-~~~~~~~~~~~~~~~~~~~l~~~~~g~~~-v~~~~~~~i~v~ 319 (319)
.. ++. +.... ..+...+..++++|+++++ ++++.|+.|++|
T Consensus 252 ~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 252 TKHLEEPLSLQE-----LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp TTBCSSCSEEEE-----CCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred CccccCCceEEe-----ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 53 332 22221 2345578999999999855 577789999987
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.5e-23 Score=165.14 Aligned_cols=224 Identities=9% Similarity=0.105 Sum_probs=161.6
Q ss_pred EcCCCcEEEEeCCCCeEEEeccccccccceeeEEe--cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE----------
Q psy13998 63 VGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF--TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF---------- 130 (319)
Q Consensus 63 ~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~---------- 130 (319)
+.++++++++++.|+.|++ |+..+......+ ..+..+.++|+ +++++.|+.|++|+.++..
T Consensus 44 ~~~d~~~l~sg~~Dg~v~i----wd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHF----TQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEEEEEEEEEEETTEEEE----EEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCCCCEEEEECCCCcEEE----EECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3457889999999999999 988776655543 45667777776 8888899999999855432
Q ss_pred EEEecCCCccCCCCCCceeEEEeC--CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998 131 VGKFGSMGNKAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN 208 (319)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (319)
+..+. ..+...+.+++++| +++++++++.++.|++||++.. +...... ..+...+.+++++|
T Consensus 117 ~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~-----~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 117 LREIE-----VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD------SQYIVHS-----AKSDVEYSSGVLHK 180 (343)
T ss_dssp EEEEE-----CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS------CEEEEEC-----CCSSCCCCEEEECT
T ss_pred eEEee-----cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC------cEEEEEe-----cCCCCceEEEEECC
Confidence 22221 23345689999999 9999999999999999998743 3322221 11223478899999
Q ss_pred CCcEEEEeCCCCeEEEEeC-CCCEE-EEeCCCCCCcc-cccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecc
Q psy13998 209 TNRVIVSDSNNHRVQIFDV-NGRVI-TSFGSEGSEEG-QLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGC 284 (319)
Q Consensus 209 ~g~~~v~~~~~~~i~~~~~-~~~~~-~~~~~~~~~~~-~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~ 284 (319)
++.++++++.++.|++||. +++.. ..+ .. |...+.+++|+|+|.++++++ ++.|++||. .++.+..+..
T Consensus 181 dg~~lasg~~dg~i~iwd~~~~~~~~~~~------~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 181 DSLLLALYSPDGILDVYNLSSPDQASSRF------PVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp TSCEEEEECTTSCEEEEESSCTTSCCEEC------CCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred CCCEEEEEcCCCEEEEEECCCCCCCccEE------eccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc
Confidence 9999999999999999996 45444 455 33 567889999999999999888 459999994 4444333311
Q ss_pred cCCCCCCCCCc--ceEEEccCCcEEEEeCC-CCeEEeC
Q psy13998 285 WGSGDGEFKGL--EGVAVMSNGNILVCDRE-NHRIQVF 319 (319)
Q Consensus 285 ~~~~~~~~~~~--~~l~~~~~g~~~v~~~~-~~~i~v~ 319 (319)
. ..+...+ .+++|+|+|+++++++. ++.|++|
T Consensus 254 ~---~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 254 Y---TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIY 288 (343)
T ss_dssp C---BC-----CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred c---ccccccccceEEEECCCCCEEEEecCCCCcEEEE
Confidence 0 1111222 35999999998888777 8999987
No 113
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.91 E-value=1.4e-23 Score=165.57 Aligned_cols=233 Identities=12% Similarity=0.077 Sum_probs=173.3
Q ss_pred cccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcCC--CcEEEEeCCCCeEEEecccccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGPD--NSIVVADSSNHRVQVCFPHFDL 88 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~--g~~~~~~~~~~~v~~~~~~~~~ 88 (319)
...|..++|+|++.++++++.+..+.+|+.. .+|...+.+++|+++ |+++++++.|++|++ |+.
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i----Wd~ 84 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI----WKE 84 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE----EEB
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE----EEc
Confidence 5678899999999999999888877777532 356678899999863 889999999999999 887
Q ss_pred ccce--eeE----EecCceeeEEcCC--CcEEEEcCCCCeEEEEcCC-CcE--EEEecCCCccCCCCCCceeEEEeCC--
Q psy13998 89 KTNC--VFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQVFQSD-GTF--VGKFGSMGNKAGQLEHPHYIAVSNT-- 155 (319)
Q Consensus 89 ~~~~--~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~~~~~-- 155 (319)
.+.. ... +...+.+++|+|+ +.++++++.++.|++|+.. +.. ...+ .+|...+.+++++|+
T Consensus 85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII------DAHAIGVNSASWAPATI 158 (297)
T ss_dssp SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE------ECCSSCEEEEEECCCC-
T ss_pred CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee------ecccCccceEeecCCcc
Confidence 6542 222 2346789999997 7899999999999999943 321 1222 345567889999986
Q ss_pred -----------CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC---cEEEEeCCCCe
Q psy13998 156 -----------NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN---RVIVSDSNNHR 221 (319)
Q Consensus 156 -----------g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~ 221 (319)
++++++++.|+.|++||++..... ......+ ..|...+.+++++|++ .++++++.|+.
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~--~~~~~~l------~~H~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTL------EGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTE--EEEEEEE------CCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce--EEEEEEe------cCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence 468999999999999998642100 0122222 4566778999999984 78999999999
Q ss_pred EEEEeCCCC---EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 222 VQIFDVNGR---VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 222 i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
|++|+.+.. ........ ..+...+.+++|+|+|+++++++.|+.|++|+.
T Consensus 231 v~iWd~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 231 CIIWTQDNEQGPWKKTLLKE---EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp EEEEEESSTTSCCEEEESSS---SCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCCCccceeeeec---ccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 999996431 12222110 223456789999999999999999999999984
No 114
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.4e-21 Score=157.67 Aligned_cols=247 Identities=13% Similarity=0.228 Sum_probs=164.3
Q ss_pred CCCCcceEEcCCCcEEEEeC--CCCeEEEeccccccccce--eeE----EecCceeeEEcCCCc-EEEEcCCCCeEEEEc
Q psy13998 55 FTWPRGIAVGPDNSIVVADS--SNHRVQVCFPHFDLKTNC--VFL----AFTWPRGIAVGPDNS-IVVADSSNHRVQVFQ 125 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~~--~~~~v~~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~ 125 (319)
...|.+++++|+|++|+++. .++.|.+ |++.++. .+. ....|.+++++|+|+ +|++...++.|.+|+
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~----~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAA----WQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEE----EEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEE----EEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 47899999999999776664 3689999 8875443 222 234788999999997 566666788999999
Q ss_pred C--CCcE--EEEecCCCccC---CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998 126 S--DGTF--VGKFGSMGNKA---GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198 (319)
Q Consensus 126 ~--~~~~--~~~~~~~~~~~---~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (319)
. ++.. +..+...+... .....+.+++++|+|++|+++..++.|.+|++.. .+++....... ....
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~-----~g~~~~~~~~~---~~~g 186 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD-----AGQLSEQSVLT---MEAG 186 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT-----TSCEEEEEEEE---CCTT
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC-----CCcEEEeeeEE---cCCC
Confidence 4 3332 22222211110 1224578899999999889988899999999872 11221110000 1112
Q ss_pred CCceeEEEcCCCc-EEEEeCCCCeEEEEeCC---CCE--EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEE
Q psy13998 199 EHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN---GRV--ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQI 271 (319)
Q Consensus 199 ~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~ 271 (319)
..|..++++|+|+ +|+++..++.|.+|+.+ ++. +..+............+.+++++|+|+ +|+++..++.|.+
T Consensus 187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 3578899999997 77778888999999854 332 122211111111124578899999997 6688888899999
Q ss_pred EcCC--Cc--eEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 272 FTPD--GQ--FLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 272 ~~~~--g~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
|+.+ |. .+..+ ..+...|.+++|+|||+ +++++..++.|.+|
T Consensus 267 ~~~~~~g~~~~~~~~------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 267 FAVTADGHLTLIQQI------STEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEECGGGCEEEEEEE------ECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEECCCCcEEEeEEE------ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 9953 32 23333 23345689999999998 66777777888886
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.3e-23 Score=171.44 Aligned_cols=258 Identities=15% Similarity=0.157 Sum_probs=176.6
Q ss_pred hcccccccCCCccchhccccceeeeecccCCC-----C-CcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998 20 LVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-----P-GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV 93 (319)
Q Consensus 20 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~-~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~ 93 (319)
....|..++|+|++ .+.++..|... . .+-..|.+++|+|+|+++++++.++.|++ |+.++ .
T Consensus 51 h~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~i----wd~~~--~ 117 (588)
T 2j04_A 51 NSKNLFHVKEFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSV----FKDNK--M 117 (588)
T ss_dssp BGGGTEEEEEECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEE----EETTE--E
T ss_pred CCccEEEEEECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEE----EeCCc--e
Confidence 35678889999988 23333333211 1 33567999999999999999999999999 87532 3
Q ss_pred eEEec--------CceeeEEcCCCcEEEEcCCCCeEEEEcCCCc--------EEEEecCCCccCCCCCCceeEEEeCCCe
Q psy13998 94 FLAFT--------WPRGIAVGPDNSIVVADSSNHRVQVFQSDGT--------FVGKFGSMGNKAGQLEHPHYIAVSNTNR 157 (319)
Q Consensus 94 ~~~~~--------~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 157 (319)
+..+. .+.+++|+|+|+++++++.+++|++|+..+. .+..+.... .+|...+.+++|+|+|
T Consensus 118 l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~--~gh~~~V~sVawSPdg- 194 (588)
T 2j04_A 118 LTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD--AGSKDWVTHIVWYEDV- 194 (588)
T ss_dssp EEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC--TTCCCCEEEEEEETTE-
T ss_pred eeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc--ccccccEEEEEEcCCc-
Confidence 22221 3678999999999999999999999995443 234432111 3466789999999998
Q ss_pred EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCC
Q psy13998 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGS 237 (319)
Q Consensus 158 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~ 237 (319)
+++++.|+.+++|++.+.... +....+. ..+...+.+++|+ |..+++++ ++.|++|+..+.....+.
T Consensus 195 -Laass~D~tVrlWd~~~~~~~---~~~~tL~-----~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~- 261 (588)
T 2j04_A 195 -LVAALSNNSVFSMTVSASSHQ---PVSRMIQ-----NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK- 261 (588)
T ss_dssp -EEEEETTCCEEEECCCSSSSC---CCEEEEE-----CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-
T ss_pred -EEEEeCCCeEEEEECCCCccc---cceeeec-----ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-
Confidence 677788999999999864210 0111110 1233567889998 56777766 589999998776664441
Q ss_pred CCCCcccccCcceEEE--cCCCcEEEEeCCCCEEEEEcCC-------CceEEe----ecccCC------CCCCCCCcceE
Q psy13998 238 EGSEEGQLKFPRGVAV--DDQGYISVGDSGNNRIQIFTPD-------GQFLRA----FGCWGS------GDGEFKGLEGV 298 (319)
Q Consensus 238 ~~~~~~~~~~~~~i~~--~~~g~~~v~~~~~~~i~~~~~~-------g~~~~~----~~~~~~------~~~~~~~~~~l 298 (319)
.++...+.++++ +|++..++++..+|. ++|..+ +..+.. +..+.. .......+.++
T Consensus 262 ----~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~v 336 (588)
T 2j04_A 262 ----TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGI 336 (588)
T ss_dssp ----CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEE
T ss_pred ----cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEE
Confidence 356677899999 999999999998998 777643 221110 000100 00112347899
Q ss_pred EEccCCcEEEEeC
Q psy13998 299 AVMSNGNILVCDR 311 (319)
Q Consensus 299 ~~~~~g~~~v~~~ 311 (319)
+++|||+++++++
T Consensus 337 a~SPdG~~lA~~~ 349 (588)
T 2j04_A 337 SLSPDGYSIAIVY 349 (588)
T ss_dssp EECTTSSEEEEEE
T ss_pred EECCCCCEEEEEE
Confidence 9999999888764
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=9.9e-22 Score=163.28 Aligned_cols=227 Identities=13% Similarity=0.220 Sum_probs=169.8
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe---------cCceeeEEcCCCcEEEEcCCCCeEEEEc-
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---------TWPRGIAVGPDNSIVVADSSNHRVQVFQ- 125 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~g~~~~~~~~~~~i~~~~- 125 (319)
..|.+++++|+++++++++.++.|++ |+..+.+..... ..+.+++++++++++++++.++.|++||
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~----~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDV----LDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEE----EETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEE----EECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence 45779999998889999999999999 888766655421 2457799999999999999999999999
Q ss_pred CCCcEEEEecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998 126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI 204 (319)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (319)
.+++.+..+. .+...+.+++++++++. |+++..++.|.+||++.. +.+..+. ....+.++
T Consensus 199 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~------~~~~~~~-------~~~~~~~~ 259 (433)
T 3bws_A 199 KTLAYKATVD------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK------LEIRKTD-------KIGLPRGL 259 (433)
T ss_dssp TTCCEEEEEE------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT------EEEEECC-------CCSEEEEE
T ss_pred CCceEEEEEc------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC------cEEEEec-------CCCCceEE
Confidence 5567766662 34567899999998865 567778999999998743 3333332 12347889
Q ss_pred EEcCCCcEEEEeC--------CCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC
Q psy13998 205 AVSNTNRVIVSDS--------NNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP 274 (319)
Q Consensus 205 ~~~~~g~~~v~~~--------~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~ 274 (319)
+++|+++.++++. .++.|++||.. ++....+ .+...+.+++++|+++ +|+++..++.|.+|+.
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-------EEEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-------cCCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 9999997666554 47899999975 4444433 2334678999999985 7888899999999996
Q ss_pred -CCceEEeecccCCCCCCCCCcceEEEccCCcE-EEEeCC--------------CCeEEeC
Q psy13998 275 -DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNI-LVCDRE--------------NHRIQVF 319 (319)
Q Consensus 275 -~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~v~~~~--------------~~~i~v~ 319 (319)
+++.+..+ .+...+.+++++|+|++ ++++.. |+.|++|
T Consensus 333 ~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~ 386 (433)
T 3bws_A 333 KEKKVQKSI-------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386 (433)
T ss_dssp TTTEEEEEE-------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred CCCcEEEEe-------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence 46666665 23456899999999984 444443 4588876
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=1e-21 Score=158.78 Aligned_cols=227 Identities=12% Similarity=0.144 Sum_probs=163.3
Q ss_pred CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE--EecCceeeEEcCCCcEE-EEcCCCCeEEEEc-CC
Q psy13998 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIV-VADSSNHRVQVFQ-SD 127 (319)
Q Consensus 52 ~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~-~~~~~~~~i~~~~-~~ 127 (319)
.+|-..+.+++|+|+|+++++++.+ .+++ |+..+..... +......+++.++++.+ ++++.++.|++|| .+
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~-~~~i----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLK-SFEI----YNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSS-EEEE----EEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccCCCceEEEEECCCCCEEEEEcCC-EEEE----EecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 4567889999999999999988766 5789 8876555443 23356667888777654 6677788999999 67
Q ss_pred CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207 (319)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (319)
++.+..+. +...+.+++++++.. +++ .++.|++||+.... +.+..+. . ....++++
T Consensus 91 ~~~~~~~~-------~~~~v~~v~~~~~~~-~~~--~~~~i~i~d~~~~~-----~~~~~~~------~---~~~~~~~s 146 (355)
T 3vu4_A 91 KQDVSRIK-------VDAPVKDLFLSREFI-VVS--YGDVISVFKFGNPW-----KRITDDI------R---FGGVCEFS 146 (355)
T ss_dssp TEEEEEEE-------CSSCEEEEEECSSEE-EEE--ETTEEEEEESSTTC-----CBSSCCE------E---EEEEEEEE
T ss_pred CcEEEEEE-------CCCceEEEEEcCCEE-EEE--EcCEEEEEECCCCc-----eeeEEec------c---CCceEEEE
Confidence 77777663 224678888887643 332 36889999987420 1111111 0 11224555
Q ss_pred CCCcEEEE-eCCCCeEEEEeCCCCE-----------------EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCE-
Q psy13998 208 NTNRVIVS-DSNNHRVQIFDVNGRV-----------------ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNR- 268 (319)
Q Consensus 208 ~~g~~~v~-~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~- 268 (319)
+ ..+.++ +..++.|++||..... +..+ .+|...+.+++|+|+|+++++++.|++
T Consensus 147 ~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~------~~h~~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 147 N-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI------KAHTNPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp T-TEEEEEESSCTTCEEEEECCC------------------CCEEE------CCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred c-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE------EccCCceEEEEECCCCCEEEEEeCCCCE
Confidence 5 444444 6789999999975422 3444 567778899999999999999999998
Q ss_pred EEEEc-CCCceEEeecccCCCCC-CCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 269 IQIFT-PDGQFLRAFGCWGSGDG-EFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 269 i~~~~-~~g~~~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
|++|| .+++.+..+. .+ |...+.+++|+|+|+++++++.|+.|++|
T Consensus 220 v~iwd~~~~~~~~~~~-----~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFR-----RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp EEEEETTTCCEEEEEE-----CTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred EEEEECCCCcEEEEEE-----cCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 99999 4688888772 13 67789999999999999999999999998
No 118
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.91 E-value=2.1e-22 Score=167.43 Aligned_cols=244 Identities=16% Similarity=0.256 Sum_probs=185.6
Q ss_pred CccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---
Q psy13998 30 TPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT--- 98 (319)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--- 98 (319)
++++.+++++..+..+..|+... +|...+.++++ +++++++++.|+.|++ |+..+......+.
T Consensus 140 ~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~v----wd~~~~~~~~~~~~h~ 213 (435)
T 1p22_A 140 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV----WDVNTGEMLNTLIHHC 213 (435)
T ss_dssp ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE----EESSSCCEEEEECCCC
T ss_pred EECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEE----EECCCCcEEEEEcCCC
Confidence 34678888888888877776543 45567777777 7889999999999999 9988776665443
Q ss_pred -CceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEE---EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEec
Q psy13998 99 -WPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFV---GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 173 (319)
Q Consensus 99 -~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~ 173 (319)
.+.+++++ ++.+++++.++.|.+||. ++... ..+ .++...+.++++ +++++++++.++.|.+||+
T Consensus 214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~ 283 (435)
T 1p22_A 214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVL------VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT 283 (435)
T ss_dssp SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEE------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEe------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence 45677775 458888899999999994 44332 223 445567778887 6788999999999999998
Q ss_pred CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEE
Q psy13998 174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVA 252 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (319)
... +.+..+ ..+...+.++++ ++.++++++.++.|++||. +++.+..+ .++...+.+++
T Consensus 284 ~~~------~~~~~~------~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~------~~h~~~v~~~~ 343 (435)
T 1p22_A 284 STC------EFVRTL------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL------EGHEELVRCIR 343 (435)
T ss_dssp TTC------CEEEEE------ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE------CCCSSCEEEEE
T ss_pred CcC------cEEEEE------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE------eCCcCcEEEEE
Confidence 743 444444 234455667777 4678999999999999996 57777777 55666678888
Q ss_pred EcCCCcEEEEeCCCCEEEEEcC-CCc---------eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 253 VDDQGYISVGDSGNNRIQIFTP-DGQ---------FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 253 ~~~~g~~~v~~~~~~~i~~~~~-~g~---------~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+ ++.++++++.++.|++||. .++ .+..+ ..|...+.++++ ++.++++++.|+.|++|
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iw 410 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL------VEHSGRVFRLQF--DEFQIVSSSHDDTILIW 410 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE------CCCSSCCCCEEE--CSSCEEECCSSSEEEEE
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec------cCCCCCeEEEEe--CCCEEEEEeCCCEEEEE
Confidence 7 6788999999999999994 232 55666 567788999999 67889999999999998
No 119
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.91 E-value=2e-21 Score=155.87 Aligned_cols=269 Identities=12% Similarity=0.130 Sum_probs=179.1
Q ss_pred cccccCCCccchhccccceeeeeccc-----CCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE-
Q psy13998 23 GIGQVGTTPRSQYLQKRRLQFKIGSR-----GSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA- 96 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 96 (319)
.+..+.+++....+........+..| ....++...|.+++++++|++|+++..++.|.+ |+..+......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~----~d~~~~~~~~~~ 82 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFK----INPETKEIKRPF 82 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEE----ECTTTCCEEEEE
T ss_pred ccceeeecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEE----EeCCCCcEEEEe
Confidence 45566677766554443222222221 112334567899999999999999998999999 87765443322
Q ss_pred ---ecCceeeEEcCCCcEEEEcCCC----CeEEEEcCCCcEEE-EecCCCccCCCCCCceeEEEeCCCeEEEEeCC----
Q psy13998 97 ---FTWPRGIAVGPDNSIVVADSSN----HRVQVFQSDGTFVG-KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---- 164 (319)
Q Consensus 97 ---~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~---- 164 (319)
...|.+++++++|++|++...+ +.|.+|+.++.... .+... .....+.+++++++|++|++...
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~~~~ 158 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL----STAYCIDDMVFDSKGGFYFTDFRGYST 158 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS----SSCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC----ccCCcccceEECCCCCEEEEecccccc
Confidence 2468899999999999988766 68999996654433 22211 12356899999999999998764
Q ss_pred --CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeC--CCCEEEEeCCCC
Q psy13998 165 --NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDV--NGRVITSFGSEG 239 (319)
Q Consensus 165 --~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~--~~~~~~~~~~~~ 239 (319)
.+.|..++.++.. +.. + ......+.+++++++|+ +|+++..++.|++|+. ++.....+....
T Consensus 159 ~~~~~l~~~~~~~~~------~~~-~------~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 159 NPLGGVYYVSPDFRT------VTP-I------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp BCCEEEEEECTTSCC------EEE-E------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred CCCceEEEEeCCCCE------EEE-e------ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 3567777766421 111 1 01123578899999986 7788877889999997 444332211000
Q ss_pred C-CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCC
Q psy13998 240 S-EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRE 312 (319)
Q Consensus 240 ~-~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~ 312 (319)
. .......|.+++++++|++|++...++.|.+|+++++.+..+.......++...|.++++++|++ +|+++..
T Consensus 226 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 226 PYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 0 00011357899999999999999888999999998888777743211112334789999999974 7776654
No 120
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.91 E-value=6.7e-21 Score=150.18 Aligned_cols=226 Identities=16% Similarity=0.258 Sum_probs=165.2
Q ss_pred cCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEcC-C
Q psy13998 54 CFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQS-D 127 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~ 127 (319)
++..+.+++|+++|+ +|+++..++.|.+ |+..+. ...+ ..|.+++++++|++|++...++.|.+|+. +
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~----~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWA----WSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEE----EETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEE----EECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 356789999999998 8889988999999 877654 3322 36789999999999999888889999996 7
Q ss_pred CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-----------------CCCEEEEEecCCceeeecCceeeeecc
Q psy13998 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------------NNHRVQIFDVNGRVFQSDGTFVGKFGS 190 (319)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~ 190 (319)
++......... ......|.+++++++|++|+++. ..+.|..++.++. +.. .
T Consensus 100 g~~~~~~~~~~--~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-------~~~-~-- 167 (296)
T 3e5z_A 100 GEWESIADSFE--GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-------LSA-P-- 167 (296)
T ss_dssp CCEEEEECEET--TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-------EEE-E--
T ss_pred CcEEEEeeccC--CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-------EEE-e--
Confidence 76544332111 11234678999999999999853 1357777776532 111 1
Q ss_pred cCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC--CCCE---EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC
Q psy13998 191 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV--NGRV---ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG 265 (319)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~ 265 (319)
......|.+++++|++++++++..++.|++|+. ++.. ...+ . .....|.+++++++|++|++.
T Consensus 168 ----~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-----~~~~~p~~i~~d~~G~l~v~~-- 235 (296)
T 3e5z_A 168 ----IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-----VEPGKTDGLRVDAGGLIWASA-- 235 (296)
T ss_dssp ----ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-----CSSSCCCSEEEBTTSCEEEEE--
T ss_pred ----ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-----CCCCCCCeEEECCCCCEEEEc--
Confidence 123456899999999988888888999999996 4554 2233 1 123468899999999999998
Q ss_pred CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEE-ccCCc-EEEEeCCCCeEE
Q psy13998 266 NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAV-MSNGN-ILVCDRENHRIQ 317 (319)
Q Consensus 266 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~-~~v~~~~~~~i~ 317 (319)
++.|.+|+++|+.+..+. .+.. |.+++| .++++ +|++. .++..+
T Consensus 236 ~~~v~~~~~~g~~~~~~~------~~~~-~~~~~f~~~d~~~L~v~t-~~~l~~ 281 (296)
T 3e5z_A 236 GDGVHVLTPDGDELGRVL------TPQT-TSNLCFGGPEGRTLYMTV-STEFWS 281 (296)
T ss_dssp TTEEEEECTTSCEEEEEE------CSSC-CCEEEEESTTSCEEEEEE-TTEEEE
T ss_pred CCeEEEECCCCCEEEEEE------CCCC-ceeEEEECCCCCEEEEEc-CCeEEE
Confidence 789999999999888773 3344 899999 57877 66655 444443
No 121
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.91 E-value=4.8e-22 Score=165.78 Aligned_cols=276 Identities=14% Similarity=0.235 Sum_probs=199.5
Q ss_pred hhccchhhhhhhhhh--cccccccCCCccchhccccceeeeecccCCCC--------CcCCCCcceEEcCCCcEEEEeCC
Q psy13998 6 EAKNINSCFLLQTLL--VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSS 75 (319)
Q Consensus 6 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~ 75 (319)
+.++..++.++..+. ...|.++.++ +.++.+++.+..+..|+... +|...+.+++++ ++.+++++.
T Consensus 142 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~ 217 (445)
T 2ovr_B 142 KVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR 217 (445)
T ss_dssp EEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC
Confidence 456666666665554 4566677765 56777777777777776543 355677788885 567889999
Q ss_pred CCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeE
Q psy13998 76 NHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYI 150 (319)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 150 (319)
|+.|++ |+..+......+ ..+.++++ +++.+++++.++.|++|| .+++.+..+ .++...+.++
T Consensus 218 dg~i~~----wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~ 285 (445)
T 2ovr_B 218 DATLRV----WDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL------QGHTNRVYSL 285 (445)
T ss_dssp TSEEEE----EESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE------CCCSSCEEEE
T ss_pred CCEEEE----EECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe------cCCCCceEEE
Confidence 999999 888766655533 34567777 677888888899999999 566777666 3455667788
Q ss_pred EEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CC
Q psy13998 151 AVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NG 229 (319)
Q Consensus 151 ~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~ 229 (319)
++ ++..+++++.++.|++||+... +.+..+ ..+...+.++.+ +++++++++.++.|++||. ++
T Consensus 286 ~~--~~~~l~~~~~d~~i~i~d~~~~------~~~~~~------~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 286 QF--DGIHVVSGSLDTSIRVWDVETG------NCIHTL------TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EE--CSSEEEEEETTSCEEEEETTTC------CEEEEE------CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred EE--CCCEEEEEeCCCeEEEEECCCC------CEEEEE------cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC
Confidence 77 6788999999999999998743 444444 233344555555 4678899999999999996 67
Q ss_pred CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEE
Q psy13998 230 RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILV 308 (319)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v 308 (319)
+.+..+... ..+...+.+++++ ++++++++.++.|++|+ .+++.+..+.... ...+...+++++++|++.+++
T Consensus 350 ~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 350 QCLQTLQGP---NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE-SGGSGGVVWRIRASNTKLVCA 423 (445)
T ss_dssp CEEEEECST---TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT-TGGGTCEEEEEEECSSEEEEE
T ss_pred cEEEEEccC---CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc-cCCCCceEEEEEecCCEEEEE
Confidence 777776321 1244567788885 57899999999999999 5677777662111 023556799999999999999
Q ss_pred EeCCCCe----EEeC
Q psy13998 309 CDRENHR----IQVF 319 (319)
Q Consensus 309 ~~~~~~~----i~v~ 319 (319)
+++.|+. |.+|
T Consensus 424 ~~~~dg~~~~~l~v~ 438 (445)
T 2ovr_B 424 VGSRNGTEETKLLVL 438 (445)
T ss_dssp EECSSSSSCCEEEEE
T ss_pred EcccCCCCccEEEEE
Confidence 9999997 7765
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=1.7e-21 Score=157.50 Aligned_cols=270 Identities=12% Similarity=0.075 Sum_probs=181.1
Q ss_pred cccccccCCCccchhccccceeeeecccCCCCCc------CCCCcceEEcCCCcEE-EEeCCCCeEEEecccccccccee
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGC------FTWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCV 93 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~g~~~-~~~~~~~~v~~~~~~~~~~~~~~ 93 (319)
...|.+++|+|++.+++.+..+. +.+|...++. ...+..+++.++++.+ ++++.++.|++ ||..++..
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i----Wd~~~~~~ 93 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHI----WDDVKKQD 93 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEE----EETTTTEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEE----EECCCCcE
Confidence 67899999999999998876553 3455443332 2356778888887765 66778899999 99887766
Q ss_pred eEEec---CceeeEEcCCCcEEEEcCCCCeEEEEcC-CC-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEE-eCCCCE
Q psy13998 94 FLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQS-DG-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS-DSNNHR 167 (319)
Q Consensus 94 ~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~ 167 (319)
...+. .+.+++++++. ++++ .++.|++|+. ++ +.+..+.. ....+++++ ..+.++ +..++.
T Consensus 94 ~~~~~~~~~v~~v~~~~~~-~~~~--~~~~i~i~d~~~~~~~~~~~~~---------~~~~~~~s~-~~la~~sg~~~g~ 160 (355)
T 3vu4_A 94 VSRIKVDAPVKDLFLSREF-IVVS--YGDVISVFKFGNPWKRITDDIR---------FGGVCEFSN-GLLVYSNEFNLGQ 160 (355)
T ss_dssp EEEEECSSCEEEEEECSSE-EEEE--ETTEEEEEESSTTCCBSSCCEE---------EEEEEEEET-TEEEEEESSCTTC
T ss_pred EEEEECCCceEEEEEcCCE-EEEE--EcCEEEEEECCCCceeeEEecc---------CCceEEEEc-cEEEEeCCCcCcE
Confidence 65443 55778887754 3333 2678999994 33 33322210 112345555 444444 688999
Q ss_pred EEEEecCCceeee--cCc-------e-eeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCe-EEEEeC-CCCEEEEe
Q psy13998 168 VQIFDVNGRVFQS--DGT-------F-VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR-VQIFDV-NGRVITSF 235 (319)
Q Consensus 168 i~~~~~~~~~~~~--~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~-i~~~~~-~~~~~~~~ 235 (319)
|++||+....... ... . +..+ ..|...+.+++++|+|+++++++.++. |++||. +++.+..+
T Consensus 161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~------~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 161 IHITKLQSSGSATTQDQGVQQKAILGKGVLI------KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp EEEEECCC------------------CCEEE------CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCccccccccccccccCcccEEE------EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 9999987531000 000 0 2222 456677899999999999999999998 999996 57777777
Q ss_pred CCCCCCcc-cccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-Cce--EEeecc---c------------CCCCCCCCCcc
Q psy13998 236 GSEGSEEG-QLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQF--LRAFGC---W------------GSGDGEFKGLE 296 (319)
Q Consensus 236 ~~~~~~~~-~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~--~~~~~~---~------------~~~~~~~~~~~ 296 (319)
. .+ +...+.+++|+|+|+++++++.|+.|++|+.. +.. ...+.. . ...........
T Consensus 235 ~-----~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 3vu4_A 235 R-----RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGC 309 (355)
T ss_dssp E-----CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCC
T ss_pred E-----cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCce
Confidence 2 13 55678999999999999999999999999953 211 111100 0 00001111236
Q ss_pred eEEEccCCcEEEEeCCCCeEEeC
Q psy13998 297 GVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 297 ~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.++|++||++++++..|+.+++|
T Consensus 310 ~~a~~~d~~~l~~~~~dg~~~~~ 332 (355)
T 3vu4_A 310 KIAWISESSLVVVWPHTRMIETF 332 (355)
T ss_dssp EEEESSSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEE
Confidence 68999999999999999999876
No 123
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.90 E-value=2.8e-23 Score=165.22 Aligned_cols=232 Identities=11% Similarity=0.022 Sum_probs=171.7
Q ss_pred cccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcC--CCcEEEEeCCCCeEEEecccccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHFDL 88 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~~~ 88 (319)
.+.|..++|+|++.++++++.+..+.+|+.. .+|...+.+++|++ +++++++++.|++|++ |+.
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i----Wd~ 88 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII----WRE 88 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE----ECC
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE----EEC
Confidence 6789999999999999999988877777532 35667899999986 4889999999999999 887
Q ss_pred ccce--eeE----EecCceeeEEcCC--CcEEEEcCCCCeEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEeCC----
Q psy13998 89 KTNC--VFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVSNT---- 155 (319)
Q Consensus 89 ~~~~--~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~---- 155 (319)
.+.. ... +-..+.+++|+|+ +.++++++.++.|++|+.... ........ .+|...+.+++++|+
T Consensus 89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN---NAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBT---TSSSSCBCCCEECCCCCC-
T ss_pred CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeee---ccccCCcceEEEccccCCc
Confidence 6542 222 2336789999997 778999999999999994332 21111111 345566778888886
Q ss_pred -------------CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC----cEEEEeCC
Q psy13998 156 -------------NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN----RVIVSDSN 218 (319)
Q Consensus 156 -------------g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~v~~~~ 218 (319)
++++++++.|+.|++||.+.... .+.+..+ ..|...+.+++++|++ .++++++.
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~l------~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---WKEEQKL------EAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSC---EEEEECC------BCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCc---cceeeec------ccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 46889999999999999863200 0122222 4456678899999986 78999999
Q ss_pred CCeEEEEeCCC----C-EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 219 NHRVQIFDVNG----R-VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 219 ~~~i~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
|+.|++|+.+. . ....+ ..+...+.+++|+|+|+++++++.|+.|++|+.
T Consensus 237 D~~v~iw~~~~~~~~~~~~~~~------~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNTWSPKLL------HKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp TCEEEEEECSSTTCCCCBCCEE------EECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred CCeEEEEEccCccccchhhhhh------hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 99999999643 1 11112 223456789999999999999999999999994
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.9e-22 Score=159.13 Aligned_cols=225 Identities=11% Similarity=0.055 Sum_probs=160.3
Q ss_pred cCCCccchhccccceeeeecccCCCCCcC------CCCcceEEcCCCcEEEEeCCCCeEEEeccc-----cccccceeeE
Q psy13998 27 VGTTPRSQYLQKRRLQFKIGSRGSEPGCF------TWPRGIAVGPDNSIVVADSSNHRVQVCFPH-----FDLKTNCVFL 95 (319)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~ 95 (319)
..+.+++.++++++.+..+..|+...+.. ..+..+.++|+ +++++.|++|++|+.+ |+..+...+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 34556788899999999988887766543 56788888887 8899999999994322 2333343233
Q ss_pred Ee-----cCceeeEEcC--CCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCE
Q psy13998 96 AF-----TWPRGIAVGP--DNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 167 (319)
Q Consensus 96 ~~-----~~~~~l~~~~--~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ 167 (319)
.+ ..+.+++++| +++++++++.++.|++|| .+++...... ..+...+.+++++|++.++++++.++.
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-----AKSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-----CCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----cCCCCceEEEEECCCCCEEEEEcCCCE
Confidence 22 3578899999 999999999999999999 5566644442 122345789999999999999999999
Q ss_pred EEEEecCCceeeecCcee-eeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccc
Q psy13998 168 VQIFDVNGRVFQSDGTFV-GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQL 245 (319)
Q Consensus 168 i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 245 (319)
|++||++.. +.+ ..+. ..|...+.+++++|++.++++++ ++.|++||.. ++....+... ..+.
T Consensus 194 i~iwd~~~~------~~~~~~~~-----~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~---~~~~ 258 (343)
T 3lrv_A 194 LDVYNLSSP------DQASSRFP-----VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY---TIPE 258 (343)
T ss_dssp EEEEESSCT------TSCCEECC-----CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC---BC--
T ss_pred EEEEECCCC------CCCccEEe-----ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc---cccc
Confidence 999999743 332 2331 12556789999999999988888 5599999964 3332222110 0011
Q ss_pred cCc--ceEEEcCCCcEEEEeCC-CCEEEEEcC
Q psy13998 246 KFP--RGVAVDDQGYISVGDSG-NNRIQIFTP 274 (319)
Q Consensus 246 ~~~--~~i~~~~~g~~~v~~~~-~~~i~~~~~ 274 (319)
... .+++|+|+|+++++++. ++.|++|+.
T Consensus 259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp ---CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 112 35999999999888777 999999985
No 125
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=2.8e-21 Score=154.79 Aligned_cols=237 Identities=16% Similarity=0.248 Sum_probs=162.2
Q ss_pred CCCcceEEcCCCc-EEEEeCCCCeEEEecccccccccee-eE---EecCcee-eEEcCCCcEEEEcCCC-C--eEEEEc-
Q psy13998 56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCV-FL---AFTWPRG-IAVGPDNSIVVADSSN-H--RVQVFQ- 125 (319)
Q Consensus 56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~-~~---~~~~~~~-l~~~~~g~~~~~~~~~-~--~i~~~~- 125 (319)
..+ +++++|+|+ +++++..++.|.+ |+..+... .. ....|.. ++++|+|+.+++...+ + .|.+||
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~----~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~ 115 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQ----IETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF 115 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEE----EECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEE----EECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence 456 999999998 6777777899999 88876554 33 3346677 9999999866665555 3 899999
Q ss_pred CCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCE-EEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998 126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHR-VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY 203 (319)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (319)
.+++.+..+.. ...+.+++++|+|+ +|+++..++. +.+|+++.. +........ .......|.+
T Consensus 116 ~~~~~~~~~~~-------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~-----g~~~~~~~~---~~~~~~~~~~ 180 (331)
T 3u4y_A 116 LKNKFISTIPI-------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD-----GVLFDTGQE---FISGGTRPFN 180 (331)
T ss_dssp TTTEEEEEEEC-------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT-----CCEEEEEEE---EECSSSSEEE
T ss_pred CCCCeEEEEEC-------CCCccceEECCCCCEEEEEecCCCceEEEEEECCC-----CcEeecCCc---cccCCCCccc
Confidence 45666655532 24578999999996 7777777677 999988642 111111000 0112345789
Q ss_pred EEEcCCCc-EEEEeCCCCeEEEEeC-CCCE---EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC-C
Q psy13998 204 IAVSNTNR-VIVSDSNNHRVQIFDV-NGRV---ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD-G 276 (319)
Q Consensus 204 ~~~~~~g~-~~v~~~~~~~i~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~-g 276 (319)
++++|+|+ +|+++..++.|.+||. +++. +..+. ....|.+++++|+|+ +|++...++.|.+|+.. +
T Consensus 181 ~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 181 ITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred eEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 99999996 7788888999999996 4555 55542 124678999999998 66777778899999965 5
Q ss_pred ce--EEeecccC-CCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 277 QF--LRAFGCWG-SGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 277 ~~--~~~~~~~~-~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
+. +..+...- ..........+++|+|||+ +|+++..++.|++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 300 (331)
T 3u4y_A 254 TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVF 300 (331)
T ss_dssp EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence 44 22221100 0011112235689999998 66788888899887
No 126
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=2.8e-20 Score=150.20 Aligned_cols=238 Identities=14% Similarity=0.178 Sum_probs=170.1
Q ss_pred CCCcceEEcCCCc-EEEEeCC------CCeEEEeccccccccceeeEEe---cCceeeEEcCCCc-EEEEcCCCCeEEEE
Q psy13998 56 TWPRGIAVGPDNS-IVVADSS------NHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNS-IVVADSSNHRVQVF 124 (319)
Q Consensus 56 ~~~~~v~~~~~g~-~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~-~~~~~~~~~~i~~~ 124 (319)
..|.+++++|+|+ +|++... ++.|.+ |+..+.+....+ ..|.+++++++|+ +|+++..++.|.+|
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYR----LDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEE----ECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEE----EcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 4678999999987 5555544 678999 888776655543 3688999999987 78888888999999
Q ss_pred c-CCCcEEEEecCCCccC---CCCCCceeEEEeCCCe-EEEEe-CCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998 125 Q-SDGTFVGKFGSMGNKA---GQLEHPHYIAVSNTNR-VIVSD-SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198 (319)
Q Consensus 125 ~-~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~g~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (319)
| .+++.+..+....... .....|.+++++|+|+ +|+++ ..++.|.+||..+. +.+..+. ...
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~------~~~~~~~------~~~ 184 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI------KLKTAIQ------NTG 184 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT------EEEEEEC------CCC
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC------ceEEEec------CCC
Confidence 9 5677766664321100 0112378899999886 55665 45788999998743 3444332 122
Q ss_pred CCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-C
Q psy13998 199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-D 275 (319)
Q Consensus 199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~ 275 (319)
..|.+++++|+|+.+++...++.|.+||. +++....+.... .++...+.+++++|+|+ +|+++..++.|.+||. +
T Consensus 185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD--DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC--SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC--CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 34788999999987766677899999996 455555543211 12334577899999986 7778777899999995 6
Q ss_pred CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
++.+..+.. ..+.+++++|+|+ +|+++..++.|.+|
T Consensus 263 ~~~~~~~~~--------~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 263 GNILAKVAA--------PESLAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp CCEEEEEEC--------SSCCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred CcEEEEEEc--------CCCceEEECCCCCEEEEEECCCCeEEEE
Confidence 777776631 2357799999998 88888889999876
No 127
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.90 E-value=4.1e-22 Score=160.46 Aligned_cols=242 Identities=8% Similarity=0.079 Sum_probs=179.2
Q ss_pred cccccccCCCccchhccccceeeeecccCCCC------------CcCCCCcceEEcC--CCcEEEEeCCCCeEEEecccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEP------------GCFTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHF 86 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~ 86 (319)
...|.+++|+|++.+++++..+..+..|+... +|...+.+++|+| +++++++++.|+.|++ |
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v----w 86 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL----W 86 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE----E
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE----E
Confidence 57799999999999999998887777775432 4567889999999 5899999999999999 8
Q ss_pred ccccc---------eeeEE----ecCceeeEEcCC--CcEEEEcCCCCeEEEEc-CCCcEEEEec-------CCCccCCC
Q psy13998 87 DLKTN---------CVFLA----FTWPRGIAVGPD--NSIVVADSSNHRVQVFQ-SDGTFVGKFG-------SMGNKAGQ 143 (319)
Q Consensus 87 ~~~~~---------~~~~~----~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~-~~~~~~~~~~-------~~~~~~~~ 143 (319)
+..+. ..... ...+.+++++|+ ++++++++.++.|++|| .+++.+..+. .......+
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 87654 22222 236789999999 89999999999999999 4443221111 11111245
Q ss_pred CCCceeEEEeCC---CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC----cEEEEe
Q psy13998 144 LEHPHYIAVSNT---NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN----RVIVSD 216 (319)
Q Consensus 144 ~~~~~~l~~~~~---g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~v~~ 216 (319)
...+.+++++|+ +.++++++.++.+..|+...... ..+..+ ..+...+.+++++|++ ++++++
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~------~~h~~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL----HVAAKL------PGHKSLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE----EEEEEC------CCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce----eeeeec------CCCCcceeEEEECCCCCCcceEEEEE
Confidence 567899999997 88899998898887776653211 112222 3455678899999998 899999
Q ss_pred CCCCeEEEEeCCC-----------------------------------------------CEEEEeCCCCCCcccccCcc
Q psy13998 217 SNNHRVQIFDVNG-----------------------------------------------RVITSFGSEGSEEGQLKFPR 249 (319)
Q Consensus 217 ~~~~~i~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~ 249 (319)
+.++.|++||... ..+..+ .++...+.
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~ 310 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH------DDHNGEVW 310 (351)
T ss_dssp ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE------CTTSSCEE
T ss_pred cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE------ecccccEE
Confidence 9999999999643 222223 34556789
Q ss_pred eEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998 250 GVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF 282 (319)
Q Consensus 250 ~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~ 282 (319)
+++++|+++++++++.|+.|++|+. .++.+..+
T Consensus 311 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 311 SVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 9999999999999999999999994 45444443
No 128
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.6e-21 Score=173.64 Aligned_cols=246 Identities=10% Similarity=0.064 Sum_probs=174.8
Q ss_pred CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCcEEEEcCCCCeEEEEc-CCC
Q psy13998 53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVVADSSNHRVQVFQ-SDG 128 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~ 128 (319)
||...|.+++|+|+|+++++++.|+.|++ |+..+......+ ..+.+++|+| |+++++++.++.|++|| .++
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~l----w~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHI----YGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEE----ECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEE----EeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 55678999999999999999999999999 887655544333 3578999999 88888999999999999 567
Q ss_pred cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc-CCcCCCCCCceeEEEc
Q psy13998 129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM-GNKAGQLEHPHYIAVS 207 (319)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 207 (319)
+.+..+. +...+.+++++|+++++++++.++.|++||+++..... ..+...... .....+...+.+++++
T Consensus 90 ~~~~~~~-------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~--~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 90 KVLTTVF-------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS--FKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp SEEEEEE-------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE--EEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred cEEEEEc-------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc--ceeccccccccccccCCCCeEEEEEc
Confidence 7776663 22567999999999999999999999999998643210 000000000 1113456678899999
Q ss_pred CCC-cEEEEeCCCCeEEEEeCC-CCEEEEeCCCC------------CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998 208 NTN-RVIVSDSNNHRVQIFDVN-GRVITSFGSEG------------SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT 273 (319)
Q Consensus 208 ~~g-~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~ 273 (319)
|++ .++++++.++.| +||.. ++.+..+.... ....+...+.+++|+|+|.++++++.|+.|++||
T Consensus 161 p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 161 PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 964 788889999999 99964 45555553210 0011235688999999999999999999999999
Q ss_pred C-CCceEEe--ecccCCC-------C---CCCCCcceEEEc----cCC-cEEEEeCCC
Q psy13998 274 P-DGQFLRA--FGCWGSG-------D---GEFKGLEGVAVM----SNG-NILVCDREN 313 (319)
Q Consensus 274 ~-~g~~~~~--~~~~~~~-------~---~~~~~~~~l~~~----~~g-~~~v~~~~~ 313 (319)
. +|+.+.. +...... . .+...+.+++|+ |++ .++++++.+
T Consensus 240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 5 6776543 2100000 0 123468899994 554 577777554
No 129
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.90 E-value=1.8e-20 Score=145.46 Aligned_cols=222 Identities=11% Similarity=0.124 Sum_probs=172.1
Q ss_pred CCCcEEEEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCc
Q psy13998 65 PDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGN 139 (319)
Q Consensus 65 ~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 139 (319)
..++++++++.++.|.+ |+.++++.+..+. .+++++++|+|+++++ .++.|+.||++|+.+..+...
T Consensus 3 ~~~~~lv~~~~~~~v~~----~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~~G~~~W~~~~~-- 74 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAI----INKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITRDGRELWNIAAP-- 74 (276)
T ss_dssp CCCEEEEECTTCSEEEE----EETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECTTSCEEEEEECC--
T ss_pred CCCcEEEeeCCCCEEEE----EECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECCCCCEEEEEcCC--
Confidence 34689999999999999 9987777766554 4788999999999884 467899999999999888532
Q ss_pred cCCCCCCceeEEEeCCCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC
Q psy13998 140 KAGQLEHPHYIAVSNTNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN 218 (319)
Q Consensus 140 ~~~~~~~~~~l~~~~~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 218 (319)
....+.++.+.++|+++++.+. ++++..++.+| +.+..+............+..+++.++|+++++...
T Consensus 75 ---~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-------k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~ 144 (276)
T 3no2_A 75 ---AGCEMQTARILPDGNALVAWCGHPSTILEVNMKG-------EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA 144 (276)
T ss_dssp ---TTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS-------CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred ---CCccccccEECCCCCEEEEecCCCCEEEEEeCCC-------CEEEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence 1134577888999999999877 78888888766 444444322211222345667888999999999999
Q ss_pred CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcce
Q psy13998 219 NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEG 297 (319)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 297 (319)
++.|+.||++|+.+.++... ..|.++...++|++++++..+++|..+|++ |+.+..+.........+..|.+
T Consensus 145 ~~~v~~~d~~G~~~w~~~~~-------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~ 217 (276)
T 3no2_A 145 TSEVREIAPNGQLLNSVKLS-------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ 217 (276)
T ss_dssp TTEEEEECTTSCEEEEEECS-------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred CCEEEEECCCCCEEEEEECC-------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence 99999999999998887421 357788889999999999988999999987 9999888643222224566899
Q ss_pred EEEccCCcEEEEeC
Q psy13998 298 VAVMSNGNILVCDR 311 (319)
Q Consensus 298 l~~~~~g~~~v~~~ 311 (319)
++..++|++|+++.
T Consensus 218 ~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 218 LFPLQNGGLYICNW 231 (276)
T ss_dssp EEECTTSCEEEEEE
T ss_pred ceEcCCCCEEEEec
Confidence 99999999999984
No 130
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.90 E-value=4.8e-21 Score=159.74 Aligned_cols=249 Identities=14% Similarity=0.250 Sum_probs=189.2
Q ss_pred CCCccchhccccceeeeecccCCC--------CCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-
Q psy13998 28 GTTPRSQYLQKRRLQFKIGSRGSE--------PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT- 98 (319)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~- 98 (319)
++++++.++++++.+..+..|+.. .+|...+.+++++ ++++++++.|+.|++ |+..+......+.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v----wd~~~~~~~~~~~~ 197 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV----WNAETGECIHTLYG 197 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE----EETTTTEEEEEECC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE----EECCcCcEEEEECC
Confidence 356678889988888888777654 3456778888887 678999999999999 9888776665443
Q ss_pred ---CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecC
Q psy13998 99 ---WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 174 (319)
Q Consensus 99 ---~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~ 174 (319)
.+.+++++ ++.+++++.++.|.+|| .+++.+..+ .++...+.++++ +++++++++.++.|.+||+.
T Consensus 198 h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~------~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~ 267 (445)
T 2ovr_B 198 HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL------MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE 267 (445)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE------ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG
T ss_pred CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE------cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC
Confidence 45677774 56788889999999999 567777766 345567788887 67888999999999999987
Q ss_pred CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEE
Q psy13998 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAV 253 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (319)
.. +.+..+ ..+...+.++++ ++..+++++.++.|++||. +++.+..+ ..+...+.++.+
T Consensus 268 ~~------~~~~~~------~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~v~~~~~ 327 (445)
T 2ovr_B 268 TE------TCLHTL------QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL------TGHQSLTSGMEL 327 (445)
T ss_dssp GT------EEEEEE------CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE------CCCCSCEEEEEE
T ss_pred CC------cEeEEe------cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE------cCCcccEEEEEE
Confidence 42 444444 234455677777 6788899999999999995 67777776 444445566665
Q ss_pred cCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 254 DDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 254 ~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+++++++++.++.|++||. +++.+..+... ..+...+.+++++ ++++++++.|+.|++|
T Consensus 328 --~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 328 --KDNILVSGNADSTVKIWDIKTGQCLQTLQGP---NKHQSAVTCLQFN--KNFVITSSDDGTVKLW 387 (445)
T ss_dssp --ETTEEEEEETTSCEEEEETTTCCEEEEECST---TSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred --eCCEEEEEeCCCeEEEEECCCCcEEEEEccC---CCCCCCEEEEEEC--CCEEEEEeCCCeEEEE
Confidence 4678999999999999994 67777777321 1256678888885 5799999999999998
No 131
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.8e-22 Score=162.09 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=176.0
Q ss_pred cccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcCC--CcEEEEeCCCCeEEEecccccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGPD--NSIVVADSSNHRVQVCFPHFDL 88 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~--g~~~~~~~~~~~v~~~~~~~~~ 88 (319)
...|.+++|+|++.+++++..+..+.+|... .+|...+.+++|+++ ++++++++.|+.|++ |+.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i----wd~ 86 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI----WKE 86 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE----EEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE----EEc
Confidence 6789999999999999998877776666532 356678899999977 899999999999999 888
Q ss_pred ccce--eeEE----ecCceeeEEcCC--CcEEEEcCCCCeEEEEcCC-Cc--EEEEecCCCccCCCCCCceeEEEeC---
Q psy13998 89 KTNC--VFLA----FTWPRGIAVGPD--NSIVVADSSNHRVQVFQSD-GT--FVGKFGSMGNKAGQLEHPHYIAVSN--- 154 (319)
Q Consensus 89 ~~~~--~~~~----~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~--- 154 (319)
.+.. .... ...+.+++++|+ ++++++++.++.|++||.. +. ....+ ..+...+.+++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII------DAHAIGVNSASWAPATI 160 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE------ECCTTCEEEEEECCCC-
T ss_pred CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe------cCCCCceEEEEEcCccc
Confidence 7664 3332 236789999999 8899999999999999943 32 22222 34556789999999
Q ss_pred ----------CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC---CcEEEEeCCCCe
Q psy13998 155 ----------TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHR 221 (319)
Q Consensus 155 ----------~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~ 221 (319)
++.++++++.++.|++||+...... ......+ ..+...+.+++++|+ +.++++++.++.
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~------~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTL------EGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTE--EEEEEEE------CCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEE------ecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 6899999999999999998642100 0122222 345567889999999 899999999999
Q ss_pred EEEEeCCCC----EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 222 VQIFDVNGR----VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 222 i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
|++|+.... ....... ..+...+.+++|+|+|+++++++.++.|++|+.
T Consensus 233 i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLLKE----EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp EEEEEESSTTSCCEEEESSS----SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred EEEEeCCCCCccceeeeecc----ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 999996432 2222211 224456789999999999999889999999994
No 132
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=99.89 E-value=4.6e-21 Score=157.75 Aligned_cols=245 Identities=15% Similarity=0.190 Sum_probs=174.1
Q ss_pred CcCCCCcceEEcCC---CcEEEEeCCCCeEEEeccccccccceeeE---EecCceeeEEcCCCcEEEEcCCC----CeEE
Q psy13998 53 GCFTWPRGIAVGPD---NSIVVADSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNSIVVADSSN----HRVQ 122 (319)
Q Consensus 53 ~~~~~~~~v~~~~~---g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~~~~----~~i~ 122 (319)
+.+..|.+|+++++ |++|+++.. +.|++ ++..+..... .+..|.+++++++|++|+++..+ ..+.
T Consensus 136 ~~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~----id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~ 210 (433)
T 4hw6_A 136 GAFDNIWRMMFDPNSNYDDLYWVGQR-DAFRH----VDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIY 210 (433)
T ss_dssp CCCSCCCEEEECTTTTTCEEEEECBT-SCEEE----EETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEE
T ss_pred cccCCCceEEEccccCCCEEEEEeCC-CCEEE----EECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEE
Confidence 36889999999985 889999877 89999 7775444333 34579999999999999998643 2355
Q ss_pred EEcCCCcEE--EEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998 123 VFQSDGTFV--GKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE 199 (319)
Q Consensus 123 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (319)
.++..+... ..+ .....|.++++++ +|++|++...+++|++++.++. .....+... ....
T Consensus 211 ~~~~~~~~~~~~~~-------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g------~~~~~~~~~----~~~~ 273 (433)
T 4hw6_A 211 LFTRASGFTERLSL-------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG------TLTEEEVMM----DTKG 273 (433)
T ss_dssp EECGGGTTCCEEEE-------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC------CEEEEEEEC----SCCS
T ss_pred EEECCCCeeccccc-------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC------eEEEEEecc----CCCC
Confidence 555333211 111 1346789999999 8999999999999999998732 221111111 1123
Q ss_pred CceeEEEcCCCc-EEEEeCCCCeEEEEeCCC---CE---EEEeC---CCCC-----CcccccCcceEEE---------cC
Q psy13998 200 HPHYIAVSNTNR-VIVSDSNNHRVQIFDVNG---RV---ITSFG---SEGS-----EEGQLKFPRGVAV---------DD 255 (319)
Q Consensus 200 ~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~---~~---~~~~~---~~~~-----~~~~~~~~~~i~~---------~~ 255 (319)
.+.+++++|+++ +|+++..+++|++++.++ .. ....+ ..+. ....+..|.++++ ++
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence 456799999996 999999999999988652 11 11111 1111 1235678999999 88
Q ss_pred CCcEEEEeCCCCEEEEEcCCCceEEeecccC-----------CCCCCCCCcceEEEc-cCCcEEEEeCCCCeEEeC
Q psy13998 256 QGYISVGDSGNNRIQIFTPDGQFLRAFGCWG-----------SGDGEFKGLEGVAVM-SNGNILVCDRENHRIQVF 319 (319)
Q Consensus 256 ~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~l~~~-~~g~~~v~~~~~~~i~v~ 319 (319)
+|++|+++..+++|++++++|......+... .....+..|.+|+++ ++|.+|+++..+++|+.+
T Consensus 354 ~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp CEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 8999999999999999999996655544311 112356789999999 789999999999999863
No 133
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=3.1e-20 Score=152.22 Aligned_cols=215 Identities=19% Similarity=0.334 Sum_probs=161.3
Q ss_pred CcEEEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCccC
Q psy13998 67 NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA 141 (319)
Q Consensus 67 g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~ 141 (319)
+.++++++.++.|++ |+..+......+ ..+.+++++|+++ +++++..++.|++|| .+++.+..+..
T Consensus 2 ~~l~vs~~~d~~v~v----~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~----- 72 (391)
T 1l0q_A 2 TFAYIANSESDNISV----IDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA----- 72 (391)
T ss_dssp EEEEEEETTTTEEEE----EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-----
T ss_pred CEEEEEcCCCCEEEE----EECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-----
Confidence 357889999999999 888776665533 3678999999997 557777899999999 56777666632
Q ss_pred CCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCC
Q psy13998 142 GQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNN 219 (319)
Q Consensus 142 ~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~ 219 (319)
+ ..+.+++++|+++ +++++..++.|.+||+.+. +.+..+. ....+.+++++|+++ +++++..+
T Consensus 73 -~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~------~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 73 -G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN------TVAGTVK-------TGKSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp -S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEE-------CSSSEEEEEECTTSSEEEEEETTT
T ss_pred -C-CCccceEECCCCCEEEEEECCCCEEEEEECCCC------eEEEEEe-------CCCCcceEEECCCCCEEEEEeCCC
Confidence 1 3789999999886 5567778899999999853 3333331 123578899999997 55888889
Q ss_pred CeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcc
Q psy13998 220 HRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLE 296 (319)
Q Consensus 220 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 296 (319)
+.|++||. +++.+..+. . ...+..++++|+|+ +|+++..++.|++||. +++.+..+ .+...+.
T Consensus 138 ~~v~~~d~~~~~~~~~~~------~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-------~~~~~~~ 203 (391)
T 1l0q_A 138 KTVSVINTVTKAVINTVS------V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-------KVEAAPS 203 (391)
T ss_dssp TEEEEEETTTTEEEEEEE------C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-------ECSSEEE
T ss_pred CEEEEEECCCCcEEEEEe------c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE-------ecCCCcc
Confidence 99999996 455555542 1 23578999999986 5578889999999995 45555555 2345789
Q ss_pred eEEEccCCcEEEEeC---CCCeEEeC
Q psy13998 297 GVAVMSNGNILVCDR---ENHRIQVF 319 (319)
Q Consensus 297 ~l~~~~~g~~~v~~~---~~~~i~v~ 319 (319)
+++++|+|+++++++ .++.|++|
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEE
Confidence 999999998555554 68888887
No 134
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.89 E-value=2.4e-20 Score=148.26 Aligned_cols=237 Identities=19% Similarity=0.296 Sum_probs=169.2
Q ss_pred CcCCCCcceEEcCCCcEEEE-------eCCCCeEEEeccccccccceeeE--------EecCceeeEEcCC-CcEEEEcC
Q psy13998 53 GCFTWPRGIAVGPDNSIVVA-------DSSNHRVQVCFPHFDLKTNCVFL--------AFTWPRGIAVGPD-NSIVVADS 116 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~-g~~~~~~~ 116 (319)
..+..|.+++++++|++|++ +..++.|.+ |+..+..... ....|.+++++++ |++|++..
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~----~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~ 90 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILR----IDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM 90 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEE----ECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEE----EeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC
Confidence 34678999999999999998 667789999 7765443321 2246889999999 89999876
Q ss_pred CCCeEEEEcCCCcEEEE-ecCCCccCCCCCCceeEEEeCCCeEEEEeCCC---------------CEEEEEecCCceeee
Q psy13998 117 SNHRVQVFQSDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN---------------HRVQIFDVNGRVFQS 180 (319)
Q Consensus 117 ~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~---------------~~i~~~~~~~~~~~~ 180 (319)
.+ .|.+|+.+++.... .... .......|.+++++++|++|++...+ +.|..++.++.
T Consensus 91 ~~-~l~~~d~~g~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~---- 163 (314)
T 1pjx_A 91 RL-GLLVVQTDGTFEEIAKKDS--EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ---- 163 (314)
T ss_dssp TT-EEEEEETTSCEEECCSBCT--TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC----
T ss_pred CC-CEEEEeCCCCEEEEEeccC--CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCC----
Confidence 44 79999966665433 2111 01123468899999999999998765 57888876542
Q ss_pred cCceeeeecccCCcCCCCCCceeEEEc----CCC-cEEEEeCCCCeEEEEeCC--CCEEE--EeCCCCCCcccc-cCcce
Q psy13998 181 DGTFVGKFGSMGNKAGQLEHPHYIAVS----NTN-RVIVSDSNNHRVQIFDVN--GRVIT--SFGSEGSEEGQL-KFPRG 250 (319)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g-~~~v~~~~~~~i~~~~~~--~~~~~--~~~~~~~~~~~~-~~~~~ 250 (319)
+.... .....|.+++++ +++ .+|+++..++.|++|+.+ +.... .+... ..+. ..|.+
T Consensus 164 ---~~~~~-------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~---~~~~~~~p~~ 230 (314)
T 1pjx_A 164 ---MIQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI---PGTHEGGADG 230 (314)
T ss_dssp ---EEEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC---CCCSSCEEEE
T ss_pred ---EEEec-------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC---CCCCCCCCCc
Confidence 11111 122457889999 998 578888888999999953 43211 11000 1122 45889
Q ss_pred EEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 251 VAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 251 i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
++++++|++|++...++.|.+|+++ |+.+..+. .+...|.+++++++|+ +|+++..++.|..|
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE------CSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe------CCCCCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence 9999999999999888999999987 77766662 3346799999999998 89998887777654
No 135
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=6.8e-21 Score=148.30 Aligned_cols=189 Identities=12% Similarity=0.068 Sum_probs=129.2
Q ss_pred CCCcEEEEcC--CCCeEEEEc--CCCcEEEEecCCCccCCCCCCceeEEEeC---CCeEEEEeCCCCEEEEEecCCceee
Q psy13998 107 PDNSIVVADS--SNHRVQVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSN---TNRVIVSDSNNHRVQIFDVNGRVFQ 179 (319)
Q Consensus 107 ~~g~~~~~~~--~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~g~~~~~~~~~~~i~~~~~~~~~~~ 179 (319)
++++++.+.. .++.|++|+ ++|+.+... ..+...+..++|++ ++.++++++.|++|++||+.+
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~------~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T---- 212 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ------FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT---- 212 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE------EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT----
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeee------ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC----
Confidence 4677776633 688999999 567776655 34445567788887 679999999999999999984
Q ss_pred ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEE------------EeCCCCeEEEEeCC-CCEEEEeCCCCCCccccc
Q psy13998 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV------------SDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLK 246 (319)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v------------~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 246 (319)
|+.+..+... ..+.....+++|+|+|.+++ +++.++.|++||+. ++.+..+... ...++..
T Consensus 213 --Gk~l~tL~g~---~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-~p~Gh~~ 286 (356)
T 2w18_A 213 --GQLLKKMHID---DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC-LPPGQAG 286 (356)
T ss_dssp --CCEEEEEECC---C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC-CCTTCCC
T ss_pred --CcEEEEEcCC---CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee-ccCCCcc
Confidence 3555555311 11223456678999998764 45678899999975 4444332100 0012221
Q ss_pred CcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcc-eEEEccCCcEEEEeCCCCeEEeC
Q psy13998 247 FPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLE-GVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 247 ~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.. +..+.++.++++++.|++|++|| .+|+.+.++ .+|...+. .++|+|||+++++++.|++|++|
T Consensus 287 ~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL------~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 287 RF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALL------PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp CE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEEE------CCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred ee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEEe------cCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 22 23333377899999999999999 578888888 56666555 58999999999999999999998
No 136
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.89 E-value=1.8e-21 Score=159.53 Aligned_cols=239 Identities=8% Similarity=0.063 Sum_probs=155.2
Q ss_pred EEcCCCcEEEEeCCCCeEEEeccccccccceeeE---------EecCceeeEEcC--------CCcEEEEcCCCCeEEEE
Q psy13998 62 AVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL---------AFTWPRGIAVGP--------DNSIVVADSSNHRVQVF 124 (319)
Q Consensus 62 ~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~--------~g~~~~~~~~~~~i~~~ 124 (319)
.+.++++++++++.|++|++ |+..+..... |...+.+++|+| +++++++++.|++|++|
T Consensus 96 ~~~~~~~~las~~~d~~v~l----w~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRL----IITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEE----EEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEE----EECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 33446678999999999999 8877654432 334678999987 78899999999999999
Q ss_pred c-CCCcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCc--------eeeeec-----
Q psy13998 125 Q-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGT--------FVGKFG----- 189 (319)
Q Consensus 125 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~----- 189 (319)
| .++..+... ..+...+.+++|+|++ +++++++.++.|++||+.......... ......
T Consensus 172 d~~~~~~~~~~------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 172 RLTDEGPILAG------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEETTEEEEEE------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred ECCCCceeeee------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9 455554444 3445678899999977 578899999999999987532111000 000000
Q ss_pred ccCCcCCCCCCceeEEEc-CCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCC------------CcccccCcceEEEcC
Q psy13998 190 SMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGS------------EEGQLKFPRGVAVDD 255 (319)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~i~~~~ 255 (319)
.......+.....++.+. ++++.+++++.++.+++||.. +.....+..... ............+.+
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence 000112344556677776 789999999999999999964 222222210000 000111223334444
Q ss_pred --CCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998 256 --QGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI 316 (319)
Q Consensus 256 --~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i 316 (319)
++.++++++.++.|++||. .++.+... ..+...+.+++|+|||+++++++.++.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~------~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIP------IQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEE------EECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEe------cCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 3456777888999999994 56655554 3456689999999999999999888764
No 137
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.89 E-value=1.8e-21 Score=160.99 Aligned_cols=240 Identities=12% Similarity=0.135 Sum_probs=180.9
Q ss_pred hhhhccchhhhhhhhhh----cccccccCCCccchhccccceeeeecccCCCCC--------cCCCCcceEEcCCCcEEE
Q psy13998 4 PSEAKNINSCFLLQTLL----VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPG--------CFTWPRGIAVGPDNSIVV 71 (319)
Q Consensus 4 ~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~ 71 (319)
+.+++|..++.++..+. ...|.+++|+|++.++++++.+..+.+|+...+ |...+.+++ .++++++
T Consensus 126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s--~~~~~l~ 203 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILS 203 (420)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--EETTEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEe--eCCCEEE
Confidence 34678888887776654 346999999999999999999988888876544 334455554 4678999
Q ss_pred EeCCCCeEEEeccccccccceee-E----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcE----EEEecCCCccC
Q psy13998 72 ADSSNHRVQVCFPHFDLKTNCVF-L----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTF----VGKFGSMGNKA 141 (319)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~-~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~ 141 (319)
+++.++.+++ |+....... . +...+..+.+.++++.+++++.++.+.+|+. .++. +... .
T Consensus 204 sgs~d~~i~~----~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~------~ 273 (420)
T 4gga_A 204 SGSRSGHIHH----HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF------T 273 (420)
T ss_dssp EEETTSEEEE----EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE------C
T ss_pred EEeCCCceeE----eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeee------c
Confidence 9999999999 776543322 2 3346788999999999999999999999993 3331 1222 3
Q ss_pred CCCCCceeEEEeCCC-eEEEE--eCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe--
Q psy13998 142 GQLEHPHYIAVSNTN-RVIVS--DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD-- 216 (319)
Q Consensus 142 ~~~~~~~~l~~~~~g-~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-- 216 (319)
.+...+.+++++|.+ .++++ ++.|+.|++||+... +....+. ....+..+.++++++.++++
T Consensus 274 ~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~------~~~~~~~-------~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVD-------AHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT------EEEEEEE-------CSSCEEEEEEETTTTEEEEEEC
T ss_pred ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc------ccceeec-------cccceeeeeecCCCCeEEEEEe
Confidence 455678899999854 55554 457899999998753 3333332 22346778889888766654
Q ss_pred CCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 217 SNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 217 ~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
..++.|++||. +++.+..+ .+|...+.+++|+|+|.++++++.|++|++|+.
T Consensus 341 ~~d~~I~iwd~~~~~~v~~l------~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKVAEL------KGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp TTTCCEEEEETTTCCEEEEE------CCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cCCCEEEEEECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 36899999995 67888888 677788999999999999999999999999994
No 138
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.89 E-value=2e-21 Score=161.20 Aligned_cols=229 Identities=10% Similarity=0.165 Sum_probs=173.7
Q ss_pred cccccccCCCcc-chhccccceeeeecccCCC------------------CCcCCCCcceEEcCCCc-EEEEeCCCCeEE
Q psy13998 21 VSGIGQVGTTPR-SQYLQKRRLQFKIGSRGSE------------------PGCFTWPRGIAVGPDNS-IVVADSSNHRVQ 80 (319)
Q Consensus 21 ~~~i~~~~~~~~-~~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~v~~~~~g~-~~~~~~~~~~v~ 80 (319)
...|..+.++|+ +.+++++..+..+..|... .+|-..+.+|+|+|+++ ++++++.++.|+
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 567899999996 6788877666555444322 24556789999999988 999999999999
Q ss_pred Eecccccccccee-------eE----EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCC-C---cEEEEecCCCccCCCC
Q psy13998 81 VCFPHFDLKTNCV-------FL----AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSD-G---TFVGKFGSMGNKAGQL 144 (319)
Q Consensus 81 ~~~~~~~~~~~~~-------~~----~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~-~---~~~~~~~~~~~~~~~~ 144 (319)
+ |++.+... .. +...+.+++++| ++.++++++.++.|++||.. + +.+..+ ..+.
T Consensus 208 v----wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~------~~~~ 277 (430)
T 2xyi_A 208 L----WDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV------DAHT 277 (430)
T ss_dssp E----EETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE------ECCS
T ss_pred E----EeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe------ecCC
Confidence 9 77765211 11 233578999999 56799999999999999943 3 333333 3455
Q ss_pred CCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeE
Q psy13998 145 EHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRV 222 (319)
Q Consensus 145 ~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i 222 (319)
..+.+++++|++. ++++++.++.|.+||++.. ...+..+ ..+...+.+++++|++ .++++++.++.|
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~-----~~~~~~~------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNL-----KLKLHSF------ESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-----TSCSEEE------ECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-----CCCeEEe------ecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 6789999999875 7889999999999998742 1233333 2345678899999988 578899899999
Q ss_pred EEEeCCC---------------CEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCC
Q psy13998 223 QIFDVNG---------------RVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDG 276 (319)
Q Consensus 223 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g 276 (319)
++||... ..+... .++...+.+++++|++. ++++++.++.|++|+...
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIH------GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEEC------CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEEeCCCCccccCccccccCCcceEEEc------CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 9999643 455554 45666799999999998 999999999999999654
No 139
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.2e-20 Score=153.82 Aligned_cols=244 Identities=17% Similarity=0.231 Sum_probs=175.2
Q ss_pred CcCCCCcceEEcC--CCcEEEEeCCCCeEEEeccccccccceeeE---EecCceeeEEcCCCc-EEEEcCCCC----eEE
Q psy13998 53 GCFTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNS-IVVADSSNH----RVQ 122 (319)
Q Consensus 53 ~~~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~-~~~~~~~~~----~i~ 122 (319)
+.+..|.+|+++| ++++|+++.. +.|++ +++.+..... ....|.+|+++++|+ +|+++..++ .+.
T Consensus 134 ~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~----id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 134 GGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRL----IDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp BCCSCCCEEEEETTEEEEEEEEEBT-EEEEE----EETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred cCCCCCCEEEECCCCCCeEEEEeCC-CcEEE----EECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence 3578999999997 4788998876 88999 7776543322 345799999999998 899886433 455
Q ss_pred EEcCCCcEE--EEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998 123 VFQSDGTFV--GKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE 199 (319)
Q Consensus 123 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (319)
.++.++... ..+. ....|.+++++| +|.+|+++..+++|.+++.++.... .+.. .....
T Consensus 209 ~~~~~g~~~~~~~l~-------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~----~~~~-------~~~~~ 270 (430)
T 3tc9_A 209 ILTRESGFKVITELT-------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT----PLFT-------IQDSG 270 (430)
T ss_dssp EEEGGGTSCSEEEEE-------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE----EEEE-------CSSSS
T ss_pred EEeCCCceeeeeeec-------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEEE-------cCCCC
Confidence 566555432 2221 235789999999 8999999999999999998864221 1111 11225
Q ss_pred CceeEEEcCCCc-EEEEeCCCCeEEEEeCCCC--E---EEEe-CC---CCCC-----cccccCcc-eEEEc--------C
Q psy13998 200 HPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR--V---ITSF-GS---EGSE-----EGQLKFPR-GVAVD--------D 255 (319)
Q Consensus 200 ~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~--~---~~~~-~~---~~~~-----~~~~~~~~-~i~~~--------~ 255 (319)
.|.+++++|+|+ +|+++..+++|++++.++. . ...+ +. .+.. ...+..|. +++++ +
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~ 350 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD 350 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence 689999999997 9999999999999986542 1 1111 11 1111 23467788 78884 5
Q ss_pred CCcEEEEeCCCCEEEEEcCCCceEEeeccc-----C------CCCCCCCCcceEEEcc-CCcEEEEeCCCCeEEeC
Q psy13998 256 QGYISVGDSGNNRIQIFTPDGQFLRAFGCW-----G------SGDGEFKGLEGVAVMS-NGNILVCDRENHRIQVF 319 (319)
Q Consensus 256 ~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~-----~------~~~~~~~~~~~l~~~~-~g~~~v~~~~~~~i~v~ 319 (319)
+|++|+++..+++|++++++|+.....+.. + .....+..|.+|++++ +|.+|+++..+++|+.+
T Consensus 351 ~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 351 EYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp CEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 689999999999999999999766555431 1 1123467899999999 58899999999999863
No 140
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.89 E-value=1.8e-20 Score=155.74 Aligned_cols=221 Identities=15% Similarity=0.273 Sum_probs=168.9
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcE
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTF 130 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~ 130 (319)
..+.++. .+++++++++.++.|++ |+..+......+. .+.++++ +++++++++.++.|++|| .+++.
T Consensus 134 ~~v~~~~--~d~~~l~~g~~dg~i~i----wd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 134 KGVYCLQ--YDDQKIVSGLRDNTIKI----WDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CCEEEEE--CCSSEEEEEESSSCEEE----EESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred CcEEEEE--ECCCEEEEEeCCCeEEE----EeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 3455554 47899999999999999 8887766655443 4566666 678999999999999999 67777
Q ss_pred EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998 131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 210 (319)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (319)
+..+ ..+...+.+++++ +..+++++.++.|.+||+...... ...... ..+...+.++++ ++
T Consensus 206 ~~~~------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~------~~~~~~v~~~~~--~~ 266 (435)
T 1p22_A 206 LNTL------IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI---TLRRVL------VGHRAAVNVVDF--DD 266 (435)
T ss_dssp EEEE------CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC---EEEEEE------CCCSSCEEEEEE--ET
T ss_pred EEEE------cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc---eeeeEe------cCCCCcEEEEEe--CC
Confidence 7777 4556677888876 458888999999999998743110 011111 334455677777 67
Q ss_pred cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCC
Q psy13998 211 RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSG 288 (319)
Q Consensus 211 ~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~ 288 (319)
+++++++.++.|++||. +++.+..+ ..+...+.+++++ ++++++++.++.|++|| .+++.+..+
T Consensus 267 ~~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~------ 332 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTSTCEFVRTL------NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL------ 332 (435)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEE------ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE------
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEE------cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE------
Confidence 78999999999999995 56777776 4555567777774 67899999999999999 468888888
Q ss_pred CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 289 DGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.++...+.++++ ++.++++++.|+.|++|
T Consensus 333 ~~h~~~v~~~~~--~~~~l~sg~~dg~i~vw 361 (435)
T 1p22_A 333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVW 361 (435)
T ss_dssp CCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred eCCcCcEEEEEe--cCCEEEEEeCCCcEEEE
Confidence 567778898888 67899999999999998
No 141
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.88 E-value=2e-20 Score=145.45 Aligned_cols=226 Identities=24% Similarity=0.326 Sum_probs=161.7
Q ss_pred cccccCCCccchhcc-cccee---eeecccCC-----CCCcCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee
Q psy13998 23 GIGQVGTTPRSQYLQ-KRRLQ---FKIGSRGS-----EPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV 93 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~-~~~~~---~~~~~~~~-----~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~ 93 (319)
....+++++++.+.. ..... ..+...+. ....+..|.+|+++++|++|+++. ++.|.+ |+..+...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~----~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVT----LAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEE----ECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEE----EeCCCceE
Confidence 445566777776555 32221 22221111 123346899999999999999988 889999 77654332
Q ss_pred eE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEE
Q psy13998 94 FL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ 169 (319)
Q Consensus 94 ~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~ 169 (319)
.. .+..|.+++++++|++|+++..++.|.+|+.......... ......|.+++++++|++|++...++.|.
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-----FTGLNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-----CCSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-----cccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence 21 2357899999999999999888889999984432222111 22345789999999999999998889999
Q ss_pred EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcc
Q psy13998 170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPR 249 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (319)
+|+.++... . ... ......|.+++++++|++|+++..++.|.+|+.++....... ...+..|.
T Consensus 175 ~~~~~~~~~------~-~~~-----~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~p~ 237 (270)
T 1rwi_B 175 KLEAESNNQ------V-VLP-----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-----FTGLNTPL 237 (270)
T ss_dssp EECTTTCCE------E-ECC-----CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-----CCSCSCEE
T ss_pred EEecCCCce------E-eec-----ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-----cCCCCCce
Confidence 999876321 1 110 123367899999999999999998999999998876544431 22346789
Q ss_pred eEEEcCCCcEEEEeCCCCEEEEEcCC
Q psy13998 250 GVAVDDQGYISVGDSGNNRIQIFTPD 275 (319)
Q Consensus 250 ~i~~~~~g~~~v~~~~~~~i~~~~~~ 275 (319)
+++++++|++|+++..+++|.+|+..
T Consensus 238 ~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 238 AVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred eEEECCCCCEEEEECCCCEEEEEcCC
Confidence 99999999999999999999999965
No 142
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=6.5e-20 Score=155.70 Aligned_cols=266 Identities=12% Similarity=0.121 Sum_probs=183.9
Q ss_pred cCCCccchhccccceeeeecccCCCCCcC-------CCCcceEEcCCCcEEEEeCCCCeEEEecccccc--ccceeeEEe
Q psy13998 27 VGTTPRSQYLQKRRLQFKIGSRGSEPGCF-------TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDL--KTNCVFLAF 97 (319)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~ 97 (319)
..++|++.++.+...+..+..|+...++. ..|++++++|+|+++++++.++.|.+ |+. .+......+
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v----~D~~~~t~~~~~~i 218 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDM----IDLWAKEPTKVAEI 218 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEE----EETTSSSCEEEEEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEE----EECcCCCCcEEEEE
Confidence 34788888777776666666665544321 23789999999998888778899999 888 666555443
Q ss_pred ---cCceeeEEcC----CCcEE-EEcCCCCeEEEEc-CCCcEEEEecCCCccCC-----CCCCceeEEEeCCC-eEEEEe
Q psy13998 98 ---TWPRGIAVGP----DNSIV-VADSSNHRVQVFQ-SDGTFVGKFGSMGNKAG-----QLEHPHYIAVSNTN-RVIVSD 162 (319)
Q Consensus 98 ---~~~~~l~~~~----~g~~~-~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~g-~~~~~~ 162 (319)
..|.+++++| +|+.+ ++...++.|.+|| .+++.+..+...+.... ....+.++++++++ .++++.
T Consensus 219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 219 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 3689999999 98755 4444689999999 67777777754321100 12367889999965 677788
Q ss_pred CCCCEEEEEecCCceeeecCceee--eecccCCcCCCCCCceeEEEcCCCcE-EEEeCCCCeEEEEeC-CCCEEEEeCCC
Q psy13998 163 SNNHRVQIFDVNGRVFQSDGTFVG--KFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDV-NGRVITSFGSE 238 (319)
Q Consensus 163 ~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~i~~~~~-~~~~~~~~~~~ 238 (319)
..+++|.+||.... +.+. .+ .....|.+++++|+|++ |+++..++.|.+||. +++.+..+...
T Consensus 299 ~~~g~i~vvd~~~~------~~l~~~~i-------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 299 KETGKVLLVNYKDI------DNLTVTSI-------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp TTTTEEEEEECTTS------SSCEEEEE-------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred CCCCeEEEEEecCC------CcceeEEe-------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 88999999998742 1111 11 12345788999999975 556667889999996 56665555211
Q ss_pred CCCcccccCcceEE-EcCC-CcEEEEeC-CCCEEEEEcCC--------CceEEeecccCCCCCCCCCcceEEEccCCcEE
Q psy13998 239 GSEEGQLKFPRGVA-VDDQ-GYISVGDS-GNNRIQIFTPD--------GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL 307 (319)
Q Consensus 239 ~~~~~~~~~~~~i~-~~~~-g~~~v~~~-~~~~i~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 307 (319)
. ..+.. .++. ++|+ |.+|+++. .+++|.+|+.+ ++.++++ ..+...+..++++|||+.+
T Consensus 366 ~--~ph~g--~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l------~~~g~~~~~v~~~pdg~~l 435 (543)
T 1nir_A 366 K--TPHPG--RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL------QGQGGGSLFIKTHPKSSHL 435 (543)
T ss_dssp S--SBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE------ECSCSCCCCEECCTTCCEE
T ss_pred C--CCCCC--CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE------EcCCCCceEEEcCCCCCcE
Confidence 0 01111 2333 4677 67888876 68999999953 6778887 4555677889999999977
Q ss_pred EEeC-------CCCeEEeC
Q psy13998 308 VCDR-------ENHRIQVF 319 (319)
Q Consensus 308 v~~~-------~~~~i~v~ 319 (319)
.++. .++.|++|
T Consensus 436 ~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 436 YVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp EECCTTCSSHHHHTCEEEE
T ss_pred EEecCCCCCcccCceEEEE
Confidence 7665 25678876
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=3.7e-19 Score=143.01 Aligned_cols=239 Identities=17% Similarity=0.260 Sum_probs=156.2
Q ss_pred CCCCcceEEcCCCcEE-EEeCCCCeEEEeccccccc--cce--eeEEe---cCceeeEEcCCCc-EEEEcCCCCeEEEEc
Q psy13998 55 FTWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLK--TNC--VFLAF---TWPRGIAVGPDNS-IVVADSSNHRVQVFQ 125 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~-~~~~~~~~v~~~~~~~~~~--~~~--~~~~~---~~~~~l~~~~~g~-~~~~~~~~~~i~~~~ 125 (319)
...|.+++++|+|+.+ +++..++.|.+ |++. ++. ....+ ..|..++++|+|+ +|+++..++.|.+|+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLA----YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEE----EEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEE----EEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3578999999999954 44454599999 7765 222 22222 3688999999997 566666788999999
Q ss_pred C-CCc---EEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeee--cccCCcCCCC
Q psy13998 126 S-DGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKF--GSMGNKAGQL 198 (319)
Q Consensus 126 ~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 198 (319)
. ++. ....+. ....+.+++++|+++ +|+++..++.|.+|++... ++..... ... ....
T Consensus 113 ~~~~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~---~~~~ 177 (343)
T 1ri6_A 113 LEDGLPVGVVDVVE-------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD-----GHLVAQDPAEVT---TVEG 177 (343)
T ss_dssp EETTEEEEEEEEEC-------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT-----SCEEEEEEEEEE---CSTT
T ss_pred CCCCcccccccccc-------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC-----Cceeeecccccc---cCCC
Confidence 5 332 222221 224578899999986 5555558899999998741 1221100 000 1122
Q ss_pred CCceeEEEcCCCc-EEEEeCCCCeEEEEeCC---CCE--EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEE
Q psy13998 199 EHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN---GRV--ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQI 271 (319)
Q Consensus 199 ~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~ 271 (319)
..|.+++++|+++ +|+++..++.|.+|+.+ +.. ...+............+.+++++|+|+ +|+++..++.|.+
T Consensus 178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 4678899999997 66777788999999974 222 222211111111234567899999986 6667778999999
Q ss_pred EcCC--Cc---eEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 272 FTPD--GQ---FLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 272 ~~~~--g~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
|+.+ +. .+..+ ... ..|.+++|+|+|+ +++++..++.|.+|
T Consensus 258 ~d~~~~~~~~~~~~~~------~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 258 FSVSEDGSVLSKEGFQ------PTE-TQPRGFNVDHSGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp EEECTTSCCEEEEEEE------ECS-SSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred EEEcCCCCceEEeeee------cCC-CccceEEECCCCCEEEEecCCCCeEEEE
Confidence 9954 22 23333 122 2389999999998 56666578999887
No 144
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=4.2e-19 Score=143.92 Aligned_cols=253 Identities=15% Similarity=0.233 Sum_probs=155.7
Q ss_pred cCCCCcceEEcCCCcEEEEeCC----CCeEEEeccccccccc-eeeE---Ee----cCceeeEEcCCCc-EEEEcCCCCe
Q psy13998 54 CFTWPRGIAVGPDNSIVVADSS----NHRVQVCFPHFDLKTN-CVFL---AF----TWPRGIAVGPDNS-IVVADSSNHR 120 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~~~~~~----~~~v~~~~~~~~~~~~-~~~~---~~----~~~~~l~~~~~g~-~~~~~~~~~~ 120 (319)
+...|..++++|+|+++++.+. ++.|.+ |+.... +... .. ..|..+++ +++ ++++...++.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~----~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~ 121 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSA----FAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGS 121 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEE----EEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEE----EEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCE
Confidence 4578999999999996555544 379999 766542 2221 21 35677888 554 7777777899
Q ss_pred EEEEcCC--CcEE---EEecCCCc----cCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCc-eeeeec
Q psy13998 121 VQVFQSD--GTFV---GKFGSMGN----KAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGT-FVGKFG 189 (319)
Q Consensus 121 i~~~~~~--~~~~---~~~~~~~~----~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~ 189 (319)
|.+|+.+ +... ......+. .......+++++++|+|+ +|+++..++.+.+|+++...-....+ +.....
T Consensus 122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 9999943 3211 11111110 011234568899999997 67778788999999876421000001 110000
Q ss_pred ccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCC-C
Q psy13998 190 SMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSG-N 266 (319)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~-~ 266 (319)
...........|.+++++|+|+ +|+++..++.|.+|+.+...+..+........+...|.+++++|+|+ +|++... +
T Consensus 202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 0000012234678999999996 66777678999999964333222211111122344578999999997 5567766 7
Q ss_pred CEEEEEcCC---Cce--EEeecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 267 NRIQIFTPD---GQF--LRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 267 ~~i~~~~~~---g~~--~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
+.|.+|+.+ |+. +..+ .. ...|.+++|+|||+ +++++..++.|.+|
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~~------~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGYQ------LT-GIHPRNFIITPNGKYLLVACRDTNVIQIF 333 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEEE------EC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred CEEEEEEEcCCCCcEEEeeEe------cC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence 899999853 442 3333 12 34689999999998 66666678888885
No 145
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.7e-19 Score=146.95 Aligned_cols=251 Identities=18% Similarity=0.210 Sum_probs=174.5
Q ss_pred CcCCCCcceEEcC--CCcEEEEeCCCCeEEEeccccccccceeeEE-------ecCceeeEE-------cCCCc-EEEEc
Q psy13998 53 GCFTWPRGIAVGP--DNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-------FTWPRGIAV-------GPDNS-IVVAD 115 (319)
Q Consensus 53 ~~~~~~~~v~~~~--~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~l~~-------~~~g~-~~~~~ 115 (319)
+.+..|.+|+++| ++++|++....+.|++ +|+++...... +..|.+|++ +++|+ +|+++
T Consensus 136 ~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~----ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad 211 (496)
T 3kya_A 136 CGFSDNGRLAFDPLNKDHLYICYDGHKAIQL----IDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI 211 (496)
T ss_dssp BCCCSEEEEEEETTEEEEEEEEEETEEEEEE----EETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred cccCCCCEEEEccCCCCEEEEEECCCCeEEE----EECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe
Confidence 4466899999998 3678999887788998 77765444331 235899999 99987 88887
Q ss_pred CCCC------eEEEEcCC--CcEE-----EEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecC-------
Q psy13998 116 SSNH------RVQVFQSD--GTFV-----GKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN------- 174 (319)
Q Consensus 116 ~~~~------~i~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~------- 174 (319)
..++ .|.+++.. |... ..+. ....|.+++++| ++.+|++...++.|.+++++
T Consensus 212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~ 284 (496)
T 3kya_A 212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIK 284 (496)
T ss_dssp CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred CCCCCcccCceEEEEecCCCCceeecccceeec-------cCCCceEEEEcCCCCeEEEEECCCCEEEEEeccccccccc
Confidence 7652 37777532 3321 1121 235779999999 78999999999999999986
Q ss_pred Ccee-ee-----cCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCC--EE---EEe-C---CC
Q psy13998 175 GRVF-QS-----DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR--VI---TSF-G---SE 238 (319)
Q Consensus 175 ~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~--~~---~~~-~---~~ 238 (319)
+... .+ .+ ....+.. ......|.+|+++|+|+ +|+++..+++|++++.++. .+ ..+ + ..
T Consensus 285 tg~~~tp~~~~~~g-~~~~l~~----~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 285 NGGSWDPIVKNNPN-TFKQLFT----IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp TTCCCCCBGGGCTT-TEEEEEE----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred Cceeeccccccccc-ccceeEe----cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 3221 00 00 0111100 12234688999999997 8999999999999875542 11 111 1 11
Q ss_pred CC-----CcccccCcc-eEEEc-------CCCcEEEEeCCCCEEEEEcCCCceEEeeccc-----------C------CC
Q psy13998 239 GS-----EEGQLKFPR-GVAVD-------DQGYISVGDSGNNRIQIFTPDGQFLRAFGCW-----------G------SG 288 (319)
Q Consensus 239 ~~-----~~~~~~~~~-~i~~~-------~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~-----------~------~~ 288 (319)
+. ....+..|. +++++ ++|.+|+++..+++|++++++|......+.. + ..
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~ 439 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLRE 439 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTT
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchh
Confidence 11 124567899 77886 6789999999999999999999665444321 1 11
Q ss_pred CCCCCCcceEEEccC-CcEEEEeCCCCeEEeC
Q psy13998 289 DGEFKGLEGVAVMSN-GNILVCDRENHRIQVF 319 (319)
Q Consensus 289 ~~~~~~~~~l~~~~~-g~~~v~~~~~~~i~v~ 319 (319)
...+..|.+|+++++ |.+|+++..+++||.+
T Consensus 440 ~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 440 VARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred hhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 235788999999996 9999999999999864
No 146
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.87 E-value=1.5e-19 Score=144.06 Aligned_cols=238 Identities=14% Similarity=0.141 Sum_probs=167.0
Q ss_pred CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE-----------------------EecCceeeEEcC-C
Q psy13998 53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----------------------AFTWPRGIAVGP-D 108 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~-~ 108 (319)
+.+..|.+++++++|++++++..++.|.. |+..+..... ....|.++++++ +
T Consensus 16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 16 APSYAPNSFTFDSTNKGFYTSVQDGRVIK----YEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp CSSSCCCCEECCTTCSSEEEECTTSEEEE----ECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CccCCceEEEEcCCCCEEEEEcCCCeEEE----ECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 45788999999999996666778899999 7665432211 023688999997 7
Q ss_pred CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-----------------CCEEEE
Q psy13998 109 NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-----------------NHRVQI 170 (319)
Q Consensus 109 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-----------------~~~i~~ 170 (319)
|++|+++... .|.+++.++..+..+..... ......|.++++++ +|++|+++.. .+.|.+
T Consensus 92 g~l~v~d~~~-~i~~~d~~~g~~~~~~~~~~-~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 92 NQLYIVDCYY-HLSVVGSEGGHATQLATSVD-GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TEEEEEETTT-EEEEECTTCEECEEEESEET-TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred CcEEEEECCC-CEEEEeCCCCEEEEecccCC-CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 8999997654 58899976544333321110 12235689999999 9999999754 367888
Q ss_pred EecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCC---EEEEeCCCCCCccccc
Q psy13998 171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR---VITSFGSEGSEEGQLK 246 (319)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~ 246 (319)
++..+.... .+ ......|.+++++++|+ +|+++..+++|++|+.++. ....+. . ...
T Consensus 170 ~d~~~~~~~-------~~------~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-----~-~~g 230 (322)
T 2fp8_A 170 YDPSTKETT-------LL------LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-----K-IPN 230 (322)
T ss_dssp EETTTTEEE-------EE------EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-----E-CSS
T ss_pred EeCCCCEEE-------Ee------ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-----e-CCC
Confidence 887643211 11 11235688999999986 8899888899999997642 122221 0 112
Q ss_pred CcceEEEcCCCcEEEEeCC----------CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998 247 FPRGVAVDDQGYISVGDSG----------NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI 316 (319)
Q Consensus 247 ~~~~i~~~~~g~~~v~~~~----------~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i 316 (319)
|.+|+++++|++|++... .+.|.+++++|+.+..+..... .....+.++++ .+|++|+++..++.|
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g--~~~~~~~~~~~-~~g~L~v~~~~~~~i 306 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPP--FAGEHFEQIQE-HDGLLYIGTLFHGSV 306 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTT--TTTSCCCEEEE-ETTEEEEECSSCSEE
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCC--CccccceEEEE-eCCEEEEeecCCCce
Confidence 899999999999999865 5789999999998887753211 11456788877 478999999888888
Q ss_pred EeC
Q psy13998 317 QVF 319 (319)
Q Consensus 317 ~v~ 319 (319)
.+|
T Consensus 307 ~~~ 309 (322)
T 2fp8_A 307 GIL 309 (322)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 147
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.9e-21 Score=169.98 Aligned_cols=237 Identities=13% Similarity=0.061 Sum_probs=177.5
Q ss_pred cccccccCCCccchhccccceeeeecccCCC----------CCcCCCCcceEEcCC--CcEEEEeCCCCeEEEecccccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE----------PGCFTWPRGIAVGPD--NSIVVADSSNHRVQVCFPHFDL 88 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~--g~~~~~~~~~~~v~~~~~~~~~ 88 (319)
...|.+++|+|++.+++++..+..+..|+.. .+|...+.+++|+++ ++++++++.|+.|++ |+.
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v----wd~ 84 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI----WKE 84 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE----EEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE----EEC
Confidence 6789999999999999999877777666532 356678999999987 899999999999999 888
Q ss_pred ccce--eeE----EecCceeeEEcCC--CcEEEEcCCCCeEEEEcCCCc---EEEEecCCCccCCCCCCceeEEEeC---
Q psy13998 89 KTNC--VFL----AFTWPRGIAVGPD--NSIVVADSSNHRVQVFQSDGT---FVGKFGSMGNKAGQLEHPHYIAVSN--- 154 (319)
Q Consensus 89 ~~~~--~~~----~~~~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--- 154 (319)
.+.. ... +...+.+++++|+ ++++++++.++.|++||.... ....+ ..+...+.+++++|
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~------~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII------DAHAIGVNSASWAPATI 158 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE------ECCSSCEEEEEECCCC-
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe------ecCCCceEEEEecCccc
Confidence 7654 222 2346789999999 899999999999999994322 12222 34556789999999
Q ss_pred ----------CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC---CcEEEEeCCCCe
Q psy13998 155 ----------TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSDSNNHR 221 (319)
Q Consensus 155 ----------~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~ 221 (319)
++.++++++.++.|++||++.... .......+ ..+...+.+++++|+ +.++++++.++.
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~------~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTL------EGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp --------CGGGCCEEEEETTSCEEEEEEETTTT--EEEEEEEE------CCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEeccCCcc--cceeeeee------cCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 588999999999999999864210 00122222 345567899999999 899999999999
Q ss_pred EEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC
Q psy13998 222 VQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD 275 (319)
Q Consensus 222 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~ 275 (319)
|++||.................+...+.+++++|+|.++++++.++.|++|+.+
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 999996432100000001112345568899999999999999999999999954
No 148
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.86 E-value=3.6e-19 Score=140.16 Aligned_cols=229 Identities=15% Similarity=0.103 Sum_probs=160.5
Q ss_pred CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE--EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEE
Q psy13998 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFV 131 (319)
Q Consensus 55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 131 (319)
...+.+..|++ ++.+|+++..++.|.. |+..+..... ....+.+++++++|++|++. +..|.+||.++...
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~----~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCR----WDSFTKQVQRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA 85 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEE----EETTTCCEEEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEE----EECCCCcEEEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE
Confidence 45678999998 5679999999999999 7776543321 22467899999999988876 56899999654333
Q ss_pred EEecCCCccCCCCCCceeEEEeCCCeEEEEeC-----------CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998 132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH 200 (319)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (319)
..+..... ......+++++++++|++|++.. ..+.|..++.++.. ... ......
T Consensus 86 ~~~~~~~~-~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-------~~~-------~~~~~~ 150 (297)
T 3g4e_A 86 VVLATVDN-DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-------KKY-------FDQVDI 150 (297)
T ss_dssp EEEEECCT-TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-------EEE-------EEEESB
T ss_pred EEEEecCC-CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-------EEE-------eecccc
Confidence 33321110 11234678999999999999763 23456666655421 111 112356
Q ss_pred ceeEEEcCCCc-EEEEeCCCCeEEEEeC---CCCEE--EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 201 PHYIAVSNTNR-VIVSDSNNHRVQIFDV---NGRVI--TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 201 ~~~~~~~~~g~-~~v~~~~~~~i~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
|++++++|+++ +|+++..++.|++|+. +|... +.+... ......|.+++++++|++|++....++|.+|++
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~---~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL---EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC---CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC---CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 88999999985 7888888899999984 34331 111100 122346899999999999999988899999998
Q ss_pred C-CceEEeecccCCCCCCCCCcceEEEc-cCCc-EEEEeCCC
Q psy13998 275 D-GQFLRAFGCWGSGDGEFKGLEGVAVM-SNGN-ILVCDREN 313 (319)
Q Consensus 275 ~-g~~~~~~~~~~~~~~~~~~~~~l~~~-~~g~-~~v~~~~~ 313 (319)
+ |+.+..+ ......|++++|. ||++ +|++....
T Consensus 228 ~tG~~~~~i------~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 228 VTGKRLQTV------KLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp TTCCEEEEE------ECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCceEEEEE------ECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 6 9988887 3444679999998 7765 88887654
No 149
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=2.9e-20 Score=144.75 Aligned_cols=214 Identities=11% Similarity=0.042 Sum_probs=138.3
Q ss_pred cccccCCCcc----chhccccceeeeecccCCCCCcCCCCcceEEcCCCcEEEEeC--CCCeEEEeccccccccceee-E
Q psy13998 23 GIGQVGTTPR----SQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADS--SNHRVQVCFPHFDLKTNCVF-L 95 (319)
Q Consensus 23 ~i~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~--~~~~v~~~~~~~~~~~~~~~-~ 95 (319)
.|..++++|+ ++++..+.... .++++ ++|+++.+.. .++.|++ |+....+.. .
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~-------------~v~~l---~~g~lv~ss~~g~d~~V~~----~~~s~dG~~~~ 172 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIK-------------AVLGL---TKRRLVSSSGTLSDQQVEV----MTFAEDGGGKE 172 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEE-------------EEEEE---TTTEEEEEESSSTTCEEEE----EEECTTSCEEE
T ss_pred ceEEEEECCCccccccEEEeCCCeE-------------EEEec---CCCcEEEecccCCCCcEEE----EEECCCCceee
Confidence 4556666666 55555544332 22333 5677777744 6899999 887543332 2
Q ss_pred ----EecCceeeEEcC---CCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE-------
Q psy13998 96 ----AFTWPRGIAVGP---DNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV------- 160 (319)
Q Consensus 96 ----~~~~~~~l~~~~---~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~------- 160 (319)
+-.....++|++ ++.++++++.|++|++|| .+|+.+..+... ..+...+..++|+|+|++++
T Consensus 173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~---~~~v~~v~~vafSpdG~~lvs~s~~~~ 249 (356)
T 2w18_A 173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID---DSYQASVCHKAYSEMGLLFIVLSHPCA 249 (356)
T ss_dssp EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC---C---CCCEEEEEEETTEEEEEEC----
T ss_pred eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC---CcceeeeEEEEECCCCCEEEEeccCCC
Confidence 223556778887 678999999999999999 678888887421 11234567789999998774
Q ss_pred -----EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEE
Q psy13998 161 -----SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITS 234 (319)
Q Consensus 161 -----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~ 234 (319)
+++.++++++||..+. +.+..+.... ..++.... +..+.++.++++++.|+.|++||. +++.+.+
T Consensus 250 ~w~laSGs~D~tIklWd~~tg------k~l~v~~~~~-p~Gh~~~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t 320 (356)
T 2w18_A 250 KESESLRSPVFQLIVINPKTT------LSVGVMLYCL-PPGQAGRF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL 320 (356)
T ss_dssp --------CCEEEEEEETTTT------EEEEEEEECC-CTTCCCCE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEE
T ss_pred cceeeccCCCcEEEEEECCCC------EEEEEEEeec-cCCCccee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 4567889999998754 3222211000 01111111 223334678899999999999995 6788888
Q ss_pred eCCCCCCcccccCcc-eEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 235 FGSEGSEEGQLKFPR-GVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 235 ~~~~~~~~~~~~~~~-~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
+ .++...+. .++|+|+|+++++++.|++|++|+.
T Consensus 321 L------~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 321 L------PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E------CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred e------cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 7 45555555 5899999999999999999999984
No 150
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.86 E-value=1.2e-19 Score=145.72 Aligned_cols=250 Identities=15% Similarity=0.166 Sum_probs=162.8
Q ss_pred CCCcceEEcCCCcEEEEeCC--CC--eEEEeccccccccceee----------EEecCceeeEEcCCCcEEEEcCC----
Q psy13998 56 TWPRGIAVGPDNSIVVADSS--NH--RVQVCFPHFDLKTNCVF----------LAFTWPRGIAVGPDNSIVVADSS---- 117 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~--~~--~v~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~g~~~~~~~~---- 117 (319)
..|.+|+++++|++|++... ++ +|.. ++ +.... .++..|.+++++++|++|+++..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~----~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~ 90 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAE----LT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSK 90 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEE----EE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHT
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEE----EC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcC
Confidence 57999999999999999642 23 4444 33 12211 13568899999999999999876
Q ss_pred -CCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeC---CCCEEEEEecCCcee-e-ecC--cee--
Q psy13998 118 -NHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDS---NNHRVQIFDVNGRVF-Q-SDG--TFV-- 185 (319)
Q Consensus 118 -~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~---~~~~i~~~~~~~~~~-~-~~~--~~~-- 185 (319)
..+|.+||. +++.+..+........+...+.++++++ ++.+|+++. .++.|.+||+.+... . ..+ ...
T Consensus 91 ~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 91 SVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp SCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence 579999995 5776766654322122335679999997 578999988 788999999864221 1 000 000
Q ss_pred -eeecccCCc------CC----CCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC----CCEE-EEeCCCCCCcccccCc
Q psy13998 186 -GKFGSMGNK------AG----QLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN----GRVI-TSFGSEGSEEGQLKFP 248 (319)
Q Consensus 186 -~~~~~~~~~------~~----~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~----~~~~-~~~~~~~~~~~~~~~~ 248 (319)
..+...+.. .. ....+.+|+++|+|+ +|++......++.++.. +... ..+...-...+....|
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p 250 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC 250 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC
Confidence 000000000 00 113578999999984 77777777788888732 1100 0000000001122368
Q ss_pred ceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998 249 RGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI 316 (319)
Q Consensus 249 ~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i 316 (319)
.+++++++|++|++...+++|.+|++ +|+...... ......|.+++++++|++|+++...+++
T Consensus 251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-----~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 251 DGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-----DEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-----CGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred ceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-----CCceecCCeeEECCCCcEEEEeCccccc
Confidence 89999999999999999999999998 887544332 1235679999999999999998866544
No 151
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.86 E-value=1.1e-19 Score=149.64 Aligned_cols=204 Identities=13% Similarity=0.194 Sum_probs=152.2
Q ss_pred CCcCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE-----------------EecCceeeEEcC-CCcEE
Q psy13998 52 PGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----------------AFTWPRGIAVGP-DNSIV 112 (319)
Q Consensus 52 ~~~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~-~g~~~ 112 (319)
.+|-..+.+++|+| +++++++++.++.|++ |+..+..... +...+.+++++| +++++
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~i----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVL----YDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEE----EECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEE----EECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 45778999999999 9999999999999999 7776543221 334678999999 66788
Q ss_pred EEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC---CCeEEEEeCCCCEEEEEecCCceeeecCceeeee
Q psy13998 113 VADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN---TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKF 188 (319)
Q Consensus 113 ~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (319)
++++.++.|++|+ ..++....+. +...+..+.+.+ ++.++++++.++.|.+||+... +.+..+
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------~~~~~~ 182 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADVFN-------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG------SCSHIL 182 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE-------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS------CCCEEE
T ss_pred EEEeCCCeEEEeeCCCCccceecc-------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc------ceeeee
Confidence 9999999999999 4555555553 224567888887 4458999999999999998742 333333
Q ss_pred cccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCC-C-EEEEeCCC---------CCCcccccCcceEEEcCC
Q psy13998 189 GSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNG-R-VITSFGSE---------GSEEGQLKFPRGVAVDDQ 256 (319)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~-~-~~~~~~~~---------~~~~~~~~~~~~i~~~~~ 256 (319)
..+...+.+++++|++. ++++++.++.|++||... . ....+... .....+...+.+++++|+
T Consensus 183 ------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 183 ------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp ------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred ------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 33556678999999986 688999999999999642 2 22332110 001234556889999999
Q ss_pred CcEEEEeCCCCEEEEEcC-CCce
Q psy13998 257 GYISVGDSGNNRIQIFTP-DGQF 278 (319)
Q Consensus 257 g~~~v~~~~~~~i~~~~~-~g~~ 278 (319)
++++++++.++.|++|+. +++.
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCB
T ss_pred CCEEEEecCCCeEEEEECCCCcc
Confidence 999999999999999995 4444
No 152
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.86 E-value=1.8e-18 Score=134.10 Aligned_cols=217 Identities=18% Similarity=0.166 Sum_probs=162.7
Q ss_pred CCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCCc
Q psy13998 56 TWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGT 129 (319)
Q Consensus 56 ~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~ 129 (319)
..|.++++++ ++++|+++..++.|.+ ++........ .+..|.+++++++ +.+|+++...++|.+++.+++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~----~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGR----ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEE----EESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEE----EecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 4678999998 5679999999999999 7765433222 2358999999985 679999998999999998775
Q ss_pred EEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC--CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 130 FVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN--NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
....+. ......|.++++++ .+.+|+++.. .+.|.++++++.. ...+. ......|.++++
T Consensus 112 ~~~~~~-----~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-------~~~~~-----~~~~~~P~gia~ 174 (267)
T 1npe_A 112 QRRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-------RRILA-----QDNLGLPNGLTF 174 (267)
T ss_dssp SCEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-------CEEEE-----CTTCSCEEEEEE
T ss_pred CEEEEE-----ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-------cEEEE-----ECCCCCCcEEEE
Confidence 443332 12236789999999 6789999876 5789988887632 11111 123457999999
Q ss_pred cCC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecc
Q psy13998 207 SNT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGC 284 (319)
Q Consensus 207 ~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~ 284 (319)
+++ +++|+++...+.|.+++.++.....+. .....|.+++++ .+.+|+++..+++|.+++. +|+.+..+.
T Consensus 175 d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~------~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~- 246 (267)
T 1npe_A 175 DAFSSQLCWVDAGTHRAECLNPAQPGRRKVL------EGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH- 246 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTEEEEEEEE------ECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred cCCCCEEEEEECCCCEEEEEecCCCceEEEe------cCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc-
Confidence 986 589999999999999999876554441 234568899987 5789999999999999997 478887773
Q ss_pred cCCCCCCCCCcceEEEccCCc
Q psy13998 285 WGSGDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~g~ 305 (319)
.+....|.+|++.|++.
T Consensus 247 ----~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 247 ----PHKQTRLYGITIALSQC 263 (267)
T ss_dssp ----CSSCCCCCCEEEECSCC
T ss_pred ----cccccccceeeecCccC
Confidence 12233699999999875
No 153
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=4e-20 Score=156.99 Aligned_cols=286 Identities=10% Similarity=0.078 Sum_probs=190.5
Q ss_pred hccchhhhhhhhhh-cccccccCCCccchhccccceeeeecccCC--CCCc-------CCCCcceEEcC----CCcEEEE
Q psy13998 7 AKNINSCFLLQTLL-VSGIGQVGTTPRSQYLQKRRLQFKIGSRGS--EPGC-------FTWPRGIAVGP----DNSIVVA 72 (319)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~-------~~~~~~v~~~~----~g~~~~~ 72 (319)
..|..+++++..+. ...+..++++|+++++...+.+..+..|+. ..+. -..|.+++|+| +|+++++
T Consensus 163 v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v 242 (543)
T 1nir_A 163 LVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA 242 (543)
T ss_dssp EEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred EEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEE
Confidence 45566666666655 223678889999999887766666665555 3332 24689999999 9986555
Q ss_pred eC-CCCeEEEeccccccccceeeEEec---------------CceeeEEcCCC-cEEEEcCCCCeEEEEcC-CCcEEE--
Q psy13998 73 DS-SNHRVQVCFPHFDLKTNCVFLAFT---------------WPRGIAVGPDN-SIVVADSSNHRVQVFQS-DGTFVG-- 132 (319)
Q Consensus 73 ~~-~~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~g-~~~~~~~~~~~i~~~~~-~~~~~~-- 132 (319)
++ .+++|.+ ||..+.+.+..+. .+.++.+++++ .++++...+++|.+||. +.+.+.
T Consensus 243 ~~~~~~~v~v----~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 243 GAYWPPQFAI----MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp EEEESSEEEE----EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE
T ss_pred EEccCCeEEE----EeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE
Confidence 54 6899999 8877766555332 35688999976 46777888899999994 333222
Q ss_pred EecCCCccCCCCCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE-EcCC-
Q psy13998 133 KFGSMGNKAGQLEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA-VSNT- 209 (319)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 209 (319)
.+. ....|.+++|+|+|++ |+++..+++|.+||..+. +++..+... . ..+.. .+.. ++|+
T Consensus 319 ~i~-------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg------~l~~~i~~g-~-~ph~g--~g~~~~~p~~ 381 (543)
T 1nir_A 319 SIG-------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR------RLSALVDVG-K-TPHPG--RGANFVHPKY 381 (543)
T ss_dssp EEE-------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT------EEEEEEECS-S-SBCCT--TCEEEEETTT
T ss_pred Eec-------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC------eEEEeeccC-C-CCCCC--CCcccCCCCC
Confidence 331 2246789999999985 556667899999999853 444443211 0 11111 1233 3676
Q ss_pred CcEEEEeC-CCCeEEEEeCC--------CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC-------CCCEEEEEc
Q psy13998 210 NRVIVSDS-NNHRVQIFDVN--------GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS-------GNNRIQIFT 273 (319)
Q Consensus 210 g~~~v~~~-~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~-------~~~~i~~~~ 273 (319)
+.+|++.. .++.|.+|+.+ .+.+.++ ..+...+..++++|+|+.++++. .+++|.+||
T Consensus 382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l------~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL------QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE------ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE------EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 67888875 67999999964 5677777 44445678899999998777765 257999999
Q ss_pred C-CCceE-Eee--cccCCCCCCCCCcceEEEccCCc-EEEEe----CCCCeEEeC
Q psy13998 274 P-DGQFL-RAF--GCWGSGDGEFKGLEGVAVMSNGN-ILVCD----RENHRIQVF 319 (319)
Q Consensus 274 ~-~g~~~-~~~--~~~~~~~~~~~~~~~l~~~~~g~-~~v~~----~~~~~i~v~ 319 (319)
. +++.. ..+ +.+.....+...+..++|+|+|+ ++++. +.++.|.||
T Consensus 456 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 456 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp TTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEE
T ss_pred CCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEE
Confidence 4 45444 332 11101123356799999999998 55553 247888886
No 154
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=148.84 Aligned_cols=245 Identities=12% Similarity=0.083 Sum_probs=177.3
Q ss_pred hhhccchhhhhhhhhh----cccccccCCCccchhccccceeeeecccCCCCCcC------CCCcceEEcCCCcEEEEeC
Q psy13998 5 SEAKNINSCFLLQTLL----VSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF------TWPRGIAVGPDNSIVVADS 74 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~g~~~~~~~ 74 (319)
.+.+|..+++++..+. ...|.+++++|++.++++++.+..+..|....++. ......+++++++++++++
T Consensus 47 V~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~ 126 (318)
T 4ggc_A 47 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGS 126 (318)
T ss_dssp EEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEe
Confidence 4678888888777664 45689999999999999999999988887765532 2233445666788999999
Q ss_pred CCCeEEEeccccccccceeeE-----EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccCCCCCCce
Q psy13998 75 SNHRVQVCFPHFDLKTNCVFL-----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPH 148 (319)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 148 (319)
.++.+++ |+..+..... +......+++.++++++++++.++.|++||. +++...... .....+...+.
T Consensus 127 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~v~ 200 (318)
T 4ggc_A 127 RSGHIHH----HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL--QTFTQHQGAVK 200 (318)
T ss_dssp TTSEEEE----EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS--EEECCCCSCEE
T ss_pred cCCceEe----eecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce--eeecccCCceE
Confidence 9999999 6665433222 3346678899999999999999999999993 333211100 00123345667
Q ss_pred eEEEeCCC-eEE--EEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEE--eCCCCeEE
Q psy13998 149 YIAVSNTN-RVI--VSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS--DSNNHRVQ 223 (319)
Q Consensus 149 ~l~~~~~g-~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~i~ 223 (319)
.+++.+++ .++ .+++.++.|++|+.... ...... .+...+..+.+.+++..+++ +..++.|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~------~~~~~~-------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAV-------DAHSQVCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp EEEECTTSTTEEEEEECTTTCEEEEEETTTC------CEEEEE-------ECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred EEEecCCCCcEEEEEecCCCCEEEEEecccc------cccccc-------cceeeeeeeeecccccceEEEEEcCCCEEE
Confidence 88888854 333 35667899999998753 222111 12344567888888765554 34789999
Q ss_pred EEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 224 IFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 224 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
+||. +++.+..+ .+|...+.+++|+|+|+++++++.|++|++|+.
T Consensus 268 iwd~~~~~~~~~l------~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 268 IWKYPTMAKVAEL------KGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EEETTTCCEEEEE------CCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 9995 67888888 677788999999999999999999999999994
No 155
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=4.8e-19 Score=141.75 Aligned_cols=223 Identities=16% Similarity=0.178 Sum_probs=154.8
Q ss_pred EEcCC-CcEEEEeCCCCeEEEeccccccccceeeEEe----cCceeeEEcCCCc-EEEEcCCCCeEEEEcC-CCcE-EEE
Q psy13998 62 AVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNS-IVVADSSNHRVQVFQS-DGTF-VGK 133 (319)
Q Consensus 62 ~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~-~~~~-~~~ 133 (319)
.|.++ +.+|++++.++.|.+ |+..+.+....+ ..+ +++++|+|+ +|++...++.|.+||. +++. ...
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISF----FSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEE----EETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEE----EeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 34444 457999999999999 888776655432 245 999999997 7777777889999994 5554 444
Q ss_pred ecCCCccCCCCCCcee-EEEeCCCeEEEEeCCC-C--EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998 134 FGSMGNKAGQLEHPHY-IAVSNTNRVIVSDSNN-H--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209 (319)
Q Consensus 134 ~~~~~~~~~~~~~~~~-l~~~~~g~~~~~~~~~-~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (319)
+.. ...+.. ++++|+|+++++...+ + .|.+||+.+. +.+..+. ....|.+++++|+
T Consensus 79 ~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~------~~~~~~~-------~~~~~~~~~~spd 138 (331)
T 3u4y_A 79 IQE-------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN------KFISTIP-------IPYDAVGIAISPN 138 (331)
T ss_dssp EEE-------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT------EEEEEEE-------CCTTEEEEEECTT
T ss_pred ccc-------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC------CeEEEEE-------CCCCccceEECCC
Confidence 421 134566 9999999877765554 3 8999998753 3333331 1245789999999
Q ss_pred Cc-EEEEeCCCCe-EEEEeCC--CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCce---EE
Q psy13998 210 NR-VIVSDSNNHR-VQIFDVN--GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQF---LR 280 (319)
Q Consensus 210 g~-~~v~~~~~~~-i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~~---~~ 280 (319)
|+ +|+++..++. |.+|+.+ +......... ......|.+++++|+|+ +|+++..++.|.+|+. +++. +.
T Consensus 139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~ 215 (331)
T 3u4y_A 139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQEF---ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN 215 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE---ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred CCEEEEEecCCCceEEEEEECCCCcEeecCCcc---ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee
Confidence 95 7777777677 9999854 3332110000 11223578999999997 7888888999999995 5666 55
Q ss_pred eecccCCCCCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 281 AFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
.+. ....|.+++++|||+ +|++...++.|.+|
T Consensus 216 ~~~-------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~ 248 (331)
T 3u4y_A 216 AVG-------TNNLPGTIVVSRDGSTVYVLTESTVDVFNF 248 (331)
T ss_dssp EEE-------CSSCCCCEEECTTSSEEEEECSSEEEEEEE
T ss_pred ecc-------CCCCCceEEECCCCCEEEEEEcCCCEEEEE
Confidence 552 235689999999999 67777777778765
No 156
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.85 E-value=4.8e-19 Score=145.22 Aligned_cols=245 Identities=15% Similarity=0.137 Sum_probs=156.1
Q ss_pred ccccCCCccchhccccceeeeecccCCCCC-------cCCCCcceEEcCCCcEE-EEeCCCC-eEEEeccccccccceee
Q psy13998 24 IGQVGTTPRSQYLQKRRLQFKIGSRGSEPG-------CFTWPRGIAVGPDNSIV-VADSSNH-RVQVCFPHFDLKTNCVF 94 (319)
Q Consensus 24 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~g~~~-~~~~~~~-~v~~~~~~~~~~~~~~~ 94 (319)
...+++++++.++........+..++...+ ....+. ++++++++.+ +++...+ .|.+ ++.......
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~----~d~~~~~~~ 207 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYV----YMKASGWAP 207 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEE----EEGGGTTCE
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEE----EEcCCCcee
Confidence 345666777776554433222222222211 134566 9999999854 4444333 8888 665433321
Q ss_pred E--------EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCce-eEEEeC-CCeEEEEeC
Q psy13998 95 L--------AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPH-YIAVSN-TNRVIVSDS 163 (319)
Q Consensus 95 ~--------~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~g~~~~~~~ 163 (319)
. ....|.+++++| ++.+|++. .+++|++|+.++.....+............|. +++++| ++.+|+++.
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d-~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVD-SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEEC-TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEE-CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 1 335789999999 67888865 47899999965543333311100011112345 999999 689999999
Q ss_pred CCCEEEEEecCCceeeecCce-eeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-CCCeEEEEe-CCCCEEEEeCCCC-
Q psy13998 164 NNHRVQIFDVNGRVFQSDGTF-VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NNHRVQIFD-VNGRVITSFGSEG- 239 (319)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~i~~~~-~~~~~~~~~~~~~- 239 (319)
.+++|++|+.++......+.. ...+.........+..|.+++++++|++|+++. .+++|++|+ .+|......+...
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~ 366 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV 366 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC
Confidence 999999999887532211110 000000001123367899999999999999999 999999999 6665544333211
Q ss_pred --C-----CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 240 --S-----EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 240 --~-----~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
. ....+..|.+|+++++|++|+++..+++|+.++.
T Consensus 367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0 1124678999999999999999999999999874
No 157
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.85 E-value=1.3e-18 Score=138.92 Aligned_cols=232 Identities=14% Similarity=0.112 Sum_probs=166.6
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE---ecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEE
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA---FTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFV 131 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~ 131 (319)
..|.+++++ ++++|++...++.|.+ +|..+.+.... ...|.++++++++++|++...++.|.+||. +++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~v----iD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFA----IDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEE----EETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEE----EECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 457888885 5789999988899999 88887766554 358899999888999999877899999994 55666
Q ss_pred EEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998 132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 210 (319)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (319)
..+.... ..+....|.++++ .++++|++.. .++.|.++|+.+. +++..+.. ...|.+++++++|
T Consensus 119 ~~i~~g~-~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~------~~~~~i~~-------g~~p~~i~~~~dG 183 (328)
T 3dsm_A 119 GYIECPD-MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD------KVVDELTI-------GIQPTSLVMDKYN 183 (328)
T ss_dssp EEEECTT-CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT------EEEEEEEC-------SSCBCCCEECTTS
T ss_pred EEEEcCC-ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC------eEEEEEEc-------CCCccceEEcCCC
Confidence 5554321 1223347788998 5789999987 4889999998753 33333321 2357889999999
Q ss_pred cEEEEeCCC----------CeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC-Cc
Q psy13998 211 RVIVSDSNN----------HRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD-GQ 277 (319)
Q Consensus 211 ~~~v~~~~~----------~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~-g~ 277 (319)
++|++...+ +.|+++|+. ++....+... ....|.+++++|+++ +|++.. .|.+||.. ++
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-----~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~ 255 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-----LGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADR 255 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-----TTCCCEEEEECTTSCEEEEESS---SEEEEETTCSS
T ss_pred CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-----CCCCceeEEEecCCCEEEEEcc---EEEEEECCCCc
Confidence 999998765 789999975 5554454211 123689999999875 566554 89999964 44
Q ss_pred eEEeecccCCCCCCCCCcceEEEcc-CCcEEEEe----CCCCeEEeC
Q psy13998 278 FLRAFGCWGSGDGEFKGLEGVAVMS-NGNILVCD----RENHRIQVF 319 (319)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~v~~----~~~~~i~v~ 319 (319)
..... .. ......|.+++++| ++++|+++ ..++.|.+|
T Consensus 256 ~~~~~-~~---~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 256 VPVRP-FL---EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp CCSSC-SB---CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred eeeee-ee---cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 32111 00 11246799999998 67799999 778888875
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.8e-18 Score=139.34 Aligned_cols=241 Identities=14% Similarity=0.208 Sum_probs=154.3
Q ss_pred ccccccCCCccchhccccce--eeeecccCCC----------CCcCCCCcceEEcCCCc-EEEEeCCCCeEEEecccccc
Q psy13998 22 SGIGQVGTTPRSQYLQKRRL--QFKIGSRGSE----------PGCFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDL 88 (319)
Q Consensus 22 ~~i~~~~~~~~~~~l~~~~~--~~~~~~~~~~----------~~~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~ 88 (319)
.....++++|+++++..... ...+..|... ..+...|.+++++|+|+ +++++..++.|.+ |++
T Consensus 40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v----~~~ 115 (347)
T 3hfq_A 40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV----MKI 115 (347)
T ss_dssp SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE----EEE
T ss_pred CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE----EEe
Confidence 45667889999984433321 2333333221 12346899999999998 5555557899999 777
Q ss_pred ccceee---EEec-------------CceeeEEcCCCcEEEEcCCCCeEEEEcC--CCcEEEEecCCCccCCCCCCceeE
Q psy13998 89 KTNCVF---LAFT-------------WPRGIAVGPDNSIVVADSSNHRVQVFQS--DGTFVGKFGSMGNKAGQLEHPHYI 150 (319)
Q Consensus 89 ~~~~~~---~~~~-------------~~~~l~~~~~g~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 150 (319)
...+.. ..+. .+.+++++|+|++|+++..++.|.+|+. +++........ ......|..+
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~---~~~g~~p~~~ 192 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT---MEAGFGPRHL 192 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE---CCTTCCEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE---cCCCCCCceE
Confidence 532222 2221 3667999999998888888899999994 45433221100 1112467889
Q ss_pred EEeCCCe-EEEEeCCCCEEEEEecCCceeeecCce--eeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEe
Q psy13998 151 AVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTF--VGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFD 226 (319)
Q Consensus 151 ~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~ 226 (319)
+++|+|+ +|+++..++.+.+|+++.. .+++ +...............+.+++++|+|+ +|++...++.|.+|+
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQ----TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETT----TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCC----CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 9999997 6777888899999987631 1111 111111111011124578899999997 567777789999999
Q ss_pred CC--CC--EEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEE--cC-CCceE
Q psy13998 227 VN--GR--VITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIF--TP-DGQFL 279 (319)
Q Consensus 227 ~~--~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~--~~-~g~~~ 279 (319)
.+ +. .+..+ ..+...|.+++|+|+|+ +|+++..++.|.+| +. +|++.
T Consensus 269 ~~~~g~~~~~~~~------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 269 VTADGHLTLIQQI------STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ECGGGCEEEEEEE------ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ECCCCcEEEeEEE------ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 64 32 22233 22234688999999997 66777777999999 54 35543
No 159
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.85 E-value=2e-18 Score=133.93 Aligned_cols=219 Identities=11% Similarity=0.107 Sum_probs=164.7
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcCC-CCeEEEEcCCCc
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADSS-NHRVQVFQSDGT 129 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~-~~~i~~~~~~~~ 129 (319)
..+++++++|+|+++++ .++.|.. ++. +++.+..+. .+.++.+.++|+++++... ++++..++++|+
T Consensus 37 ~~~~~~~~~pdG~ilvs--~~~~V~~----~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk 109 (276)
T 3no2_A 37 WECNSVAATKAGEILFS--YSKGAKM----ITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGE 109 (276)
T ss_dssp CCCCEEEECTTSCEEEE--CBSEEEE----ECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSC
T ss_pred CCCcCeEECCCCCEEEe--CCCCEEE----ECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCC
Confidence 35889999999999884 4678999 777 455555443 3456788899999999877 789999999999
Q ss_pred EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998 130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209 (319)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (319)
.+..+........+...+..+++.++|+++++...++.|..||.+| +.+..+... ..|.++...++
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G-------~~~w~~~~~-------~~~~~~~~~~~ 175 (276)
T 3no2_A 110 VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG-------QLLNSVKLS-------GTPFSSAFLDN 175 (276)
T ss_dssp EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTS-------CEEEEEECS-------SCCCEEEECTT
T ss_pred EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCC-------CEEEEEECC-------CCccceeEcCC
Confidence 9888754322122334566788899999999999999999999876 444444321 34667888899
Q ss_pred CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC----------CCCEEEEEcCCCce
Q psy13998 210 NRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS----------GNNRIQIFTPDGQF 278 (319)
Q Consensus 210 g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~----------~~~~i~~~~~~g~~ 278 (319)
|++++++..+++|+.+|++ |+.+.++.........+..|.+++..++|++|++++ .+.++..++++|+.
T Consensus 176 g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~ 255 (276)
T 3no2_A 176 GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV 255 (276)
T ss_dssp SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE
T ss_pred CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE
Confidence 9999999888899999987 999988853322122455688999999999999984 24568888999999
Q ss_pred EEeecccCCCCCCCCCcceEE
Q psy13998 279 LRAFGCWGSGDGEFKGLEGVA 299 (319)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~ 299 (319)
+.++.. ...+..+++++
T Consensus 256 ~W~~~~----~~~~~~~~~~~ 272 (276)
T 3no2_A 256 VWQLND----KVKFGMISTIC 272 (276)
T ss_dssp EEEECC----TTTSCCCCEEE
T ss_pred EEEecC----cccccceeeee
Confidence 988854 34455666654
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=6.2e-19 Score=142.08 Aligned_cols=235 Identities=13% Similarity=0.119 Sum_probs=156.6
Q ss_pred cceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCc-EEEEcCCCCeEEEEcC-CCcEE
Q psy13998 59 RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNS-IVVADSSNHRVQVFQS-DGTFV 131 (319)
Q Consensus 59 ~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~-~~~~~~~~~~i~~~~~-~~~~~ 131 (319)
.++++++++++|++++.++.|.+ |+..+......+. .+..++++|+|+ +|++...++.|.+||. +++..
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHV----VDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEE----EETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEE----EECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 46788889999999999999999 8887766554332 478999999986 6778778899999994 56666
Q ss_pred EEecCCCccCCCCCCceeEEEeCCCeEEEEeCC------------CCEEEEEecCCceeeecCceeeeecccCCcCCCCC
Q psy13998 132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE 199 (319)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (319)
..+............+.+++++|+|+.+++... ++.|.+||+.+... .+.+..+ ....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~-------~~~~ 148 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVRTF-------PMPR 148 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSEEE-------ECCS
T ss_pred EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceeeec-------cCCC
Confidence 555322100000134788999999976665553 38999999874210 0111111 1122
Q ss_pred CceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCc------------------c-----------------
Q psy13998 200 HPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEE------------------G----------------- 243 (319)
Q Consensus 200 ~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~------------------~----------------- 243 (319)
.+.+++++|+|++|+++ +.|++||. +++....+....... .
T Consensus 149 ~~~~~~~s~dg~l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 225 (349)
T 1jmx_B 149 QVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 225 (349)
T ss_dssp SCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred cccceeECCCCcEEEcc---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence 46788999999966642 34999996 566655553221000 0
Q ss_pred ---------------------------cccCcceEEEcC-CCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCC
Q psy13998 244 ---------------------------QLKFPRGVAVDD-QGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKG 294 (319)
Q Consensus 244 ---------------------------~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~ 294 (319)
....+.+++++| +|+++++. ++.|.+||. +++.+..+. ....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-------~~~~ 296 (349)
T 1jmx_B 226 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-------LDHT 296 (349)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-------CSSC
T ss_pred ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-------CCCC
Confidence 001345677889 98766666 789999995 566666652 2235
Q ss_pred cceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 295 LEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 295 ~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+.+++++|||+.+++++.++.|++|
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~ 321 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVF 321 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEE
T ss_pred ccceEECCCCCEEEEecCCCeEEEE
Confidence 7899999999855556778899887
No 161
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.84 E-value=5.3e-20 Score=149.29 Aligned_cols=250 Identities=13% Similarity=0.066 Sum_probs=170.3
Q ss_pred hhhhhhhhhh--cccccccCCCcc---chhccccceeeeecccCCCC----------CcCCCCcceEEcCCCcEEEEeCC
Q psy13998 11 NSCFLLQTLL--VSGIGQVGTTPR---SQYLQKRRLQFKIGSRGSEP----------GCFTWPRGIAVGPDNSIVVADSS 75 (319)
Q Consensus 11 ~~~~~~~~~~--~~~i~~~~~~~~---~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~g~~~~~~~~ 75 (319)
.+...+..+. ...|.+++|+|+ +.+++++..+..+..|+... +|...+.+++|+|+++++++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 3334444443 678999999999 58999988777777665432 34577899999999999999999
Q ss_pred CCeEEEeccccccccceeeE---EecCceeeEE--cCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCc----------
Q psy13998 76 NHRVQVCFPHFDLKTNCVFL---AFTWPRGIAV--GPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGN---------- 139 (319)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~--~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~---------- 139 (319)
++.|++ |+..+..... +...+.++++ +++++++++++.++.|++|| .+++.+..+.....
T Consensus 107 dg~v~i----wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3mmy_A 107 DKTAKM----WDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM 182 (368)
T ss_dssp TSEEEE----EETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTE
T ss_pred CCcEEE----EEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCe
Confidence 999999 8887666554 2336788999 88999999999999999999 55554443321110
Q ss_pred -------------------------cCCCCCCceeEEEeCCC----eEEEEeCCCCEEEEEecCCceeeecCceeeeecc
Q psy13998 140 -------------------------KAGQLEHPHYIAVSNTN----RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS 190 (319)
Q Consensus 140 -------------------------~~~~~~~~~~l~~~~~g----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 190 (319)
..........+++.++. ..+++++.++.|.+|+++..... .....+..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~---~~~~~~~~ 259 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA---KDNFTFKC 259 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH---HHSEEEEC
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc---ccceeeee
Confidence 00011122333443322 23777888888999988753100 11111110
Q ss_pred cC------CcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEe
Q psy13998 191 MG------NKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGD 263 (319)
Q Consensus 191 ~~------~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~ 263 (319)
.. ....+...+.+++++|+++++++++.++.|++||.. ++.+..+ ..+...+.+++|+|+|.+++++
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS------EQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC------CCCSSCEEEEEECTTSSCEEEE
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe------cCCCCCceEEEECCCCCeEEEE
Confidence 00 001122257889999999999999999999999964 5666666 4556678999999999999998
Q ss_pred CCCCEEEEEc
Q psy13998 264 SGNNRIQIFT 273 (319)
Q Consensus 264 ~~~~~i~~~~ 273 (319)
+.++....|+
T Consensus 334 s~d~~~~~~~ 343 (368)
T 3mmy_A 334 SSYDWSKGHE 343 (368)
T ss_dssp ECCCSTTCGG
T ss_pred eccccccccc
Confidence 8776444444
No 162
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.84 E-value=9.1e-18 Score=134.69 Aligned_cols=226 Identities=17% Similarity=0.214 Sum_probs=165.3
Q ss_pred cceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE---EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEe
Q psy13998 59 RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKF 134 (319)
Q Consensus 59 ~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (319)
.+.+..+++.++++. ...|+. +++....... .+..|.++++++ ++.+|+++...++|..++.++.....+
T Consensus 37 ~C~~~~~~~~ll~~~--~~~I~~----i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 37 SCKALGPEPVLLFAN--RIDIRQ----VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp CEEESSSCCEEEEEC--BSCEEE----ECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cccccccCceeEeec--ccceEE----EeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 344445544455553 345777 5554332222 345789999996 567999999999999999777544333
Q ss_pred cCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcE
Q psy13998 135 GSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRV 212 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 212 (319)
. ......|.++++++ .+++|+++...+.|.+++++|.. ...+. ......|.+++++| ++.+
T Consensus 111 ~-----~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-------~~~l~-----~~~l~~P~~iavdp~~g~l 173 (349)
T 3v64_C 111 V-----STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-------RKVLL-----WQSLEKPRAIALHPMEGTI 173 (349)
T ss_dssp E-----CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEE-----CTTCSCEEEEEEETTTTEE
T ss_pred E-----eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-------eEEEE-----eCCCCCcceEEEecCcCeE
Confidence 2 22345789999997 78999999999999999988742 11111 23456799999997 6789
Q ss_pred EEEeCCC-CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC-CCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCC
Q psy13998 213 IVSDSNN-HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDG 290 (319)
Q Consensus 213 ~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 290 (319)
|+++... +.|++++++|.....+. ...+..|.+|++++ ++++|+++...++|..++.+|...+.+. ..
T Consensus 174 y~td~~~~~~I~r~~~dG~~~~~~~-----~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~-----~~ 243 (349)
T 3v64_C 174 YWTDWGNTPRIEASSMDGSGRRIIA-----DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI-----SQ 243 (349)
T ss_dssp EEEECSSSCEEEEEETTSCSCEESC-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CS
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEE-----ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEE-----eC
Confidence 9999887 99999999987665552 23456799999997 4689999999999999998886554442 23
Q ss_pred CCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998 291 EFKGLEGVAVMSNGNILVCDRENHRIQV 318 (319)
Q Consensus 291 ~~~~~~~l~~~~~g~~~v~~~~~~~i~v 318 (319)
....|.+|+++ ++.+|+++..+++|..
T Consensus 244 ~~~~P~giav~-~~~ly~td~~~~~V~~ 270 (349)
T 3v64_C 244 GLPHPFAITVF-EDSLYWTDWHTKSINS 270 (349)
T ss_dssp SCSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CCCCceEEEEE-CCEEEEecCCCCeEEE
Confidence 35689999994 6789999999888764
No 163
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=7.4e-18 Score=135.40 Aligned_cols=262 Identities=17% Similarity=0.234 Sum_probs=161.6
Q ss_pred cccccccCCCccchhcccccee-eeecccCCC--CCc---------CCCCcceEEcCCCc-EEEEeCCCCeEEEeccccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRLQ-FKIGSRGSE--PGC---------FTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFD 87 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~~~--~~~---------~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~ 87 (319)
...+..++++|++.++...... ..+..|... .+. ...|.+++++|+|+ +++++..++.|.+ |+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~----~d 112 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV----TR 112 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEE----EE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEE----EE
Confidence 3467788899999876654432 333332211 111 13789999999998 5566667899999 77
Q ss_pred cc---cceeeEE---ecCceeeEEcCCCc-EEEEcCCCCeEEEEcC-C-CcEEEEe--cCCCccCCCCCCceeEEEeCCC
Q psy13998 88 LK---TNCVFLA---FTWPRGIAVGPDNS-IVVADSSNHRVQVFQS-D-GTFVGKF--GSMGNKAGQLEHPHYIAVSNTN 156 (319)
Q Consensus 88 ~~---~~~~~~~---~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~-~-~~~~~~~--~~~~~~~~~~~~~~~l~~~~~g 156 (319)
.. +...... ...+.+++++|+++ +|+++..++.|.+|+. . ++..... ... ......|.+++++|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TVEGAGPRHMVFHPNE 189 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CSTTCCEEEEEECTTS
T ss_pred CCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc---cCCCCCcceEEECCCC
Confidence 73 2222222 23678999999997 5555557889999994 3 5443211 000 1122467889999999
Q ss_pred e-EEEEeCCCCEEEEEecCCceeeecCce--eeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC--CC
Q psy13998 157 R-VIVSDSNNHRVQIFDVNGRVFQSDGTF--VGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN--GR 230 (319)
Q Consensus 157 ~-~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~--~~ 230 (319)
+ +|+++..++.+.+|+++.. .+++ ................+.+++++|+|+ +|++...++.|.+|+.+ +.
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~ 265 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDP----HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS 265 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCT----TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred CEEEEEeCCCCEEEEEEecCC----CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence 7 5677778899999998531 1111 111111111112234567899999985 55677788999999965 22
Q ss_pred ---EEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEc--CCCceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998 231 ---VITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG 304 (319)
Q Consensus 231 ---~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g 304 (319)
.+..+ ... ..|.+++++|+|+ +|+++..++.|.+|+ .....+..+... . ....|.+++|.++.
T Consensus 266 ~~~~~~~~------~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~---~-~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 266 VLSKEGFQ------PTE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY---A-VGQGPMWVVVNAHE 334 (343)
T ss_dssp CEEEEEEE------ECS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE---E-CSSSCCEEEEEEEC
T ss_pred ceEEeeee------cCC-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc---c-cCCCCeeEEEEccc
Confidence 22222 112 2388999999997 555555789999995 333222222111 1 12468899998764
No 164
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.83 E-value=1.4e-17 Score=129.11 Aligned_cols=194 Identities=16% Similarity=0.182 Sum_probs=145.9
Q ss_pred ecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecC
Q psy13998 97 FTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN 174 (319)
Q Consensus 97 ~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~ 174 (319)
...|.+++++++ +.+|+++..++.|.+++.++.....+. ......|.++++++ .+++|+++...++|.+++++
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-----~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~ 109 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-----RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-----CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-----ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence 346789999985 679999999999999997776433332 12346789999998 57999999999999999987
Q ss_pred CceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCC--CCeEEEEeCCCCEEEEeCCCCCCcccccCcceE
Q psy13998 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN--NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGV 251 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (319)
+.. ...+. ......|.++++++ .+++|+++.. .+.|++++.++.....+. ......|.++
T Consensus 110 g~~-------~~~~~-----~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~-----~~~~~~P~gi 172 (267)
T 1npe_A 110 GTQ-------RRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-----QDNLGLPNGL 172 (267)
T ss_dssp SCS-------CEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-----CTTCSCEEEE
T ss_pred CCC-------EEEEE-----ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE-----ECCCCCCcEE
Confidence 632 11111 11245789999999 5789999876 579999998876544442 1234579999
Q ss_pred EEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 252 AVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 252 ~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+++++ +++|+++...++|.+++.++.....+. .....|.+|+++ ++.+|+++..+++|.++
T Consensus 173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~------~~~~~P~gi~~d-~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL------EGLQYPFAVTSY-GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTEEEEEEEE------ECCCSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEECCCCEEEEEecCCCceEEEe------cCCCCceEEEEe-CCEEEEEECCCCeEEEE
Confidence 99997 579999999999999998876554442 234568899987 57899999988888653
No 165
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.83 E-value=1.4e-18 Score=139.17 Aligned_cols=234 Identities=14% Similarity=0.128 Sum_probs=159.3
Q ss_pred CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEE
Q psy13998 58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGK 133 (319)
Q Consensus 58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 133 (319)
+.++++++++..++....++.++. |.. ..+. ....+.+++++++|++|+++..++.|.+|+.++.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQT----ITA---EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCE----EEC---EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cceeeecCCccceeEEeecccCcc----ccc---ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 466777777665555456667777 522 2222 23467899999999999998888999999965433333
Q ss_pred ecCCCccCCCCCCceeEEEeCCCeEEEEeCCC----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998 134 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209 (319)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (319)
+. ......|.+++++++|++|++...+ +.|.+|+.++... ...... ......+.+++++++
T Consensus 81 ~~-----~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~------~~~~~~----~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 81 PF-----VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL------QDIIED----LSTAYCIDDMVFDSK 145 (333)
T ss_dssp EE-----ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC------EEEECS----SSSCCCEEEEEECTT
T ss_pred Ee-----eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE------EEEEcc----CccCCcccceEECCC
Confidence 21 1123568999999999999998766 6899999876421 111110 112346889999999
Q ss_pred CcEEEEeCC------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC--CCceEE
Q psy13998 210 NRVIVSDSN------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP--DGQFLR 280 (319)
Q Consensus 210 g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~--~g~~~~ 280 (319)
|++|++... .+.|++++.++.....+ ......+.+++++|+|+ +|+++..++.|.+|+. +|+.+.
T Consensus 146 g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~ 219 (333)
T 2dg1_A 146 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 219 (333)
T ss_dssp SCEEEEECCCBTTBCCEEEEEECTTSCCEEEE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred CCEEEEeccccccCCCceEEEEeCCCCEEEEe------ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc
Confidence 999998864 46899999765433333 22344688999999986 8888888899999996 454433
Q ss_pred eecccC-CCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 281 AFGCWG-SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 281 ~~~~~~-~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.+.... ........|.+++++++|++|++...++.|.+|
T Consensus 220 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 220 PFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVF 259 (333)
T ss_dssp EEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred cccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 221000 000112468999999999999998877888765
No 166
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.83 E-value=1.5e-17 Score=135.36 Aligned_cols=225 Identities=17% Similarity=0.206 Sum_probs=164.3
Q ss_pred ceEEcCCCcEEEEeCCCCeEEEeccccccccceee---EEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEec
Q psy13998 60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF---LAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFG 135 (319)
Q Consensus 60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~ 135 (319)
+.+..+.+.++++. ...|+. +++...... ..+..|.++++++ ++.+|+++...++|.+++.++.....+.
T Consensus 81 C~~~~~~~~l~~~~--~~~I~~----i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 81 CKALGPEPVLLFAN--RIDIRQ----VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp EEECSSCCEEEEEC--BSCEEE----ECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred ECCccccceeEeec--Ccccee----eccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 44444444444443 356777 666433322 2456789999996 5679999999999999998776544442
Q ss_pred CCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEE
Q psy13998 136 SMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVI 213 (319)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 213 (319)
......|.++++++ .+++|+++...+.|.++++++.. ...+. ...+..|.+++++| .+.+|
T Consensus 155 -----~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-------~~~l~-----~~~l~~P~giavdp~~g~ly 217 (386)
T 3v65_B 155 -----STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-------RKVLL-----WQSLEKPRAIALHPMEGTIY 217 (386)
T ss_dssp -----CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-------CEEEE-----CSSCSCEEEEEEETTTTEEE
T ss_pred -----eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-------eEEee-----cCCCCCCcEEEEEcCCCeEE
Confidence 22345789999997 78999999999999999887642 11111 23456799999997 56899
Q ss_pred EEeCCC-CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCC
Q psy13998 214 VSDSNN-HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291 (319)
Q Consensus 214 v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~ 291 (319)
+++... +.|++++++|.....+. ...+..|.+|+++++ +++|+++...++|..++.+|...+.+. ...
T Consensus 218 ~td~~~~~~I~r~~~dG~~~~~~~-----~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-----~~~ 287 (386)
T 3v65_B 218 WTDWGNTPRIEASSMDGSGRRIIA-----DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI-----SQG 287 (386)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEE-----CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE-----CSS
T ss_pred EeccCCCCEEEEEeCCCCCcEEEE-----ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE-----ECC
Confidence 999887 89999999886655542 234567999999964 689999999999999998876554442 233
Q ss_pred CCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998 292 FKGLEGVAVMSNGNILVCDRENHRIQV 318 (319)
Q Consensus 292 ~~~~~~l~~~~~g~~~v~~~~~~~i~v 318 (319)
...|.+|+++ ++.+|+++..+++|..
T Consensus 288 ~~~P~giav~-~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 288 LPHPFAITVF-EDSLYWTDWHTKSINS 313 (386)
T ss_dssp CSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CCCceEEEEE-CCEEEEeeCCCCeEEE
Confidence 5689999994 5689999999888864
No 167
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.83 E-value=8.7e-18 Score=134.80 Aligned_cols=214 Identities=16% Similarity=0.174 Sum_probs=161.4
Q ss_pred CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCC
Q psy13998 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDG 128 (319)
Q Consensus 55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~ 128 (319)
+..|.+|++++ ++.+|+++...+.|.. +++....... .+..|.++++++ .+++|+++...+.|.+++.+|
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r----~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILR----ANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEE----EETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEeccccEEEEEeccCCceEE----EecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 46789999996 6779999999999999 7765433222 345789999997 568999999999999999888
Q ss_pred cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 129 TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
.....+. ......|.+++++| ++.+|+++... ++|.+++++|.. ...+. ......|.+|++
T Consensus 148 ~~~~~l~-----~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-------~~~~~-----~~~~~~PnGla~ 210 (349)
T 3v64_C 148 AHRKVLL-----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-------RRIIA-----DTHLFWPNGLTI 210 (349)
T ss_dssp CSCEEEE-----CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-------CEESC-----CSSCSCEEEEEE
T ss_pred CceEEEE-----eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-------cEEEE-----ECCCCCcceEEE
Confidence 7544442 23456789999998 67999999887 999999988632 11111 123567999999
Q ss_pred cC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998 207 SN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC 284 (319)
Q Consensus 207 ~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~ 284 (319)
++ ++++|+++...++|.+++.+|...+.+. ......|.+|+++ ++.+|+++...++|..++ .+|+.+..+.
T Consensus 211 d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~-----~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~- 283 (349)
T 3v64_C 211 DYAGRRMYWVDAKHHVIERANLDGSHRKAVI-----SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR- 283 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE-
T ss_pred eCCCCEEEEEECCCCEEEEEeCCCCceEEEE-----eCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec-
Confidence 96 6689999999999999999876544442 2235679999995 579999999999999999 6787766662
Q ss_pred cCCCCCCCCCcceEEEc
Q psy13998 285 WGSGDGEFKGLEGVAVM 301 (319)
Q Consensus 285 ~~~~~~~~~~~~~l~~~ 301 (319)
.....|.+|++.
T Consensus 284 -----~~~~~p~gi~v~ 295 (349)
T 3v64_C 284 -----NKLHFPMDIHTL 295 (349)
T ss_dssp -----CSCSCCCCEEEE
T ss_pred -----cCCCCCceEEEE
Confidence 334456666653
No 168
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.8e-17 Score=130.98 Aligned_cols=227 Identities=19% Similarity=0.273 Sum_probs=156.5
Q ss_pred cCCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeE--EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcE
Q psy13998 54 CFTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF 130 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~ 130 (319)
.+..+.+.+++++|+ +++++..++.|.. |+........ ....+.+++++++|++|++...++.|.+|+.+++.
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~----~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~ 118 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLG----WREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQA 118 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEE----EETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEE----EeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCCE
Confidence 356788999999998 8888988999999 7663221111 22367899999999999998877899999987775
Q ss_pred EEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-----------------CCCEEEEEecCCceeeecCceeeeecccCC
Q psy13998 131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------------NNHRVQIFDVNGRVFQSDGTFVGKFGSMGN 193 (319)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (319)
........ ......|.+++++++|++|+++. ..+.|..++..+. ++.. .
T Consensus 119 ~~~~~~~~--~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g------~~~~-~----- 184 (305)
T 3dr2_A 119 HLLVGRYA--GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS------PLQR-M----- 184 (305)
T ss_dssp EEEECEET--TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC------CCEE-E-----
T ss_pred EEEEeccC--CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC------cEEE-E-----
Confidence 43322111 11235678999999999999842 1356777877432 2111 1
Q ss_pred cCCCCCCceeEEEcCCCc-EEEEeCC-----CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC
Q psy13998 194 KAGQLEHPHYIAVSNTNR-VIVSDSN-----NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN 267 (319)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~-~~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~ 267 (319)
. ....|.+++++|+++ +|+++.. .+.|++|+.++..+....... ......|.+++++++|++|++. .+
T Consensus 185 -~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~--~~~~~~pdgi~~d~~G~lwv~~--~~ 258 (305)
T 3dr2_A 185 -A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA--SVPDGLPDGFCVDRGGWLWSSS--GT 258 (305)
T ss_dssp -E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE--CCSSSCCCSEEECTTSCEEECC--SS
T ss_pred -e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE--ECCCCCCCeEEECCCCCEEEec--CC
Confidence 1 234688999999996 7787775 378999996543221110000 1122457899999999999887 34
Q ss_pred EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeC
Q psy13998 268 RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDR 311 (319)
Q Consensus 268 ~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~ 311 (319)
.|.+|+++|+.+..+. ... .+.+++|+++++ +|++..
T Consensus 259 gv~~~~~~g~~~~~~~------~~~-~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 259 GVCVFDSDGQLLGHIP------TPG-TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EEEEECTTSCEEEEEE------CSS-CCCEEEECTTSCEEEEEET
T ss_pred cEEEECCCCCEEEEEE------CCC-ceeEEEEeCCCCEEEEEcC
Confidence 6999999999888873 222 589999998886 666664
No 169
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.82 E-value=1e-17 Score=136.33 Aligned_cols=214 Identities=16% Similarity=0.175 Sum_probs=162.4
Q ss_pred CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE----EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCC
Q psy13998 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL----AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDG 128 (319)
Q Consensus 55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~ 128 (319)
+..|.+|++++ ++.+|+++...+.|.. +++....... .+..|.++++++ .+++|+++...++|.+++.+|
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r----~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILR----ANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEE----EETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEE----EecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 56789999996 6779999999999999 7765443222 345789999997 568999999999999999887
Q ss_pred cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 129 TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
.....+. ......|.+++++| .+.+|+++... +.|.+++++|.. ...+. ......|.+|++
T Consensus 191 ~~~~~l~-----~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-------~~~~~-----~~~~~~PnGlav 253 (386)
T 3v65_B 191 AHRKVLL-----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-------RRIIA-----DTHLFWPNGLTI 253 (386)
T ss_dssp CSCEEEE-----CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-------CEEEE-----CSSCSCEEEEEE
T ss_pred CceEEee-----cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-------cEEEE-----ECCCCCeeeEEE
Confidence 6544432 23456899999997 67899999887 899999988642 11111 123567999999
Q ss_pred cC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecc
Q psy13998 207 SN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGC 284 (319)
Q Consensus 207 ~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~ 284 (319)
++ ++++|+++...+.|.+++.+|...+.+. ......|.+|+++ .+.+|+++...++|..++ .+|+.+..+
T Consensus 254 d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-----~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i-- 325 (386)
T 3v65_B 254 DYAGRRMYWVDAKHHVIERANLDGSHRKAVI-----SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII-- 325 (386)
T ss_dssp EGGGTEEEEEETTTTEEEEECTTSCSCEEEE-----CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE--
T ss_pred eCCCCEEEEEECCCCEEEEEeCCCCeeEEEE-----ECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE--
Confidence 96 5689999999999999998876544442 2235679999994 568999999999999999 688777766
Q ss_pred cCCCCCCCCCcceEEEc
Q psy13998 285 WGSGDGEFKGLEGVAVM 301 (319)
Q Consensus 285 ~~~~~~~~~~~~~l~~~ 301 (319)
......|.+|++.
T Consensus 326 ----~~~~~~p~gi~v~ 338 (386)
T 3v65_B 326 ----RNKLHFPMDIHTL 338 (386)
T ss_dssp ----ECSCSCCCCEEEE
T ss_pred ----ccCCCCCceEEEE
Confidence 2344567777664
No 170
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.82 E-value=6.3e-19 Score=144.38 Aligned_cols=238 Identities=6% Similarity=-0.010 Sum_probs=150.3
Q ss_pred cccCCCccchhccccceeeeecccC-------------CCCCcCCCCcceEEcC--------CCcEEEEeCCCCeEEEec
Q psy13998 25 GQVGTTPRSQYLQKRRLQFKIGSRG-------------SEPGCFTWPRGIAVGP--------DNSIVVADSSNHRVQVCF 83 (319)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~--------~g~~~~~~~~~~~v~~~~ 83 (319)
....+++++.++++++.+.++.+|+ ...||...|.+|+|+| +|+++++++.|++|++
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~-- 170 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII-- 170 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE--
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE--
Confidence 3344667777888887777666663 3467889999999987 7899999999999999
Q ss_pred cccccccceeeE----EecCceeeEEcCCC-cEEEEcCCCCeEEEEc-CCCcEEEEecCC-------------------C
Q psy13998 84 PHFDLKTNCVFL----AFTWPRGIAVGPDN-SIVVADSSNHRVQVFQ-SDGTFVGKFGSM-------------------G 138 (319)
Q Consensus 84 ~~~~~~~~~~~~----~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~-------------------~ 138 (319)
||+.+.+... +...+.+++|+|++ +++++++.++.|++|| ..++........ .
T Consensus 171 --Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 171 --WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp --EEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred --EECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 9887665443 23467899999987 5888999999999999 444332221100 0
Q ss_pred ccCCCCCCceeEEEe-CCCeEEEEeCCCCEEEEEecCCceeeec-----Ccee-eeecccCCcCCCCCCceeEEEcC--C
Q psy13998 139 NKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSD-----GTFV-GKFGSMGNKAGQLEHPHYIAVSN--T 209 (319)
Q Consensus 139 ~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~ 209 (319)
...++...+..+.+. ++++.+++++.++.+++||+........ +... ..+..............+..+.+ +
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM 328 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence 112344566788887 6899999999999999999864321000 0000 00000000001111222334443 3
Q ss_pred CcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998 210 NRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT 273 (319)
Q Consensus 210 g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~ 273 (319)
+.++++++.++.|++||. .++..... ..+...+.+++|+|+|+++++++.+ .+.+|.
T Consensus 329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~------~~~~~~V~svafspdG~~LA~as~~-Gv~lvr 386 (393)
T 4gq1_A 329 DYFATAHSQHGLIQLINTYEKDSNSIP------IQLGMPIVDFCWHQDGSHLAIATEG-SVLLTR 386 (393)
T ss_dssp TEEEEEETTTTEEEEEETTCTTCCEEE------EECSSCEEEEEECTTSSEEEEEESS-EEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEe------cCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEE
Confidence 456677888999999996 45554444 3344568999999999999998765 465555
No 171
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=3.4e-17 Score=131.20 Aligned_cols=223 Identities=13% Similarity=0.146 Sum_probs=150.8
Q ss_pred cEEEEeCCCCeEEEeccccccccceeeEEec------CceeeEEcCCCc-EEEEcCCCCeEEEEc-CCCcEEEEecCCCc
Q psy13998 68 SIVVADSSNHRVQVCFPHFDLKTNCVFLAFT------WPRGIAVGPDNS-IVVADSSNHRVQVFQ-SDGTFVGKFGSMGN 139 (319)
Q Consensus 68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~g~-~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~ 139 (319)
+++++++.++.|.+ |+..+.+....+. .|.+++++|+|+ +|++...++.|.+|| .+++.+..+.....
T Consensus 2 ~~~v~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVV----IDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEE----EETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred cEEEEcCCCCeEEE----EECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence 47888889999999 8887766655332 488999999985 678888889999999 56777666542210
Q ss_pred cCCCCCCceeEEEeCCCeEEEEeC------------CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998 140 KAGQLEHPHYIAVSNTNRVIVSDS------------NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207 (319)
Q Consensus 140 ~~~~~~~~~~l~~~~~g~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (319)
..+...+.+++++|+|+.+++.. .++.|.+||+.+. +.+..+.. ...+.+++++
T Consensus 78 -~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~------~~~~~~~~-------~~~~~~~~~s 143 (337)
T 1pby_B 78 -EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL------SRRKAFEA-------PRQITMLAWA 143 (337)
T ss_dssp -TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT------EEEEEEEC-------CSSCCCEEEC
T ss_pred -ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC------cEEEEEeC-------CCCcceeEEC
Confidence 00112578899999996555443 4689999998753 33333321 1346789999
Q ss_pred CCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCC--CC-----c-------------------------------------
Q psy13998 208 NTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEG--SE-----E------------------------------------- 242 (319)
Q Consensus 208 ~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~--~~-----~------------------------------------- 242 (319)
|+|+.+++. ++.|++||.. ++....+.... .. .
T Consensus 144 ~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 144 RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 999744444 5789999964 44444432211 00 0
Q ss_pred ----------------ccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998 243 ----------------GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 243 ----------------~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 305 (319)
.+...+.+++++|+|+++++. ++.|.+||. +++.+..+. ....+.+++++|||+
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~ 292 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-------LPHSYYSVNVSTDGS 292 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-------CSSCCCEEEECTTSC
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-------CCCceeeEEECCCCC
Confidence 000134568999999766665 689999995 466666652 224689999999999
Q ss_pred EEEEeCCCCeEEeC
Q psy13998 306 ILVCDRENHRIQVF 319 (319)
Q Consensus 306 ~~v~~~~~~~i~v~ 319 (319)
++++++.++.|++|
T Consensus 293 ~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 293 TVWLGGALGDLAAY 306 (337)
T ss_dssp EEEEESBSSEEEEE
T ss_pred EEEEEcCCCcEEEE
Confidence 66666778999886
No 172
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.82 E-value=4e-17 Score=128.98 Aligned_cols=230 Identities=16% Similarity=0.129 Sum_probs=159.2
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceee--EEecCceeeEEcCCCcEEEEcCCC--CeEEEEc-CCCcE
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF--LAFTWPRGIAVGPDNSIVVADSSN--HRVQVFQ-SDGTF 130 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~~~~~--~~i~~~~-~~~~~ 130 (319)
..|.+++++++|++|+++..+++|.. ++....... .....|.+++++++|++|+++... ..|..++ .+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~----~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVS----ITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEE----ECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEE----ECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 57899999999999999988999999 766432211 112368999999999999988543 3588887 56665
Q ss_pred EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc---eeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998 131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR---VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207 (319)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (319)
....... ....+.+++..+++.+|+++...+.|+++|..+. .....+.. ...........|+++ +
T Consensus 108 ~~~~~~~-----~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~-----~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 108 ETLLTLP-----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML-----ARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEEEECT-----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG-----SCSSTTCCSCSEEEE--E
T ss_pred EEEEeCC-----CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcc-----ccccccCCCCcCCCc--C
Confidence 4333221 1244577777777888999888899999998642 11001100 000112334578888 6
Q ss_pred CCC-cEEEEeCCCCeEEEEeCCC--CE--EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEee
Q psy13998 208 NTN-RVIVSDSNNHRVQIFDVNG--RV--ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282 (319)
Q Consensus 208 ~~g-~~~v~~~~~~~i~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~ 282 (319)
+++ .+|+++...++|++|+.++ .. ...+ .....|.+|+++++|++|++....++|.+|+++|+.....
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-------~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~ 248 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-------VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIA 248 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-------EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-------eccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEe
Confidence 665 6999999999999999753 21 1111 1224689999999999999999999999999988774321
Q ss_pred cccCCCCCCCCCcceEEEc---cCC-cEEEEeCC
Q psy13998 283 GCWGSGDGEFKGLEGVAVM---SNG-NILVCDRE 312 (319)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~---~~g-~~~v~~~~ 312 (319)
.. ......|++++|. +|+ .+|++...
T Consensus 249 ~~----~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 249 QA----EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CG----GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ec----ccccCCceEEEEecccCCCCEEEEECCC
Confidence 11 2234679999998 785 48888765
No 173
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.82 E-value=2.6e-17 Score=130.35 Aligned_cols=203 Identities=20% Similarity=0.176 Sum_probs=151.8
Q ss_pred CCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccc----ce--eeE--EecCceeeEEcC-CCcEEEEcCCCCeEEEE
Q psy13998 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKT----NC--VFL--AFTWPRGIAVGP-DNSIVVADSSNHRVQVF 124 (319)
Q Consensus 55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~----~~--~~~--~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~ 124 (319)
+..|.++++++ ++++|+++..++.|.. ++... .. .+. .+..|.++++++ .+++|+++...++|.++
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~----~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~ 104 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICS----TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEE----EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEE----EECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEE
Confidence 57899999997 5679999999999999 76653 11 111 245789999996 56899999999999999
Q ss_pred cCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998 125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH 202 (319)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (319)
+.+|+....+. ......|.+++++| .+.+|+++... +.|.+++++|.. ...+. ......|.
T Consensus 105 ~~~g~~~~~~~-----~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-------~~~~~-----~~~~~~P~ 167 (316)
T 1ijq_A 105 DTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------IYSLV-----TENIQWPN 167 (316)
T ss_dssp ETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-------EEEEE-----CSSCSCEE
T ss_pred eCCCCceEEEE-----ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-------eEEEE-----ECCCCCce
Confidence 98887555442 12346889999998 67899998765 789999887642 22111 12356799
Q ss_pred eEEEcCC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEE
Q psy13998 203 YIAVSNT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLR 280 (319)
Q Consensus 203 ~~~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~ 280 (319)
+|+++++ +++|+++...++|.+++.+|...+.+... ...+..|.+|+++. +++|+++...++|..+++ +|+.+.
T Consensus 168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~---~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec---CCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCcceE
Confidence 9999974 68999999999999999987655444211 12356799999974 799999999999999995 677655
Q ss_pred ee
Q psy13998 281 AF 282 (319)
Q Consensus 281 ~~ 282 (319)
.+
T Consensus 244 ~i 245 (316)
T 1ijq_A 244 LL 245 (316)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.82 E-value=1.2e-17 Score=133.23 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=153.0
Q ss_pred CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---------CceeeEEcCCCcEEEEcC-CCCeEEEE
Q psy13998 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---------WPRGIAVGPDNSIVVADS-SNHRVQVF 124 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~g~~~~~~~-~~~~i~~~ 124 (319)
...|.+|+++++|++|++...++.|.+ +|..+......+. .|.++++ .++++|+++. .++.|.++
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~----iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~vi 157 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFI----INPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKI 157 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEE----EETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEE
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEE----EECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEE
Confidence 467999999889999999877899999 8887766554332 6788998 5678999986 48899999
Q ss_pred c-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC----------CEEEEEecCCceeeecCceeeeecccCC
Q psy13998 125 Q-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----------HRVQIFDVNGRVFQSDGTFVGKFGSMGN 193 (319)
Q Consensus 125 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (319)
| .+++.+..+.. ...|.+++++++|++|++...+ +.|.++|..+. ++...+..
T Consensus 158 D~~t~~~~~~i~~-------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~------~v~~~~~~--- 221 (328)
T 3dsm_A 158 DTETDKVVDELTI-------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF------TVEKQFKF--- 221 (328)
T ss_dssp ETTTTEEEEEEEC-------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT------EEEEEEEC---
T ss_pred ECCCCeEEEEEEc-------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC------eEEEEEec---
Confidence 9 55676666632 1357889999999999998765 78999998743 33333321
Q ss_pred cCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC-CCcEEEEe----CCCC
Q psy13998 194 KAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGD----SGNN 267 (319)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~----~~~~ 267 (319)
.....|.+++++|+++ +|++.. .|++||.....+.... ........|.+++++| ++++|+++ ..++
T Consensus 222 --~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~---~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~ 293 (328)
T 3dsm_A 222 --KLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRP---FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG 293 (328)
T ss_dssp --CTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSC---SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred --CCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeee---eecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence 1113689999999775 555543 8999997543221110 0011145799999998 67899999 7889
Q ss_pred EEEEEcCCCceEEeecccCCCCCCCCCcceEEEc
Q psy13998 268 RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVM 301 (319)
Q Consensus 268 ~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (319)
+|.+|+.+|+.+..+. ....|.++++-
T Consensus 294 ~V~v~d~~g~~~~~i~-------~G~~P~~~~~~ 320 (328)
T 3dsm_A 294 IVYRYSPQGKLIDEFY-------VGIIPGAFCWK 320 (328)
T ss_dssp EEEEECTTCCEEEEEE-------EEESEEEEEEE
T ss_pred EEEEECCCCCEEEEEE-------eccCcceEEEe
Confidence 9999998899988873 23457777663
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.82 E-value=1.2e-17 Score=131.49 Aligned_cols=193 Identities=19% Similarity=0.285 Sum_probs=141.9
Q ss_pred ecCceeeEEcCCCc-EEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998 97 FTWPRGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG 175 (319)
Q Consensus 97 ~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~ 175 (319)
+..+.+++++++|+ +|+++..++.|.+|+.++. ...+. .....|.+++++++|++|++...++.|.+|+...
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~------~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM------HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE------SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE------CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 45678999999997 8888888899999997766 55553 2335689999999999999998889999999843
Q ss_pred ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-----------------CCCeEEEEeCCCCEEEEeCCC
Q psy13998 176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------------NNHRVQIFDVNGRVITSFGSE 238 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-----------------~~~~i~~~~~~~~~~~~~~~~ 238 (319)
. ++....... .......|.+++++++|++|+++. ..+.|+.++.+++....
T Consensus 100 g------~~~~~~~~~--~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~---- 167 (296)
T 3e5z_A 100 G------EWESIADSF--EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP---- 167 (296)
T ss_dssp C------CEEEEECEE--TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE----
T ss_pred C------cEEEEeecc--CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEe----
Confidence 2 221111100 011234578899999999999853 24589999987654433
Q ss_pred CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC--CCce---EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998 239 GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP--DGQF---LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN 313 (319)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~--~g~~---~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~ 313 (319)
......|.+++++|+|++++++..++.|++|+. +|+. ...+ . .....|.+|+++++|++|++. +
T Consensus 168 ---~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-----~~~~~p~~i~~d~~G~l~v~~--~ 236 (296)
T 3e5z_A 168 ---IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-----VEPGKTDGLRVDAGGLIWASA--G 236 (296)
T ss_dssp ---ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-----CSSSCCCSEEEBTTSCEEEEE--T
T ss_pred ---ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-----CCCCCCCeEEECCCCCEEEEc--C
Confidence 234557899999999987799999999999995 4554 2333 1 234568999999999999988 6
Q ss_pred CeEEeC
Q psy13998 314 HRIQVF 319 (319)
Q Consensus 314 ~~i~v~ 319 (319)
+.|.+|
T Consensus 237 ~~v~~~ 242 (296)
T 3e5z_A 237 DGVHVL 242 (296)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 667665
No 176
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.81 E-value=1.2e-17 Score=137.58 Aligned_cols=215 Identities=13% Similarity=0.078 Sum_probs=148.6
Q ss_pred cCCCCcceEEcCCCcEEEEeCCCC---eEEEeccccccccceeeEEe---cCceeeEEcCCCcEEE-EcCCC--CeEEEE
Q psy13998 54 CFTWPRGIAVGPDNSIVVADSSNH---RVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVV-ADSSN--HRVQVF 124 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~-~~~~~--~~i~~~ 124 (319)
|...+.+++|+|+|+.++..+.++ .|++ |++.+.....-. ..+.+++|+|+|+.++ +...+ ..|++|
T Consensus 177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~----~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~ 252 (415)
T 2hqs_A 177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVI----QTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 252 (415)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEE----EETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCcceeeEEcCCCCEEEEEEecCCCcEEEE----EECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence 346788999999999888776654 9999 888765543321 2467899999998544 65544 459999
Q ss_pred cCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-CC--EEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998 125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-NH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP 201 (319)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (319)
|..+.....+ ..+...+..++|+|+|+.++..+. ++ .|.+|++.+. +. ..+ ..+....
T Consensus 253 d~~~~~~~~l------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~------~~-~~l------~~~~~~~ 313 (415)
T 2hqs_A 253 DLASGQIRQV------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG------AP-QRI------TWEGSQN 313 (415)
T ss_dssp ETTTCCEEEC------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS------CC-EEC------CCSSSEE
T ss_pred ECCCCCEEeC------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC------CE-EEE------ecCCCcc
Confidence 9544333444 223356788999999986665443 34 7888888753 21 111 1122345
Q ss_pred eeEEEcCCCcEEEEeCC---CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC---EEEEEcCC
Q psy13998 202 HYIAVSNTNRVIVSDSN---NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN---RIQIFTPD 275 (319)
Q Consensus 202 ~~~~~~~~g~~~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~---~i~~~~~~ 275 (319)
..++++|+|++++.... ...|++||.++.....+ ..+. .+.+++|+|+|++++.++.++ .|++|+.+
T Consensus 314 ~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l------~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL------SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC------CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe------cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 67899999987665543 35899999765444444 2222 678899999998776666555 89999988
Q ss_pred CceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998 276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNG 304 (319)
Q Consensus 276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g 304 (319)
|+..+.+ ..+...+.+++|+|.-
T Consensus 387 g~~~~~l------~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 387 GRFKARL------PATDGQVKFPAWSPYL 409 (415)
T ss_dssp SCCEEEC------CCSSSEEEEEEECCCC
T ss_pred CCcEEEe------eCCCCCCcCCcccccc
Confidence 8888877 5677789999999864
No 177
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=3.6e-17 Score=132.67 Aligned_cols=247 Identities=12% Similarity=0.120 Sum_probs=152.0
Q ss_pred CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccc-cceeeE--Ee---cCceeeEEcCCCcE-E-EEcC----------
Q psy13998 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK-TNCVFL--AF---TWPRGIAVGPDNSI-V-VADS---------- 116 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~-~~~~~~--~~---~~~~~l~~~~~g~~-~-~~~~---------- 116 (319)
...|..++++|+|+++++.+.+ .|.+ |+.. ++.... .. ..|..++++|+|+. + ++..
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~----~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSS----FAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEE----EEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEE----EEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccce
Confidence 3578999999999966665555 8999 7775 443322 11 24677999999983 3 3432
Q ss_pred ---CCCeEEEEcC--CCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecC-CceeeecCceeeeec
Q psy13998 117 ---SNHRVQVFQS--DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN-GRVFQSDGTFVGKFG 189 (319)
Q Consensus 117 ---~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~ 189 (319)
.++.+.+|+. +|+....+.... ..+...+.+++++|+|+ +|+++..++.|.+|+++ +..+. .+....
T Consensus 114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~----~~~~~~ 187 (365)
T 1jof_A 114 FYKFAGYGNVFSVSETGKLEKNVQNYE--YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE----LVGSVD 187 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEEEEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE----EEEEEE
T ss_pred eecCCceEEEEccCCCCcCcceEeeEE--eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE----EeeeEe
Confidence 5788999984 566544332110 01235689999999996 55566667899999986 22111 111111
Q ss_pred ccCCcCCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeC---CCCEEE---EeCCCCCC-ccccc------CcceEE-Ec
Q psy13998 190 SMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDV---NGRVIT---SFGSEGSE-EGQLK------FPRGVA-VD 254 (319)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~---~~~~~~---~~~~~~~~-~~~~~------~~~~i~-~~ 254 (319)
. ..+...|.+++++|+|+ +|++...++.|.+|+. +|+... .+...... .++.. .+.+++ ++
T Consensus 188 ~----~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s 263 (365)
T 1jof_A 188 A----PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT 263 (365)
T ss_dssp C----SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC
T ss_pred c----CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC
Confidence 0 11235689999999996 4566666789999864 355432 22111100 11111 478899 99
Q ss_pred CCCc-EEEEeCCCC-----EEEEEcC--CCceEEeecccCCCCCCCCCcceEEEcc---CCcEEEEe-CCCCeEEeC
Q psy13998 255 DQGY-ISVGDSGNN-----RIQIFTP--DGQFLRAFGCWGSGDGEFKGLEGVAVMS---NGNILVCD-RENHRIQVF 319 (319)
Q Consensus 255 ~~g~-~~v~~~~~~-----~i~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~---~g~~~v~~-~~~~~i~v~ 319 (319)
|||+ +|+++...+ .|.+|+. +|+........ ..+...+.+++++| ||++++++ ..++.|++|
T Consensus 264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~---~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS---PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE---ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee---ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence 9997 455554444 8999984 46644321000 12334688899999 78855544 456889886
No 178
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.81 E-value=1.1e-16 Score=126.72 Aligned_cols=212 Identities=18% Similarity=0.138 Sum_probs=155.0
Q ss_pred CeEEEeccccccccceee---EEecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCC----cEEEEecCCCccCCCCCCce
Q psy13998 77 HRVQVCFPHFDLKTNCVF---LAFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDG----TFVGKFGSMGNKAGQLEHPH 148 (319)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 148 (319)
..|+. +++.+.... ..+..|.++++++. +.+|+++..+++|..++.++ .....+. ......|.
T Consensus 10 ~~I~~----i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-----~~~~~~p~ 80 (316)
T 1ijq_A 10 HEVRK----MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRDIQAPD 80 (316)
T ss_dssp SSEEE----EETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----CSSCSCCC
T ss_pred CeEEE----EECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-----eCCCCCcC
Confidence 46777 666544322 24567899999975 57999999999999999766 2222221 22346789
Q ss_pred eEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCC-CeEEEE
Q psy13998 149 YIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIF 225 (319)
Q Consensus 149 ~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~-~~i~~~ 225 (319)
++++++ ++++|+++...+.|.++++++.. ...+. ......|.+++++| .+.+|+++... +.|+++
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~~-----~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~ 148 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK-------RKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 148 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSS-------EEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCc-------eEEEE-----ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEE
Confidence 999996 77999999999999999988642 11111 12346799999997 67899998765 899999
Q ss_pred eCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCC
Q psy13998 226 DVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG 304 (319)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g 304 (319)
+++|.....+. ...+..|.+|+++++ +++|+++...++|..++.+|...+.+... ......|.+|+++ ++
T Consensus 149 ~~dG~~~~~~~-----~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~---~~~~~~P~giav~-~~ 219 (316)
T 1ijq_A 149 GLNGVDIYSLV-----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVF-ED 219 (316)
T ss_dssp ETTSCCEEEEE-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEE-TT
T ss_pred cCCCCCeEEEE-----ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec---CCccCCcEEEEEE-CC
Confidence 99987766552 234568999999976 68999999999999999888655554321 1345679999997 47
Q ss_pred cEEEEeCCCCeEEe
Q psy13998 305 NILVCDRENHRIQV 318 (319)
Q Consensus 305 ~~~v~~~~~~~i~v 318 (319)
.+|+++..+++|..
T Consensus 220 ~ly~~d~~~~~V~~ 233 (316)
T 1ijq_A 220 KVFWTDIINEAIFS 233 (316)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCCeEEE
Confidence 89999998888865
No 179
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=99.80 E-value=3.7e-17 Score=129.11 Aligned_cols=201 Identities=14% Similarity=0.173 Sum_probs=153.2
Q ss_pred CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccce---ee--EEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCC
Q psy13998 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNC---VF--LAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSD 127 (319)
Q Consensus 55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~ 127 (319)
+..+.+|++++ ++++|+++...+.|.. ++..... .+ ..+..|.++++++ .+++|+++...++|.+++.+
T Consensus 34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r----~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d 109 (318)
T 3sov_A 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKR----TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 109 (318)
T ss_dssp EEEEEEEEEEGGGTEEEEEETTTTEEEE----EETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCccEEEEEEeCCCEEEEEECCCCcEEE----EEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence 35678899987 5789999999999999 6664332 11 1346899999996 57899999999999999988
Q ss_pred CcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998 128 GTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 205 (319)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (319)
|.....+. ......|.+++++| .|.+|+++.. .+.|.+++++|.. ...+. ......|++|+
T Consensus 110 G~~~~~l~-----~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-------~~~~~-----~~~l~~Pngla 172 (318)
T 3sov_A 110 GSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-------RFIII-----NSEIYWPNGLT 172 (318)
T ss_dssp SCSCEEEE-----CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-------CEEEE-----CSSCSCEEEEE
T ss_pred CCcEEEEE-----eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-------eEEEE-----ECCCCCccEEE
Confidence 86544442 23457899999998 6899999864 6899999988632 11111 12356799999
Q ss_pred EcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998 206 VSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF 282 (319)
Q Consensus 206 ~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~ 282 (319)
+++ ++++|+++...+.|.+++.+|...+.+. ......|.+++++. +.+|+++...++|..+++ +|+....+
T Consensus 173 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-----~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 173 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-----KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EeccCCEEEEEECCCCEEEEEcCCCCceEEEe-----cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 997 5689999999999999999876555542 23456799999974 589999999999999996 67765555
No 180
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=99.80 E-value=1e-16 Score=131.97 Aligned_cols=218 Identities=17% Similarity=0.222 Sum_probs=149.7
Q ss_pred cCCCCcceEEcCCCcEEEEeCCC----CeEEEeccccccccceeeEEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCC-
Q psy13998 54 CFTWPRGIAVGPDNSIVVADSSN----HRVQVCFPHFDLKTNCVFLAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSD- 127 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~- 127 (319)
.+..|.+|+++++|++|+++..+ ..+....+.-..........+..|.++++++ +|.+|+++..+++|++++.+
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~ 259 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT 259 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC
Confidence 45789999999999999998643 1233311110010012333567899999999 78999999999999999975
Q ss_pred CcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCc--eeeecCceeeeecccC-----CcCCCCC
Q psy13998 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR--VFQSDGTFVGKFGSMG-----NKAGQLE 199 (319)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~ 199 (319)
+.....+... +....+..++++++|+ +|+++...+.|.+++.++. .+.....+.......+ .....+.
T Consensus 260 g~~~~~~~~~----~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 335 (433)
T 4hw6_A 260 GTLTEEEVMM----DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLW 335 (433)
T ss_dssp CCEEEEEEEC----SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred CeEEEEEecc----CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEc
Confidence 6653333211 1123346799999986 9999999999999887631 1100000111111111 1123567
Q ss_pred CceeEEE---------cCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCC-----C------CcccccCcceEEEc-CCCc
Q psy13998 200 HPHYIAV---------SNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG-----S------EEGQLKFPRGVAVD-DQGY 258 (319)
Q Consensus 200 ~~~~~~~---------~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~i~~~-~~g~ 258 (319)
.|.++++ +++|++|+++..+++|++++++|......+... . ....+..|.+|+++ ++|+
T Consensus 336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~ 415 (433)
T 4hw6_A 336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC 415 (433)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred CCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE
Confidence 8999999 888999999999999999999886655554311 1 12357789999999 7899
Q ss_pred EEEEeCCCCEEEEEcCC
Q psy13998 259 ISVGDSGNNRIQIFTPD 275 (319)
Q Consensus 259 ~~v~~~~~~~i~~~~~~ 275 (319)
+||++..+++|+.++++
T Consensus 416 lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 416 FYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCEEEEEecC
Confidence 99999999999999854
No 181
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.79 E-value=1.3e-17 Score=147.69 Aligned_cols=273 Identities=10% Similarity=0.021 Sum_probs=168.7
Q ss_pred cccccccCCCccchhccccce-ee-----eecccCCCCCcC--------------------------------CCCcceE
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRL-QF-----KIGSRGSEPGCF--------------------------------TWPRGIA 62 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~-~~-----~~~~~~~~~~~~--------------------------------~~~~~v~ 62 (319)
...+..++|||++++++..+. +. .+..|+...+.. ..+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 345788999999998887655 43 455554433321 1268999
Q ss_pred EcCCCcEEEEeCCCCeEEEeccccccccc---eeeE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecC
Q psy13998 63 VGPDNSIVVADSSNHRVQVCFPHFDLKTN---CVFL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGS 136 (319)
Q Consensus 63 ~~~~g~~~~~~~~~~~v~~~~~~~~~~~~---~~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 136 (319)
|+|||+.++..+. +.|++ |+..+. .... +...+..++|+|||+.++..+ ++.|++|+..+.....+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~----~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYL----YDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp ECTTSSEEEEEET-TEEEE----EESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred ECCCCCEEEEEeC-CcEEE----EECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc
Confidence 9999998777665 89999 887655 2221 123568899999998666654 4589999965544443322
Q ss_pred CCccC---C--------CCCCceeEEEeCCCeEEEEeCCCC---------------------------------EEEEEe
Q psy13998 137 MGNKA---G--------QLEHPHYIAVSNTNRVIVSDSNNH---------------------------------RVQIFD 172 (319)
Q Consensus 137 ~~~~~---~--------~~~~~~~l~~~~~g~~~~~~~~~~---------------------------------~i~~~~ 172 (319)
.+... + ....+.+++|+|||+.++..+.++ .|.+||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 11000 0 011257899999998666554332 677777
Q ss_pred cCC-ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-----CCCeEEEEeCC-CCEEEEeCCCCCCcccc
Q psy13998 173 VNG-RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----NNHRVQIFDVN-GRVITSFGSEGSEEGQL 245 (319)
Q Consensus 173 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-----~~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 245 (319)
+.+ . +....... ..+...+..+++ |+|+.++... .+..|++||.. ++....+.... ....
T Consensus 270 ~~~~~------~~~~~~~~----~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~ 336 (741)
T 2ecf_A 270 PAEQA------QTQWIDLG----KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWV 336 (741)
T ss_dssp SSTTC------CCEEECCC----SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCC
T ss_pred CCCCC------ceEEecCC----CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcC
Confidence 664 3 21111100 123345678999 9998666432 25679999964 44443331110 0111
Q ss_pred cCcceEEEcCCCcEEEEeCCCC--EEEEEcCCCceEEeecccCCCCCCCCCcceE-EEccCCc-EEEEeCCCC--eEEeC
Q psy13998 246 KFPRGVAVDDQGYISVGDSGNN--RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGV-AVMSNGN-ILVCDRENH--RIQVF 319 (319)
Q Consensus 246 ~~~~~i~~~~~g~~~v~~~~~~--~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~~g~-~~v~~~~~~--~i~v~ 319 (319)
.....++|+|||++++++..++ .|+.++.+++ ...+ ..+...+..+ +|+|||+ +++++..++ .+++|
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l------~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 409 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL------THGNWSVDELLAVDEKAGLAYFRAGIESARESQIY 409 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES------CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee------eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence 1345789999999888888777 4555566676 6655 3444556676 5999997 556666655 67665
No 182
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.79 E-value=5.5e-17 Score=133.68 Aligned_cols=206 Identities=13% Similarity=0.075 Sum_probs=134.3
Q ss_pred CeEEEeccccccccceee--E-EecCceeeEEcCCCcEEEEcCCC---CeEEEEcC-CCcEEEEecCCCccCCCCCCcee
Q psy13998 77 HRVQVCFPHFDLKTNCVF--L-AFTWPRGIAVGPDNSIVVADSSN---HRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHY 149 (319)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~g~~~~~~~~~---~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 149 (319)
+.|++ |+....... . +...+.+++|+|+|+.++..+.+ ..|++||. +++.. .+. .+...+.+
T Consensus 159 ~~i~i----~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~------~~~~~~~~ 227 (415)
T 2hqs_A 159 YELRV----SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA------SFPRHNGA 227 (415)
T ss_dssp EEEEE----EETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE------CCSSCEEE
T ss_pred ceEEE----EcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee------cCCCcccC
Confidence 69999 777533221 1 33467889999999877666555 49999994 55554 331 22346789
Q ss_pred EEEeCCCeEEE-EeCCC--CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-CC--eEE
Q psy13998 150 IAVSNTNRVIV-SDSNN--HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-NH--RVQ 223 (319)
Q Consensus 150 l~~~~~g~~~~-~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-~~--~i~ 223 (319)
++|+|+|+.++ +.+.+ ..|++||+.+. +. ..+ ..+......++++|+|+.++..+. ++ .|+
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~------~~-~~l------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASG------QI-RQV------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTC------CE-EEC------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCC------CE-EeC------cCCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence 99999997555 66544 45999998753 22 122 223345678999999986554443 33 788
Q ss_pred EEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC---CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEE
Q psy13998 224 IFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG---NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAV 300 (319)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 300 (319)
+||.++.....+ ..+...+..++|+|+|++++..+. +..|++|+.++.....+ ..+. .+.+++|
T Consensus 295 ~~d~~~~~~~~l------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l------~~~~-~~~~~~~ 361 (415)
T 2hqs_A 295 KVNINGGAPQRI------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL------SSTF-LDETPSL 361 (415)
T ss_dssp EEETTSSCCEEC------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC------CCSS-SCEEEEE
T ss_pred EEECCCCCEEEE------ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe------cCCC-CcCCeEE
Confidence 889765444444 222234678999999986665553 35899999655444444 2232 7889999
Q ss_pred ccCCcEEEEeCCCC---eEEeC
Q psy13998 301 MSNGNILVCDRENH---RIQVF 319 (319)
Q Consensus 301 ~~~g~~~v~~~~~~---~i~v~ 319 (319)
+|||++++.++.++ .|.+|
T Consensus 362 spdg~~l~~~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 362 APNGTMVIYSSSQGMGSVLNLV 383 (415)
T ss_dssp CTTSSEEEEEEEETTEEEEEEE
T ss_pred cCCCCEEEEEEcCCCccEEEEE
Confidence 99999666655544 55554
No 183
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=3.6e-16 Score=126.64 Aligned_cols=230 Identities=13% Similarity=0.286 Sum_probs=137.7
Q ss_pred CCCeEEEecccccc--ccceeeE----EecCceeeEEcCCCcEEEEcCC----CCeEEEEc--CC-CcEEEEecCCCccC
Q psy13998 75 SNHRVQVCFPHFDL--KTNCVFL----AFTWPRGIAVGPDNSIVVADSS----NHRVQVFQ--SD-GTFVGKFGSMGNKA 141 (319)
Q Consensus 75 ~~~~v~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~~g~~~~~~~~----~~~i~~~~--~~-~~~~~~~~~~~~~~ 141 (319)
.++.|.+ |.. .++.... +...|..++++|+|+.+++... ++.|.+|+ .+ |+. ..+... .
T Consensus 25 ~~~~i~~----~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-~~~~~~---~ 96 (361)
T 3scy_A 25 NSKGIYT----FRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-HLLNTQ---K 96 (361)
T ss_dssp SCCEEEE----EEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE-EEEEEE---E
T ss_pred CCCCEEE----EEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE-EEeeEe---c
Confidence 4567888 544 2222111 4557889999999985444443 37898887 33 433 222111 1
Q ss_pred CCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce-eeecCceeeeecccC--CcCCCCCCceeEEEcCCCc-EEEEeC
Q psy13998 142 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV-FQSDGTFVGKFGSMG--NKAGQLEHPHYIAVSNTNR-VIVSDS 217 (319)
Q Consensus 142 ~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~-~~v~~~ 217 (319)
.+...|..+++ ....+|++...++.+.+|++.... +....... .....+ .......++.+++++|+|+ +|+++.
T Consensus 97 ~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 174 (361)
T 3scy_A 97 TMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVI-EFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL 174 (361)
T ss_dssp CSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE-ECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET
T ss_pred cCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeE-EccCCCCCccccCCCcceEEEECCCCCEEEEEeC
Confidence 12346788888 333567777788999999986321 10000000 010000 0112234578899999997 778888
Q ss_pred CCCeEEEEeCC--C-----C-EE-----EEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCCceEEeec
Q psy13998 218 NNHRVQIFDVN--G-----R-VI-----TSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDGQFLRAFG 283 (319)
Q Consensus 218 ~~~~i~~~~~~--~-----~-~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g~~~~~~~ 283 (319)
.++.|.+|+.+ + + .. .... ......|.+++|+|+|+ +|+++..++.|.+|+.+...+..+.
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFK-----VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-----CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEcCCCCcccccceeeccccccee-----cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence 88999999753 2 1 21 1111 12234578999999997 6777778999999995433222221
Q ss_pred ccCCCCCCCCCcceEEEccCCc-EEEEeCC-CCeEEeC
Q psy13998 284 CWGSGDGEFKGLEGVAVMSNGN-ILVCDRE-NHRIQVF 319 (319)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~-~~~i~v~ 319 (319)
.......+...+.+++|+|||+ +|+++.. ++.|++|
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 1111133445678999999998 5677776 7888886
No 184
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.79 E-value=1e-16 Score=130.84 Aligned_cols=204 Identities=20% Similarity=0.163 Sum_probs=153.7
Q ss_pred cCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccc------eeeE--EecCceeeEEcC-CCcEEEEcCCCCeEEE
Q psy13998 54 CFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTN------CVFL--AFTWPRGIAVGP-DNSIVVADSSNHRVQV 123 (319)
Q Consensus 54 ~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~------~~~~--~~~~~~~l~~~~-~g~~~~~~~~~~~i~~ 123 (319)
.+..|.+|++++ ++.+|+++...+.|+. +++... ..+. .+..|.++++++ .+++|+++...++|.+
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~----~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~ 185 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICS----TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 185 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEE----EEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEE----EEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEE
Confidence 357899999997 6779999999999999 666431 1111 345789999997 6789999999999999
Q ss_pred EcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998 124 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP 201 (319)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (319)
++.+|.....+. ......|.+|+++| .|.+|+++.. .+.|.+++++|.. ...+. ...+..|
T Consensus 186 ~~~~g~~~~~l~-----~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-------~~~~~-----~~~l~~P 248 (400)
T 3p5b_L 186 ADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------IYSLV-----TENIQWP 248 (400)
T ss_dssp ECTTTCSEEEEE-----ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-------CEEEE-----CSSCSCE
T ss_pred EeCCCCceEEEE-----eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-------cEEEE-----ECCCCce
Confidence 998887655443 22456799999998 6799999865 4789999888632 11111 2245689
Q ss_pred eeEEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceE
Q psy13998 202 HYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFL 279 (319)
Q Consensus 202 ~~~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~ 279 (319)
.+|++++ .+++|+++...+.|.+++.+|...+.+... ...+..|.+|+++ .+.+|+++...++|..++ .+|+.+
T Consensus 249 ~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~---~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 249 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC---SSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred EEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC---CCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence 9999996 568999999999999999988665554211 2345678999995 458999999999999999 677766
Q ss_pred Eee
Q psy13998 280 RAF 282 (319)
Q Consensus 280 ~~~ 282 (319)
..+
T Consensus 325 ~~i 327 (400)
T 3p5b_L 325 NLL 327 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 185
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=99.79 E-value=1.5e-16 Score=125.66 Aligned_cols=215 Identities=15% Similarity=0.178 Sum_probs=158.2
Q ss_pred EEEEeCCCCeEEEeccccccccce-----eeEEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEE--EEecCCCcc
Q psy13998 69 IVVADSSNHRVQVCFPHFDLKTNC-----VFLAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFV--GKFGSMGNK 140 (319)
Q Consensus 69 ~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~ 140 (319)
++++. ...|+. +++.... .+..+..+.++++++ ++.+|+++...++|..++.++... ..+
T Consensus 7 ll~~~--~~~I~~----i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~------ 74 (318)
T 3sov_A 7 LLYAN--RRDLRL----VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV------ 74 (318)
T ss_dssp EEEEC--EEEEEE----EETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE------
T ss_pred EEEEc--cCeEEE----EECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE------
Confidence 44443 467888 6654431 222456788999987 468999999999999999766521 111
Q ss_pred CCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCC
Q psy13998 141 AGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN 218 (319)
Q Consensus 141 ~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~ 218 (319)
......|.++++++ .+++|+++...+.|.+++++|.. ...+. ......|.+++++| .|.+|+++..
T Consensus 75 ~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-------~~~l~-----~~~~~~P~giavdp~~g~ly~td~~ 142 (318)
T 3sov_A 75 VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-------RKVLF-----WQELDQPRAIALDPSSGFMYWTDWG 142 (318)
T ss_dssp EECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEE-----CSSCSSEEEEEEEGGGTEEEEEECS
T ss_pred cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-------EEEEE-----eCCCCCccEEEEeCCCCEEEEEecC
Confidence 12345789999997 78999999999999999988742 11111 23456799999997 5789999864
Q ss_pred -CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcc
Q psy13998 219 -NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE 296 (319)
Q Consensus 219 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (319)
.+.|++++++|.....+. ...+..|.+|+++++ +++|+++...++|..++.+|...+.+. ......|.
T Consensus 143 ~~~~I~r~~~dG~~~~~~~-----~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-----~~~~~~P~ 212 (318)
T 3sov_A 143 EVPKIERAGMDGSSRFIII-----NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-----KGSLPHPF 212 (318)
T ss_dssp SSCEEEEEETTSCSCEEEE-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSCCSCEE
T ss_pred CCCEEEEEEcCCCCeEEEE-----ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-----cCCCCCce
Confidence 689999999886555442 234668999999984 689999999999999999886655553 23467899
Q ss_pred eEEEccCCcEEEEeCCCCeEEe
Q psy13998 297 GVAVMSNGNILVCDRENHRIQV 318 (319)
Q Consensus 297 ~l~~~~~g~~~v~~~~~~~i~v 318 (319)
+++++. +.+|+++..+++|..
T Consensus 213 glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 213 ALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp EEEEET-TEEEEEETTTTEEEE
T ss_pred EEEEeC-CEEEEEecCCCeEEE
Confidence 999974 578999998888864
No 186
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=8.1e-17 Score=132.65 Aligned_cols=218 Identities=16% Similarity=0.212 Sum_probs=150.1
Q ss_pred cCCCCcceEEcCCCc-EEEEeCCCC----eEEEeccccccccceeeEEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCC
Q psy13998 54 CFTWPRGIAVGPDNS-IVVADSSNH----RVQVCFPHFDLKTNCVFLAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSD 127 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~-~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~ 127 (319)
....|.+|+++++|+ +|+++..++ .+.+..++-.......+..+..|.+++++| +|.+|+++..+++|.+++.+
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 356799999999998 888887433 344422111111112333567899999999 78999999999999999987
Q ss_pred CcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCc--eeeecCceeeeecccC-----CcCCCCC
Q psy13998 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR--VFQSDGTFVGKFGSMG-----NKAGQLE 199 (319)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~ 199 (319)
+.....+.. ......|.+++++++|+ +|+++...+.|.+++.++. .+.....+....+..+ .....+.
T Consensus 257 ~~~~~~~~~----~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 332 (430)
T 3tc9_A 257 TQETTPLFT----IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH 332 (430)
T ss_dssp TTEEEEEEE----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS
T ss_pred CCcEEEEEE----cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeC
Confidence 665432211 11225689999999997 8999999999999887642 1100000111111111 1123467
Q ss_pred Cce-eEEEc--------CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCC-----C------CCcccccCcceEEEcC-CCc
Q psy13998 200 HPH-YIAVS--------NTNRVIVSDSNNHRVQIFDVNGRVITSFGSE-----G------SEEGQLKFPRGVAVDD-QGY 258 (319)
Q Consensus 200 ~~~-~~~~~--------~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~i~~~~-~g~ 258 (319)
.|. +++++ ++|.+|+++..+++|++++++|......+.. + .....+..|.+|++++ +|.
T Consensus 333 ~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~ 412 (430)
T 3tc9_A 333 APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEEREC 412 (430)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred CCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCE
Confidence 788 78884 5689999999999999999988665555431 1 1123467899999999 589
Q ss_pred EEEEeCCCCEEEEEcCC
Q psy13998 259 ISVGDSGNNRIQIFTPD 275 (319)
Q Consensus 259 ~~v~~~~~~~i~~~~~~ 275 (319)
+||++..+++|+.++++
T Consensus 413 lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 413 FFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEGGGTEEEEEEEC
T ss_pred EEEEECCCCeEEEEccC
Confidence 99999999999999864
No 187
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.79 E-value=2.1e-16 Score=129.07 Aligned_cols=218 Identities=17% Similarity=0.149 Sum_probs=158.6
Q ss_pred cEEEEeCCCCeEEEeccccccccceee---EEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCc-----EEEEecCCC
Q psy13998 68 SIVVADSSNHRVQVCFPHFDLKTNCVF---LAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGT-----FVGKFGSMG 138 (319)
Q Consensus 68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~ 138 (319)
-++++. ...|+. .++...... ..+..|.+|++++ ++.+|+++...++|+.++.++. ....+
T Consensus 85 ~ll~~~--~~~I~~----i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~---- 154 (400)
T 3p5b_L 85 YLFFTN--RHEVRK----MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---- 154 (400)
T ss_dssp EEEEEE--TTEEEE----ECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE----
T ss_pred eeEEec--cceeEE----EccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE----
Confidence 344443 368888 666543322 2456889999997 4679999999999999997662 22222
Q ss_pred ccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEe
Q psy13998 139 NKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSD 216 (319)
Q Consensus 139 ~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~ 216 (319)
......|.++++++ .+++|+++...+.|.+++++|... ..+. ...+..|.+|+++| .|.+|+++
T Consensus 155 --~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-------~~l~-----~~~~~~P~~iavdp~~g~ly~td 220 (400)
T 3p5b_L 155 --SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-------KTLF-----RENGSKPRAIVVDPVHGFMYWTD 220 (400)
T ss_dssp --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-------EEEE-----ECSSCCEEEEEEETTTTEEEEEE
T ss_pred --eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-------EEEE-----eCCCCCcceEEEecccCeEEEEe
Confidence 22446789999998 789999999999999999887421 1111 12356799999998 57899998
Q ss_pred CC-CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCC
Q psy13998 217 SN-NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKG 294 (319)
Q Consensus 217 ~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 294 (319)
.. .+.|++++++|.....+. ...+..|.+|+++++ +++|+++...++|..++.+|...+.+... ......
T Consensus 221 ~~~~~~I~~~~~dG~~~~~~~-----~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~---~~~l~~ 292 (400)
T 3p5b_L 221 WGTPAKIKKGGLNGVDIYSLV-----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAH 292 (400)
T ss_dssp CSSSCCEEEEETTSCSCEEEE-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC---SSTTSS
T ss_pred CCCCCEEEEEeCCCCccEEEE-----ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC---CCCCCC
Confidence 65 478999999987655542 234568999999975 68999999999999999988765555321 234567
Q ss_pred cceEEEccCCcEEEEeCCCCeEEe
Q psy13998 295 LEGVAVMSNGNILVCDRENHRIQV 318 (319)
Q Consensus 295 ~~~l~~~~~g~~~v~~~~~~~i~v 318 (319)
|.+|++. ++.+|+++...++|..
T Consensus 293 P~gl~v~-~~~lywtd~~~~~V~~ 315 (400)
T 3p5b_L 293 PFSLAVF-EDKVFWTDIINEAIFS 315 (400)
T ss_dssp EEEEEEE-TTEEEEEESSSCSEEE
T ss_pred CEEEEEe-CCEEEEecCCCCeEEE
Confidence 9999995 4589999988888764
No 188
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.78 E-value=7e-17 Score=128.21 Aligned_cols=193 Identities=18% Similarity=0.290 Sum_probs=139.6
Q ss_pred CCCcceEEcCC-CcEEEEeCCCCeEEEeccccccccceeeEEe----------cCceeeEEcCCCcEEEEcCCC------
Q psy13998 56 TWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----------TWPRGIAVGPDNSIVVADSSN------ 118 (319)
Q Consensus 56 ~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~g~~~~~~~~~------ 118 (319)
..|.+++++++ |++|++...+ .|.+ |+.. +. ...+ ..|.+++++++|++|+++..+
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~-~l~~----~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 143 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRL-GLLV----VQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 143 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTT-EEEE----EETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSC
T ss_pred CCCceEEEecCCCcEEEEECCC-CEEE----EeCC-CC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccc
Confidence 56899999999 9999988754 7888 6664 22 2222 357899999999999998755
Q ss_pred ---------CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEe----CCC-eEEEEeCCCCEEEEEecCC-ceeeecCc
Q psy13998 119 ---------HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS----NTN-RVIVSDSNNHRVQIFDVNG-RVFQSDGT 183 (319)
Q Consensus 119 ---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~g-~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 183 (319)
+.|..++.+++..... .....+.+++++ +++ .+|+++..++.|.+|+.+. ..... ..
T Consensus 144 ~~~~~~~~~~~l~~~~~~g~~~~~~-------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~-~~ 215 (314)
T 1pjx_A 144 YTRSMQEKFGSIYCFTTDGQMIQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-KK 215 (314)
T ss_dssp CCBTTSSSCEEEEEECTTSCEEEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-EE
T ss_pred ccccccCCCCeEEEECCCCCEEEec-------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc-ce
Confidence 6799999766654332 122457899999 988 5788888889999998641 11100 01
Q ss_pred eeeeecccCCcCCCC-CCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EE
Q psy13998 184 FVGKFGSMGNKAGQL-EHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-IS 260 (319)
Q Consensus 184 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~ 260 (319)
....+ .... ..|.+++++++|++|++...++.|.+|+++ ++....+ ......|.+++++++|+ +|
T Consensus 216 ~~~~~------~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~------~~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 216 VWGHI------PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI------RCPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp EEEEC------CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE------ECSSSCEEEEEECTTSSEEE
T ss_pred EEEEC------CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE------eCCCCCceeEEECCCCCEEE
Confidence 11111 1122 468899999999999998888899999987 6655555 22235689999999998 89
Q ss_pred EEeCCCCEEEEEcCC
Q psy13998 261 VGDSGNNRIQIFTPD 275 (319)
Q Consensus 261 v~~~~~~~i~~~~~~ 275 (319)
+++..++.|.+|+.+
T Consensus 284 v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 284 VTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEETTTTEEEEEECS
T ss_pred EEeCCCCeEEEEeCC
Confidence 998888999999964
No 189
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.78 E-value=4.5e-16 Score=124.08 Aligned_cols=226 Identities=12% Similarity=0.127 Sum_probs=153.9
Q ss_pred CCCcceEEcCC-CcEEEEeCCCCeEEEeccccccccceeeE--EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEE
Q psy13998 56 TWPRGIAVGPD-NSIVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFV 131 (319)
Q Consensus 56 ~~~~~v~~~~~-g~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~ 131 (319)
..+.+.+++++ +.+|+++..++.|.+ |+..+..... .-..+.+++++++|++|++. ...|.+||. +++..
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~----~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHE----LHLASGRKTVHALPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLT 122 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEE----EETTTTEEEEEECSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEE----EECCCCcEEEEECCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEE
Confidence 45678899996 668888888899999 7776543221 12367889999999988876 346999995 45543
Q ss_pred EEecCCCccCCCCCCceeEEEeCCCeEEEEeCC------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEE
Q psy13998 132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA 205 (319)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (319)
....... ......+.+++++++|++|++... .+.|..++ ++. +.... .....+.+++
T Consensus 123 ~~~~~~~--~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~-------~~~~~-------~~~~~~~~i~ 185 (326)
T 2ghs_A 123 LHAELES--DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGK-------VTKLF-------ADISIPNSIC 185 (326)
T ss_dssp EEECSST--TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTE-------EEEEE-------EEESSEEEEE
T ss_pred EEeeCCC--CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCc-------EEEee-------CCCcccCCeE
Confidence 3222110 111245789999999999987642 35677776 432 11111 1123578899
Q ss_pred EcCCCc-EEEEeCCCCeEEEEeCC---C-CE--EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCce
Q psy13998 206 VSNTNR-VIVSDSNNHRVQIFDVN---G-RV--ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQF 278 (319)
Q Consensus 206 ~~~~g~-~~v~~~~~~~i~~~~~~---~-~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~ 278 (319)
++++++ +|+++..++.|++|+.+ | .. ...+... ......|.+++++++|++|++...++.|.+|+++|+.
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~---~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~ 262 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS---TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNH 262 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC---TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCE
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC---CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCE
Confidence 999985 77888888999999963 4 21 0111000 1122357899999999999998878899999998888
Q ss_pred EEeecccCCCCCCCCCcceEEEc-cCCc-EEEEeCCC
Q psy13998 279 LRAFGCWGSGDGEFKGLEGVAVM-SNGN-ILVCDREN 313 (319)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~-~~g~-~~v~~~~~ 313 (319)
+..+. .....|.+++|+ ++++ +|++...+
T Consensus 263 ~~~i~------~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 263 IARYE------VPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEE------CSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEE------CCCCCcEEEEEecCCCCEEEEEecCC
Confidence 77773 334569999998 7865 77776654
No 190
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.77 E-value=3.2e-17 Score=145.23 Aligned_cols=240 Identities=8% Similarity=-0.027 Sum_probs=153.1
Q ss_pred CCCcceEEcCCCcEEEEeCC-CC-----eEEEeccccccccceeeEEec----------------------------Cce
Q psy13998 56 TWPRGIAVGPDNSIVVADSS-NH-----RVQVCFPHFDLKTNCVFLAFT----------------------------WPR 101 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~-~~-----~v~~~~~~~~~~~~~~~~~~~----------------------------~~~ 101 (319)
..+.+++|+|||+.+++.+. ++ .|++ |+..++.....+. .+.
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~----~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWS----YDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEE----EETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEE----EECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 56889999999998887776 77 8999 8887665443221 257
Q ss_pred eeEEcCCCcEEEEcCCCCeEEEEcCCCc---EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCcee
Q psy13998 102 GIAVGPDNSIVVADSSNHRVQVFQSDGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVF 178 (319)
Q Consensus 102 ~l~~~~~g~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 178 (319)
+++|+|||+.++.... +.|++|+..+. ....+ ..+...+..++|+|||+.++..+ ++.|.+|++.+...
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL------THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc------ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence 8999999987666554 89999995543 33333 22335678999999998777665 46899999876322
Q ss_pred eecCceeeeecccCC-c---------CCCCCCceeEEEcCCCcEEEEeCCCC----------------------------
Q psy13998 179 QSDGTFVGKFGSMGN-K---------AGQLEHPHYIAVSNTNRVIVSDSNNH---------------------------- 220 (319)
Q Consensus 179 ~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~g~~~v~~~~~~---------------------------- 220 (319)
......... . ......+.+++++|+|+.++....++
T Consensus 185 ------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 258 (741)
T 2ecf_A 185 ------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD 258 (741)
T ss_dssp ------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred ------EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence 111100000 0 00012246799999997655543322
Q ss_pred -----eEEEEeCCC-CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeC-----CCCEEEEEcC-CCceEEeecccCCC
Q psy13998 221 -----RVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS-----GNNRIQIFTP-DGQFLRAFGCWGSG 288 (319)
Q Consensus 221 -----~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~-----~~~~i~~~~~-~g~~~~~~~~~~~~ 288 (319)
.|++||.++ .....+... ..+...+..++| |||+.++... .+..|++||. +++....+....
T Consensus 259 ~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-- 332 (741)
T 2ecf_A 259 ANVQVKLGVISPAEQAQTQWIDLG---KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-- 332 (741)
T ss_dssp CCCEEEEEEECSSTTCCCEEECCC---SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--
T ss_pred CCCeeEEEEEECCCCCceEEecCC---CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--
Confidence 788888655 433333211 123445788999 9998666443 3568999995 455544442110
Q ss_pred CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 289 DGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
......+.+++|+|||++++++..++.+++|
T Consensus 333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~ 363 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLY 363 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEEEECTTSSCEEE
T ss_pred CCcCCcCCceEECCCCeEEEEecCCCccEEE
Confidence 0111135688999999988888888877765
No 191
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.77 E-value=2.6e-16 Score=137.80 Aligned_cols=216 Identities=19% Similarity=0.165 Sum_probs=160.4
Q ss_pred CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccc------eeeE--EecCceeeEEcCCC-cEEEEcCCCCeEEEE
Q psy13998 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTN------CVFL--AFTWPRGIAVGPDN-SIVVADSSNHRVQVF 124 (319)
Q Consensus 55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~------~~~~--~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~ 124 (319)
+..|.+|++++ ++++|+++...+.|+. +++... ..+. .+..|.+|++++.+ ++|+++...++|.++
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~----~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICS----TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEE----EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEE----EeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 57789999998 6779999999999998 666431 1111 34579999999765 799999999999999
Q ss_pred cCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998 125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH 202 (319)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (319)
+.+|+....+. ...+..|.+|++++ .|.+|+++... .+|.+.+++|.. ...+. ...+..|.
T Consensus 499 ~ldG~~~~~l~-----~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-------~~~lv-----~~~l~~P~ 561 (791)
T 3m0c_C 499 DTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------IYSLV-----TENIQWPN 561 (791)
T ss_dssp ETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-------EEEEE-----CSSCSCEE
T ss_pred eCCCCeEEEEE-----eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-------eEEEE-----eCCCCCce
Confidence 98887665553 23456799999998 58999999765 889999988742 22221 23456899
Q ss_pred eEEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEE
Q psy13998 203 YIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLR 280 (319)
Q Consensus 203 ~~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~ 280 (319)
+|++++ .+++|+++...+.|.+++.+|.....+... ...+..|.+|++.. +++|+++...++|..++ .+|+.+.
T Consensus 562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~---~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVN 637 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC---CCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceE
Confidence 999995 679999999999999999988765555211 23456788999865 48999999999999998 5776655
Q ss_pred eecccCCCCCCCCCcceEEEc
Q psy13998 281 AFGCWGSGDGEFKGLEGVAVM 301 (319)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~ 301 (319)
.+ ......|.+|++.
T Consensus 638 ~l------~~~l~~P~~i~v~ 652 (791)
T 3m0c_C 638 LL------AENLLSPEDMVLF 652 (791)
T ss_dssp EE------ECSCSCCCCEEEE
T ss_pred Ee------ecCCCCceeEeee
Confidence 55 2334456666553
No 192
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=2.2e-16 Score=129.87 Aligned_cols=216 Identities=18% Similarity=0.212 Sum_probs=151.0
Q ss_pred cCCCCcceEE-------cCCCc-EEEEeCCCC------eEEEecccccccc----c-----eeeEEecCceeeEEcC-CC
Q psy13998 54 CFTWPRGIAV-------GPDNS-IVVADSSNH------RVQVCFPHFDLKT----N-----CVFLAFTWPRGIAVGP-DN 109 (319)
Q Consensus 54 ~~~~~~~v~~-------~~~g~-~~~~~~~~~------~v~~~~~~~~~~~----~-----~~~~~~~~~~~l~~~~-~g 109 (319)
.+..|.+|++ +++|+ +|++...++ .|.+ ++... . ..+..+..|.+++++| ++
T Consensus 184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~----i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g 259 (496)
T 3kya_A 184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYI----IKRNADGTFDDRSDIQLIAAYKQCNGATIHPING 259 (496)
T ss_dssp SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEE----EECCTTSCCSTTSCEEEEEEESCCCCEEECTTTC
T ss_pred ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEE----EecCCCCceeecccceeeccCCCceEEEEcCCCC
Confidence 4667999999 99998 888887652 3666 42222 0 2334667899999999 57
Q ss_pred cEEEEcCCCCeEEEEcCC--------CcE-----------EEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEE
Q psy13998 110 SIVVADSSNHRVQVFQSD--------GTF-----------VGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQ 169 (319)
Q Consensus 110 ~~~~~~~~~~~i~~~~~~--------~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~ 169 (319)
.+|++...++.|++++.+ +.. ...+.. ......|.+|+++|+|+ +|+++...++|+
T Consensus 260 ~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~----~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ 335 (496)
T 3kya_A 260 ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT----IADPSWEFQIFIHPTGKYAYFGVINNHYFM 335 (496)
T ss_dssp CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE----CSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEe----cCCCCCceEEEEcCCCCEEEEEeCCCCEEE
Confidence 899999999999999954 432 112111 11234678999999997 799999999999
Q ss_pred EEecCCce--eeecCceeeeecccC-----CcCCCCCCce-eEEEc-------CCCcEEEEeCCCCeEEEEeCCCCEEEE
Q psy13998 170 IFDVNGRV--FQSDGTFVGKFGSMG-----NKAGQLEHPH-YIAVS-------NTNRVIVSDSNNHRVQIFDVNGRVITS 234 (319)
Q Consensus 170 ~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~-------~~g~~~v~~~~~~~i~~~~~~~~~~~~ 234 (319)
+++.++.. +.....+....+..+ .....+..|. +++++ ++|.+|+++..+++|++++++|.....
T Consensus 336 kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~Ti 415 (496)
T 3kya_A 336 RSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTY 415 (496)
T ss_dssp EEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEE
T ss_pred EEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEE
Confidence 98765421 100000111111111 1234677899 78886 678999999999999999999865554
Q ss_pred eCCC-----------CC------CcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCc
Q psy13998 235 FGSE-----------GS------EEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQ 277 (319)
Q Consensus 235 ~~~~-----------~~------~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~ 277 (319)
.+.. +. ....+..|.+|+++++ |.+||++..+++|+.++.++.
T Consensus 416 aG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 416 AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred ecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 4331 11 1235788999999997 999999999999999997664
No 193
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.76 E-value=1.5e-16 Score=140.57 Aligned_cols=277 Identities=10% Similarity=0.029 Sum_probs=159.7
Q ss_pred ccccccCCCccchhccccceeeeecccCCCCCcC--------C---CCcceEEcCCCcEEEEeCCC---------CeEEE
Q psy13998 22 SGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF--------T---WPRGIAVGPDNSIVVADSSN---------HRVQV 81 (319)
Q Consensus 22 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~---~~~~v~~~~~g~~~~~~~~~---------~~v~~ 81 (319)
.....++|+|++.++.+ +.+..+..|+...+.. . .+.+++|+|||+.++.++.+ +.+.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 44678899999998766 4455666665443321 1 38899999999987776543 78889
Q ss_pred eccccccccceeeEEec-------CceeeEEcCCCcEEEEcCCCCeEEEEcCC-CcEEEEecCCCccC------------
Q psy13998 82 CFPHFDLKTNCVFLAFT-------WPRGIAVGPDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKA------------ 141 (319)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-------~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~------------ 141 (319)
|+..+... ..+. .+..++|+|||+.++..+. +.|++|+.. ++............
T Consensus 96 ----~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 96 ----SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp ----EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred ----EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 88876554 2221 2567899999976655543 689999954 44443332110000
Q ss_pred CCCCCceeEEEeCCCeEEEEeCCCC----------------------------------EEEEEecCCceeeecCceeee
Q psy13998 142 GQLEHPHYIAVSNTNRVIVSDSNNH----------------------------------RVQIFDVNGRVFQSDGTFVGK 187 (319)
Q Consensus 142 ~~~~~~~~l~~~~~g~~~~~~~~~~----------------------------------~i~~~~~~~~~~~~~~~~~~~ 187 (319)
.....+.+++|+|||+.++..+.++ .|.+||+.+. +....
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~------~~~~~ 243 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP------THDLE 243 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS------CCCEE
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC------ceeEE
Confidence 0012347899999998776654221 5677776542 11111
Q ss_pred ecccCCcCCCCCCceeEEEcCCCcEEEEeC----CCCeEEEEeCC-CCEEEEeCCCCCCccccc-CcceEEEcCCCc-EE
Q psy13998 188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDS----NNHRVQIFDVN-GRVITSFGSEGSEEGQLK-FPRGVAVDDQGY-IS 260 (319)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~----~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~-~~ 260 (319)
+........+......++++|+|+++++.. .+..|++||.. ++....+.... ..... .+..++|+|||+ ++
T Consensus 244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~ 321 (723)
T 1xfd_A 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKDGRKFF 321 (723)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTTSCSEE
T ss_pred eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccCCCceEcCCCCeEE
Confidence 111000011123456789999998775542 23579999964 44443321100 00000 024789999997 44
Q ss_pred EE-eCCCC------EEEEEc-CCCce---EEeecccCCCCCCCCCcc-eEEEccCCcEE-EEeCCC--CeEEeC
Q psy13998 261 VG-DSGNN------RIQIFT-PDGQF---LRAFGCWGSGDGEFKGLE-GVAVMSNGNIL-VCDREN--HRIQVF 319 (319)
Q Consensus 261 v~-~~~~~------~i~~~~-~~g~~---~~~~~~~~~~~~~~~~~~-~l~~~~~g~~~-v~~~~~--~~i~v~ 319 (319)
++ ...++ .|++|+ .++.. ...+ ......+. .++|+|||+.+ +++..+ +.+++|
T Consensus 322 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 322 FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI------TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS------CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred EEEecccCCCcceeEEEEEeccCCCCccceeEe------ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 43 44555 688888 44443 3443 11122233 36899999854 455444 566665
No 194
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.76 E-value=1.3e-15 Score=133.36 Aligned_cols=212 Identities=18% Similarity=0.150 Sum_probs=155.9
Q ss_pred CCeEEEeccccccccceee---EEecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCc-----EEEEecCCCccCCCCCC
Q psy13998 76 NHRVQVCFPHFDLKTNCVF---LAFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGT-----FVGKFGSMGNKAGQLEH 146 (319)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~---~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~ 146 (319)
...|+. +++...... ..+..+.+|++++ ++.+|+++...++|+.++.++. ....+ ...+..
T Consensus 403 ~~~Ir~----i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi------~~~l~~ 472 (791)
T 3m0c_C 403 RHEVRK----MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI------SRDIQA 472 (791)
T ss_dssp BSSEEE----ECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE------CSSCSC
T ss_pred ccceeE----eeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE------ecCCCC
Confidence 356776 555433222 2456789999997 5689999999999999997663 22222 224567
Q ss_pred ceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCCC-CeEE
Q psy13998 147 PHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNN-HRVQ 223 (319)
Q Consensus 147 ~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~-~~i~ 223 (319)
|.+|++++. +++|+++...++|.+++++|.. ...+. ...+..|.+|+++|. |.+|+++... ++|.
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-------~~~l~-----~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~ 540 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-------RKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 540 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-------EEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCe-------EEEEE-----eCCCCCcceEEEecCCCCEEEecCCCCCeEE
Confidence 899999974 5999999999999999998742 21111 123467999999985 7899999765 8999
Q ss_pred EEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEcc
Q psy13998 224 IFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMS 302 (319)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (319)
+++++|.....+. ...+..|.+|++++. +++|+++...++|.+++.+|...+.+... ...+..|.+|++..
T Consensus 541 ~~~~dG~~~~~lv-----~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~---~~~l~~P~glav~~ 612 (791)
T 3m0c_C 541 KGGLNGVDIYSLV-----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFE 612 (791)
T ss_dssp EEETTSCCEEEEE-----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEET
T ss_pred EEecCCCceEEEE-----eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC---CCccCCCCEEEEeC
Confidence 9999997776653 334678999999964 68999999999999999988766655321 23456788999864
Q ss_pred CCcEEEEeCCCCeEEe
Q psy13998 303 NGNILVCDRENHRIQV 318 (319)
Q Consensus 303 ~g~~~v~~~~~~~i~v 318 (319)
+++|+++...++|..
T Consensus 613 -~~lYwtD~~~~~I~~ 627 (791)
T 3m0c_C 613 -DKVFWTDIINEAIFS 627 (791)
T ss_dssp -TEEEEEETTTTEEEE
T ss_pred -CEEEEEECCCCEEEE
Confidence 489999999888864
No 195
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.76 E-value=1.5e-16 Score=124.97 Aligned_cols=225 Identities=13% Similarity=0.077 Sum_probs=143.9
Q ss_pred CCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc-ceeeEEe-----cCceeeEEcCCCcEEEEcC--C--CCeEEEE
Q psy13998 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT-NCVFLAF-----TWPRGIAVGPDNSIVVADS--S--NHRVQVF 124 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~-----~~~~~l~~~~~g~~~~~~~--~--~~~i~~~ 124 (319)
...+.+++|+|+|+++++++ ++.|++ |+..+ ....... ..+.+++|+|+++.+++.. . ...|..+
T Consensus 41 ~~~v~~~~~spdg~~l~~~~-~~~i~~----~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLNS-EGLLYR----LSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp SSCCEEEEECTTSSEEEEEE-TTEEEE----EESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred CcceEeeEECCCCCEEEEEc-CCeEEE----EeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence 45789999999999888775 789999 88876 4443322 2456799999998776655 2 3567777
Q ss_pred cCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEE-EeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998 125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY 203 (319)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (319)
+..+.....+.. ...+..++++|+++.++ +...++.+.+|+.+.. +.....+ ..+...+.+
T Consensus 116 ~~~~~~~~~~~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~------~~~~~~~~~ 177 (297)
T 2ojh_A 116 PSTGGTPRLMTK-------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID-----SGVETRL------THGEGRNDG 177 (297)
T ss_dssp ETTCCCCEECCS-------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT-----TCCEEEC------CCSSSCEEE
T ss_pred ECCCCceEEeec-------CCCccceEECCCCCEEEEEECCCCceEEEEEECC-----CCcceEc------ccCCCcccc
Confidence 754444443321 12367889999997554 6777888888874311 1111111 223345678
Q ss_pred EEEcCCCcEEE-EeCCCCeEEEEe--CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----------CEE
Q psy13998 204 IAVSNTNRVIV-SDSNNHRVQIFD--VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----------NRI 269 (319)
Q Consensus 204 ~~~~~~g~~~v-~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----------~~i 269 (319)
++++|+++.++ +...++.+.+|+ .++.....+ ..+...+..++|+|+|++++..+.+ ..|
T Consensus 178 ~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 178 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI------TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC------CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred ceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE------ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 99999997554 444456666665 456555555 2333456789999999866655543 579
Q ss_pred EEEcCCC-ceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998 270 QIFTPDG-QFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE 312 (319)
Q Consensus 270 ~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~ 312 (319)
++|+.++ +....... ..+...+..++|+|+|+.+++.+.
T Consensus 252 ~~~d~~~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 252 QLMDMDGGNVETLFDL----FGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EEEETTSCSCEEEEEE----EESTTTSCSCCBCTTSSEEEEEEE
T ss_pred EEEecCCCCceeeecc----CCCCcccccceECCCCCEEEEEEe
Confidence 9999654 33222210 234456888999999996555443
No 196
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.76 E-value=1.2e-15 Score=131.10 Aligned_cols=214 Identities=14% Similarity=0.146 Sum_probs=160.3
Q ss_pred EEEEeCCCCeEEEeccccccccceeeE-----EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCC
Q psy13998 69 IVVADSSNHRVQVCFPHFDLKTNCVFL-----AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAG 142 (319)
Q Consensus 69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 142 (319)
++++ ..+.|+. .++.+..... .+..|.+|++++. +.+|+++..+++|..++.+|.....+. ..
T Consensus 9 Ll~s--~~~~I~~----i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-----~~ 77 (628)
T 4a0p_A 9 LLFS--RRADIRR----ISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-----EF 77 (628)
T ss_dssp EEEE--ETTEEEE----EESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CS
T ss_pred EEEE--eCCcEEE----EECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-----eC
Confidence 4444 3467888 6665433211 3457889999975 679999999999999998775433332 22
Q ss_pred CCCCceeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCC-C
Q psy13998 143 QLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-N 219 (319)
Q Consensus 143 ~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~-~ 219 (319)
....|.+|++++ .+++|+++...++|.+.+++|.. ...+. ...+..|.+|+++| .|.+|+++.. .
T Consensus 78 g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-------~~~l~-----~~~l~~P~~iavdp~~G~lY~tD~g~~ 145 (628)
T 4a0p_A 78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-------RQVLV-----WKDLDSPRALALDPAEGFMYWTEWGGK 145 (628)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-------CEEEE-----CSSCCCEEEEEEETTTTEEEEEECSSS
T ss_pred CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-------EEEEE-----eCCCCCcccEEEccCCCeEEEeCCCCC
Confidence 335789999996 67999999999999999988742 11111 13456799999997 6899999965 6
Q ss_pred CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceE
Q psy13998 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGV 298 (319)
Q Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 298 (319)
++|.+++++|.....+ ...+..|.+|+++++ +++|+++...+.|..++.+|...+.+ ......|.+|
T Consensus 146 ~~I~r~~~dG~~~~~l------~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~------~~~l~~P~gl 213 (628)
T 4a0p_A 146 PKIDRAAMDGSERTTL------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI------ADDLPHPFGL 213 (628)
T ss_dssp CEEEEEETTSCSCEEE------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE------EECCSCEEEE
T ss_pred CEEEEEeCCCCceEEE------ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEe------eccCCCceEE
Confidence 8999999998766655 234668999999986 68999999999999999887655444 2345679999
Q ss_pred EEccCCcEEEEeCCCCeEEe
Q psy13998 299 AVMSNGNILVCDRENHRIQV 318 (319)
Q Consensus 299 ~~~~~g~~~v~~~~~~~i~v 318 (319)
+++. +.+|+++..+++|..
T Consensus 214 av~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 214 TQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EEET-TEEEEEETTTTEEEE
T ss_pred EEEC-CEEEEecCCCCEEEE
Confidence 9986 689999998888764
No 197
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.76 E-value=8.2e-16 Score=123.11 Aligned_cols=205 Identities=12% Similarity=0.049 Sum_probs=137.2
Q ss_pred CCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEEec---------CceeeEEcCCCcEEEEcC----------
Q psy13998 57 WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFT---------WPRGIAVGPDNSIVVADS---------- 116 (319)
Q Consensus 57 ~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~g~~~~~~~---------- 116 (319)
.|.+++++|+|+ +++++..++.|.+ |+..+.+....+. .+.+++++|+|+.+++..
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVK----IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEE----EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEE----EECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence 489999999996 6788888899999 8887666554332 678899999996544442
Q ss_pred --CCCeEEEEcC-CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeee-------------
Q psy13998 117 --SNHRVQVFQS-DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS------------- 180 (319)
Q Consensus 117 --~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~------------- 180 (319)
.++.|.+||. +++.+..+.. ...+.+++++|+|+.+++. ++.|.+||+.+.....
T Consensus 111 ~~~~~~i~v~d~~~~~~~~~~~~-------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 181 (337)
T 1pby_B 111 EVQPTRVALYDAETLSRRKAFEA-------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYA 181 (337)
T ss_dssp EECCCEEEEEETTTTEEEEEEEC-------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBC
T ss_pred cccCceEEEEECCCCcEEEEEeC-------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCcee
Confidence 4689999994 5555555532 1356889999999755544 5789999987543210
Q ss_pred --cCcee---------------------------------eeecccCC------cCCCCCCceeEEEcCCCcEEEEeCCC
Q psy13998 181 --DGTFV---------------------------------GKFGSMGN------KAGQLEHPHYIAVSNTNRVIVSDSNN 219 (319)
Q Consensus 181 --~~~~~---------------------------------~~~~~~~~------~~~~~~~~~~~~~~~~g~~~v~~~~~ 219 (319)
+++.+ ..+..... ...+...+.+++++|+|+++++. +
T Consensus 182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--C
Confidence 00000 00000000 00112346679999999766665 6
Q ss_pred CeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeec
Q psy13998 220 HRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFG 283 (319)
Q Consensus 220 ~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~ 283 (319)
+.|++||.. ++.+..+. ....|.+++++|+|+.+++++.++.|.+|+. +++.+..+.
T Consensus 260 ~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 260 NVLESFDLEKNASIKRVP-------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEECCCCcCcceec-------CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 899999975 45555542 1235789999999986666678999999995 677777763
No 198
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.76 E-value=3.4e-16 Score=137.93 Aligned_cols=268 Identities=11% Similarity=0.060 Sum_probs=164.1
Q ss_pred ccccccCCCccchhccccceeeeecccCCCCCc-------CCCCcceEEcCCCcEEEEeCCCCeEEEecccccccc----
Q psy13998 22 SGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGC-------FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKT---- 90 (319)
Q Consensus 22 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~---- 90 (319)
..+..+++||++.++.... ..+..|+...+. -..+..++|+|+|+.++.. .++.|++ |+..+
T Consensus 82 ~~v~~~~~spd~~~~~~~~--~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v----~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQ--GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYI----ARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTTTEEEEEET--TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEE----EECBCTTSC
T ss_pred cCceeEEECCCCeEEEEEC--CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEE----EecCccccc
Confidence 3588889999944444322 334344333222 2457889999999977774 5789999 88866
Q ss_pred -ceeeEEe--c-C---------------ceeeEEcCCCcEEEEcC---------------------------------CC
Q psy13998 91 -NCVFLAF--T-W---------------PRGIAVGPDNSIVVADS---------------------------------SN 118 (319)
Q Consensus 91 -~~~~~~~--~-~---------------~~~l~~~~~g~~~~~~~---------------------------------~~ 118 (319)
+...... . . +.+++|+|||+.++..+ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 4333211 1 1 47899999998666654 34
Q ss_pred CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC-----EEEEEecCCceeeecCceeeeecccCC
Q psy13998 119 HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH-----RVQIFDVNGRVFQSDGTFVGKFGSMGN 193 (319)
Q Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (319)
..|++||..+.....+... ..+...+..++|+|+|+.+++...+. .|.+||..+. +.........
T Consensus 235 ~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g------~~~~~~~~~~- 304 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTG---EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG------RFVRTLFVET- 304 (706)
T ss_dssp EEEEEEETTTTEEEECCCC---SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC------CEEEEEEEEE-
T ss_pred eEEEEEECCCCceEeeccC---CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC------ceeeEEEEcc-
Confidence 6799999655443333211 12335678899999998666544333 8999998753 1111110000
Q ss_pred cCCCCCCceeEEEcC--CCcEEEEeCCCCeEEEE--eCCCCEEEEeCCCCCCcccccCcce-EEEcCCCc-EEEEeCCCC
Q psy13998 194 KAGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIF--DVNGRVITSFGSEGSEEGQLKFPRG-VAVDDQGY-ISVGDSGNN 267 (319)
Q Consensus 194 ~~~~~~~~~~~~~~~--~g~~~v~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~g~-~~v~~~~~~ 267 (319)
..........++++| +|+++++...++.+.+| +.++..+..+ ..+...+.. ++++|+|+ +++++..++
T Consensus 305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l------~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV------TKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC------CCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec------CCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 011111235689999 99988887766655555 5567766666 222223444 79999986 566666655
Q ss_pred ----EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCC-C---CeEEeC
Q psy13998 268 ----RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE-N---HRIQVF 319 (319)
Q Consensus 268 ----~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~-~---~~i~v~ 319 (319)
.|+.|+.++.....+ .+...+.+++|+|||+.++.... . ..|.+|
T Consensus 379 ~~~~~l~~~d~~~~~~~~l-------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~ 431 (706)
T 2z3z_A 379 PLERHFYCIDIKGGKTKDL-------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVT 431 (706)
T ss_dssp TTCBEEEEEETTCCCCEES-------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEE
T ss_pred CceEEEEEEEcCCCCceec-------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEE
Confidence 788888655444444 23445788999999986654422 2 346654
No 199
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=6.8e-16 Score=124.25 Aligned_cols=228 Identities=17% Similarity=0.139 Sum_probs=145.9
Q ss_pred cCCCccchhccccceeeeecccCCCCCcC-------C--CCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEE
Q psy13998 27 VGTTPRSQYLQKRRLQFKIGSRGSEPGCF-------T--WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLA 96 (319)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~--~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 96 (319)
+++++++.++.+...+..+..++...+.. . .|.+++++|+|+ +++++..++.|.+ |+..+.+....
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~----~d~~t~~~~~~ 80 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG----IDLDTCKNTFH 80 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE----EETTTTEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEE----EeCCCCcEEEE
Confidence 45566666666655444544444333221 2 588999999997 6778888899999 88877665543
Q ss_pred ec----------CceeeEEcCCCcEEEEcCC------------CCeEEEEcC-CCcE---EEEecCCCccCCCCCCceeE
Q psy13998 97 FT----------WPRGIAVGPDNSIVVADSS------------NHRVQVFQS-DGTF---VGKFGSMGNKAGQLEHPHYI 150 (319)
Q Consensus 97 ~~----------~~~~l~~~~~g~~~~~~~~------------~~~i~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~l 150 (319)
+. .+.+++++|+|+.+++... .+.|.+||. +++. +.... ....+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~ 153 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-------MPRQVYLM 153 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-------CCSSCCCE
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-------CCCcccce
Confidence 33 2789999999976555543 379999994 4322 12221 11356889
Q ss_pred EEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC------------------C-------------------
Q psy13998 151 AVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG------------------N------------------- 193 (319)
Q Consensus 151 ~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------------~------------------- 193 (319)
+++|+|++|+. + +.|.+||..+... +..+.... .
T Consensus 154 ~~s~dg~l~~~-~--~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 154 RAADDGSLYVA-G--PDIYKMDVKTGKY------TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224 (349)
T ss_dssp EECTTSCEEEE-S--SSEEEECTTTCCE------EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred eECCCCcEEEc-c--CcEEEEeCCCCce------eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence 99999996664 3 3399999864321 11111000 0
Q ss_pred -------------------------cCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCccccc
Q psy13998 194 -------------------------KAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLK 246 (319)
Q Consensus 194 -------------------------~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 246 (319)
.......+.+++++| +++++++. ++.|++||.. ++.+..+. ...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-------~~~ 295 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-------LDH 295 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-------CSS
T ss_pred CccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-------CCC
Confidence 000112456778889 98776666 7899999974 55555542 112
Q ss_pred CcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeec
Q psy13998 247 FPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFG 283 (319)
Q Consensus 247 ~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~ 283 (319)
.+.+++++|+|+.+++++.++.|.+||. +++.+..+.
T Consensus 296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 4789999999875555677899999995 567776663
No 200
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.74 E-value=1.6e-15 Score=130.19 Aligned_cols=199 Identities=16% Similarity=0.205 Sum_probs=151.9
Q ss_pred CCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccccee--eE--EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCC
Q psy13998 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCV--FL--AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDG 128 (319)
Q Consensus 55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~ 128 (319)
+..|.+|++++ ++++|+++..++.|.. +++..... +. .+..|.+|++++. +++|+++...++|.+.+.+|
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r----~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG 111 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISR----AFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG 111 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEE----EETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEE----EECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC
Confidence 56789999998 5779999999999999 66643222 11 2347999999965 67999999999999999888
Q ss_pred cEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 129 TFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
.....+. ......|.+|+++| .|.+|+++.. ..+|...+++|.. ...+ ......|.+|++
T Consensus 112 ~~~~~l~-----~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-------~~~l------~~~~~~P~Glal 173 (628)
T 4a0p_A 112 QHRQVLV-----WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-------RTTL------VPNVGRANGLTI 173 (628)
T ss_dssp TTCEEEE-----CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-------CEEE------ECSCSSEEEEEE
T ss_pred CcEEEEE-----eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-------eEEE------ECCCCCcceEEE
Confidence 6544442 23457899999998 7899999954 6889999888742 1111 113568999999
Q ss_pred cCC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998 207 SNT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF 282 (319)
Q Consensus 207 ~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~ 282 (319)
+++ +++|+++...+.|..++.+|.....+ ...+..|.+|+++. +++|+++...++|..+++ +|+....+
T Consensus 174 D~~~~~LY~aD~~~~~I~~~d~dG~~~~v~------~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 174 DYAKRRLYWTDLDTNLIESSNMLGLNREVI------ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEE------EECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ccccCEEEEEECCCCEEEEEcCCCCceEEe------eccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 985 68999999999999999887544444 33456789999986 699999999999999994 56544333
No 201
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.74 E-value=2.3e-15 Score=129.17 Aligned_cols=194 Identities=20% Similarity=0.305 Sum_probs=150.3
Q ss_pred EecCceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCCCEEEEEec
Q psy13998 96 AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFDV 173 (319)
Q Consensus 96 ~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~ 173 (319)
.+..|.+|++++ ++.+|+++...+.|+.++.+|.....+. ......|.+++++. .+++|+++...+.|.+.++
T Consensus 347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-----~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~ 421 (619)
T 3s94_A 347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-----TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421 (619)
T ss_dssp CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-----ECCCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence 355788999997 5789999999999999998775433332 23346789999996 7899999999999999998
Q ss_pred CCceeeecCceeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCCC-CeEEEEeCCCCEEEEeCCCCCCcccccCcceE
Q psy13998 174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNN-HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGV 251 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (319)
+|.. ...+. ...+..|.+|+++|. |.+|+++... ..|...+++|.....+. ...+.+|.+|
T Consensus 422 ~G~~-------~~~l~-----~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~-----~~~l~~P~Gl 484 (619)
T 3s94_A 422 NGTM-------RKILI-----SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV-----NTSLGWPNGL 484 (619)
T ss_dssp TSCS-------CEEEE-----CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-----CSSCSCEEEE
T ss_pred CCCe-------EEEEE-----ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE-----eCCCCCCeee
Confidence 8742 11111 224678999999985 8999999754 78999999887554442 3356789999
Q ss_pred EEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998 252 AVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317 (319)
Q Consensus 252 ~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~ 317 (319)
+++++ +++|+++...++|..++.+|...+.+. ......|.+|++..+ .+|+++...++|.
T Consensus 485 alD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~-----~~~l~~P~glav~~~-~ly~tD~~~~~I~ 545 (619)
T 3s94_A 485 ALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV-----EDKIPHIFGFTLLGD-YVYWTDWQRRSIE 545 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-----ECCCCSSCCEEEETT-EEEEECTTSSCEE
T ss_pred EEcccCCEEEEEECCCCEEEEEecCCCceEEEe-----ccCCCCcEEEEEECC-EEEEeecCCCeEE
Confidence 99974 689999999999999998887665543 234567899999865 8999999888775
No 202
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.74 E-value=1.6e-15 Score=130.21 Aligned_cols=202 Identities=14% Similarity=0.176 Sum_probs=148.9
Q ss_pred cCCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccce---eeE--EecCceeeEEcC-CCcEEEEcCCCCeEEEEcC
Q psy13998 54 CFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNC---VFL--AFTWPRGIAVGP-DNSIVVADSSNHRVQVFQS 126 (319)
Q Consensus 54 ~~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~---~~~--~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~ 126 (319)
.+..|.+|++++ ++.+|+++...++|.. +++.... .+. .+..|.+|++++ .+++|+++...++|.+.+.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r----~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~ 113 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKR----TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 113 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEE----EEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEE----EEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEEC
Confidence 467899999998 6679999999999999 6664331 111 345899999998 5679999999999999998
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCC-CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI 204 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (319)
+|+....+. ......|.+|+++| .|.+|+++.. ...|...+++|.. ...+. ......|.+|
T Consensus 114 dG~~~~~l~-----~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-------~~~l~-----~~~~~~P~Gl 176 (619)
T 3s94_A 114 DGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-------RFIII-----NSEIYWPNGL 176 (619)
T ss_dssp TSCSCEEEE-----CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-------CEEEE-----CSSCSSEEEE
T ss_pred CCCCEEEEE-----eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-------eEEEE-----eCCCCCCcEE
Confidence 887655443 23457799999998 5889999865 5788888887632 11111 1235689999
Q ss_pred EEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998 205 AVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF 282 (319)
Q Consensus 205 ~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~ 282 (319)
++++ ++++|+++...+.|.+++.+|...+.+. ......|.+|+++++ ++|+++..+++|.++++ +|+....+
T Consensus 177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~-----~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-----KGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred EEEccCCEEEEEeCCCCeEEEecCCCCccEEEE-----eCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 9997 5799999999999999999987666552 224567899999877 99999999999999995 56554443
No 203
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.73 E-value=4e-16 Score=124.26 Aligned_cols=197 Identities=16% Similarity=0.196 Sum_probs=138.2
Q ss_pred CCCcceEEcC-CCcEEEEeCCCCeEEEecccccccccee--eE------EecCceeeEEcC-CCcEEEEcCC--------
Q psy13998 56 TWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCV--FL------AFTWPRGIAVGP-DNSIVVADSS-------- 117 (319)
Q Consensus 56 ~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~------~~~~~~~l~~~~-~g~~~~~~~~-------- 117 (319)
..|.+|++++ +|++|+++... .+.+ ++..+... +. .+..|.++++++ +|++|+++..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~-~i~~----~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYY-HLSV----VGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTT-EEEE----ECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred CCCceEEEcCCCCcEEEEECCC-CEEE----EeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence 4689999997 89999997764 4777 66543211 11 234689999999 9999998754
Q ss_pred ---------CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeee
Q psy13998 118 ---------NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGK 187 (319)
Q Consensus 118 ---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 187 (319)
.+.|.+++.++.....+. .....|.+++++++|+ +|++....+.|.+|++++.. .+.. ..
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~------~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~---~~~~-~~ 224 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETTLLL------KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK---KGTA-EV 224 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEEEEE------EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT---TTCE-EE
T ss_pred ceehcccCCCceEEEEeCCCCEEEEec------cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc---CCcc-ce
Confidence 367999996544333331 1235679999999985 88998888999999987521 0111 11
Q ss_pred ecccCCcCCCCCCceeEEEcCCCcEEEEeCC----------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC
Q psy13998 188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN----------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG 257 (319)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 257 (319)
+.. ... |.+++++++|++|++... .+.|.+++++|+.+..+..... ..+..+.++++ .+|
T Consensus 225 ~~~------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g--~~~~~~~~~~~-~~g 294 (322)
T 2fp8_A 225 LVK------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPP--FAGEHFEQIQE-HDG 294 (322)
T ss_dssp EEE------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTT--TTTSCCCEEEE-ETT
T ss_pred EEe------CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCC--CccccceEEEE-eCC
Confidence 110 112 899999999999999865 5789999999988877743211 11456777777 478
Q ss_pred cEEEEeCCCCEEEEEcCCCc
Q psy13998 258 YISVGDSGNNRIQIFTPDGQ 277 (319)
Q Consensus 258 ~~~v~~~~~~~i~~~~~~g~ 277 (319)
++|+++..++.|.+++.+.+
T Consensus 295 ~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 295 LLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEECSSCSEEEEEEC---
T ss_pred EEEEeecCCCceEEEecccc
Confidence 99999999999999997643
No 204
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.73 E-value=1.4e-15 Score=134.02 Aligned_cols=235 Identities=9% Similarity=0.041 Sum_probs=146.4
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe---cCceeeEEcCCCcEEEEcCCCCeEEEEcCC-----
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF---TWPRGIAVGPDNSIVVADSSNHRVQVFQSD----- 127 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~----- 127 (319)
..+.+++|+|++.++++ .++.+++ |+..+....... ..+..++|+|+|+.++.. .++.|++|+..
T Consensus 82 ~~v~~~~~spd~~~~~~--~~~~i~~----~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF--TQGGLVG----FDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTTTEEEEE--ETTEEEE----EETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCCCeEEEE--ECCEEEE----EECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 45889999999545554 3489999 888765543322 246789999999876664 57899999954
Q ss_pred -CcEEEEecCCCcc--------CCCCCCceeEEEeCCCeEEEEeC---------------------------------CC
Q psy13998 128 -GTFVGKFGSMGNK--------AGQLEHPHYIAVSNTNRVIVSDS---------------------------------NN 165 (319)
Q Consensus 128 -~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~g~~~~~~~---------------------------------~~ 165 (319)
++........... ..+...+.+++|+|||+.+++.+ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 4444322111000 00112357899999998777654 34
Q ss_pred CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCC-----CeEEEEeCCCC-EEEEeCCCC
Q psy13998 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGR-VITSFGSEG 239 (319)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~-~~~~~~~~~ 239 (319)
..|.+||+.+.. ..... . ...+...+..++++|+|+.+++...+ ..|++||.... ....+....
T Consensus 235 ~~l~~~d~~~~~------~~~~~-~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~ 304 (706)
T 2z3z_A 235 VTVGIYHLATGK------TVYLQ-T---GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET 304 (706)
T ss_dssp EEEEEEETTTTE------EEECC-C---CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred eEEEEEECCCCc------eEeec-c---CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc
Confidence 678889887532 11111 0 01223456789999999866654433 38999997543 444331110
Q ss_pred CCcccccCcceEEEcC--CCcEEEEeCCCCEEEEEc--CCCceEEeecccCCCCCCCCCcce-EEEccCCc-EEEEeCCC
Q psy13998 240 SEEGQLKFPRGVAVDD--QGYISVGDSGNNRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEG-VAVMSNGN-ILVCDREN 313 (319)
Q Consensus 240 ~~~~~~~~~~~i~~~~--~g~~~v~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~-l~~~~~g~-~~v~~~~~ 313 (319)
. ......+..++|+| +|++++++..++.+.+|. .+++.+..+ ..+...+.. ++|+|||+ +++++..+
T Consensus 305 ~-~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l------~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 305 D-KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV------TKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp C-SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC------CCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred C-CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec------CCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 0 11111236789999 999888887777666665 567777766 334444555 79999997 55666655
Q ss_pred C
Q psy13998 314 H 314 (319)
Q Consensus 314 ~ 314 (319)
+
T Consensus 378 ~ 378 (706)
T 2z3z_A 378 S 378 (706)
T ss_dssp C
T ss_pred C
Confidence 4
No 205
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=1.7e-16 Score=136.76 Aligned_cols=222 Identities=9% Similarity=0.067 Sum_probs=143.9
Q ss_pred CCcceEEcCCCcEEEEeCC-CCeEEEeccccccccceeeEEe----cCceeeEEcCCCcEEEEcCC---CC--eEEEEcC
Q psy13998 57 WPRGIAVGPDNSIVVADSS-NHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGPDNSIVVADSS---NH--RVQVFQS 126 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~~~~---~~--~i~~~~~ 126 (319)
.+++++++|||+.++..+. ++++.+ |++.++...... ..+..++|+|+ +++++... +. .++.++.
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~l----w~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNA----YLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEE----EEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred chheeecCCCCCeEEEEEccCCceeE----EEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 4788999999998777665 899999 877544333211 23467888988 66554432 34 4455555
Q ss_pred --CCcEEEEecCCCccCCCCCCceeEEEeCCC--eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998 127 --DGTFVGKFGSMGNKAGQLEHPHYIAVSNTN--RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH 202 (319)
Q Consensus 127 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (319)
++... .+.. .......+++++| .+|++...++ +.+||+++.. ...... ... .
T Consensus 98 ~~~g~~~-~l~~-------~~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~------~~~l~~-------~~~--~ 153 (582)
T 3o4h_A 98 SRPGEEQ-RLEA-------VKPMRILSGVDTGEAVVFTGATEDR-VALYALDGGG------LRELAR-------LPG--F 153 (582)
T ss_dssp TSTTCCE-ECTT-------SCSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTE------EEEEEE-------ESS--C
T ss_pred cCCCccc-cccC-------CCCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCc------EEEeec-------CCC--c
Confidence 55544 2221 1123355677766 4555555544 4589886532 111110 001 6
Q ss_pred eEEEcCCCcEEEEeCCC----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC--EEEEEcCCC
Q psy13998 203 YIAVSNTNRVIVSDSNN----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN--RIQIFTPDG 276 (319)
Q Consensus 203 ~~~~~~~g~~~v~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~--~i~~~~~~g 276 (319)
.++++|+|+.++..+.+ ..|++||.++...+.+ ..+......++|+|||+.+++...++ .|++||.++
T Consensus 154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF------DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE------CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe------ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence 78999999888755544 6799999754444455 23334468899999999877777777 899999655
Q ss_pred ceEEeecccCCCCCCCCCcceEE--------EccCCcEEEEeCCCCeEEeC
Q psy13998 277 QFLRAFGCWGSGDGEFKGLEGVA--------VMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~--------~~~~g~~~v~~~~~~~i~v~ 319 (319)
.....+ ..+...+.+++ |+|||.++++...++.+++|
T Consensus 228 ~~~~~~------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~ 272 (582)
T 3o4h_A 228 GSVEDL------ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF 272 (582)
T ss_dssp CCEEEC------CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred CcEEEc------cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEE
Confidence 443344 34444566667 99999999999999999887
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.72 E-value=3.7e-15 Score=117.26 Aligned_cols=194 Identities=12% Similarity=0.072 Sum_probs=136.3
Q ss_pred CceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998 99 WPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 177 (319)
Q Consensus 99 ~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~ 177 (319)
.+.+..|+++ +.+|+++..+++|++|+.++.....+.. ...|.+++++++|++|++. +..|.+||.++..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-------~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM-------DAPVSSVALRQSGGYVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-------SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC-------CCceEEEEECCCCCEEEEE--CCeEEEEECCCCc
Confidence 5578899985 6799999999999999966554444422 2467899999999988876 5689999987532
Q ss_pred eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-----------CCCeEEEEeCCCCEEEEeCCCCCCccccc
Q psy13998 178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------NNHRVQIFDVNGRVITSFGSEGSEEGQLK 246 (319)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 246 (319)
+. .+... .. ......++.++++++|++|++.. ..+.|+.++.++...... ....
T Consensus 85 ~~----~~~~~--~~--~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~ 149 (297)
T 3g4e_A 85 AV----VLATV--DN--DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-------DQVD 149 (297)
T ss_dssp EE----EEEEC--CT--TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-------EEES
T ss_pred EE----EEEec--CC--CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-------eccc
Confidence 21 11111 00 11234578899999999998763 345788888877654432 3455
Q ss_pred CcceEEEcCCCc-EEEEeCCCCEEEEEcC---CCceE--EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 247 FPRGVAVDDQGY-ISVGDSGNNRIQIFTP---DGQFL--RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 247 ~~~~i~~~~~g~-~~v~~~~~~~i~~~~~---~g~~~--~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.|.+++++|+++ +|+++..+++|.+|+. +|... +.+... ......|.+++++++|++|++...+++|.+|
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~---~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~ 225 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL---EKEEQIPDGMCIDAEGKLWVACYNGGRVIRL 225 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC---CGGGCEEEEEEEBTTSCEEEEEETTTEEEEE
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC---CCCCCCCCeeEECCCCCEEEEEcCCCEEEEE
Confidence 689999999985 8899998999999984 45432 111110 1223468999999999999999888877764
No 207
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.72 E-value=1.9e-16 Score=137.99 Aligned_cols=216 Identities=19% Similarity=0.164 Sum_probs=157.0
Q ss_pred CCCCcceEEcC-CCcEEEEeCCCCeEEEecccccccc----ceeeE----EecCceeeEEcC-CCcEEEEcCCCCeEEEE
Q psy13998 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKT----NCVFL----AFTWPRGIAVGP-DNSIVVADSSNHRVQVF 124 (319)
Q Consensus 55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~----~~~~~----~~~~~~~l~~~~-~g~~~~~~~~~~~i~~~ 124 (319)
+..|.+|++++ ++.+|+++...+.|++ +++.+ ..... .+..|.+|++++ .+++|+++...++|.++
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~----~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~ 480 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICS----TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 480 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEE----EESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEE
T ss_pred CcceEEEccccccCeEEEEecCCCeEEE----EecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEE
Confidence 56899999998 5678999888899999 66643 11111 345789999995 56899999888999999
Q ss_pred cCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCcCCCCCCce
Q psy13998 125 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH 202 (319)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (319)
+.++.....+. ......|.+|+++| .+.+|++.... ++|.+++++|. ....+. ...+..|+
T Consensus 481 d~dg~~~~~l~-----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-------~~~~l~-----~~~l~~Pn 543 (699)
T 1n7d_A 481 DTKGVKRKTLF-----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------DIYSLV-----TENIQWPN 543 (699)
T ss_dssp BSSSCCEEEEC-----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-------CCCEES-----CSSCSSCC
T ss_pred ecCCCceEEEE-----eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-------CeeEEE-----eCCCCCcc
Confidence 98887665553 22346789999998 57889988654 78888887753 111111 12356799
Q ss_pred eEEEcCC-CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEE
Q psy13998 203 YIAVSNT-NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLR 280 (319)
Q Consensus 203 ~~~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~ 280 (319)
+|+++++ +++|+++...++|.+++.+|...+.+... ...+..|.+|+++.+ ++|+++...++|.++++ +|+.+.
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~---~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC---SSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec---CCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 9999975 68999999999999999988665555321 234567899999875 89999999999999995 677777
Q ss_pred eecccCCCCCCCCCcceEEEc
Q psy13998 281 AFGCWGSGDGEFKGLEGVAVM 301 (319)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~ 301 (319)
.+. .....|.+|++.
T Consensus 620 ~i~------~~~~~P~~i~v~ 634 (699)
T 1n7d_A 620 LLA------ENLLSPEDMVLF 634 (699)
T ss_dssp CCC------TTCSSCCCCCBC
T ss_pred Eee------cCCCCCcEEEEe
Confidence 662 233446666554
No 208
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.71 E-value=6.6e-16 Score=136.51 Aligned_cols=238 Identities=8% Similarity=-0.011 Sum_probs=144.2
Q ss_pred CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-------CceeeEEcCCCcEEEEcCC---------CCe
Q psy13998 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-------WPRGIAVGPDNSIVVADSS---------NHR 120 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~g~~~~~~~~---------~~~ 120 (319)
.+.+++|+|+|+++++ +.++.|++ |+..++.....+. .+.+++|+|||+.+++... ++.
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~----~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRL----WNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEE----BCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEE----EECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 4788999999996655 67899999 8887765544333 2678999999987666543 268
Q ss_pred EEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC-c-----
Q psy13998 121 VQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN-K----- 194 (319)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 194 (319)
+++||..+.....+... ..+...+..++|+|||+.++..+. +.|++|+..+.. .......... .
T Consensus 93 i~~~d~~~~~~~~l~~~---~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~------~~~~~~~~~~~~~~~g~ 162 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPP---EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ------AIRVVSTGKEGVIYNGL 162 (723)
T ss_dssp EEEEESSSCCCEECCCT---TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC------CEEEECCCBTTTEEEEE
T ss_pred EEEEECCCCceEeccCC---ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc------eEEEecCCCCCceECcc
Confidence 89999544333333221 223334678999999977776654 789999987531 1111100000 0
Q ss_pred ------CCCCCCceeEEEcCCCcEEEEeCCC----------------------------------CeEEEEeCCCCE-EE
Q psy13998 195 ------AGQLEHPHYIAVSNTNRVIVSDSNN----------------------------------HRVQIFDVNGRV-IT 233 (319)
Q Consensus 195 ------~~~~~~~~~~~~~~~g~~~v~~~~~----------------------------------~~i~~~~~~~~~-~~ 233 (319)
........+++++|+|+.++....+ ..|++||..+.. ..
T Consensus 163 ~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~ 242 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL 242 (723)
T ss_dssp CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE
Confidence 0011234689999999866554322 278888865433 34
Q ss_pred EeCCCCCCcccccCcceEEEcCCCcEEEEeC----CCCEEEEEcC-CCceEEeecccCCCCCCCCC----cceEEEccCC
Q psy13998 234 SFGSEGSEEGQLKFPRGVAVDDQGYISVGDS----GNNRIQIFTP-DGQFLRAFGCWGSGDGEFKG----LEGVAVMSNG 304 (319)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~----~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~----~~~l~~~~~g 304 (319)
.+........+...+..++|+|||+++++.. .+..|++||. +|+....... .+... ...++|+|||
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~spdg 317 (723)
T 1xfd_A 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-----ESEAWLHRQNEEPVFSKDG 317 (723)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-----ECSSCCCCCCCCCEECTTS
T ss_pred EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-----ccCCEEeccCCCceEcCCC
Confidence 4421110011133467899999998775543 2357999995 4554443311 11111 2478999999
Q ss_pred c-EEEE-eCCCC
Q psy13998 305 N-ILVC-DRENH 314 (319)
Q Consensus 305 ~-~~v~-~~~~~ 314 (319)
+ +++. ...++
T Consensus 318 ~~l~~~~~~~~~ 329 (723)
T 1xfd_A 318 RKFFFIRAIPQG 329 (723)
T ss_dssp CSEEEEEEECCS
T ss_pred CeEEEEEecccC
Confidence 8 4443 55555
No 209
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=1.7e-15 Score=122.32 Aligned_cols=275 Identities=12% Similarity=0.128 Sum_probs=162.9
Q ss_pred hccchhhhhhhhhhcccccccCCCccchhccccce----------eeeecccCCCCC--------------cCCCCcceE
Q psy13998 7 AKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRL----------QFKIGSRGSEPG--------------CFTWPRGIA 62 (319)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~--------------~~~~~~~v~ 62 (319)
..|..+++++..+....--.++++|+++++..... ...+..++.... +-..|.+++
T Consensus 35 v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~ 114 (361)
T 2oiz_A 35 VYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFR 114 (361)
T ss_dssp EEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEE
T ss_pred EEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEE
Confidence 33445555554444221127789999987665432 223333332211 124689999
Q ss_pred EcCCCcEEE-EeCC-CCeEEEeccccccccceeeEE-ecCc--eeeEEcCCC-cEEEEcCCCCeEEEEc--CCCcEEEEe
Q psy13998 63 VGPDNSIVV-ADSS-NHRVQVCFPHFDLKTNCVFLA-FTWP--RGIAVGPDN-SIVVADSSNHRVQVFQ--SDGTFVGKF 134 (319)
Q Consensus 63 ~~~~g~~~~-~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~~--~~l~~~~~g-~~~~~~~~~~~i~~~~--~~~~~~~~~ 134 (319)
++|+|++++ +... +++|.+ ||..+.+.... +..+ .++.+.|++ ..+++.+.++++..++ .+++.....
T Consensus 115 ~spdg~~l~v~n~~~~~~v~v----~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~ 190 (361)
T 2oiz_A 115 QTTDGKFIVLQNASPATSIGI----VDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS 190 (361)
T ss_dssp ECTTSSEEEEEEESSSEEEEE----EETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEECCCCCCeEEE----EECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence 999998554 4433 689999 99988877666 5433 336677776 5777777788888887 346654222
Q ss_pred cCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC----CcCCCCCCceeEEEcCCC
Q psy13998 135 GSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG----NKAGQLEHPHYIAVSNTN 210 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g 210 (319)
..... ......+..+...+++..++....++.+.++|..+... .....+.... ........+..+++++++
T Consensus 191 ~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg 265 (361)
T 2oiz_A 191 RSKQM-FSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV----KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS 265 (361)
T ss_dssp ECCCC-SCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC----EEEEEEESCCHHHHHTTCEECCSSCEEEETTT
T ss_pred cccce-EcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc----eecccccccCccccccccccCCeeEEEEecCC
Confidence 10000 00011223333345554444444678899998764211 1111111000 000001122348899985
Q ss_pred -cEEEEeC----------CCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCC-
Q psy13998 211 -RVIVSDS----------NNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDG- 276 (319)
Q Consensus 211 -~~~v~~~----------~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g- 276 (319)
++|++.. ..+.|.+||. +++.+..+ ..+. |.+++++|+|+++++... +.|.+|| .++
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i------~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI------PGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE------ECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE------ecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence 6666643 1358999996 56666666 3333 999999999986666665 9999999 567
Q ss_pred -ceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998 277 -QFLRAFGCWGSGDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 277 -~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 305 (319)
+.+..+ ......|+.++++|+|+
T Consensus 337 l~~~~~i------~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 337 PKLLRTI------EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEEE------TTSCSSEEEEEECCCSC
T ss_pred ceeeEEe------ccCCCCcEEEEecCCCC
Confidence 777776 34556799999999985
No 210
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.70 E-value=2.5e-14 Score=112.98 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=136.1
Q ss_pred cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC--CEEEEEecCC
Q psy13998 98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--HRVQIFDVNG 175 (319)
Q Consensus 98 ~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~--~~i~~~~~~~ 175 (319)
..|.+++++++|++|+++..+++|.+|+.+++....+... ..|.+++++++|++|+++... ..|..++..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~-------~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE-------GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECS-------SEEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCC-------CCceeEEEcCCCcEEEEeccCCcceEEEEcCCC
Confidence 5789999999999999998899999999888766554321 368999999999999988543 3577777543
Q ss_pred ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCC--EEEEeCCC---CCCcccccCcce
Q psy13998 176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR--VITSFGSE---GSEEGQLKFPRG 250 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~ 250 (319)
+++...... .....+.+++..+++.+|+++..++.|+++|..+. .+...... ......+..|.+
T Consensus 105 ------g~~~~~~~~-----~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 105 ------GTVETLLTL-----PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp ------SCEEEEEEC-----TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred ------CeEEEEEeC-----CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 222211111 11244677887777788999988899999997643 12211100 011233456788
Q ss_pred EEEcCCC-cEEEEeCCCCEEEEEcCCC--ce--EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 251 VAVDDQG-YISVGDSGNNRIQIFTPDG--QF--LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 251 i~~~~~g-~~~v~~~~~~~i~~~~~~g--~~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
| ++++ .+|++....++|.+|+.++ +. ...+ .....|.+|+++++|++|++...+++|.+|
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-------~~~~~P~gi~vd~dG~l~va~~~~~~V~~~ 238 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-------VEQTNIDDFAFDVEGNLYGATHIYNSVVRI 238 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-------EESCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-------eccCCCCCeEECCCCCEEEEeCCCCeEEEE
Confidence 7 6776 6999999999999999653 22 1111 112469999999999999999888888764
No 211
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.70 E-value=7.3e-15 Score=115.22 Aligned_cols=205 Identities=11% Similarity=0.069 Sum_probs=132.2
Q ss_pred eCCCCeEEEeccccccccceeeE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC--CcEEEEecCCCccCCCCCCc
Q psy13998 73 DSSNHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD--GTFVGKFGSMGNKAGQLEHP 147 (319)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~ 147 (319)
++.++.|++ |+..+..... +...+.+++++|+|++++++. ++.|++|+.. ++...... ......+
T Consensus 18 ~~~~~~i~~----~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~-----~~~~~~~ 87 (297)
T 2ojh_A 18 GSMRSSIEI----FNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT-----GFATICN 87 (297)
T ss_dssp CCCCEEEEE----EETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC-----TTCCCBC
T ss_pred CCcceeEEE----EeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc-----ccccccc
Confidence 456789999 8876655433 233678999999999777765 7799999954 44443321 1112456
Q ss_pred eeEEEeCCCeEEEEeC--C--CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEE-EeCCCCeE
Q psy13998 148 HYIAVSNTNRVIVSDS--N--NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDSNNHRV 222 (319)
Q Consensus 148 ~~l~~~~~g~~~~~~~--~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~i 222 (319)
.+++++|+++.+++.. . ...|..++..+. . ...+. ....+..++++|+++.++ +...++.+
T Consensus 88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~------~-~~~~~-------~~~~~~~~~~spdg~~l~~~~~~~~~~ 153 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGG------T-PRLMT-------KNLPSYWHGWSPDGKSFTYCGIRDQVF 153 (297)
T ss_dssp SCCEECTTSSEEEEEECTTTSSCEEEEEETTCC------C-CEECC-------SSSSEEEEEECTTSSEEEEEEEETTEE
T ss_pred cceEECCCCCEEEEEEeCCCCcceEEEEECCCC------c-eEEee-------cCCCccceEECCCCCEEEEEECCCCce
Confidence 7899999998877766 2 345666665532 1 11111 112367789999997554 66667777
Q ss_pred EEEe--CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE-EeCCCCEEEEEc--CCCceEEeecccCCCCCCCCCcce
Q psy13998 223 QIFD--VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV-GDSGNNRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEG 297 (319)
Q Consensus 223 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v-~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~ 297 (319)
.+|+ ..+.....+ ..+...+..++++|+|+.++ ++..++.+.+|+ .++..+..+ ..+...+..
T Consensus 154 ~l~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~ 221 (297)
T 2ojh_A 154 DIYSMDIDSGVETRL------THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI------TDSAYGDWF 221 (297)
T ss_dssp EEEEEETTTCCEEEC------CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC------CCCSEEEEE
T ss_pred EEEEEECCCCcceEc------ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE------ecCCcccCC
Confidence 7766 454444444 23344578899999997544 554566666665 456566655 344556788
Q ss_pred EEEccCCcEEEEeCCC
Q psy13998 298 VAVMSNGNILVCDREN 313 (319)
Q Consensus 298 l~~~~~g~~~v~~~~~ 313 (319)
++|+|+|++++..+.+
T Consensus 222 ~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYD 237 (297)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred eEECCCCCEEEEEEcC
Confidence 9999999966655543
No 212
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.70 E-value=7.7e-15 Score=118.96 Aligned_cols=243 Identities=13% Similarity=0.126 Sum_probs=144.6
Q ss_pred cccccCCCccchhccccceeeeecccCCC-CCcC---------CCCcceEEcCCCcE--EEEeC-------------CCC
Q psy13998 23 GIGQVGTTPRSQYLQKRRLQFKIGSRGSE-PGCF---------TWPRGIAVGPDNSI--VVADS-------------SNH 77 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~---------~~~~~v~~~~~g~~--~~~~~-------------~~~ 77 (319)
.+..++++|+++++...... .+..|... .+.+ ..|.+++++|+|+. ++++. .++
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 46678899999876554332 33222211 1111 24788999999994 33443 578
Q ss_pred eEEEeccccccccce-ee---EE-----ecCceeeEEcCCCc-EEEEcCCCCeEEEEcC--CCcEEE--EecCCCccCCC
Q psy13998 78 RVQVCFPHFDLKTNC-VF---LA-----FTWPRGIAVGPDNS-IVVADSSNHRVQVFQS--DGTFVG--KFGSMGNKAGQ 143 (319)
Q Consensus 78 ~v~~~~~~~~~~~~~-~~---~~-----~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~--~~~~~~--~~~~~~~~~~~ 143 (319)
.+.+ |++...+ .. .. ...+.+++++|+|+ +|+++..++.|.+|+. +|+... .+.. ..+
T Consensus 120 ~v~v----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~----~~~ 191 (365)
T 1jof_A 120 YGNV----FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA----PDP 191 (365)
T ss_dssp EEEE----EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC----SST
T ss_pred eEEE----EccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEec----CCC
Confidence 8999 7775322 21 11 23688999999997 5566666789999994 465432 2211 112
Q ss_pred CCCceeEEEeCCCeE-EEEeCCCCEEEEEecCCceeeecCcee---eeecccCC-cCCCCC------CceeEE-EcCCCc
Q psy13998 144 LEHPHYIAVSNTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFV---GKFGSMGN-KAGQLE------HPHYIA-VSNTNR 211 (319)
Q Consensus 144 ~~~~~~l~~~~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~------~~~~~~-~~~~g~ 211 (319)
...|.+++++|+|+. |++...++.+.+|+.+.. .+++. ........ ...+.. .+.+++ ++|+|+
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~----~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~ 267 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA----THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK 267 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT----TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC----CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC
Confidence 356899999999964 556666789999876421 11221 11111000 001111 478899 999997
Q ss_pred E-EEEeCCCC-----eEEEEeC--CCCEEEEeCCCCCCcccccCcceEEEcC---CCcEEEEeC-CCCEEEEEcCCCceE
Q psy13998 212 V-IVSDSNNH-----RVQIFDV--NGRVITSFGSEGSEEGQLKFPRGVAVDD---QGYISVGDS-GNNRIQIFTPDGQFL 279 (319)
Q Consensus 212 ~-~v~~~~~~-----~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~g~~~v~~~-~~~~i~~~~~~g~~~ 279 (319)
+ |++....+ .|.+|+. +++........ ......|.+++++| +|+++++.. .++.|.+|+.+++.+
T Consensus 268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~---~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS---PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE---ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee---ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 5 55554444 8999985 45543311000 11223578899999 787555554 569999999765544
Q ss_pred Ee
Q psy13998 280 RA 281 (319)
Q Consensus 280 ~~ 281 (319)
..
T Consensus 345 ~~ 346 (365)
T 1jof_A 345 HR 346 (365)
T ss_dssp EE
T ss_pred ce
Confidence 43
No 213
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.69 E-value=3e-15 Score=123.78 Aligned_cols=199 Identities=9% Similarity=-0.042 Sum_probs=134.5
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc----------eeeE---------EecCceeeEEcCCCcEEE---
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN----------CVFL---------AFTWPRGIAVGPDNSIVV--- 113 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~---------~~~~~~~l~~~~~g~~~~--- 113 (319)
.....+++++++.++++++.++ +++ |+.... .... .-..+.+++|+++|++++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~ 111 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQI----FPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACM 111 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEE----EEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEE----EEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEE
Confidence 4568899999888888877776 777 432110 0000 112478999999998877
Q ss_pred -EcCCCCeEEEEcC-CC--------cEEEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecC
Q psy13998 114 -ADSSNHRVQVFQS-DG--------TFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDG 182 (319)
Q Consensus 114 -~~~~~~~i~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~ 182 (319)
+++.++.|++||. ++ +.+..+... .+|...+.+++|+|+ ++++++++.++.|++||++..
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~------ 182 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL---KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET------ 182 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC---CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS------
T ss_pred eccCCCceEEEEEccccccCCcCCcceeeeeecc---CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC------
Confidence 7888999999993 22 111111111 345678899999997 789999999999999999753
Q ss_pred ceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCC-cccccCcceEEEcCCCcEEE
Q psy13998 183 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSE-EGQLKFPRGVAVDDQGYISV 261 (319)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~~~v 261 (319)
...... ..+...+.+++++|+|+++++++.++.|++||.+++....+...... ..+...+.++++++++.+++
T Consensus 183 ~~~~~~------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 183 VKVCAT------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp EEEEEE------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred cceeec------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 111111 12345678999999999999999999999999887666655322110 11223578899998876654
Q ss_pred Ee-CCC------CEEEEEcC
Q psy13998 262 GD-SGN------NRIQIFTP 274 (319)
Q Consensus 262 ~~-~~~------~~i~~~~~ 274 (319)
+. ..+ ..+++|+.
T Consensus 257 ~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 257 VYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp EEEETTCCSSSCCEEEEEEC
T ss_pred EEccCCCccCCCCceEEEEe
Confidence 32 223 24888884
No 214
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.69 E-value=5.1e-15 Score=135.76 Aligned_cols=219 Identities=12% Similarity=0.090 Sum_probs=150.3
Q ss_pred CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---------------CceeeEEc-CCCcEEEEcCCCCe
Q psy13998 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---------------WPRGIAVG-PDNSIVVADSSNHR 120 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~-~~g~~~~~~~~~~~ 120 (319)
.+..++|+|+|+.++.. .++.|.+ |+..+... ..+. .+..++|+ |+|+.++... ++.
T Consensus 246 ~~~~~~~SpDG~~la~~-~~~~i~~----~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~ 318 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFS-KGGSIYI----FNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQ 318 (1045)
T ss_dssp SSCEEEEEESSSCEEEE-ETTEEEE----ECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTE
T ss_pred CcceeeEcCCCCEEEEE-eCCEEEE----ecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCE
Confidence 35577999999976665 4789999 77643322 2222 46889999 9998555544 678
Q ss_pred EEEEcCCCcEEEEecCCCccCCCCC-CceeEEEeCCCeEEEEeCCCCEEE-EEecCCceeeecCceeeeecccCCcCCCC
Q psy13998 121 VQVFQSDGTFVGKFGSMGNKAGQLE-HPHYIAVSNTNRVIVSDSNNHRVQ-IFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198 (319)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (319)
+++|+..+.....+ ..+.. .+..++|+ +|+.++..+.+..+. +|+..+.. . ..+ ..+.
T Consensus 319 i~~~~~~~~~~~~~------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~------~-~~l------~~~~ 378 (1045)
T 1k32_A 319 AFIQDVSGTYVLKV------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------A-EKF------EENL 378 (1045)
T ss_dssp EEEECTTSSBEEEC------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------E-EEC------CCCC
T ss_pred EEEEcCCCCceEEc------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC------c-eEe------cCCc
Confidence 99999554433333 22233 56788899 887777666677888 88887531 1 111 1223
Q ss_pred CCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC----------C
Q psy13998 199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN----------N 267 (319)
Q Consensus 199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~----------~ 267 (319)
..+..++++|+|+.+++...++.|++||.. ++..... ..+...+.+++|+|||++++..+.+ +
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~------~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~ 452 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 452 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec------cCCCCCccceEECCCCCeEEEEecCccccccCCCCC
Confidence 456789999999988888888999999975 4444443 2344456889999999877665543 4
Q ss_pred EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998 268 RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314 (319)
Q Consensus 268 ~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~ 314 (319)
.|++|+..+..+..+ ..+...+..++|+|||+.++..+.++
T Consensus 453 ~i~l~d~~~g~~~~l------~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 453 AIHVYDMEGRKIFAA------TTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp EEEEEETTTTEEEEC------SCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred eEEEEECCCCcEEEe------eCCCcccCCceEcCCCCEEEEEeccc
Confidence 899999765445555 45566678899999999665555543
No 215
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.68 E-value=1.4e-14 Score=116.18 Aligned_cols=245 Identities=16% Similarity=0.166 Sum_probs=145.8
Q ss_pred CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE-------ecCceeeEEcCC----CcEEEEcCCC-----
Q psy13998 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-------FTWPRGIAVGPD----NSIVVADSSN----- 118 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~----g~~~~~~~~~----- 118 (319)
+..|++|+++|+|++|++... ++|.+ ++-.+...+.. ...|.+|+++|+ +.+|++....
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~-g~I~~----i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERP-GRIRL----FREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETT-TEEEE----EETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred CCCceEEEEcCCCeEEEEeCC-CeEEE----EECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 678999999999999999875 89988 65211111111 247899999997 6788887643
Q ss_pred CeEEEEcCCCc-E--EEE-ecCCCccCCCCCCceeEEEeCCCeEEEEeCC-------------CCEEEEEecCCceeeec
Q psy13998 119 HRVQVFQSDGT-F--VGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVNGRVFQSD 181 (319)
Q Consensus 119 ~~i~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-------------~~~i~~~~~~~~~~~~~ 181 (319)
.+|..++.++. . ... +..........+.+..++++++|.+|++.+. .++|..++.++.....+
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 67889985432 1 111 1100000122356789999999999998642 25788887776321100
Q ss_pred Cceeeeeccc-CCcCCCCCCceeEEEcC-CCcEEEEeCCCCe--------EEEEeCCCCEEE--EeC---CCCCC-----
Q psy13998 182 GTFVGKFGSM-GNKAGQLEHPHYIAVSN-TNRVIVSDSNNHR--------VQIFDVNGRVIT--SFG---SEGSE----- 241 (319)
Q Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~--------i~~~~~~~~~~~--~~~---~~~~~----- 241 (319)
.+...-... .........|.++++++ +|++|+++...+. |.+....+..=. ... .....
T Consensus 185 -pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 -PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp -TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred -cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 000000000 00011235689999999 7899999876654 444432210000 000 00000
Q ss_pred cccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC--Cce-----EEeecccCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998 242 EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD--GQF-----LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE 312 (319)
Q Consensus 242 ~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~--g~~-----~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~ 312 (319)
......|.++++ .+|.+|++....++|..++.+ +.. ...+ ......|.+++++|||.+|+++..
T Consensus 264 ~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~------~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 264 WPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA------LSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp CTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE------EESSCCEEEEEECTTSCEEEEECS
T ss_pred cCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee------cccCCCeeEEEECCCCcEEEEEeC
Confidence 011235788999 578999999999999999854 321 1112 112457999999999999988754
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.68 E-value=1.2e-14 Score=114.86 Aligned_cols=195 Identities=19% Similarity=0.273 Sum_probs=133.5
Q ss_pred ecCceeeEEcCCCc-EEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998 97 FTWPRGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG 175 (319)
Q Consensus 97 ~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~ 175 (319)
+..+.+.+++++|+ +|+++..++.|.+|+.+++. ..+. .....+.+++++++|++|++...++.|.+|+.++
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~------~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g 116 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLL------DATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG 116 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEE------ESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEe------CCCCccceeeECCCCCEEEEECCCCEEEEECCCC
Confidence 34667899999987 88899889999999987764 3332 1224679999999999999988888999999875
Q ss_pred ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-----------------CCCeEEEEeCC-CCEEEEeCC
Q psy13998 176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------------NNHRVQIFDVN-GRVITSFGS 237 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-----------------~~~~i~~~~~~-~~~~~~~~~ 237 (319)
.... +..... ......|..++++++|++|+++. ..+.|++++++ ++.. .+
T Consensus 117 ~~~~----~~~~~~-----~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-~~-- 184 (305)
T 3dr2_A 117 QAHL----LVGRYA-----GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-RM-- 184 (305)
T ss_dssp CEEE----EECEET-----TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-EE--
T ss_pred CEEE----EEeccC-----CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-EE--
Confidence 3211 111110 11235678899999999999852 13679999974 4433 33
Q ss_pred CCCCcccccCcceEEEcCCCc-EEEEeCC-----CCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998 238 EGSEEGQLKFPRGVAVDDQGY-ISVGDSG-----NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR 311 (319)
Q Consensus 238 ~~~~~~~~~~~~~i~~~~~g~-~~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~ 311 (319)
. ....|.+++++|+|+ +|+++.. .+.|++|+.++..+....... ......|.+++++++|++|++.
T Consensus 185 ----~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~--~~~~~~pdgi~~d~~G~lwv~~- 256 (305)
T 3dr2_A 185 ----A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA--SVPDGLPDGFCVDRGGWLWSSS- 256 (305)
T ss_dssp ----E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE--CCSSSCCCSEEECTTSCEEECC-
T ss_pred ----e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE--ECCCCCCCeEEECCCCCEEEec-
Confidence 2 345688999999996 7888776 379999995432222111000 1123468899999999988887
Q ss_pred CCCeEEeC
Q psy13998 312 ENHRIQVF 319 (319)
Q Consensus 312 ~~~~i~v~ 319 (319)
.+ .|.+|
T Consensus 257 ~~-gv~~~ 263 (305)
T 3dr2_A 257 GT-GVCVF 263 (305)
T ss_dssp SS-EEEEE
T ss_pred CC-cEEEE
Confidence 33 35553
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.68 E-value=2.2e-15 Score=121.01 Aligned_cols=208 Identities=12% Similarity=0.108 Sum_probs=141.3
Q ss_pred CcCCCCcceEEcCCCcEEEEeCC-----CCeEEEeccccccccceeeEEec----------CceeeEEcCC-CcEEEEcC
Q psy13998 53 GCFTWPRGIAVGPDNSIVVADSS-----NHRVQVCFPHFDLKTNCVFLAFT----------WPRGIAVGPD-NSIVVADS 116 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~-g~~~~~~~ 116 (319)
+++..|.+|+++++|++|+++.. .++|.+ |++.++.....+. .+.+++++++ +.+|+++.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~----~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~ 139 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA----WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDP 139 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE----EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEEC
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE----EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcC
Confidence 56789999999999999999876 578999 8887666444332 3589999975 67899988
Q ss_pred ---CCCeEEEEcC-CCcEEEEecCC-Cc-c-------CC--------------CCCCceeEEEeCCC-eEEEEeCCCCEE
Q psy13998 117 ---SNHRVQVFQS-DGTFVGKFGSM-GN-K-------AG--------------QLEHPHYIAVSNTN-RVIVSDSNNHRV 168 (319)
Q Consensus 117 ---~~~~i~~~~~-~~~~~~~~~~~-~~-~-------~~--------------~~~~~~~l~~~~~g-~~~~~~~~~~~i 168 (319)
.++.|.+||. +++....+... .. . .+ ....+.+|+++++| .+|++......+
T Consensus 140 ~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 140 APDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp CSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred ccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence 7889999995 56655544210 00 0 00 01346899999998 477777777788
Q ss_pred EEEecCCcee--eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccc
Q psy13998 169 QIFDVNGRVF--QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQL 245 (319)
Q Consensus 169 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~ 245 (319)
..++.....- ...++....+.. ..+...|.+++++++|++|++...++.|.+|++ +|+...... ....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~----~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-----~~~~ 290 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIER----YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-----DEKL 290 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEE----EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-----CGGG
T ss_pred EEEEHHHhcCCCCChhhhhcceEe----cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-----CCce
Confidence 7776421000 000000000000 112236889999999999999999999999998 776443331 1236
Q ss_pred cCcceEEEcCCCcEEEEeCCCCEEEEEc
Q psy13998 246 KFPRGVAVDDQGYISVGDSGNNRIQIFT 273 (319)
Q Consensus 246 ~~~~~i~~~~~g~~~v~~~~~~~i~~~~ 273 (319)
..|.+++++++|++|+++...+++.+|.
T Consensus 291 ~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 291 SWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp SCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ecCCeeEECCCCcEEEEeCccccccccc
Confidence 6799999999999999988766555554
No 218
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.68 E-value=2.9e-16 Score=135.26 Aligned_cols=252 Identities=10% Similarity=0.017 Sum_probs=156.3
Q ss_pred cccccccCCCccchhccccce-eeeecccCCCCC-------c-CCCCcceEEcCCCcEEEEeCC---CCeEEEecccccc
Q psy13998 21 VSGIGQVGTTPRSQYLQKRRL-QFKIGSRGSEPG-------C-FTWPRGIAVGPDNSIVVADSS---NHRVQVCFPHFDL 88 (319)
Q Consensus 21 ~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~-------~-~~~~~~v~~~~~g~~~~~~~~---~~~v~~~~~~~~~ 88 (319)
...|..++++|+++.++..+. +.++.+|....+ + ...+..++|+|+ +++++... +....+|. ++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~--~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK--VNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE--EET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE--Eec
Confidence 556889999999998887654 444444432111 1 245778899998 76665443 44444511 333
Q ss_pred --cccee-eEEecCceeeEEcCCCc--EEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC
Q psy13998 89 --KTNCV-FLAFTWPRGIAVGPDNS--IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 163 (319)
Q Consensus 89 --~~~~~-~~~~~~~~~l~~~~~g~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 163 (319)
..... +.........+++++|+ ++++... +.+.+||.++.....+.. .. . .+++++|||+.+++.+
T Consensus 98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~-----~~-~--~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELAR-----LP-G--FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp TSTTCCEECTTSCSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEE-----ES-S--CEEEEEEETTEEEEEE
T ss_pred cCCCccccccCCCCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeec-----CC-C--ceEEECCCCCEEEEEE
Confidence 21211 11222344567777764 4554444 455699954433333321 11 1 7889999999888655
Q ss_pred CC----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC--eEEEEeCCCCEEEEeCC
Q psy13998 164 NN----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH--RVQIFDVNGRVITSFGS 237 (319)
Q Consensus 164 ~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~i~~~~~~~~~~~~~~~ 237 (319)
.+ ..|++||+.+. +.. .+ ..+......++++|||+.+++...++ .|++||.++.....+
T Consensus 169 ~~~~~~~~i~~~d~~~g------~~~-~l------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~-- 233 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSG------GLR-VF------DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDL-- 233 (582)
T ss_dssp EEETTEEEEEEEETTTC------CCE-EE------CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEEC--
T ss_pred EcCCCCeEEEEEcCCCC------Cce-Ee------ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEc--
Confidence 44 67999998753 221 22 12233457799999998877766677 899999765444433
Q ss_pred CCCCcccccCcceEE--------EcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998 238 EGSEEGQLKFPRGVA--------VDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC 309 (319)
Q Consensus 238 ~~~~~~~~~~~~~i~--------~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~ 309 (319)
..+...+.+++ |+|||.++++...++++.+|+. |+.+... ...+.+++++ +|+++++
T Consensus 234 ----~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~~~---------~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 234 ----ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERVEAP---------QGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp ----CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEECCC---------SSEEEEEEEE-TTEEEEE
T ss_pred ----cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCeeccC---------CCceEEEEec-CCEEEEE
Confidence 22222234445 9999999999999999999999 7655422 1357789999 8887777
Q ss_pred eCCCC
Q psy13998 310 DRENH 314 (319)
Q Consensus 310 ~~~~~ 314 (319)
.+.+.
T Consensus 299 ~s~~~ 303 (582)
T 3o4h_A 299 HTSLS 303 (582)
T ss_dssp EEETT
T ss_pred EcCCC
Confidence 65543
No 219
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.68 E-value=7.9e-16 Score=134.07 Aligned_cols=213 Identities=18% Similarity=0.142 Sum_probs=151.5
Q ss_pred CCeEEEeccccccccceeeE---EecCceeeEEcCC-CcEEEEcCCCCeEEEEcCCCc----EEEEecCCCccCCCCCCc
Q psy13998 76 NHRVQVCFPHFDLKTNCVFL---AFTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGT----FVGKFGSMGNKAGQLEHP 147 (319)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~ 147 (319)
.+.|++ +++.+..... .+..|.+|++++. +.+|+++...++|++++.++. ....+. ......|
T Consensus 385 ~~~I~~----id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-----~~~~~~P 455 (699)
T 1n7d_A 385 RHEVRK----MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRDIQAP 455 (699)
T ss_dssp TTC-CE----ECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-----CSCC--C
T ss_pred ccceEE----EeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-----eCCCCCc
Confidence 356777 6665433322 4557899999975 579999988899999997652 111111 1234568
Q ss_pred eeEEEeC-CCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCC-CeEEE
Q psy13998 148 HYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQI 224 (319)
Q Consensus 148 ~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~-~~i~~ 224 (319)
.+|++++ .+++|+++...+.|.++++++.. ...+. ...+..|.+|+++| .+.+|+++... +.|++
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-------~~~l~-----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~ 523 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-------RKTLF-----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 523 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCC-------EEEEC-----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEB
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCc-------eEEEE-----eCCCCCcceEEEccCCCcEEEcccCCCCeEEE
Confidence 8999995 67999999888999999987642 22221 12345689999998 46889988765 79999
Q ss_pred EeCCCCEEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccC
Q psy13998 225 FDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSN 303 (319)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (319)
++++|.....+. ...+..|.+|+++++ +++|++....++|.+++.+|...+.+... ......|.+|+++.+
T Consensus 524 ~~~dG~~~~~l~-----~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~---~~~~~~P~glavd~~ 595 (699)
T 1n7d_A 524 GGLNGVDIYSLV-----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFED 595 (699)
T ss_dssp CCSSSCCCCEES-----CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC---SSSCSSCCCCEEETT
T ss_pred EeCCCCCeeEEE-----eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec---CCcCCCceEeEEECC
Confidence 998886554442 234668999999986 68999999999999999888665555321 234567899999865
Q ss_pred CcEEEEeCCCCeEEe
Q psy13998 304 GNILVCDRENHRIQV 318 (319)
Q Consensus 304 g~~~v~~~~~~~i~v 318 (319)
.+|+++...++|..
T Consensus 596 -~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 596 -KVFWTDIINEAIFS 609 (699)
T ss_dssp -EEEEECSTTTCEEE
T ss_pred -EEEEEeCCCCeEEE
Confidence 79999988888865
No 220
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=6.7e-15 Score=120.33 Aligned_cols=271 Identities=10% Similarity=-0.007 Sum_probs=150.4
Q ss_pred cCCCccchhccccce-ee--eecccCCCC--------CcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE
Q psy13998 27 VGTTPRSQYLQKRRL-QF--KIGSRGSEP--------GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL 95 (319)
Q Consensus 27 ~~~~~~~~~l~~~~~-~~--~~~~~~~~~--------~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 95 (319)
.+|||++++++.... .. .+..++... ++...+.+++|+|+|+.++..+.++.|++ |++.+.+...
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~----~d~~~g~~~~ 116 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMR----VDLATLEENV 116 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEE----EETTTCCEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEE----EECCCCccee
Confidence 789999998765543 22 122222222 22233347899999998887777889999 8887665443
Q ss_pred EecCc------eeeEEcCCCcEEEE----------------------cCCCCeEEEEcC-CCcEEEEecCCCccCCCCCC
Q psy13998 96 AFTWP------RGIAVGPDNSIVVA----------------------DSSNHRVQVFQS-DGTFVGKFGSMGNKAGQLEH 146 (319)
Q Consensus 96 ~~~~~------~~l~~~~~g~~~~~----------------------~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~ 146 (319)
....+ ....+++++++++. ...+..|++||. +++...... +...
T Consensus 117 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-------~~~~ 189 (388)
T 3pe7_A 117 VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-------ENQW 189 (388)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-------ESSC
T ss_pred eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-------CCcc
Confidence 22222 11234788887663 223468999994 454433221 2234
Q ss_pred ceeEEEeC-CCeEEEEeCC------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeC-
Q psy13998 147 PHYIAVSN-TNRVIVSDSN------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDS- 217 (319)
Q Consensus 147 ~~~l~~~~-~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~- 217 (319)
+..++++| +|+.++.... ...|.+++.++.. ...+.. ..........+++|+|+ ++++..
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~~l~~----~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-------MRKVKT----HAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-------CEESCC----CCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-------eEEeee----CCCCcccccceECCCCCEEEEEecC
Confidence 57899999 9876554332 3478888876531 111110 00001244578999996 433332
Q ss_pred CC---CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEe---------CCCCEEEEEcCCCceEEeeccc
Q psy13998 218 NN---HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGD---------SGNNRIQIFTPDGQFLRAFGCW 285 (319)
Q Consensus 218 ~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~---------~~~~~i~~~~~~g~~~~~~~~~ 285 (319)
.. ..|++||..+.....+............+.+++|+|+|+.++.. ..+..|++|+.++..+..+...
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 22 24999997543332221100000011124556899998644432 4567999999776555555221
Q ss_pred CCC-----CCCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 286 GSG-----DGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 286 ~~~-----~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
... ......+..++|+|||+ ++++...++...+|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 100 00011467789999998 55566566666654
No 221
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=99.67 E-value=1.3e-13 Score=110.47 Aligned_cols=238 Identities=15% Similarity=0.174 Sum_probs=148.3
Q ss_pred CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE-------ecCceeeEEcCC----CcEEEEcCC---C--
Q psy13998 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-------FTWPRGIAVGPD----NSIVVADSS---N-- 118 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~----g~~~~~~~~---~-- 118 (319)
+..|++|+++|+|++|++... ++|++ ++......+.. ...+.+|+++|+ +.+|++... +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~-g~I~~----~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERP-GRLVL----ISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETT-TEEEE----ECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCCeEEEEcCCCeEEEEeCC-CEEEE----EeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 788999999999999999876 89998 65321112221 236899999997 778887653 3
Q ss_pred --CeEEEEcCCCc---E--EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-------------CCEEEEEecCCcee
Q psy13998 119 --HRVQVFQSDGT---F--VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVNGRVF 178 (319)
Q Consensus 119 --~~i~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-------------~~~i~~~~~~~~~~ 178 (319)
.+|..|+.++. . ...+.. +......+.+..|++.|+|.+|++.+. .++|..++.++...
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~-~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLID-GIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEE-EEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred cceEEEEEEECCCCcCcCccEEEEE-cCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 67888885432 1 111100 000122345788999999999998643 25788777766321
Q ss_pred eec---CceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCe---EEEEeCCCCEE---EE--eCCCCCCc----
Q psy13998 179 QSD---GTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHR---VQIFDVNGRVI---TS--FGSEGSEE---- 242 (319)
Q Consensus 179 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~---i~~~~~~~~~~---~~--~~~~~~~~---- 242 (319)
..+ ...+. ...+..|.++++++ +|++|+++...+. |.+....+..- .. ....+...
T Consensus 182 ~~npf~~~~i~--------a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 253 (354)
T 3a9g_A 182 ADNPFPNSPIW--------SYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVID 253 (354)
T ss_dssp TTSSSTTCCEE--------EECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred CCCCCCCCcEE--------EEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEee
Confidence 100 00011 11246789999999 7899999886543 44443221000 00 00000000
Q ss_pred --ccccCcceEEE-------cCCCcEEEEeCCCCEEEEEcCC--CceE--EeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998 243 --GQLKFPRGVAV-------DDQGYISVGDSGNNRIQIFTPD--GQFL--RAFGCWGSGDGEFKGLEGVAVMSNGNILVC 309 (319)
Q Consensus 243 --~~~~~~~~i~~-------~~~g~~~v~~~~~~~i~~~~~~--g~~~--~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~ 309 (319)
.....|.++++ ..+|.+|++....++|..++.+ |+.. ..+. ......|.++++.|||.+|++
T Consensus 254 ~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----~~~~~rp~~v~~~pDG~lyv~ 328 (354)
T 3a9g_A 254 TGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----KNVFGRLRDVVIDDDGGILIS 328 (354)
T ss_dssp CTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----TTTSCCEEEEEECTTSCEEEE
T ss_pred cCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----cCCCCCeeEEEECCCCcEEEE
Confidence 11235889999 3578999999999999999965 3332 1221 123567999999999999998
Q ss_pred eC
Q psy13998 310 DR 311 (319)
Q Consensus 310 ~~ 311 (319)
+.
T Consensus 329 ~~ 330 (354)
T 3a9g_A 329 TS 330 (354)
T ss_dssp EC
T ss_pred Ee
Confidence 85
No 222
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.66 E-value=2.5e-13 Score=103.03 Aligned_cols=197 Identities=11% Similarity=0.070 Sum_probs=137.2
Q ss_pred CceeeEEcCCCcEEEEcC--CCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998 99 WPRGIAVGPDNSIVVADS--SNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG 175 (319)
Q Consensus 99 ~~~~l~~~~~g~~~~~~~--~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~ 175 (319)
.++++++++++.+|++.+ .++.|.++| .+++.+..+... ....+.+++++ .+++|++...++.+.++|..+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-----~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-----DSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-----TTCCEEEEEEE-TTEEEEEETTCSEEEEEETTT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-----CCcceEEEEEe-CCEEEEEEecCCEEEEEECCC
Confidence 468999999888999865 367999999 678888877532 12344567776 468999999999999999875
Q ss_pred ceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCC-CEEEEeCCCCCCcccccCcceEEE
Q psy13998 176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAV 253 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~ 253 (319)
. +.+..+... .+.+..++++| ++|+++ .++.|.++|+.. +.+..+..... ......++.+.+
T Consensus 96 ~------~v~~~i~~g--------~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~ 159 (266)
T 2iwa_A 96 L------SNIKNFTHQ--------MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEY 159 (266)
T ss_dssp T------EEEEEEECC--------SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEE
T ss_pred C------cEEEEEECC--------CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEE
Confidence 3 455554221 12234455555 678777 588999999754 55555532111 112335778888
Q ss_pred cCCCcEEEEeCCCCEEEEEcC-CCceEEeecccC-------CCCCCCCCcceEEEccCCc-EEEEeCCCCeEEe
Q psy13998 254 DDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWG-------SGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQV 318 (319)
Q Consensus 254 ~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~-------~~~~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v 318 (319)
. +|++|+....++.|.+.|+ +|+.+..+...+ ........+++|+++|+++ +|+++...+.+.+
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 7 7899999988999999995 788888774321 0011224679999999986 9999988777653
No 223
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.66 E-value=1.2e-14 Score=133.32 Aligned_cols=233 Identities=14% Similarity=0.085 Sum_probs=154.0
Q ss_pred cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccc-eeeE---EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc
Q psy13998 54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN-CVFL---AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT 129 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~ 129 (319)
|...+.++.|+++ .+++++..++.+.+ |..... +... ........+++|+|+.++.. .++.|++|+..+.
T Consensus 202 ~~~~v~~~~~s~d-~l~~~~~~dg~~~l----~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 202 MSTHVSSPVIVGH-RIYFITDIDGFGQI----YSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp CSSCCEEEEEETT-EEEEEECTTSSCEE----EEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred CCCcccceEEeCC-EEEEEEeccCceEE----EEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCce
Confidence 3456677888877 77777777888888 544321 1112 22234567899999855554 4789999996555
Q ss_pred EEEEecCCCccC-----CCCCCceeEEEe-CCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCC-Cce
Q psy13998 130 FVGKFGSMGNKA-----GQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLE-HPH 202 (319)
Q Consensus 130 ~~~~~~~~~~~~-----~~~~~~~~l~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 202 (319)
.+..+....... .+...+..++|+ |+|+.++... ++.+.+|+..+. ... .+ ..+.. .+.
T Consensus 276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~------~~~-~~------~~~~~~~~~ 341 (1045)
T 1k32_A 276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT------YVL-KV------PEPLRIRYV 341 (1045)
T ss_dssp CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS------BEE-EC------SCCSCEEEE
T ss_pred EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC------ceE-Ec------cCCCcceEE
Confidence 444442211000 012357899999 9998666554 688999988643 211 11 11222 456
Q ss_pred eEEEcCCCcEEEEeCCCCeEE-EEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEE
Q psy13998 203 YIAVSNTNRVIVSDSNNHRVQ-IFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLR 280 (319)
Q Consensus 203 ~~~~~~~g~~~v~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~ 280 (319)
.++++ +|+.++..+.+..++ +|+.++.....+ ..+...+..++++|+|+.+++.+.++.|++||. +|+...
T Consensus 342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l------~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~ 414 (1045)
T 1k32_A 342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 414 (1045)
T ss_dssp EECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred eeeEc-CCCeEEEEECCCceEEEEECCCCCceEe------cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE
Confidence 78888 887666555577888 999876655555 223346788999999998888888999999996 455554
Q ss_pred eecccCCCCCCCCCcceEEEccCCcEEEEeCCC----------CeEEeC
Q psy13998 281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN----------HRIQVF 319 (319)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~----------~~i~v~ 319 (319)
.. ..+...+.+++|+|||+++++.+.+ +.|++|
T Consensus 415 ~~------~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 415 IE------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp EE------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred ec------cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 44 3455667899999999977665443 377776
No 224
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.65 E-value=9.4e-14 Score=112.18 Aligned_cols=235 Identities=12% Similarity=0.092 Sum_probs=138.8
Q ss_pred CCcceEEcCCCcEEEEeC----------CCCeEEEeccccccccceeeEEe----------cCceeeEEcCCCcE-EEEc
Q psy13998 57 WPRGIAVGPDNSIVVADS----------SNHRVQVCFPHFDLKTNCVFLAF----------TWPRGIAVGPDNSI-VVAD 115 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~g~~-~~~~ 115 (319)
.| .++++|+|+++++.. .++.|.+ ||..+.+....+ ..|..++++|+|+. |++.
T Consensus 52 ~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v----~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n 126 (361)
T 2oiz_A 52 NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEV----WDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN 126 (361)
T ss_dssp EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEE----EETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred CC-ceEECCCCCEEEEEEecccccccCCCCCEEEE----EECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence 46 899999998544432 3567999 888766655433 35889999999974 5554
Q ss_pred CC-CCeEEEEc-CCCcEEEE-ecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998 116 SS-NHRVQVFQ-SDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM 191 (319)
Q Consensus 116 ~~-~~~i~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 191 (319)
.. ++.|.+|| .+++.+.. +... ....+.+.|++ ..+++.+.++++..++.+. +++........
T Consensus 127 ~~~~~~v~v~d~~~~~~~~~~i~~~--------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~-----~g~~~~~~~~~ 193 (361)
T 2oiz_A 127 ASPATSIGIVDVAKGDYVEDVTAAA--------GCWSVIPQPNRPRSFMTICGDGGLLTINLGE-----DGKVASQSRSK 193 (361)
T ss_dssp ESSSEEEEEEETTTTEEEEEEGGGT--------TEEEEEECTTSSSEEEEEETTSSEEEEEECT-----TSSEEEEEECC
T ss_pred CCCCCeEEEEECCCCcEEEEEecCC--------CcceeEEcCCCCeeEEEECCCCcEEEEEECC-----CCcEeeecccc
Confidence 43 67999999 56666666 5321 12335566654 5677777778887777642 12222111000
Q ss_pred CCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCE---EEEeCCCCC--Cc-c-cccCcceEEEcCCC-cEEEEe
Q psy13998 192 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV---ITSFGSEGS--EE-G-QLKFPRGVAVDDQG-YISVGD 263 (319)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~---~~~~~~~~~--~~-~-~~~~~~~i~~~~~g-~~~v~~ 263 (319)
........|..+...+++..++....++.++++|..+.. ...+..... .. . ....+..++++|++ ++|++.
T Consensus 194 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~ 272 (361)
T 2oiz_A 194 -QMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM 272 (361)
T ss_dssp -CCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred -ceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence 000011123333445555444434457789999965322 122210000 00 0 01122348999995 577765
Q ss_pred C----------CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 264 S----------GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 264 ~----------~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
. ..+.|.+|| .+++.+..+ ..+. |++|+++|||+++++... +.|.+|
T Consensus 273 ~~~~~~~~~~~~~~~v~viD~~t~~~v~~i------~~~~--p~~ia~spdg~~l~v~n~-~~v~v~ 330 (361)
T 2oiz_A 273 HPDGKEGTHKFPAAEIWVMDTKTKQRVARI------PGRD--ALSMTIDQQRNLMLTLDG-GNVNVY 330 (361)
T ss_dssp ESSCCTTCTTCCCSEEEEEETTTTEEEEEE------ECTT--CCEEEEETTTTEEEEECS-SCEEEE
T ss_pred ccCCCcccccCCCceEEEEECCCCcEEEEE------ecCC--eeEEEECCCCCEEEEeCC-CeEEEE
Confidence 4 145899999 467788777 3333 999999999995555555 888886
No 225
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.64 E-value=9e-15 Score=120.97 Aligned_cols=199 Identities=12% Similarity=-0.001 Sum_probs=129.8
Q ss_pred CceeeEEcCCCcEEEEcCCCCeEEEEcCCC-----------cEEEEecCCCccCCCCCCceeEEEeCCCeEEE----EeC
Q psy13998 99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDG-----------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV----SDS 163 (319)
Q Consensus 99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~----~~~ 163 (319)
..+.+++++++.++++++.++ +.+|+... ..+...... ....+...+.+++|+++|++++ +++
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQG-LLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCC-EEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcc-ccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 457889999888777776665 77765211 011111000 0011224579999999998888 788
Q ss_pred CCCEEEEEecCCceee--ecCceeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCC
Q psy13998 164 NNHRVQIFDVNGRVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVN-GRVITSFGSEG 239 (319)
Q Consensus 164 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~ 239 (319)
.++.|++||+...... ...+.+.... ....|...+.+++++|+ +.++++++.++.|++||.. +......
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~---- 188 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHK---LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT---- 188 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEE---CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE----
T ss_pred CCceEEEEEccccccCCcCCcceeeeee---ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec----
Confidence 8999999997632000 0000111110 11335567899999997 7899999999999999964 4333333
Q ss_pred CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCC-CCCCCCcceEEEccCCcEEE
Q psy13998 240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG-DGEFKGLEGVAVMSNGNILV 308 (319)
Q Consensus 240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~v 308 (319)
..+...+.+++|+|+|+++++++.++.|++||..++....+...... ..+...+.+++|++++.+++
T Consensus 189 --~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 189 --LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp --ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred --cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 34556789999999999999999999999999877766655322111 11233688999999877553
No 226
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.64 E-value=6e-15 Score=130.29 Aligned_cols=276 Identities=12% Similarity=0.030 Sum_probs=154.6
Q ss_pred cccCCCccchhccccceeeeecccCCCCCcC-------C----CCcceEEcCCCcEEEEeCC---------CCeEEEecc
Q psy13998 25 GQVGTTPRSQYLQKRRLQFKIGSRGSEPGCF-------T----WPRGIAVGPDNSIVVADSS---------NHRVQVCFP 84 (319)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~----~~~~v~~~~~g~~~~~~~~---------~~~v~~~~~ 84 (319)
..+.|+|++.++.... +..+..|+...+.. . .+.+++|+|||+.++.++. ++.|++
T Consensus 19 ~~~~~s~dg~~~~~~~-d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~--- 94 (719)
T 1z68_A 19 FFPNWISGQEYLHQSA-DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI--- 94 (719)
T ss_dssp CCCEESSSSEEEEECT-TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE---
T ss_pred CccEECCCCeEEEEcC-CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE---
Confidence 3677899987665542 44555554443321 1 3789999999998776654 689999
Q ss_pred cccccccee---eEEecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCccC----CC---------CCCc
Q psy13998 85 HFDLKTNCV---FLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNKA----GQ---------LEHP 147 (319)
Q Consensus 85 ~~~~~~~~~---~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~----~~---------~~~~ 147 (319)
|+..++.. ......+..++|+|||+.++... ++.|++|+. .++.. .+...+... ++ ....
T Consensus 95 -~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 95 -YDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-QITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp -EETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred -EECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-EEecCCCcCCeEcccccceeeeecccCc
Confidence 88876654 22224567899999998665553 679999995 44443 332221100 00 0122
Q ss_pred eeEEEeCCCeEEEEeCCCC----------------------------------EEEEEecCCceeeecCceeeeecccCC
Q psy13998 148 HYIAVSNTNRVIVSDSNNH----------------------------------RVQIFDVNGRVFQSDGTFVGKFGSMGN 193 (319)
Q Consensus 148 ~~l~~~~~g~~~~~~~~~~----------------------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (319)
.+++|+|||+.++..+.+. .|.+||+.+.... . ...+.....
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~---~-~~~~~~~~~ 247 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV---G-PQEVPVPAM 247 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH---C-CEECCCCHH
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc---c-eeEccCCcc
Confidence 5899999998777654321 6777777653110 0 000100000
Q ss_pred cCCCCCCceeEEEcCCCcEEEEeC--CC--CeEEEEe----CCCCEEEEeCCCCCCcccccCcc-----eEEEcCCCc-E
Q psy13998 194 KAGQLEHPHYIAVSNTNRVIVSDS--NN--HRVQIFD----VNGRVITSFGSEGSEEGQLKFPR-----GVAVDDQGY-I 259 (319)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~~v~~~--~~--~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~g~-~ 259 (319)
...+......++++|+++++++.. .. ..|++|| ..+.....+.. .....+...+. .++|+|+|+ +
T Consensus 248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE-HIEESRTGWAGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE-EEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe-cccccCCceEccccCCccEECCCCCeE
Confidence 012334457889999998776632 22 3588888 65432222210 00001111222 678999997 3
Q ss_pred EE-EeCCC--CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeCC----CCeEEeC
Q psy13998 260 SV-GDSGN--NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRE----NHRIQVF 319 (319)
Q Consensus 260 ~v-~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~~----~~~i~v~ 319 (319)
++ +...+ ..|++|+.++.....+ ..+...+.++.+. +++ +++++.. ++.+++|
T Consensus 327 ~~~~~~~~g~~~l~~~~~~~~~~~~l------t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 327 YKIFSDKDGYKHIHYIKDTVENAIQI------TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp EEEEECTTSCEEEEEESSCSTTCEEC------SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred EEEEEccCCceEEEEEECCCCceEec------ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence 33 44443 3788888655444444 2223345566666 655 5666554 4555554
No 227
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.62 E-value=3.1e-12 Score=96.48 Aligned_cols=213 Identities=13% Similarity=0.121 Sum_probs=141.1
Q ss_pred cCceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCc
Q psy13998 98 TWPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR 176 (319)
Q Consensus 98 ~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~ 176 (319)
..+.+++++|++ .+|++...++.|+.+|.+++.++.+... ....+.+|++.+++.++++...++.+.++++...
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~-----g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLD-----FVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECS-----SCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecC-----CCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 367999999875 5777666788999999889988887532 2356799999999998898888899999887542
Q ss_pred eeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCC-eEEEEe--CCCCEEEEeCCCC-CCcccccCcceE
Q psy13998 177 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNH-RVQIFD--VNGRVITSFGSEG-SEEGQLKFPRGV 251 (319)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~-~i~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~i 251 (319)
... ..+............-....+|++++.+ ++|++...+. .|+.|+ ..+..+....... ........+.++
T Consensus 102 ~~i---~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 102 SEV---KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CCE---EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred Cee---eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 100 1111111100001122345899999977 6777665544 677777 2222112111000 001123457899
Q ss_pred EEcCC-CcEEEEeCCCCEEEEEcCCCceEEeecccCC---CCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 252 AVDDQ-GYISVGDSGNNRIQIFTPDGQFLRAFGCWGS---GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 252 ~~~~~-g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+++|. +++|+....+..|.++|.+|+.+..+..... .......|.+|+++++|++|+++-.| .+.+|
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f 249 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYRF 249 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc-eEEEE
Confidence 99987 6899999999999999999998877754321 11234689999999999999986554 55543
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.62 E-value=6.7e-13 Score=106.90 Aligned_cols=228 Identities=12% Similarity=0.112 Sum_probs=146.0
Q ss_pred CCCc-EEEEeCCCCeEEEeccccccccc----eeeEEe-----------cCceeeEEcCCCcEEEEcCCC------CeEE
Q psy13998 65 PDNS-IVVADSSNHRVQVCFPHFDLKTN----CVFLAF-----------TWPRGIAVGPDNSIVVADSSN------HRVQ 122 (319)
Q Consensus 65 ~~g~-~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~-----------~~~~~l~~~~~g~~~~~~~~~------~~i~ 122 (319)
.+++ +++.+-.+++|.+ +|..+. .....+ ..|+.+...|+| ++++...+ +.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~v----iD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYI----IDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEEEEEBTTTCCEEE----EECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred ccCCEEEEccCCCCeEEE----EECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 5666 6777888999999 887544 333322 378889999999 88876554 7899
Q ss_pred EEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-------------------CCCEEEEEecCCceeeecC
Q psy13998 123 VFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-------------------NNHRVQIFDVNGRVFQSDG 182 (319)
Q Consensus 123 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-------------------~~~~i~~~~~~~~~~~~~~ 182 (319)
++| .+++.+.++.... ........+-++|+++.+++.. ..++|.+||..+.
T Consensus 168 vlD~~T~~v~~~~~~~~---~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~------ 238 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDR---GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR------ 238 (462)
T ss_dssp EECTTTCCEEEECCSBC---TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT------
T ss_pred EEECCCCeEEEEEccCC---CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC------
Confidence 999 5688888885432 1223345688899998777763 3689999999853
Q ss_pred ceeeeecccCCcCCCCCCceeEEE--cCCCc-EEEEeC-----CCCeEEEEeCC-CCE--EEE--eCCCCC---Cc---c
Q psy13998 183 TFVGKFGSMGNKAGQLEHPHYIAV--SNTNR-VIVSDS-----NNHRVQIFDVN-GRV--ITS--FGSEGS---EE---G 243 (319)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~-~~v~~~-----~~~~i~~~~~~-~~~--~~~--~~~~~~---~~---~ 243 (319)
+.+..+... .....|..+.+ +|+++ .|++.. .++.|.+|..+ |.. ... +..... .. .
T Consensus 239 k~~~tI~vg----~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 239 KRIHSLTLG----EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp EEEEEEESC----TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred cEeeEEecC----CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence 344433221 01234666666 89885 456665 67788876643 321 111 111000 00 0
Q ss_pred ----cccCcceEEEcCCCc-EEEEeCCCCEEEEEcCC----CceEEeecccCCC--------CCCCCCcceEEEccCCc-
Q psy13998 244 ----QLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPD----GQFLRAFGCWGSG--------DGEFKGLEGVAVMSNGN- 305 (319)
Q Consensus 244 ----~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~--------~~~~~~~~~l~~~~~g~- 305 (319)
....|.+|.+++||+ +|+++...+.|.+|+.. .+++..+...+.. ......|..++++|||+
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~ 394 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR 394 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred ccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence 024588999999985 89999999999999942 2444444321110 01112599999999998
Q ss_pred EEEEe
Q psy13998 306 ILVCD 310 (319)
Q Consensus 306 ~~v~~ 310 (319)
+|++.
T Consensus 395 LyVaN 399 (462)
T 2ece_A 395 VYVTN 399 (462)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 66666
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.60 E-value=1.4e-12 Score=98.96 Aligned_cols=197 Identities=10% Similarity=0.064 Sum_probs=138.9
Q ss_pred CCCcceEEcCCCcEEEEeCC--CCeEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcCCCCeEEEEc-CC
Q psy13998 56 TWPRGIAVGPDNSIVVADSS--NHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADSSNHRVQVFQ-SD 127 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~ 127 (319)
..+.+++++++|.+|++.+. ++.|.+ +|..+++....+. .+.+++++ .+++|++...++.+.++| .+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~----iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQ----VALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEE----EETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTT
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEE----EECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCC
Confidence 35789999998899998753 679999 9998887776543 33567776 358999999999999999 56
Q ss_pred CcEEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
.+.+..+... .+.+..+.++| .+|++. .++.+.++|..+. +.+..+..... ......++.+.+
T Consensus 96 ~~v~~~i~~g--------~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~------~v~~~I~Vg~~-~~p~~~~nele~ 159 (266)
T 2iwa_A 96 LSNIKNFTHQ--------MKDGWGLATDGKILYGSD-GTSILYEIDPHTF------KLIKKHNVKYN-GHRVIRLNELEY 159 (266)
T ss_dssp TEEEEEEECC--------SSSCCEEEECSSSEEEEC-SSSEEEEECTTTC------CEEEEEECEET-TEECCCEEEEEE
T ss_pred CcEEEEEECC--------CCCeEEEEECCCEEEEEC-CCCeEEEEECCCC------cEEEEEEECCC-CcccccceeEEE
Confidence 7777777422 12233344454 677776 5889999998864 33333321110 112235778888
Q ss_pred cCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCC-------CcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcC
Q psy13998 207 SNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGS-------EEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTP 274 (319)
Q Consensus 207 ~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~ 274 (319)
. +|++|+....++.|.++|+ +++.+..+...+. .......|.+|+++|++ ++|+++...++|++++.
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 7 7899999888899999996 6777777743210 00112367899999986 69999999999999984
No 230
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.60 E-value=2.8e-12 Score=108.96 Aligned_cols=230 Identities=13% Similarity=0.131 Sum_probs=149.9
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccc--cceeeEEe---cCceeeEEc----CCCc-EEEEcCCCCeEEEEc
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLK--TNCVFLAF---TWPRGIAVG----PDNS-IVVADSSNHRVQVFQ 125 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~---~~~~~l~~~----~~g~-~~~~~~~~~~i~~~~ 125 (319)
..|+++.++|+|+++++++.++.|.+ ||+. +......+ ..|.+++++ |+|+ +|++....+.|.++|
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~v----iD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD 272 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNM----IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD 272 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEE----EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEE----EECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence 36789999999997666677899999 8874 55554444 368899999 6886 677777789999999
Q ss_pred -CCCcEEEEecCCCccCC----C-CCCceeEEEeCCC-eEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998 126 -SDGTFVGKFGSMGNKAG----Q-LEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198 (319)
Q Consensus 126 -~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (319)
.+.+.+..+...+.... + ...+.++..++++ .+++.....++|.++|...... ..+..+ ...
T Consensus 273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----~~v~~i-------~~~ 341 (567)
T 1qks_A 273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN----LKTTEI-------SAE 341 (567)
T ss_dssp TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE----EEEEEE-------ECC
T ss_pred CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc----ceeeee-------ecc
Confidence 66777777654321111 1 1245677777765 5566677789999998764210 011111 112
Q ss_pred CCceeEEEcCCCcEE-EEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCc-ceEE-EcCC-CcEEEEeC-CCCEEEEE
Q psy13998 199 EHPHYIAVSNTNRVI-VSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFP-RGVA-VDDQ-GYISVGDS-GNNRIQIF 272 (319)
Q Consensus 199 ~~~~~~~~~~~g~~~-v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~i~-~~~~-g~~~v~~~-~~~~i~~~ 272 (319)
..+.++.++++|+++ +++..++.|.++|.. ++.+..+...+ ....| .++. ++|+ +.+|++.. .++.|.++
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg----~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG----QTPHPGRGANFVHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS----SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC----cCCCCccceeeECCCCCcEEEeCCCCCCeEEEe
Confidence 457789999999754 566678899999964 55554442101 11122 3444 5787 56777764 56899999
Q ss_pred cCC--------CceEEeecccCCCCCCCCCcceEEEccCCc-EEEEe
Q psy13998 273 TPD--------GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCD 310 (319)
Q Consensus 273 ~~~--------g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~ 310 (319)
+.+ .+.++.+. .....+..|..+|+++ +|+..
T Consensus 418 d~~~~~~~~~~~kvv~~i~------~~g~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 418 GTDPEGHPDNAWKILDSFP------ALGGGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp ECCTTTCTTTBTSEEEEEE------CSCSCCCCEECCTTCSEEEEEC
T ss_pred cCCCCCCccccCEEEEEEe------cCCCCCEEEEeCCCCCeEEEec
Confidence 954 35666663 2223345678899997 56655
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.59 E-value=1.3e-12 Score=104.06 Aligned_cols=193 Identities=9% Similarity=0.065 Sum_probs=130.6
Q ss_pred CceeeEEcCC-CcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998 99 WPRGIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 177 (319)
Q Consensus 99 ~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~ 177 (319)
.+.+.+++++ +.+|+++..++.|.+|+.++.....+.. ...+.+++++++|++|++. ...|.+|+..+.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-------~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g- 119 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-------PFMGSALAKISDSKQLIAS--DDGLFLRDTATG- 119 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-------SSCEEEEEEEETTEEEEEE--TTEEEEEETTTC-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-------CCcceEEEEeCCCeEEEEE--CCCEEEEECCCC-
Confidence 4567889987 5788888888999999976655544422 1357899999999998876 345899998643
Q ss_pred eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceE
Q psy13998 178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGV 251 (319)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (319)
++........ ......+..++++++|++|++... .+.|++++ +++... + ......+.++
T Consensus 120 -----~~~~~~~~~~--~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~-~------~~~~~~~~~i 184 (326)
T 2ghs_A 120 -----VLTLHAELES--DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTK-L------FADISIPNSI 184 (326)
T ss_dssp -----CEEEEECSST--TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEE-E------EEEESSEEEE
T ss_pred -----cEEEEeeCCC--CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEE-e------eCCCcccCCe
Confidence 2211111000 011235788999999999987642 36788888 654432 2 1233457899
Q ss_pred EEcCCCc-EEEEeCCCCEEEEEcC---CC-ceE--EeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 252 AVDDQGY-ISVGDSGNNRIQIFTP---DG-QFL--RAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 252 ~~~~~g~-~~v~~~~~~~i~~~~~---~g-~~~--~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
+++++|+ +|+++..++.|.+|+. +| +.. +.+... ......|.+++++++|++|++...++.|.+|
T Consensus 185 ~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~---~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 185 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS---TGIKGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC---TTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred EEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC---CCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 9999985 7888888899999995 35 311 111100 1233468899999999999988766777654
No 232
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.59 E-value=1.2e-12 Score=106.52 Aligned_cols=236 Identities=13% Similarity=0.134 Sum_probs=143.0
Q ss_pred CCCc-EEEEeCCC----CeEEEeccccccccceeeEEec---CceeeEEcCCCc-EEEEcC---------CCCeEEEEc-
Q psy13998 65 PDNS-IVVADSSN----HRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS-IVVADS---------SNHRVQVFQ- 125 (319)
Q Consensus 65 ~~g~-~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~-~~~~~~---------~~~~i~~~~- 125 (319)
++++ +|+++..+ +.|.+ +|..+.+.+..+. .| +++++|+|+ +|++.. .++.|.++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsV----ID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFV----IDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEE----EETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEE----EECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 3554 78888765 79999 8988877776553 67 999999986 677753 356899999
Q ss_pred CCCcEEEEecCCCcc-CCCCCCceeEEEeCCCe-EEEEeCC-CCEEEEEecCCceeeecCceeeeeccc-----------
Q psy13998 126 SDGTFVGKFGSMGNK-AGQLEHPHYIAVSNTNR-VIVSDSN-NHRVQIFDVNGRVFQSDGTFVGKFGSM----------- 191 (319)
Q Consensus 126 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~-~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~----------- 191 (319)
.+++.+..+...+.. ......|..++++|+|+ +|++... ++.|.++|....... ..+...
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv------~~I~v~g~~~~~p~g~~ 230 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD------RMLDVPDCYHIFPASPT 230 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE------EEEECCSEEEEEEEETT
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE------EEEEcCCceeeccCCCc
Confidence 677777776532110 11124689999999985 5566554 688999999864321 111100
Q ss_pred --------CC----------c-------CCCCCCc--eeEEEcCCCc-EEEEeCCCCeEEEEeCCCCEEEEeCCCC----
Q psy13998 192 --------GN----------K-------AGQLEHP--HYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVITSFGSEG---- 239 (319)
Q Consensus 192 --------~~----------~-------~~~~~~~--~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~---- 239 (319)
+. . ......| ..+.+.+++. ++++. ..+.++++|..+..+.......
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~V~ViD~~~~~~~v~~~~~~~~~ 309 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGKIFQADLTAEGATFRAPIEALTE 309 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSEEEEEEECSSCEEECCCEESSCT
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCcEEEEeccCCceEEeeeeeeccc
Confidence 00 0 0000011 1123455543 34433 3567888886543332221100
Q ss_pred CCcccccCcc---eEEEcCCC-cEEEEeC---------CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998 240 SEEGQLKFPR---GVAVDDQG-YISVGDS---------GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 240 ~~~~~~~~~~---~i~~~~~g-~~~v~~~---------~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 305 (319)
........|. .+++++++ ++|++.. ..+.|.++| .+.+.+..+.. ...|++|+++|||+
T Consensus 310 ~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-------g~~P~gia~spDg~ 382 (426)
T 3c75_H 310 AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-------GHEIDSINVSQDAE 382 (426)
T ss_dssp TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------EEEECEEEECCSSS
T ss_pred cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-------CCCcCeEEEccCCC
Confidence 0000111233 38999996 5787753 246899999 46788887731 23699999999997
Q ss_pred --EEEEeCCCCeEEeC
Q psy13998 306 --ILVCDRENHRIQVF 319 (319)
Q Consensus 306 --~~v~~~~~~~i~v~ 319 (319)
+|++...++.|.++
T Consensus 383 ~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 383 PLLYALSAGTQTLHIY 398 (426)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred EEEEEEcCCCCeEEEE
Confidence 56666578888764
No 233
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=1.7e-12 Score=103.77 Aligned_cols=236 Identities=14% Similarity=0.114 Sum_probs=141.0
Q ss_pred CCCcceEEcCCCc-EEEEeC---------CCCeEEEeccccccccceeeEEec-----------CceeeEEcCCCc-EEE
Q psy13998 56 TWPRGIAVGPDNS-IVVADS---------SNHRVQVCFPHFDLKTNCVFLAFT-----------WPRGIAVGPDNS-IVV 113 (319)
Q Consensus 56 ~~~~~v~~~~~g~-~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~g~-~~~ 113 (319)
..|. ++++|+|+ +|+++. .++.|.+ ||..+......+. .|..++++|||+ +|+
T Consensus 79 ~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv----iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyV 153 (386)
T 3sjl_D 79 FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEV----FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF 153 (386)
T ss_dssp SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE----ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE
T ss_pred CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEE----EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEE
Confidence 3465 99999998 566653 3568999 8888877666442 588999999997 566
Q ss_pred EcCC-CCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998 114 ADSS-NHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM 191 (319)
Q Consensus 114 ~~~~-~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 191 (319)
+... ++.|.++| .+++.+.++...+. ...+....+.|++.+.|+++..+++... ++.......
T Consensus 154 an~~~~~~VsVID~~t~~vv~tI~v~g~---------~~~~P~g~~~~~~~~~DG~~~~v~~~~~-----g~v~~~~~~- 218 (386)
T 3sjl_D 154 YQFSPAPAVGVVDLEGKAFKRMLDVPDC---------YHIFPTAPDTFFMHCRDGSLAKVAFGTE-----GTPEITHTE- 218 (386)
T ss_dssp EECSSSCEEEEEETTTTEEEEEEECCSE---------EEEEEEETTEEEEEETTSCEEEEECCSS-----SCCEEEECC-
T ss_pred EEcCCCCeEEEEECCCCcEEEEEECCCc---------ceeecCCCceeEEECCCCCEEEEECCCC-----CeEEEeecc-
Confidence 6653 68999999 67777877754321 1122223344555556666666665431 111110000
Q ss_pred CCcCCCCCCceeEEEc-CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCC-CCc-----c-cccCcceEEEcCCC-cEEEE
Q psy13998 192 GNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG-SEE-----G-QLKFPRGVAVDDQG-YISVG 262 (319)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-----~-~~~~~~~i~~~~~g-~~~v~ 262 (319)
..............++ ++|+++++.. ++.++++|..+.......... ... + .......+++++++ ++|++
T Consensus 219 ~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~ 297 (386)
T 3sjl_D 219 VFHPEDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL 297 (386)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred eeccccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEE
Confidence 0000000000113554 6887666544 689999998654322221100 000 0 01122347888886 57777
Q ss_pred eC---------CCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCc--EEEEeCCCCeEEeC
Q psy13998 263 DS---------GNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQVF 319 (319)
Q Consensus 263 ~~---------~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~v~~~~~~~i~v~ 319 (319)
.. ..++|.++| .+++.++.+.. ...+++|++++|++ +|+++..++.|.++
T Consensus 298 ~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-------g~~~~~lavs~D~~~~ly~tn~~~~~VsVi 359 (386)
T 3sjl_D 298 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-------GHEIDSINVSQDEKPLLYALSTGDKTLYIH 359 (386)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------EEEECEEEECSSSSCEEEEEETTTTEEEEE
T ss_pred eccccccccCCCCCEEEEEECCCCeEEEEEEC-------CCCcceEEECCCCCeEEEEEcCCCCeEEEE
Confidence 53 136899999 57888888732 23689999999986 67778888888764
No 234
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=3.7e-12 Score=108.19 Aligned_cols=228 Identities=12% Similarity=0.104 Sum_probs=150.1
Q ss_pred cCCCcEEEEeCCCCeEEEeccccccccceeeEEec---CceeeEEcCCCcEEEEcCCCCeEEEEcC---CCcEEEEecCC
Q psy13998 64 GPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNSIVVADSSNHRVQVFQS---DGTFVGKFGSM 137 (319)
Q Consensus 64 ~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~~~~~~~~~~~i~~~~~---~~~~~~~~~~~ 137 (319)
++.+.++++...+++|.+ +|..+.+.+..+. .|++++++|+|+.+++++.++.|.+||. +++.+..+..
T Consensus 164 d~~~~~~V~~~~~~~V~v----iD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~- 238 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIAL----IDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI- 238 (567)
T ss_dssp CGGGEEEEEETTTTEEEE----EETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-
T ss_pred CCCceEEEEeCCCCeEEE----EECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-
Confidence 345568999999999999 9988877666543 6789999999986665667889999996 6677766632
Q ss_pred CccCCCCCCceeEEEe----CCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcC-C---C-CCCceeEEEc
Q psy13998 138 GNKAGQLEHPHYIAVS----NTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA-G---Q-LEHPHYIAVS 207 (319)
Q Consensus 138 ~~~~~~~~~~~~l~~~----~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~~~~~~~ 207 (319)
-..|.+++++ |+|+ +|+++...+.+.++|..+. +.+..+...+... . + ...+.++..+
T Consensus 239 ------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s 306 (567)
T 1qks_A 239 ------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL------EPKKIQSTRGMTYDEQEYHPEPRVAAILAS 306 (567)
T ss_dssp ------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC------CEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred ------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC------cEEEEEeccccccccccccCCCceEEEEEc
Confidence 1357899999 6885 5667777899999997653 3443332211000 0 1 1245667777
Q ss_pred CCC-cEEEEeCCCCeEEEEeCCCC-E--EEEeCCCCCCcccccCcceEEEcCCCc-EEEEeCCCCEEEEEcC-CCceEEe
Q psy13998 208 NTN-RVIVSDSNNHRVQIFDVNGR-V--ITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTP-DGQFLRA 281 (319)
Q Consensus 208 ~~g-~~~v~~~~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~-~g~~~~~ 281 (319)
+++ .+++.....+.|.++|.... . +..+ .....+.++.|+|+|+ +|+++..+++|.++|. +++++..
T Consensus 307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 307 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEecCCCeEEEEecCCCccceeeee-------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence 776 45566667899999996432 2 2222 1123567899999997 5566778899999994 5666665
Q ss_pred ecccCCCCCCCCCc-ceEE-EccC-CcEEEEeC-CCCeEEeC
Q psy13998 282 FGCWGSGDGEFKGL-EGVA-VMSN-GNILVCDR-ENHRIQVF 319 (319)
Q Consensus 282 ~~~~~~~~~~~~~~-~~l~-~~~~-g~~~v~~~-~~~~i~v~ 319 (319)
+... +....| .+.. ++|+ +.+|++.. .++.|.++
T Consensus 380 i~vg----g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 380 EDTG----GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp EECS----SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred Eecc----CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEe
Confidence 5210 111112 3444 4777 45777654 45777663
No 235
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=99.58 E-value=1.9e-13 Score=105.66 Aligned_cols=210 Identities=13% Similarity=0.078 Sum_probs=137.6
Q ss_pred CCCCcceEEcC-CCcEEEEeCCCCeEEEeccccccccceeeE-Eec----------CceeeEE---cCCCcEEEEcC---
Q psy13998 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFL-AFT----------WPRGIAV---GPDNSIVVADS--- 116 (319)
Q Consensus 55 ~~~~~~v~~~~-~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~----------~~~~l~~---~~~g~~~~~~~--- 116 (319)
.-.|.++.|++ ++.+|++.-..++|.. |+...+.... .+. .+.+|.+ ++++++|++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~----~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEV----YNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEE----ECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEE----EcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 45789999987 7789999989999999 6665332211 222 3579999 68888888522
Q ss_pred ----------CCCeEEEEcCC----CcEEEEecCCCccCC-------CCCCceeEEEeCCCeEEEEeCCC-CEEEEEecC
Q psy13998 117 ----------SNHRVQVFQSD----GTFVGKFGSMGNKAG-------QLEHPHYIAVSNTNRVIVSDSNN-HRVQIFDVN 174 (319)
Q Consensus 117 ----------~~~~i~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~g~~~~~~~~~-~~i~~~~~~ 174 (319)
.+..+..||.. ++.+..........+ ....+++++++++|+.|++++.. +.|.+++.+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 25779999955 776655543211111 12347899999999999999988 999999988
Q ss_pred CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCC--CCCcccccCcceE-
Q psy13998 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSE--GSEEGQLKFPRGV- 251 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i- 251 (319)
|.... .+............+++|+++|+|+++++....+++..+|........+... +. ...+..+.+|
T Consensus 168 G~~~~-------~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~-~~~~~~~dgil 239 (334)
T 2p9w_A 168 GKTVS-------TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGD-FGTLSGTEKIV 239 (334)
T ss_dssp SCCEE-------EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSC-CCCCTTEEEEE
T ss_pred CCEEe-------eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCC-cccccCccccc
Confidence 75221 1111110122235688999999997666665599999999763211012111 11 1234566775
Q ss_pred EEcCCCcE-EEEeCCCCEEEEEcCCC
Q psy13998 252 AVDDQGYI-SVGDSGNNRIQIFTPDG 276 (319)
Q Consensus 252 ~~~~~g~~-~v~~~~~~~i~~~~~~g 276 (319)
....+|++ +|+...++.+.+.+.++
T Consensus 240 p~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 240 TVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEEEETTEEEEEECSST
T ss_pred ccccCCEEEEEEcCCCCEEEEECCCC
Confidence 55557776 77777778888888776
No 236
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.58 E-value=2.8e-12 Score=96.72 Aligned_cols=215 Identities=15% Similarity=0.126 Sum_probs=138.7
Q ss_pred CCCcCCCCcceEEcCCC-cEEEEeCCCCeEEEeccccccccceeeEEe-----cCceeeEEcCCCcEEEEcCCCCeEEEE
Q psy13998 51 EPGCFTWPRGIAVGPDN-SIVVADSSNHRVQVCFPHFDLKTNCVFLAF-----TWPRGIAVGPDNSIVVADSSNHRVQVF 124 (319)
Q Consensus 51 ~~~~~~~~~~v~~~~~g-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~g~~~~~~~~~~~i~~~ 124 (319)
.+|-...+.+|+++|++ .+|+....++.|.. ++.. +..+..+ ..+.+|++.+++.++++...++.+.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~----ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVE----MTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEE----EETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEE----EeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 34555679999999865 57776667889988 7775 4444433 367899999999888888888899998
Q ss_pred c--CCCc--EEEEecCCCccCCCCCCceeEEEeCCC-eEEEEeCCCC-EEEEEecCCceeeecCceeeeecccCCcCCCC
Q psy13998 125 Q--SDGT--FVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNH-RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQL 198 (319)
Q Consensus 125 ~--~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (319)
+ .++. .+......-..........+|++++.+ ++|++...+. .|+.|+ +......-+........ .....
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~~~~~~--~~~~~ 172 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISKDKALQ--RQFTL 172 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEECHHHH--HTCCS
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeecchhhc--ccccc
Confidence 7 3343 223332111011223456899999976 6777655444 566665 21000000111000000 01123
Q ss_pred CCceeEEEcC-CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCC---CcccccCcceEEEcCCCcEEEEeCCCCEEEEEcC
Q psy13998 199 EHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS---EEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274 (319)
Q Consensus 199 ~~~~~~~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~ 274 (319)
..+.+++++| .+++|+....++.+.++|.+|+.+..+..... .......|.+|+++++|++|+++ ..+.+++|.+
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E~n~~y~f~~ 251 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPNRFYRFTP 251 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-TTTEEEEEEC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-CCceEEEEEe
Confidence 4678999997 46899999999999999999997766643321 11234678999999999999995 4568998876
Q ss_pred C
Q psy13998 275 D 275 (319)
Q Consensus 275 ~ 275 (319)
.
T Consensus 252 ~ 252 (255)
T 3qqz_A 252 Q 252 (255)
T ss_dssp -
T ss_pred c
Confidence 4
No 237
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=9.7e-13 Score=105.22 Aligned_cols=271 Identities=11% Similarity=0.082 Sum_probs=159.4
Q ss_pred cchhhhhhhhhhcccccccCCCccchhccccce----------eeeecccCCCCCc---------------CCCCcceEE
Q psy13998 9 NINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRL----------QFKIGSRGSEPGC---------------FTWPRGIAV 63 (319)
Q Consensus 9 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~---------------~~~~~~v~~ 63 (319)
|..+++++.+.....--.+.++|++.++..... ...+..++..... -..|..+++
T Consensus 65 D~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 65 DGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp ETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred ECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence 444555555555222224889999998655431 2233333333221 136899999
Q ss_pred cCCCc-EEEEeCC-CCeEEEeccccccccceeeEEecCceeeEEcCCC-cEEEEcCCCCeEEEEcC--CCcEEEEecCCC
Q psy13998 64 GPDNS-IVVADSS-NHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN-SIVVADSSNHRVQVFQS--DGTFVGKFGSMG 138 (319)
Q Consensus 64 ~~~g~-~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~ 138 (319)
+|||+ +|+++.. ++.|.+ +|..+.+....+.-+.+..+.|.+ +.|++.+.++++.+++. .++........
T Consensus 145 spDGk~lyVan~~~~~~VsV----ID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~- 219 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGV----VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV- 219 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEE----EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC-
T ss_pred cCCCCEEEEEEcCCCCeEEE----EECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce-
Confidence 99998 5666653 789999 999988887777654332233433 45556666777777763 24443221100
Q ss_pred ccCCCCCCceeEEEe-CCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC----cCCCCCCceeEEEcCCC-cE
Q psy13998 139 NKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN----KAGQLEHPHYIAVSNTN-RV 212 (319)
Q Consensus 139 ~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g-~~ 212 (319)
............++. ++|++++.. .+++++++|..+.... +...+..... ..........+++++++ ++
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~~~~vs-~~g~V~v~d~~~~~~~----v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l 294 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGRLVWPT-YTGKIHQIDLSSGDAK----FLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 294 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEEEB-TTSEEEEEECTTSSCE----ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred eccccccccccceeEcCCCcEEEEe-CCCEEEEEECCCCcce----eecceeccccccccccccCCCcceeeECCCCCeE
Confidence 000000111223554 688766644 3689999998754221 1111110000 00001122347778765 67
Q ss_pred EEEeC---------CCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc--EEEEeCCCCEEEEEc-CCCceE
Q psy13998 213 IVSDS---------NNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY--ISVGDSGNNRIQIFT-PDGQFL 279 (319)
Q Consensus 213 ~v~~~---------~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~--~~v~~~~~~~i~~~~-~~g~~~ 279 (319)
|++.. ..+.|.++|. +++.+.++. . ...+.+|++++|++ +|++...++.|.++| .+++.+
T Consensus 295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~------v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------M-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------E-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEeccccccccCCCCCEEEEEECCCCeEEEEEE------C-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 77643 1368999996 567777662 1 23578999999985 677788899999999 578999
Q ss_pred EeecccCCCCCCCCCcceEEEccC
Q psy13998 280 RAFGCWGSGDGEFKGLEGVAVMSN 303 (319)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~ 303 (319)
+++. ....|+.|.+++|
T Consensus 368 ~~i~-------~~~~p~~l~~s~d 384 (386)
T 3sjl_D 368 RSVN-------QLGHGPQVITTAD 384 (386)
T ss_dssp EEEC-------CCCSSCCEEEECC
T ss_pred EEec-------CCCCCceeEECCc
Confidence 8883 3456888888877
No 238
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.56 E-value=1.3e-12 Score=104.92 Aligned_cols=216 Identities=13% Similarity=0.118 Sum_probs=128.8
Q ss_pred EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC----CeEEEEeCCC-----C
Q psy13998 96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT----NRVIVSDSNN-----H 166 (319)
Q Consensus 96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----g~~~~~~~~~-----~ 166 (319)
.+..|.+|+++|+|++|++... ++|.+++ +++........ ........|.+|+++|+ +.+|++.... +
T Consensus 29 ~l~~P~~ia~~pdG~l~V~e~~-g~I~~i~-~g~~~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLIAERP-GRIRLFR-EGRLSTYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CCSCEEEEEECTTSCEEEEETT-TEEEEEE-TTEEEEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCCceEEEEcCCCeEEEEeCC-CeEEEEE-CCCccEeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3668999999999999999865 8999998 55532221111 11223467899999997 7889887643 6
Q ss_pred EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-------------CCeEEEEeCCCCEEE
Q psy13998 167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVNGRVIT 233 (319)
Q Consensus 167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-------------~~~i~~~~~~~~~~~ 233 (319)
.|..++.++..+.....++..+... ......+..|+++|+|.+|++... .+.|.+++++|....
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~---~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~ 182 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPAR---PHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP 182 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCC---TTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCC---CCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence 7888887643221111122222110 122345678999999999998642 268889988773210
Q ss_pred EeCC---CCCC----cccccCcceEEEcC-CCcEEEEeCCCCE--------EEEEcCCCceE---Ee-------ecccCC
Q psy13998 234 SFGS---EGSE----EGQLKFPRGVAVDD-QGYISVGDSGNNR--------IQIFTPDGQFL---RA-------FGCWGS 287 (319)
Q Consensus 234 ~~~~---~~~~----~~~~~~~~~i~~~~-~g~~~v~~~~~~~--------i~~~~~~g~~~---~~-------~~~~~~ 287 (319)
.-.- .+.. ...+..|.+++++| +|++|+++...+. |.+....+..- .. +..+..
T Consensus 183 ~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 183 GNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp TCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 0000 0000 11234689999999 7899999887665 55554322100 00 000000
Q ss_pred CCCCCCCcceEEEccCCcEEEEeCCCCeEEe
Q psy13998 288 GDGEFKGLEGVAVMSNGNILVCDRENHRIQV 318 (319)
Q Consensus 288 ~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v 318 (319)
.-.....|.++++ .+|.+|+++...++|..
T Consensus 263 ~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~ 292 (352)
T 2ism_A 263 FWPQGFPPGNLAF-FRGDLYVAGLRGQALLR 292 (352)
T ss_dssp ECTTCCCEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred ecCCCCCCcceEE-ECCEEEEEECCCCEEEE
Confidence 0012346788999 57899999988887754
No 239
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=2.4e-11 Score=98.25 Aligned_cols=236 Identities=12% Similarity=0.096 Sum_probs=128.8
Q ss_pred cCCCc-EEEEeC-CCC---eEEEeccccccccceeeEEec---CceeeEEcCCCc-EEEEcC---------CCCeEEEEc
Q psy13998 64 GPDNS-IVVADS-SNH---RVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS-IVVADS---------SNHRVQVFQ 125 (319)
Q Consensus 64 ~~~g~-~~~~~~-~~~---~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~-~~~~~~---------~~~~i~~~~ 125 (319)
.++++ +|+++. ... .|.+ +|..+.+....+. .| +++++|+|+ +|++.. .++.|.+||
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v----~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWV----LDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEE----EECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 35666 566654 333 7888 8887776665443 56 999999996 566653 356899999
Q ss_pred -CCCcEEEEecCCCc-cCCCCCCceeEEEeCCCeEEE-EeCC-CCEEEEEecCCceeeecCceeee-ecccCCcCCCCCC
Q psy13998 126 -SDGTFVGKFGSMGN-KAGQLEHPHYIAVSNTNRVIV-SDSN-NHRVQIFDVNGRVFQSDGTFVGK-FGSMGNKAGQLEH 200 (319)
Q Consensus 126 -~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~-~~~~-~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 200 (319)
.+.+.+..+...+. .......|..++++|+|+.++ +... ++.|.++| .+. +.+.. +...+........
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~------~~~~~~i~~~~~~~~~~~~ 176 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG------SSDDQLLSSPTCYHIHPGA 176 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC------CEEeEEcCCCceEEEEeCC
Confidence 46677766643311 011124678999999997555 4443 58899999 754 33333 2111000000000
Q ss_pred -ceeEEEcCCC--------------------------------------cEEEEeCCCCeEEEEeCCCCE---EEEeCCC
Q psy13998 201 -PHYIAVSNTN--------------------------------------RVIVSDSNNHRVQIFDVNGRV---ITSFGSE 238 (319)
Q Consensus 201 -~~~~~~~~~g--------------------------------------~~~v~~~~~~~i~~~~~~~~~---~~~~~~~ 238 (319)
-.-++..++| .++++. ..+.++++|..+.. +..+...
T Consensus 177 ~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~ 255 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred CceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeec
Confidence 0001111222 122222 23445555543221 1111000
Q ss_pred CC-CcccccCcce---EEEcCCC-cEEEEeC---------CCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccC
Q psy13998 239 GS-EEGQLKFPRG---VAVDDQG-YISVGDS---------GNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSN 303 (319)
Q Consensus 239 ~~-~~~~~~~~~~---i~~~~~g-~~~v~~~---------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (319)
.. .......|.+ +++++++ ++|++.. ..+.|.++|. +++.+..+. ....|++++++||
T Consensus 256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-------~g~~p~~i~~s~D 328 (373)
T 2mad_H 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-------LGHDVDAISVAQD 328 (373)
T ss_pred CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-------CCCCcCeEEECCC
Confidence 00 0001112333 7889986 5777654 2468999995 567777772 1236999999999
Q ss_pred Cc-EEEEeC-CCCeEEeC
Q psy13998 304 GN-ILVCDR-ENHRIQVF 319 (319)
Q Consensus 304 g~-~~v~~~-~~~~i~v~ 319 (319)
|+ ++++.. .++.|.+|
T Consensus 329 g~~~l~v~~~~~~~V~Vi 346 (373)
T 2mad_H 329 GGPDLYALSAGTEVLHIY 346 (373)
T ss_pred CCeEEEEEcCCCCeEEEE
Confidence 98 555544 67888764
No 240
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.56 E-value=8.8e-14 Score=122.86 Aligned_cols=238 Identities=8% Similarity=-0.005 Sum_probs=139.2
Q ss_pred CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec-------CceeeEEcCCCcEEEEcCC---------CCeE
Q psy13998 58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-------WPRGIAVGPDNSIVVADSS---------NHRV 121 (319)
Q Consensus 58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~g~~~~~~~~---------~~~i 121 (319)
..+++|+|+|+++++ +.++.|++ |+..++.....+. .+..++++|||+.++..+. ++.|
T Consensus 18 ~~~~~~s~dg~~~~~-~~d~~i~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 18 TFFPNWISGQEYLHQ-SADNNIVL----YNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp CCCCEESSSSEEEEE-CTTSCEEE----EESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CCccEECCCCeEEEE-cCCCCEEE----EEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence 347899999975555 46899999 8887766544332 2678999999987665543 5789
Q ss_pred EEEcCCCcEE---EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCc----
Q psy13998 122 QVFQSDGTFV---GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK---- 194 (319)
Q Consensus 122 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (319)
++||.++... ..+ ...+..++|+|||+.++... ++.|++|++.+.. ... +...+..
T Consensus 93 ~~~d~~~g~~~~~~~l---------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~------~~~-l~~~~~~~~v~ 155 (719)
T 1z68_A 93 YIYDLSNGEFVRGNEL---------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP------PFQ-ITFNGRENKIF 155 (719)
T ss_dssp EEEETTTTEECCSSCC---------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC------CEE-CCCCCBTTTEE
T ss_pred EEEECCCCccccceec---------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCC------cEE-EecCCCcCCeE
Confidence 9999655433 222 13467899999998777664 6799999987532 111 1000000
Q ss_pred CCC---------CCCceeEEEcCCCcEEEEeCCC----------------------------------CeEEEEeCCCCE
Q psy13998 195 AGQ---------LEHPHYIAVSNTNRVIVSDSNN----------------------------------HRVQIFDVNGRV 231 (319)
Q Consensus 195 ~~~---------~~~~~~~~~~~~g~~~v~~~~~----------------------------------~~i~~~~~~~~~ 231 (319)
.++ .....+++++|||+.++..+.+ ..|++||.++..
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 000 1222579999999877655422 167788865532
Q ss_pred E---EEeCCCCCCcccccCcceEEEcCCCcEEEEeC--CC--CEEEEEc----CCCceEEeecccCCCCCCCCCcc----
Q psy13998 232 I---TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS--GN--NRIQIFT----PDGQFLRAFGCWGSGDGEFKGLE---- 296 (319)
Q Consensus 232 ~---~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~--~~--~~i~~~~----~~g~~~~~~~~~~~~~~~~~~~~---- 296 (319)
. ..+........+...+..++|+||++++++.. .. ..|.+|+ ..+.....+.. .....+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~ 314 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE-HIEESRTGWAGGFFV 314 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE-EEEECSSSCSSSSSC
T ss_pred ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe-cccccCCceEccccC
Confidence 2 12211000012334567899999998777632 22 3588888 54332222210 00002222333
Q ss_pred -eEEEccCCc-E-EEEeCCCCeEEe
Q psy13998 297 -GVAVMSNGN-I-LVCDRENHRIQV 318 (319)
Q Consensus 297 -~l~~~~~g~-~-~v~~~~~~~i~v 318 (319)
.++|+|||+ + +++...++..++
T Consensus 315 ~~~~~spdg~~l~~~~~~~~g~~~l 339 (719)
T 1z68_A 315 STPVFSYDAISYYKIFSDKDGYKHI 339 (719)
T ss_dssp CCCEECTTSSCEEEEEECTTSCEEE
T ss_pred CccEECCCCCeEEEEEEccCCceEE
Confidence 789999998 3 334555554333
No 241
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=1.3e-11 Score=99.73 Aligned_cols=210 Identities=12% Similarity=0.059 Sum_probs=124.0
Q ss_pred CCCcceEEcCCCcEEE-EeCC-CCeEEEeccccccccceeeEE-ecCceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEE
Q psy13998 56 TWPRGIAVGPDNSIVV-ADSS-NHRVQVCFPHFDLKTNCVFLA-FTWPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFV 131 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~-~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~ 131 (319)
..|..++++|+|+.++ +... ++.|.+ +| .+.+.... +..+.++.+.+++ +.|++.+.++++..++.+++..
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~v----iD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~ 199 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGL----VV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA 199 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEE----EE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEE
Confidence 4578899999998544 4433 578999 88 87777777 7766666666665 5677777888888888755554
Q ss_pred EEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCC-cCCCCCCc---eeEEE
Q psy13998 132 GKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN-KAGQLEHP---HYIAV 206 (319)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~ 206 (319)
..........+.........+.++ +.+++.. ..+.+.++|..+... +.+..+..... .......| ..+++
T Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGA----TNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred EEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcc----eEeeeeeecCCcccccceecCceEeEEE
Confidence 332110000000000012334443 3444444 567888888864311 11111111000 00011123 33788
Q ss_pred cCCC-cEEEEeC---------CCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC-CCCEEEEEc
Q psy13998 207 SNTN-RVIVSDS---------NNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS-GNNRIQIFT 273 (319)
Q Consensus 207 ~~~g-~~~v~~~---------~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~-~~~~i~~~~ 273 (319)
++++ ++|++.. ..+.|.++|.. ++.+.++.. ...|.+++++|||+ ++++.. .++.|.++|
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------GHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 9886 5666543 24689999975 555566621 12589999999997 555544 689999999
Q ss_pred C-CCceEEee
Q psy13998 274 P-DGQFLRAF 282 (319)
Q Consensus 274 ~-~g~~~~~~ 282 (319)
. +++.++.+
T Consensus 348 ~~t~~vv~~i 357 (373)
T 2mad_H 348 AGAGDQDQST 357 (373)
T ss_pred CCCCCEEeee
Confidence 4 67777774
No 242
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=99.54 E-value=1.7e-12 Score=100.33 Aligned_cols=215 Identities=13% Similarity=0.097 Sum_probs=133.8
Q ss_pred CceeeEEcC-CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCcc--CCCCCCceeEEE---eCCCeEEEEeC---------
Q psy13998 99 WPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNK--AGQLEHPHYIAV---SNTNRVIVSDS--------- 163 (319)
Q Consensus 99 ~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~---~~~g~~~~~~~--------- 163 (319)
.|.++.|++ ++.+|++.-..++|..|++++.....+..++.. ......+.+|.+ +++++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 678899986 567899988999999999774332233222110 011235689999 68899988522
Q ss_pred ----CCCEEEEEecCCceeeecCceeeeecccCCcCC-------CCCCceeEEEcCCCcEEEEeCCC-CeEEEEeCCCCE
Q psy13998 164 ----NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG-------QLEHPHYIAVSNTNRVIVSDSNN-HRVQIFDVNGRV 231 (319)
Q Consensus 164 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~v~~~~~-~~i~~~~~~~~~ 231 (319)
.+..+..||+.+. ..++.+........... ....+..++++++|+.||+++.. +.|++++++|+.
T Consensus 94 ~~~~g~~~v~~~Dl~~~---~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLS---ENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp CCSSSCCEEEEEESSCC---TTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred cccCCCCEEEEEcCCcC---CCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 2578999998710 00122222211100001 22357899999999999999988 999999999985
Q ss_pred EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEE-eeccc--CCCCCCCCCcceE-EEccCCcE-
Q psy13998 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR-AFGCW--GSGDGEFKGLEGV-AVMSNGNI- 306 (319)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~-~~~~~--~~~~~~~~~~~~l-~~~~~g~~- 306 (319)
+..+............+++|+++|+|+++++....++|..||... ... .+... +.. +....+.+| ....+|++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~-pv~~~v~~~~~G~~-~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK-PYAWPEPVKINGDF-GTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS-SSCCCEECEESSCC-CCCTTEEEEEEEEETTEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC-CcceeecccccCCc-ccccCcccccccccCCEEE
Confidence 544321111112234578999999997666655599999999652 221 12111 111 244567775 55568885
Q ss_pred EEEeCCCCeEEe
Q psy13998 307 LVCDRENHRIQV 318 (319)
Q Consensus 307 ~v~~~~~~~i~v 318 (319)
+|++..++.+.+
T Consensus 249 lV~~~~~~~~~l 260 (334)
T 2p9w_A 249 LVGARAPYAISF 260 (334)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEcCCCCEEEE
Confidence 787766665543
No 243
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.53 E-value=2.5e-12 Score=112.53 Aligned_cols=248 Identities=12% Similarity=0.043 Sum_probs=143.7
Q ss_pred cCCCCcceEEcCCCcEEEEe--CCCCeEEEeccccccccceeeEEec----Cce---------eeEEc--CCCcE--EEE
Q psy13998 54 CFTWPRGIAVGPDNSIVVAD--SSNHRVQVCFPHFDLKTNCVFLAFT----WPR---------GIAVG--PDNSI--VVA 114 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~----~~~---------~l~~~--~~g~~--~~~ 114 (319)
|-..+..+++++++-+|+.. ..++...+ |.....+....+. ... ...++ |||+. +++
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATL----VRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEE----EEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEE----EEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 34577889999876677777 55778888 5543233333221 112 34344 88864 555
Q ss_pred cCCCCeEEEEcCC--C-cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC----------CEEEEEecCCceeeec
Q psy13998 115 DSSNHRVQVFQSD--G-TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN----------HRVQIFDVNGRVFQSD 181 (319)
Q Consensus 115 ~~~~~~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~----------~~i~~~~~~~~~~~~~ 181 (319)
...+..|++++.+ + .....+..... ..+...+.+++|+|||+.++..+.+ ..|++|++++......
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSA-VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCC-STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCcc-CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 5556789999866 3 33333321100 0023456789999999877665544 5788999875100000
Q ss_pred CceeeeecccCCcC-CCCCCceeEEEcCCCcEEEEeCCC--------CeEEEEeCCC-C---EEEEeCCCCCCcccccCc
Q psy13998 182 GTFVGKFGSMGNKA-GQLEHPHYIAVSNTNRVIVSDSNN--------HRVQIFDVNG-R---VITSFGSEGSEEGQLKFP 248 (319)
Q Consensus 182 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~v~~~~~--------~~i~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 248 (319)
++. ..+ . ........++++|+|+.++....+ ..|++|+.++ . ....+. ..+...+
T Consensus 177 ~~~-~~l------~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~ 244 (662)
T 3azo_A 177 SAV-REL------SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-----GGPEEAI 244 (662)
T ss_dssp GGS-EES------SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-----EETTBCE
T ss_pred Cce-eEE------EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-----CCCCceE
Confidence 111 111 1 112344568899999766543322 4799999762 2 333331 1223457
Q ss_pred ceEEEcCCCcEEEEeCCCC--EEEEEcC-CCceEEeecccCCCC-CCC-CCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 249 RGVAVDDQGYISVGDSGNN--RIQIFTP-DGQFLRAFGCWGSGD-GEF-KGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 249 ~~i~~~~~g~~~v~~~~~~--~i~~~~~-~g~~~~~~~~~~~~~-~~~-~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
..++|+|||+++++...++ .|++|+. +++............ ... ..+..++++++++++++... +.+++|
T Consensus 245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 319 (662)
T 3azo_A 245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG 319 (662)
T ss_dssp EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred cceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence 7899999999888887777 7888886 444433221100000 000 01467899999998888877 777765
No 244
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=99.52 E-value=1.5e-11 Score=97.01 Aligned_cols=238 Identities=16% Similarity=0.198 Sum_probs=144.4
Q ss_pred cCCCCcceEEcCCCcEEEEeCCCCeEEEecccccccccee--eEE--------ecCceeeEEcCC----CcEEEEc--CC
Q psy13998 54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--FLA--------FTWPRGIAVGPD----NSIVVAD--SS 117 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~--------~~~~~~l~~~~~----g~~~~~~--~~ 117 (319)
.+..|++|++.|+|++|++....++|++ ++...... +.. ...+.+|+++|+ +.+|++- ..
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~----v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITR----VDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEE----ECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEE----EECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 4789999999999999999987899999 65432221 211 235789999985 6787753 34
Q ss_pred CCeEEEEcCCC---------cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-------------CCCEEEEEecCC
Q psy13998 118 NHRVQVFQSDG---------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-------------NNHRVQIFDVNG 175 (319)
Q Consensus 118 ~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-------------~~~~i~~~~~~~ 175 (319)
.++|..|..++ +....+.... ....+....|+|.++|.+|++.+ ..++|..++.++
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p--~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIP--KGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEEC--CCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCC--CCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 56888887433 1111111000 12234567899999999999854 246777777776
Q ss_pred ceeeecCcee--eeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC---eEEEEeCCCCE--EEEeCC---CCCC----
Q psy13998 176 RVFQSDGTFV--GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH---RVQIFDVNGRV--ITSFGS---EGSE---- 241 (319)
Q Consensus 176 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~---~i~~~~~~~~~--~~~~~~---~~~~---- 241 (319)
..... ..+. ..+ ...+..|.+++++++|.+|+++.... .|.+....+.. ....+. ....
T Consensus 184 ~ip~~-nPf~~~~i~------a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~ 256 (347)
T 3das_A 184 EPAPG-NPFPGSPVY------SYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA 256 (347)
T ss_dssp SBCTT-CSSTTCCEE------EBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred CccCC-CCCCCCeEE------eeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence 42110 0000 001 12346789999999999999987542 34433221110 000000 0000
Q ss_pred --cccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCce-----EEeecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998 242 --EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQF-----LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDR 311 (319)
Q Consensus 242 --~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~ 311 (319)
......|.+++|. +|.+|++.....+|..+..++.. ...+ .+...+|.+|++.|||.+|++..
T Consensus 257 ~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l------~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 257 QWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFL------EGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEES------TTTSSCEEEEEEEETTEEEEEEC
T ss_pred ecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEee------cCCCCCccEEEECCCCcEEEEEc
Confidence 0011357789987 57899998888888888743321 1112 23456899999999999888754
No 245
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=99.52 E-value=7e-12 Score=100.51 Aligned_cols=208 Identities=14% Similarity=0.162 Sum_probs=129.7
Q ss_pred EecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEeCC----CeEEEEeCC---C--
Q psy13998 96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVSNT----NRVIVSDSN---N-- 165 (319)
Q Consensus 96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~----g~~~~~~~~---~-- 165 (319)
.+..|.+|+++|+|++|++... ++|++++.+|+ .+..+. ........+.+|+++|+ +.+|++... +
T Consensus 27 ~l~~P~~ia~~pdG~l~V~e~~-g~I~~~d~~G~~~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLVTERP-GRLVLISPSGKKLVASFD---VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp SCSCEEEEEEEETTEEEEEETT-TEEEEECSSCEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCCCeEEEEcCCCeEEEEeCC-CEEEEEeCCCceEeeccc---eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 3568999999999999999865 89999987776 222211 11122357899999996 788888753 3
Q ss_pred --CEEEEEecCCc--eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-------------CCeEEEEeCC
Q psy13998 166 --HRVQIFDVNGR--VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDVN 228 (319)
Q Consensus 166 --~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-------------~~~i~~~~~~ 228 (319)
+.|..|+.++. .......++..+. ......+..|+++|+|.+|++... .+.|.+++++
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~-----~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d 177 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIP-----GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE 177 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEE-----CCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCC-----CCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence 67888887653 1110001111121 112235678999999999998642 3689999887
Q ss_pred CCE--------EEEeCCCCCCcccccCcceEEEcC-CCcEEEEeCCCC---EEEEEcCCCceE---Ee-------ecccC
Q psy13998 229 GRV--------ITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDSGNN---RIQIFTPDGQFL---RA-------FGCWG 286 (319)
Q Consensus 229 ~~~--------~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~~~~---~i~~~~~~g~~~---~~-------~~~~~ 286 (319)
|.. ...+ ...+..|.++++++ +|++|+++...+ .|.+....+..- .. +..+.
T Consensus 178 G~~p~~npf~~~~i~------a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 251 (354)
T 3a9g_A 178 GRPPADNPFPNSPIW------SYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPV 251 (354)
T ss_dssp SCCCTTSSSTTCCEE------EECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCCCCCCCcEE------EEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCE
Confidence 751 0111 11245789999999 789999998754 355554322100 00 00000
Q ss_pred C-CCCCCCCcceEEE-------ccCCcEEEEeCCCCeEEe
Q psy13998 287 S-GDGEFKGLEGVAV-------MSNGNILVCDRENHRIQV 318 (319)
Q Consensus 287 ~-~~~~~~~~~~l~~-------~~~g~~~v~~~~~~~i~v 318 (319)
. .......|.++++ ..+|++|+++...++|..
T Consensus 252 ~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~ 291 (354)
T 3a9g_A 252 IDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAA 291 (354)
T ss_dssp EECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEE
T ss_pred eecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEE
Confidence 0 0012346889999 357899999988877754
No 246
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.51 E-value=2.6e-12 Score=113.69 Aligned_cols=207 Identities=7% Similarity=0.006 Sum_probs=120.7
Q ss_pred CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec---------CceeeEEcCCCcEEEEcCCC---------C
Q psy13998 58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT---------WPRGIAVGPDNSIVVADSSN---------H 119 (319)
Q Consensus 58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~g~~~~~~~~~---------~ 119 (319)
..++.|+|+|++++++ ++.|++ |+..++.....+. ...+++++|||+.++..+.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILV----FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEE----EETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEE----EECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4689999999988886 899999 8887766544322 11337889999876665543 5
Q ss_pred eEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee---ecCceeeeecccCC---
Q psy13998 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ---SDGTFVGKFGSMGN--- 193 (319)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~--- 193 (319)
.+++||..+.....+ ..+.......+|+|||+.++.. .++.|++|+..+.... .++.....+.....
T Consensus 93 ~~~~~d~~~~~~~~l------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 93 SYDIYDLNKRQLITE------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp EEEEEETTTTEECCS------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EEEEEECCCCcEEEc------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 677999655544443 2223456889999999876665 4678999998753211 11110000000000
Q ss_pred cCCCCCCceeEEEcCCCcEEEEeCC------------------------------------CCeEEEEeCCC---C---E
Q psy13998 194 KAGQLEHPHYIAVSNTNRVIVSDSN------------------------------------NHRVQIFDVNG---R---V 231 (319)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~~v~~~~------------------------------------~~~i~~~~~~~---~---~ 231 (319)
.+..+....+++++|||+.++.... ...|++||.++ . .
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 0000123346889999976554321 01577788655 3 3
Q ss_pred EEEeCCCCCCcccccCcceEEEcCCCcEEEEeC----CCCEEEEEcC-CCc
Q psy13998 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS----GNNRIQIFTP-DGQ 277 (319)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~----~~~~i~~~~~-~g~ 277 (319)
...+.......++...+..++|+|||++++... .+..|.+||. .|+
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 333321100001334567899999998555432 2347899994 444
No 247
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.51 E-value=1.3e-11 Score=100.47 Aligned_cols=210 Identities=14% Similarity=0.117 Sum_probs=122.1
Q ss_pred CCCcceEEcCCCc-EEEEeCC-CCeEEEeccccccccceeeEEecCceeeEEcCCC-cEEEEcCCCCeEEEEc-CCCcEE
Q psy13998 56 TWPRGIAVGPDNS-IVVADSS-NHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN-SIVVADSSNHRVQVFQ-SDGTFV 131 (319)
Q Consensus 56 ~~~~~v~~~~~g~-~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~i~~~~-~~~~~~ 131 (319)
..|.+++++|||+ +|++... ++.|.+ +|..+.+....+.-+.+..+.|++ ..|++.+.++++...+ .+++..
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsV----ID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~ 252 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGV----VDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETK 252 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEE----EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEE----EECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEE
Confidence 3588999999987 4555543 678989 888887777766654433344433 4556555666666666 344433
Q ss_pred EEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCCCEEEEEecCCceeeecCceeeeecccC-CcCCCCCCce---eEEE
Q psy13998 132 GKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-NKAGQLEHPH---YIAV 206 (319)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~ 206 (319)
.... .............+.+.+++. +|+. ...+.+.++|..+..... +..+.... ........|. .+++
T Consensus 253 ~~~~-~~~~v~~~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~v----~~~~~~~~~~~i~~g~~p~g~~~va~ 326 (426)
T 3c75_H 253 VTNT-EVFHTEDELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGATF----RAPIEALTEAERADDWRPGGWQQTAY 326 (426)
T ss_dssp EEEC-CCCSCTTSCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEEE----CCCEESSCTTTGGGTEEECSSSCEEE
T ss_pred EEee-eeeccCCCceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceEE----eeeeeeccccccccccccCCceeeEE
Confidence 2211 000000000112345677664 4444 456789988886532211 11111000 0000001122 3789
Q ss_pred cCCC-cEEEEeC---------CCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc--EEEEeCCCCEEEEEc
Q psy13998 207 SNTN-RVIVSDS---------NNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY--ISVGDSGNNRIQIFT 273 (319)
Q Consensus 207 ~~~g-~~~v~~~---------~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~--~~v~~~~~~~i~~~~ 273 (319)
++++ ++|++.. ..+.|.++|. +.+.+.++. . ...|.+|+++|||+ +|++...++.|.++|
T Consensus 327 s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~------v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 327 HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE------L-GHEIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------E-EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE------C-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 9886 6777753 2457999996 566777662 1 12589999999987 566666799999999
Q ss_pred -CCCceEEee
Q psy13998 274 -PDGQFLRAF 282 (319)
Q Consensus 274 -~~g~~~~~~ 282 (319)
.+++.++.+
T Consensus 400 ~~t~kvv~tI 409 (426)
T 3c75_H 400 AATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 578888876
No 248
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.51 E-value=2e-12 Score=113.13 Aligned_cols=235 Identities=14% Similarity=0.067 Sum_probs=134.5
Q ss_pred ceEEc--CCCcE-EE-EeCCCCeEEEeccccccc--cceeeEEe---------cCceeeEEcCCCcEEEEcCCC------
Q psy13998 60 GIAVG--PDNSI-VV-ADSSNHRVQVCFPHFDLK--TNCVFLAF---------TWPRGIAVGPDNSIVVADSSN------ 118 (319)
Q Consensus 60 ~v~~~--~~g~~-~~-~~~~~~~v~~~~~~~~~~--~~~~~~~~---------~~~~~l~~~~~g~~~~~~~~~------ 118 (319)
...++ |||+. ++ +...+..|.+ ++.. +.+....+ ..+.+++|+|||+.++..+.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~----~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 156 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYA----FEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGP 156 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEE----ECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSST
T ss_pred cceeeeecCCCeEEEEEECCCCeEEE----EcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCC
Confidence 44454 88886 44 4344667777 6654 10222222 235678999999866655443
Q ss_pred ----CeEEEEcCCC------cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC--------CEEEEEecCC-ceee
Q psy13998 119 ----HRVQVFQSDG------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--------HRVQIFDVNG-RVFQ 179 (319)
Q Consensus 119 ----~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~--------~~i~~~~~~~-~~~~ 179 (319)
..|++|+.++ .....+.. .+...+..++++|||+.++..+.+ ..|.+|++++ ....
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 157 SDVRRFLAAVPLDGSAAADRSAVRELSD-----DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp TCEEEEEEEEETTSTTTTCGGGSEESSC-----SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred CCceeEEEEEECCCCccccCCceeEEEe-----cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 5799999665 33333320 122355678999999866544322 4799999873 2000
Q ss_pred ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC--eEEEEeCCCCEEEEeCCCCCCcccc---cCcceEEEc
Q psy13998 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH--RVQIFDVNGRVITSFGSEGSEEGQL---KFPRGVAVD 254 (319)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~ 254 (319)
+. ..+. ..+...+..++++|+|+++++...++ .|++|+.++.....+.......... ..+..++++
T Consensus 232 ---~~-~~l~-----~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~ 302 (662)
T 3azo_A 232 ---DT-RTLL-----GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL 302 (662)
T ss_dssp ---EE-EEEE-----EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC
T ss_pred ---cc-EEeC-----CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEe
Confidence 11 1110 11123467789999999888877777 7888887443344432111100000 014578999
Q ss_pred CCCcEEEEeCCCCEEEEE--cCCCceEEeecccCCCCCCCCCcceE-EEccCCcEEEEeCCCCeEEeC
Q psy13998 255 DQGYISVGDSGNNRIQIF--TPDGQFLRAFGCWGSGDGEFKGLEGV-AVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 255 ~~g~~~v~~~~~~~i~~~--~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~~g~~~v~~~~~~~i~v~ 319 (319)
++++++++... +.+.+| +.++..++.+ ..+...+..+ +++++..++++.+.+....+|
T Consensus 303 ~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 303 ANGLIAVVHGK-GAAVLGILDPESGELVDA------AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp TTSCEEEEEBS-SSCEEEEEETTTTEEEEC------CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEc-CccEEEEEECCCCcEEEe------cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 99998888877 766666 6665556666 3334445555 554443355555555444443
No 249
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=99.49 E-value=6e-12 Score=100.99 Aligned_cols=254 Identities=12% Similarity=0.174 Sum_probs=146.9
Q ss_pred CCCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccce--eeEE--------ecCceeeEEcCC----CcEEEEcCC--
Q psy13998 55 FTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNC--VFLA--------FTWPRGIAVGPD----NSIVVADSS-- 117 (319)
Q Consensus 55 ~~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~--~~~~--------~~~~~~l~~~~~----g~~~~~~~~-- 117 (319)
+..|++|++.|+|+ +|++.. .++|++ ++..... .+.. ...+.+|+++|+ +.+|++...
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~-~G~i~~----~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~ 91 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLR-GGELRH----WQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG 91 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEET-TTEEEE----EETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred CCCcEEEEEcCCCCEEEEEeC-CceEEE----EeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence 67899999999999 999886 589998 5432111 0111 125689999994 778888543
Q ss_pred -----CCeEEEEcCCC---cE--EEE-ecCCCccCCCCCCceeEEEeCCCeEEEEeCC-------------CCEEEEEec
Q psy13998 118 -----NHRVQVFQSDG---TF--VGK-FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDV 173 (319)
Q Consensus 118 -----~~~i~~~~~~~---~~--~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-------------~~~i~~~~~ 173 (319)
..+|..++.++ .. ... +..........+.+..|++.|+|.+|++.+. .++|..++.
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 34687776322 11 111 1111100122345688999999999999654 357888888
Q ss_pred CCceeeecCceeeeec-ccCCcCCCCCCceeEEEcC-CCcEEEEeCCCC---eEEEEeCCCCE---EEE---------eC
Q psy13998 174 NGRVFQSDGTFVGKFG-SMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNH---RVQIFDVNGRV---ITS---------FG 236 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~---~i~~~~~~~~~---~~~---------~~ 236 (319)
++.....+ .+...-. ...........|.++++++ +|++|+++.... .|.+....+.. ... +.
T Consensus 172 dG~~p~~n-pf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 172 QGEIPDDN-PFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp TSCCCTTC-TTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCC-CCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 76421100 0000000 0000011245789999999 789999887532 34333221110 000 00
Q ss_pred ------CCCCCc-----ccccCcceEEEcC-------CCcEEEEeCCCCEEEEEcCCC-ceEEeecccCCCCCCCCCcce
Q psy13998 237 ------SEGSEE-----GQLKFPRGVAVDD-------QGYISVGDSGNNRIQIFTPDG-QFLRAFGCWGSGDGEFKGLEG 297 (319)
Q Consensus 237 ------~~~~~~-----~~~~~~~~i~~~~-------~g~~~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 297 (319)
...... .+...|.++++.. +|.+|++....++|..++.++ +........ ......|.+
T Consensus 251 ~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~rp~~ 327 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL---TDRGQRIRD 327 (353)
T ss_dssp TCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES---GGGCCCEEE
T ss_pred cccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc---cCCCCceeE
Confidence 000000 1123577888863 578999999999999998543 333221100 122457999
Q ss_pred EEEccCCcEEEE-eCCCCeEE
Q psy13998 298 VAVMSNGNILVC-DRENHRIQ 317 (319)
Q Consensus 298 l~~~~~g~~~v~-~~~~~~i~ 317 (319)
++++|||.+|++ +..+++|.
T Consensus 328 v~~~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 328 VRTGPDGYLYVLTDESSGELL 348 (353)
T ss_dssp EEECTTSCEEEEECSTTEEEE
T ss_pred EEECCCCcEEEEEeCCCCEEE
Confidence 999999999886 55667654
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.49 E-value=2.6e-11 Score=90.83 Aligned_cols=187 Identities=12% Similarity=0.093 Sum_probs=127.5
Q ss_pred eeeEEcCCCcEEEEcCCCC--eEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCce
Q psy13998 101 RGIAVGPDNSIVVADSSNH--RVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 177 (319)
Q Consensus 101 ~~l~~~~~g~~~~~~~~~~--~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~ 177 (319)
.++.++ ++.+|++.+..+ .|.++| .+|+.+..+.... .....++++. .+++|++...++.+.+||..+.
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-----~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~- 117 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-----RYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNL- 117 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-----TCCEEEEEEE-TTEEEEEESSSSEEEEEETTTC-
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-----ccceeEEEEe-CCEEEEEEeeCCEEEEEECccC-
Confidence 889998 678999887654 899999 6788888775321 1223456665 4689999999999999999853
Q ss_pred eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCC
Q psy13998 178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQ 256 (319)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 256 (319)
+.+.++... ....+++.+ .+.+|+++. ++.|+++|+. .+.+..+..... ......++.+.+. +
T Consensus 118 -----~~~~ti~~~-------~eG~glt~d-g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~-g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 118 -----RQVRSFNYD-------GEGWGLTHN-DQYLIMSDG-TPVLRFLDPESLTPVRTITVTAH-GEELPELNELEWV-D 181 (262)
T ss_dssp -----CEEEEEECS-------SCCCCEEEC-SSCEEECCS-SSEEEEECTTTCSEEEEEECEET-TEECCCEEEEEEE-T
T ss_pred -----cEEEEEECC-------CCceEEecC-CCEEEEECC-CCeEEEEcCCCCeEEEEEEeccC-CccccccceeEEE-C
Confidence 555555321 123445543 246777764 7899999975 566666532110 1122344557775 7
Q ss_pred CcEEEEeCCCCEEEEEcC-CCceEEeecccCCC------CCCCCCcceEEEccCCc-EEEEeC
Q psy13998 257 GYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSG------DGEFKGLEGVAVMSNGN-ILVCDR 311 (319)
Q Consensus 257 g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~------~~~~~~~~~l~~~~~g~-~~v~~~ 311 (319)
|++|+....++.|.++|+ +|+.+..+...+.. .....-+++||++|+++ +|+++-
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 899999999999999995 78888877542211 12234689999999865 888774
No 251
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.48 E-value=1.3e-10 Score=92.58 Aligned_cols=213 Identities=14% Similarity=0.154 Sum_probs=141.8
Q ss_pred eEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEEecC
Q psy13998 61 IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGS 136 (319)
Q Consensus 61 v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 136 (319)
..+. ++.+|+. +.++.+.. ++.. +....... ....+..++++.+|+.. .++.+..++.+|+....+..
T Consensus 103 ~~~~-~~~l~v~-t~~~~l~~----~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt-~~~~l~~~d~~g~~~~~~~~ 174 (330)
T 3hxj_A 103 FTIF-EDILYVT-SMDGHLYA----INTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGS-NDNYLYAINPDGTEKWRFKT 174 (330)
T ss_dssp EEEE-TTEEEEE-CTTSEEEE----ECTT-SCEEEEEECSSCCCSCCEECTTSCEEEEC-TTSEEEEECTTSCEEEEEEC
T ss_pred ceEE-CCEEEEE-ecCCEEEE----EcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEc-CCCEEEEECCCCCEeEEEec
Confidence 3444 6666664 55678888 7765 33332222 23566777788888764 56789999977877766642
Q ss_pred CCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe
Q psy13998 137 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 216 (319)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~ 216 (319)
. ...+..+.+++++.+|+.. +.+..++..+ +....... ....+.+++++++|.+|++.
T Consensus 175 ~------~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g-------~~~~~~~~------~~~~~~~~~~~~~g~l~v~t 232 (330)
T 3hxj_A 175 N------DAITSAASIGKDGTIYFGS---DKVYAINPDG-------TEKWNFYA------GYWTVTRPAISEDGTIYVTS 232 (330)
T ss_dssp S------SCCCSCCEECTTCCEEEES---SSEEEECTTS-------CEEEEECC------SSCCCSCCEECTTSCEEEEE
T ss_pred C------CCceeeeEEcCCCEEEEEe---CEEEEECCCC-------cEEEEEcc------CCcceeceEECCCCeEEEEc
Confidence 2 2345667788889988876 7788888544 33332211 11345678888888888876
Q ss_pred CCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcc
Q psy13998 217 SNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLE 296 (319)
Q Consensus 217 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (319)
. ++.++.++.++..+..+.. ....+..+.++++|++|++. .++.|+.++++|+.+..+. .....+.
T Consensus 233 ~-~~gl~~~~~~g~~~~~~~~------~~~~~~~~~~~~~g~l~v~t-~~ggl~~~d~~g~~~~~~~------~~~~~~~ 298 (330)
T 3hxj_A 233 L-DGHLYAINPDGTEKWRFKT------GKRIESSPVIGNTDTIYFGS-YDGHLYAINPDGTEKWNFE------TGSWIIA 298 (330)
T ss_dssp T-TTEEEEECTTSCEEEEEEC------SSCCCSCCEECTTSCEEEEC-TTCEEEEECTTSCEEEEEE------CSSCCCS
T ss_pred C-CCeEEEECCCCCEeEEeeC------CCCccccceEcCCCeEEEec-CCCCEEEECCCCcEEEEEE------cCCcccc
Confidence 5 5688888988887766632 11224456778788888775 4678999999888877663 2334577
Q ss_pred eEEEccCCcEEEEeCCCCeEEe
Q psy13998 297 GVAVMSNGNILVCDRENHRIQV 318 (319)
Q Consensus 297 ~l~~~~~g~~~v~~~~~~~i~v 318 (319)
++..+++|++|+.. .+|.+++
T Consensus 299 ~~~~d~~g~l~~gt-~~G~~~~ 319 (330)
T 3hxj_A 299 TPVIDENGTIYFGT-RNGKFYA 319 (330)
T ss_dssp CCEECTTCCEEEEC-TTSCEEE
T ss_pred ceEEcCCCEEEEEc-CCCeEEE
Confidence 88888999988854 5566654
No 252
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.48 E-value=3.9e-12 Score=103.88 Aligned_cols=221 Identities=9% Similarity=-0.001 Sum_probs=124.3
Q ss_pred CcceEEcCCCcEEEEeCC-CC--eEEEeccccccccceeeEEecC----ceeeEEcCCCcEEEEcCCCCeEEEEcC-CCc
Q psy13998 58 PRGIAVGPDNSIVVADSS-NH--RVQVCFPHFDLKTNCVFLAFTW----PRGIAVGPDNSIVVADSSNHRVQVFQS-DGT 129 (319)
Q Consensus 58 ~~~v~~~~~g~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~ 129 (319)
....+|+|||+.++..+. ++ .|.+ |+..+......... ..+++++|+|+.++....+..|++||. .++
T Consensus 38 ~~~~~~SpDg~~l~~~~~~~g~~~l~~----~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 38 FYQKCFTRDGSKLLFGGAFDGPWNYYL----LDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEE----EETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred hcCccCCCCCCEEEEEEcCCCCceEEE----EeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 344789999996655554 55 4777 77766554432221 236789999987766666789999994 455
Q ss_pred EEEEecCCCccCCCCCCce--eEEEeCCCeEEEEe----------------------CCCCEEEEEecCCceeeecCcee
Q psy13998 130 FVGKFGSMGNKAGQLEHPH--YIAVSNTNRVIVSD----------------------SNNHRVQIFDVNGRVFQSDGTFV 185 (319)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~--~l~~~~~g~~~~~~----------------------~~~~~i~~~~~~~~~~~~~~~~~ 185 (319)
....+... ..... ...+++++++++.. ..+..|.+||+.+. +..
T Consensus 114 ~~~~~~~~------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g------~~~ 181 (388)
T 3pe7_A 114 ENVVYQVP------AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG------EST 181 (388)
T ss_dssp EEEEEECC------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC------CEE
T ss_pred ceeeeech------hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC------ceE
Confidence 44333211 11111 22347888776631 23467888888753 211
Q ss_pred eeecccCCcCCCCCCceeEEEcC-CCcEEEE-eCC-----CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc
Q psy13998 186 GKFGSMGNKAGQLEHPHYIAVSN-TNRVIVS-DSN-----NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY 258 (319)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~-~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 258 (319)
... ........++++| +|+.++. ... ...|++++.++.....+... .....+...+|+|||+
T Consensus 182 ~l~-------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 182 VIL-------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH----AEGESCTHEFWVPDGS 250 (388)
T ss_dssp EEE-------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC----CTTEEEEEEEECTTSS
T ss_pred Eee-------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC----CCCcccccceECCCCC
Confidence 111 1122356789999 8865443 322 34899999877655555211 0002345678999997
Q ss_pred -EEEEeC-CC---CEEEEEcCCCceEEeecccCCCCC--C-CCCcceEEEccCCcEEE
Q psy13998 259 -ISVGDS-GN---NRIQIFTPDGQFLRAFGCWGSGDG--E-FKGLEGVAVMSNGNILV 308 (319)
Q Consensus 259 -~~v~~~-~~---~~i~~~~~~g~~~~~~~~~~~~~~--~-~~~~~~l~~~~~g~~~v 308 (319)
++++.. .. ..|++||..+...+.+... .. + ...+.+++|+|||+.++
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~~~~~~~~~~~~~spdg~~l~ 305 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSM---PACSHLMSNYDGSLMVGDGSDAP 305 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEE---CCEEEEEECTTSSEEEEEECCC-
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcC---CCceeeeecCCCCeEccCCCcce
Confidence 433332 22 2499999654332222110 11 0 01244567899987444
No 253
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.47 E-value=4.1e-12 Score=103.96 Aligned_cols=266 Identities=10% Similarity=-0.056 Sum_probs=140.6
Q ss_pred ccccCCCccchhcccccee---eeecccCCCCC--------cCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce
Q psy13998 24 IGQVGTTPRSQYLQKRRLQ---FKIGSRGSEPG--------CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC 92 (319)
Q Consensus 24 i~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~--------~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (319)
+..+++||++.+++..... ..+..++...+ +......+.|+|+|+.++..+.++.|++ |+..+..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~----~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMK----VDLETLE 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEE----EETTTCC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEE----EECCCCC
Confidence 6778899999886543211 11111111111 1122234889999998877777778999 8776554
Q ss_pred eeEEecCce----e-------------------eEEcCCCcEEEEc-----CCCCeEEEEcC-CCcEEEEecCCCccCCC
Q psy13998 93 VFLAFTWPR----G-------------------IAVGPDNSIVVAD-----SSNHRVQVFQS-DGTFVGKFGSMGNKAGQ 143 (319)
Q Consensus 93 ~~~~~~~~~----~-------------------l~~~~~g~~~~~~-----~~~~~i~~~~~-~~~~~~~~~~~~~~~~~ 143 (319)
.......+. . +.++|+++.++.. ..+..|++||. .++...... +
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-------~ 186 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-------D 186 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-------E
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-------C
Confidence 332221111 1 2345555432221 34568999995 444433321 2
Q ss_pred CCCceeEEEeC-CCe-EEEEeCC-C----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcE-EEE
Q psy13998 144 LEHPHYIAVSN-TNR-VIVSDSN-N----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV-IVS 215 (319)
Q Consensus 144 ~~~~~~l~~~~-~g~-~~~~~~~-~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~v~ 215 (319)
...+..++++| +++ ++++... . ..|.+++.++.. ...+.. ......+..++++|+|+. +++
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~~l~~----~~~~~~~~~~~~spdg~~l~~~ 255 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------VRKIKE----HAEGESCTHEFWIPDGSAMAYV 255 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------CEESSC----CCTTEEEEEEEECTTSSCEEEE
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------eeEeec----cCCCccccceEECCCCCEEEEE
Confidence 23457889999 676 4443322 2 468888876531 111100 000123566899999974 443
Q ss_pred eC--CC--CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcC-CCcEEEEeC----------------CCCEEEEEcC
Q psy13998 216 DS--NN--HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD-QGYISVGDS----------------GNNRIQIFTP 274 (319)
Q Consensus 216 ~~--~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~~~v~~~----------------~~~~i~~~~~ 274 (319)
.. .. +.|++||..+.....+... .. .. +.++| +|++++... .+..|++|+.
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 256 SYFKGQTDRVIYKANPETLENEEVMVM---PP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEETTTCCEEEEEECTTTCCEEEEEEC---CS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred ecCCCCccceEEEEECCCCCeEEeeeC---CC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 22 22 3499999754333332110 11 12 78899 998777643 3478999996
Q ss_pred CCceEEeecccCCCC-----CCCCCcceEEEccCCc-EEEEeCCCCeEEeC
Q psy13998 275 DGQFLRAFGCWGSGD-----GEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319 (319)
Q Consensus 275 ~g~~~~~~~~~~~~~-----~~~~~~~~l~~~~~g~-~~v~~~~~~~i~v~ 319 (319)
.+..+..+....... .....+..++|+|||+ ++++...++...+|
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 543333332100000 0001255678999997 44555555555554
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.45 E-value=3.1e-11 Score=90.36 Aligned_cols=186 Identities=9% Similarity=0.054 Sum_probs=128.1
Q ss_pred eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceee
Q psy13998 101 RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQ 179 (319)
Q Consensus 101 ~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~ 179 (319)
.++.++ ++.+|++.+.++.|.++| .+++.+..+ ... .....++++.. +++|+....++.+.+||..+.
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-----~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl--- 126 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-----NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP--- 126 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-----TCCEEEEEECS-SCEEEEESSSCEEEEEETTTT---
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-----CcceeEEEEeC-CEEEEEEccCCEEEEEECCcC---
Confidence 789987 478999999999999999 678777666 321 12234566653 589999999999999999853
Q ss_pred ecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCc
Q psy13998 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGY 258 (319)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 258 (319)
+.+.++... ....+++.+ .+++|+++ .++.|+++|+. .+.+.++..... ......++.+.+. +|+
T Consensus 127 ---~~~~ti~~~-------~eGwGLt~D-g~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~lNeLe~~-dG~ 192 (268)
T 3nok_A 127 ---QRERTTRYS-------GEGWGLCYW-NGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLR-GQPVELINELECA-NGV 192 (268)
T ss_dssp ---EEEEEEECS-------SCCCCEEEE-TTEEEEEC-SSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTE
T ss_pred ---cEEEEEeCC-------CceeEEecC-CCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCC-CcccccccccEEe-CCE
Confidence 555555321 123456644 23677776 58899999974 566666532211 1223345667776 789
Q ss_pred EEEEeCCCCEEEEEcC-CCceEEeecccCC-------CCCCCCCcceEEEccCCc-EEEEeC
Q psy13998 259 ISVGDSGNNRIQIFTP-DGQFLRAFGCWGS-------GDGEFKGLEGVAVMSNGN-ILVCDR 311 (319)
Q Consensus 259 ~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~-------~~~~~~~~~~l~~~~~g~-~~v~~~ 311 (319)
+|+....++.|.++|+ +|+.+..+...+. ......-+++||++|+++ +|+++-
T Consensus 193 lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 193 IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999988999999995 7888877743210 112334689999999765 888874
No 255
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.45 E-value=2.4e-11 Score=97.38 Aligned_cols=236 Identities=9% Similarity=-0.006 Sum_probs=138.6
Q ss_pred CcEEEEeCCCC----eEEEeccccccccceeeEEec---CceeeEEcCCCc-EEEEcC---------CCCeEEEEc-CCC
Q psy13998 67 NSIVVADSSNH----RVQVCFPHFDLKTNCVFLAFT---WPRGIAVGPDNS-IVVADS---------SNHRVQVFQ-SDG 128 (319)
Q Consensus 67 g~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~g~-~~~~~~---------~~~~i~~~~-~~~ 128 (319)
.++|++...++ +|.+ +|..+.+.+..+. .| +++++|+++ +|++.. .++.|.+|| .++
T Consensus 32 ~~~yV~~~~~~~~~d~vsv----ID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~ 106 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWV----SCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp TEEEEEECTTTCSSEEEEE----EETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred CeEEEECCccCCccceEEE----EECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 46888888776 8889 8888887777554 67 899999985 777752 467899999 677
Q ss_pred cEEEEecCCCcc-CCCCCCceeEEEeCCCe-EEEEeCC-CCEEEE--EecCCceee---------ecC-----------c
Q psy13998 129 TFVGKFGSMGNK-AGQLEHPHYIAVSNTNR-VIVSDSN-NHRVQI--FDVNGRVFQ---------SDG-----------T 183 (319)
Q Consensus 129 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~-~~~~~~~-~~~i~~--~~~~~~~~~---------~~~-----------~ 183 (319)
+.+.++...+.. ......|..++++|||+ +|++... ...+.+ +|....... +++ +
T Consensus 107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTS
T ss_pred CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCC
Confidence 888887533110 00124689999999985 5555544 567888 777431000 000 0
Q ss_pred eeeeeccc------CCc-------CCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCc----cccc
Q psy13998 184 FVGKFGSM------GNK-------AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEE----GQLK 246 (319)
Q Consensus 184 ~~~~~~~~------~~~-------~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~ 246 (319)
... +... +.. ..-...|. +....+.+|++.. +.+.++|..+............. ....
T Consensus 187 ~~~-vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~ 261 (368)
T 1mda_H 187 LAA-SDLAAAPAAAGIVGAQCTGAQNCSSQAA--QANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp CEE-EECCSSCCCCEECCCCSCTTSCBCSCCE--EETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred EEE-EECccccccCCeEEEEeeeeeeCCCCcc--ccccCCEEEEEcC--CEEEEEECCCCcceEEEEEEecccccccccc
Confidence 000 0000 000 00001222 2222334455544 78888887542211111100000 0111
Q ss_pred Ccce---EEEcCCC-cEEEEeC---C-----CCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc-EEEEeC-
Q psy13998 247 FPRG---VAVDDQG-YISVGDS---G-----NNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDR- 311 (319)
Q Consensus 247 ~~~~---i~~~~~g-~~~v~~~---~-----~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~v~~~- 311 (319)
.|.+ +++++++ ++|++.. . .+.+.++|. +.+.+..+. . ...|++|++++||+ +|++..
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~------v-g~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS------N-GHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE------E-EEEECEEEECCSSSCEEEEEET
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE------C-CCCcceEEECCCCCEEEEEccC
Confidence 2333 8899997 4777654 2 346679994 667777762 1 22699999999997 788887
Q ss_pred CCCeEEeC
Q psy13998 312 ENHRIQVF 319 (319)
Q Consensus 312 ~~~~i~v~ 319 (319)
.++.|.++
T Consensus 335 ~~~~VsVI 342 (368)
T 1mda_H 335 GTEVLDIY 342 (368)
T ss_dssp TTTEEEEE
T ss_pred CCCeEEEE
Confidence 68888764
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.43 E-value=2.6e-10 Score=84.73 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=128.7
Q ss_pred CceeeEEcCCCcEEEEcCCC--CeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCC
Q psy13998 99 WPRGIAVGPDNSIVVADSSN--HRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG 175 (319)
Q Consensus 99 ~~~~l~~~~~g~~~~~~~~~--~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~ 175 (319)
..+++.++. +.+|.+.+.. ..|.++| .+|+.+..+.... .....++++. .+++|+....++.+.+||..+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-----~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-----PYFGAGIVAW-RDRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-----TCCEEEEEEE-TTEEEEEESSSSEEEEEETTT
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-----CcceeEEEEe-CCEEEEEEeeCCEEEEEECCc
Confidence 347899986 7899987764 5899999 6888888775331 1223556665 478999999999999999985
Q ss_pred ceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEc
Q psy13998 176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVD 254 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ 254 (319)
. +.+.++... ....+++.+ .+++|+++. ++.|+++|+. .+.+.++..... ......++.+.+.
T Consensus 95 l------~~~~ti~~~-------~~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~-g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 95 L------TPRARFRYP-------GEGWALTSD-DSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAG-GRPLDNLNELEWV 158 (243)
T ss_dssp T------EEEEEEECS-------SCCCEEEEC-SSCEEEECS-SSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE
T ss_pred C------cEEEEEeCC-------CCceEEeeC-CCEEEEECC-CCeEEEEeCCCCeEEEEEEEccC-CcccccceeeEEe
Confidence 3 555555321 123556543 347888875 8899999974 566665532211 1122344556665
Q ss_pred CCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCC-------CCCCCCcceEEEccCCc-EEEEeC
Q psy13998 255 DQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSG-------DGEFKGLEGVAVMSNGN-ILVCDR 311 (319)
Q Consensus 255 ~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~-------~~~~~~~~~l~~~~~g~-~~v~~~ 311 (319)
+|++|+....++.|.++|+ +|+.+..+...+.. .....-+++||++|+++ +|+++-
T Consensus 159 -~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 7899999988999999995 78888877533211 12234689999999765 888874
No 257
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.39 E-value=4.8e-11 Score=95.61 Aligned_cols=212 Identities=11% Similarity=0.047 Sum_probs=125.0
Q ss_pred CCcceEEcCCCc-EEEEeC---------CCCeEEEeccccccccceeeEEe-----------cCceeeEEcCCCc-EEEE
Q psy13998 57 WPRGIAVGPDNS-IVVADS---------SNHRVQVCFPHFDLKTNCVFLAF-----------TWPRGIAVGPDNS-IVVA 114 (319)
Q Consensus 57 ~~~~v~~~~~g~-~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~g~-~~~~ 114 (319)
.| +++++|+|+ +|++.. .++.|.+ ||..+.+....+ ..|..++++|||+ +|++
T Consensus 67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsv----iD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa 141 (368)
T 1mda_H 67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEV----FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEE----ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred CC-ceEECCCCCEEEEEcccccccccCCCCCEEEE----EECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence 46 899999997 666652 3688999 898888777654 2588999999996 6666
Q ss_pred cCC-CCeEEE--EcCCCcEEEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCC-------------------------
Q psy13998 115 DSS-NHRVQV--FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNN------------------------- 165 (319)
Q Consensus 115 ~~~-~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~------------------------- 165 (319)
... ...+.+ +|... +..+...+. ..+.|+ ...|++.+.+
T Consensus 142 n~~~~~~v~V~~iD~~t--v~~i~v~~~----------~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~ 209 (368)
T 1mda_H 142 LFGSSAAAGLSVPGASD--DQLTKSASC----------FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209 (368)
T ss_dssp ECSSSCEEEEEETTTEE--EEEEECSSC----------CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred ccCCCCeEEEEEEchhh--ceEEECCCc----------eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee
Confidence 644 467888 88533 344422110 000111 1222222223
Q ss_pred ---------------------CEEEEEecCCceeeecCceeeeecccCC-cCCCCCCcee---EEEcCCC-cEEEEeC--
Q psy13998 166 ---------------------HRVQIFDVNGRVFQSDGTFVGKFGSMGN-KAGQLEHPHY---IAVSNTN-RVIVSDS-- 217 (319)
Q Consensus 166 ---------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~g-~~~v~~~-- 217 (319)
+.+.++|..+... +++..+..... .......|.+ +++++++ ++|++..
T Consensus 210 i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~ 285 (368)
T 1mda_H 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp SCBCSCCEEETTTTEEEECBSSCCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred eeCCCCccccccCCEEEEEcCCEEEEEECCCCcc----eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc
Confidence 3344444322100 01111100000 0001112333 7899987 5666544
Q ss_pred -C-----CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC-CCCEEEEEc-CCCceEEeecccCC
Q psy13998 218 -N-----NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS-GNNRIQIFT-PDGQFLRAFGCWGS 287 (319)
Q Consensus 218 -~-----~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~-~~~~i~~~~-~~g~~~~~~~~~~~ 287 (319)
. .+.+.++|. +.+.+..+ .. ...|.+|++++||+ +|++.. .++.|.++| .+++.++++
T Consensus 286 ~~~~~~~~~~~~ViD~~t~~vv~~i------~v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I----- 353 (368)
T 1mda_H 286 SRSCLAAAENTSSVTASVGQTSGPI------SN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV----- 353 (368)
T ss_dssp SSCTTSCEEEEEEEESSSCCEEECC------EE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC-----
T ss_pred cCcccccCCCEEEEECCCCeEEEEE------EC-CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE-----
Confidence 2 245669996 45566555 21 22589999999986 788888 699999999 567888887
Q ss_pred CCCCCCCcceEEEccC
Q psy13998 288 GDGEFKGLEGVAVMSN 303 (319)
Q Consensus 288 ~~~~~~~~~~l~~~~~ 303 (319)
.....|++|++.++
T Consensus 354 --~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 354 --ELDKGPESLSVQNE 367 (368)
T ss_dssp --CCCSCCCEEECCCC
T ss_pred --ECCCCCCEEEeecC
Confidence 23457888888654
No 258
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.39 E-value=2.1e-10 Score=91.46 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=134.7
Q ss_pred CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEec----CceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEEE
Q psy13998 58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGK 133 (319)
Q Consensus 58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 133 (319)
+.++.++++|.+|+... + +.. ++.. +.....+. ......+. ++.+|+. +.++.+..++.+|+....
T Consensus 62 ~~~~~~~~~g~l~v~t~--~-l~~----~d~~-g~~~~~~~~~~~~~~~~~~~-~~~l~v~-t~~~~l~~~d~~g~~~~~ 131 (330)
T 3hxj_A 62 ECRPSIGKDGTIYFGSD--K-VYA----INPD-GTEKWRFDTKKAIVSDFTIF-EDILYVT-SMDGHLYAINTDGTEKWR 131 (330)
T ss_dssp EECCEETTTTEECCSSC--E-EEE----ECCC-GGGGGGSCC-----CCEEEE-TTEEEEE-CTTSEEEEECTTSCEEEE
T ss_pred ccceEEecCCcEEEecC--c-EEE----ECCC-CcEEEEEECCCCcccCceEE-CCEEEEE-ecCCEEEEEcCCCCEEEE
Confidence 46778888888887543 2 777 6542 22221111 11223333 6667765 456789999976877666
Q ss_pred ecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEE
Q psy13998 134 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI 213 (319)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 213 (319)
.... ...+..+..++++++|+. +.++.+..++..+. ....+.. .......+.+++++.+|
T Consensus 132 ~~~~------~~~~~~~~~~~~g~l~vg-t~~~~l~~~d~~g~-------~~~~~~~------~~~~~~~~~~d~~g~l~ 191 (330)
T 3hxj_A 132 FKTK------KAIYATPIVSEDGTIYVG-SNDNYLYAINPDGT-------EKWRFKT------NDAITSAASIGKDGTIY 191 (330)
T ss_dssp EECS------SCCCSCCEECTTSCEEEE-CTTSEEEEECTTSC-------EEEEEEC------SSCCCSCCEECTTCCEE
T ss_pred EcCC------CceeeeeEEcCCCEEEEE-cCCCEEEEECCCCC-------EeEEEec------CCCceeeeEEcCCCEEE
Confidence 5322 123456677878887775 45688999988743 2222211 11234557788889988
Q ss_pred EEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCC
Q psy13998 214 VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFK 293 (319)
Q Consensus 214 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~ 293 (319)
++. +.++.+|.+++...... .....+.+++++++|.+|++.. ++.|..++.+|+.+..+. ....
T Consensus 192 v~t---~~l~~~d~~g~~~~~~~------~~~~~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~------~~~~ 255 (330)
T 3hxj_A 192 FGS---DKVYAINPDGTEKWNFY------AGYWTVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKWRFK------TGKR 255 (330)
T ss_dssp EES---SSEEEECTTSCEEEEEC------CSSCCCSCCEECTTSCEEEEET-TTEEEEECTTSCEEEEEE------CSSC
T ss_pred EEe---CEEEEECCCCcEEEEEc------cCCcceeceEECCCCeEEEEcC-CCeEEEECCCCCEeEEee------CCCC
Confidence 877 78999998887776663 2224467889999999988865 578999998888877663 2223
Q ss_pred CcceEEEccCCcEEEEeCC
Q psy13998 294 GLEGVAVMSNGNILVCDRE 312 (319)
Q Consensus 294 ~~~~l~~~~~g~~~v~~~~ 312 (319)
.+..+.++++|++|++...
T Consensus 256 ~~~~~~~~~~g~l~v~t~~ 274 (330)
T 3hxj_A 256 IESSPVIGNTDTIYFGSYD 274 (330)
T ss_dssp CCSCCEECTTSCEEEECTT
T ss_pred ccccceEcCCCeEEEecCC
Confidence 3456777878888876654
No 259
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=99.38 E-value=2.4e-10 Score=90.66 Aligned_cols=193 Identities=15% Similarity=0.239 Sum_probs=124.7
Q ss_pred CCCCcceEEcCCCcEEEEeC------------CCCeEEEeccccccccc--e--eeE--E--e----cCceeeEEcC--C
Q psy13998 55 FTWPRGIAVGPDNSIVVADS------------SNHRVQVCFPHFDLKTN--C--VFL--A--F----TWPRGIAVGP--D 108 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~~------------~~~~v~~~~~~~~~~~~--~--~~~--~--~----~~~~~l~~~~--~ 108 (319)
...+..|++.++|.+|++++ .+|.|.+ ++..+. . .+. . + -.|+++.+.+ +
T Consensus 49 ~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~----~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 49 DNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILL----MDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CSCCCEEEECTTSEEEEEECCC-----------CCEEEE----EETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred CCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEE----EecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 35789999999999888872 6889999 665421 1 111 1 1 1788998865 3
Q ss_pred C--cEEEEcCC--CCeEEEEc--CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----------------C
Q psy13998 109 N--SIVVADSS--NHRVQVFQ--SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----------------N 165 (319)
Q Consensus 109 g--~~~~~~~~--~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----------------~ 165 (319)
+ .+|++... +.+|.+|+ .++.....+.... ......|++++++++|.+|++... .
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~--g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR--HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC--CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc--cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence 5 47777655 45555555 5555443332221 124578999999999999998651 2
Q ss_pred CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCC--CCEE--EEeCCCCC
Q psy13998 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVN--GRVI--TSFGSEGS 240 (319)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~--~~~~--~~~~~~~~ 240 (319)
+.++.++.. +.. .. ......|++++++|++ .+|++++..++|++|+.+ +... +.+.
T Consensus 203 g~vyr~d~~--------~~~-~~------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---- 263 (355)
T 3sre_A 203 SFVTYYSPN--------DVR-VV------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---- 263 (355)
T ss_dssp EEEEEECTT--------CCE-EE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE----
T ss_pred cEEEEEECC--------eEE-Ee------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe----
Confidence 456666542 111 11 2234679999999998 688999989999999953 4332 2221
Q ss_pred CcccccCcceEEEcC-CCcEEEEeC-CCCEEEEEcCC
Q psy13998 241 EEGQLKFPRGVAVDD-QGYISVGDS-GNNRIQIFTPD 275 (319)
Q Consensus 241 ~~~~~~~~~~i~~~~-~g~~~v~~~-~~~~i~~~~~~ 275 (319)
....|.++++++ +|++|+++. ...+|..|+++
T Consensus 264 ---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 264 ---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp ---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred ---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 124689999999 599999764 33455555544
No 260
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=99.38 E-value=4e-10 Score=88.95 Aligned_cols=210 Identities=13% Similarity=0.158 Sum_probs=126.1
Q ss_pred EecCceeeEEcCCCcEEEEcCCCCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCC----CeEEEEe--CCCCEE
Q psy13998 96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNT----NRVIVSD--SNNHRV 168 (319)
Q Consensus 96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~----g~~~~~~--~~~~~i 168 (319)
.+..|.+|++.|+|++|++....++|++++.+ ++.......+.........+.+|+++|+ +.+|++- ...++|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 46789999999999999998778899999854 5432221111111223457799999984 7888753 345788
Q ss_pred EEEecCCc-----eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-------------CCCeEEEEeCCCC
Q psy13998 169 QIFDVNGR-----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-------------NNHRVQIFDVNGR 230 (319)
Q Consensus 169 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-------------~~~~i~~~~~~~~ 230 (319)
..|...+. .......++..+.. ........|+++|+|.+|++.. ..+.|.+++++|.
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~-----~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPK-----GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECC-----CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCC-----CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 88877641 11101111222211 1223456799999999999853 2478888888775
Q ss_pred EE--------EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC---CEEEEEcCCCce---EEeec--ccCCC------
Q psy13998 231 VI--------TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN---NRIQIFTPDGQF---LRAFG--CWGSG------ 288 (319)
Q Consensus 231 ~~--------~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~---~~i~~~~~~g~~---~~~~~--~~~~~------ 288 (319)
.. ..+ ...+..|.+++++|+|.+|++.... ..|......+.. ...-. ..+..
T Consensus 185 ip~~nPf~~~~i~------a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~ 258 (347)
T 3das_A 185 PAPGNPFPGSPVY------SYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW 258 (347)
T ss_dssp BCTTCSSTTCCEE------EBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred ccCCCCCCCCeEE------eeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence 21 111 1234568999999999999998754 345554432211 00000 00000
Q ss_pred CCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998 289 DGEFKGLEGVAVMSNGNILVCDRENHRIQ 317 (319)
Q Consensus 289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~ 317 (319)
..+...|.+|+|. +|.+|++.-..++|.
T Consensus 259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~l~ 286 (347)
T 3das_A 259 STDEASPSGIAYA-EGSVWMAGLRGERLW 286 (347)
T ss_dssp CTTTCCEEEEEEE-TTEEEEEESTTCSEE
T ss_pred CCCCCCCcceEEE-cCceeeccccCCEEE
Confidence 0111367889887 578888877666553
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.38 E-value=2.1e-10 Score=85.93 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=128.1
Q ss_pred CcceEEcCCCcEEEEeCCCC--eEEEeccccccccceeeEEec---Cc--eeeEEcCCCcEEEEcCCCCeEEEEc-CCCc
Q psy13998 58 PRGIAVGPDNSIVVADSSNH--RVQVCFPHFDLKTNCVFLAFT---WP--RGIAVGPDNSIVVADSSNHRVQVFQ-SDGT 129 (319)
Q Consensus 58 ~~~v~~~~~g~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~---~~--~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~ 129 (319)
..+|.++ ++.+|++.+.++ .|++ +|+.+++...... .+ .++++. .+++|++...++.+.+|| .+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~----vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRK----VDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEE----ECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCEEEEECCCCCCceEEE----EECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECccCc
Confidence 3889998 788999887665 8999 9998888777554 22 456665 357999988899999999 6788
Q ss_pred EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998 130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209 (319)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (319)
.+.++...+ ...+++.+ .+.+|++++ +++|.++|..+. +.+..+..... ......++.+.+. +
T Consensus 119 ~~~ti~~~~-------eG~glt~d-g~~L~~SdG-s~~i~~iDp~T~------~v~~~I~V~~~-g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 119 QVRSFNYDG-------EGWGLTHN-DQYLIMSDG-TPVLRFLDPESL------TPVRTITVTAH-GEELPELNELEWV-D 181 (262)
T ss_dssp EEEEEECSS-------CCCCEEEC-SSCEEECCS-SSEEEEECTTTC------SEEEEEECEET-TEECCCEEEEEEE-T
T ss_pred EEEEEECCC-------CceEEecC-CCEEEEECC-CCeEEEEcCCCC------eEEEEEEeccC-CccccccceeEEE-C
Confidence 888885431 22556543 346777764 788999998853 33333322100 0112334556665 7
Q ss_pred CcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCC------cccccCcceEEEcCCC-cEEEEeCCCCEEE
Q psy13998 210 NRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSE------EGQLKFPRGVAVDDQG-YISVGDSGNNRIQ 270 (319)
Q Consensus 210 g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~ 270 (319)
|++|+....++.|.++|+ +|+.+..+...+.. ......+++||++|++ ++||++-.=..++
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence 899999988999999996 67777777443211 1123467999999975 6888875433333
No 262
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.37 E-value=9.9e-11 Score=94.03 Aligned_cols=215 Identities=11% Similarity=0.106 Sum_probs=126.3
Q ss_pred CCCcceEEcCCCcEEEEeC---------CCCeEEEeccccccccceeeEEecCceeeEEcCCCcEEEEcCC-----CCeE
Q psy13998 56 TWPRGIAVGPDNSIVVADS---------SNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSS-----NHRV 121 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----~~~i 121 (319)
..+..+.+ +|+.++... .+..|.+ ++..+... ..+..+..++|+|+|+.++.... ...|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~----~d~~~~~~-~~l~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVI----ENLKNNAR-RFIENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEE----EETTTCCE-EEEESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEE----EeCCCCce-EEcccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 44556667 676443321 2456777 77765443 33466788999999975544322 2358
Q ss_pred EEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC---------------------------CCEEEEEecC
Q psy13998 122 QVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---------------------------NHRVQIFDVN 174 (319)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~---------------------------~~~i~~~~~~ 174 (319)
++++.++.....+.. .. . +..++|+|+|+.++.... ...|.+|++.
T Consensus 88 ~~~~~~~g~~~~l~~-----~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 88 WVADLETLSSKKILE-----AK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEETTTTEEEEEEE-----ES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred EEEECCCCceEEEEc-----CC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 888855443333321 11 2 688999999975554331 2568888876
Q ss_pred CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC---------CCeEEEEeCCCCEEEEeCCCCCCcccc
Q psy13998 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---------NHRVQIFDVNGRVITSFGSEGSEEGQL 245 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (319)
+. +.+..+.. . ....++++|+| ++++... ...|++++ .++. ..+. .+
T Consensus 161 ~~------~~~~~l~~-------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~------~~- 216 (347)
T 2gop_A 161 SE------EVIEEFEK-------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKE-EKMF------EK- 216 (347)
T ss_dssp TT------EEEEEEEE-------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEE-EEEE------EE-
T ss_pred CC------eEEeeecC-------C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCce-EEec------cC-
Confidence 53 22122211 1 35678899999 7666532 23677788 5543 3331 11
Q ss_pred cCcceEEEcCCCcEE-EEeCC-------CCEEEEEcCCCceEEeecccCCCCCCCCCcce-EEEccCCcEEEEeCCCCeE
Q psy13998 246 KFPRGVAVDDQGYIS-VGDSG-------NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEG-VAVMSNGNILVCDRENHRI 316 (319)
Q Consensus 246 ~~~~~i~~~~~g~~~-v~~~~-------~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~-l~~~~~g~~~v~~~~~~~i 316 (319)
..... ++|+|+.+ ++... ...|++|+ .++..... ..+...+.. ++|+ || +++++..++.+
T Consensus 217 ~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~------~~~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 217 VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGIL------DEVDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESS------TTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred cceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceEecc------ccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 22222 38898644 44332 35899999 66654433 233345665 8898 88 88888888888
Q ss_pred EeC
Q psy13998 317 QVF 319 (319)
Q Consensus 317 ~v~ 319 (319)
++|
T Consensus 286 ~l~ 288 (347)
T 2gop_A 286 NLY 288 (347)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 263
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=99.36 E-value=1.8e-10 Score=91.36 Aligned_cols=189 Identities=13% Similarity=0.244 Sum_probs=121.5
Q ss_pred CceeeEEcCCCcEEEEc------------CCCCeEEEEcCCC--cEEEEecCCCc-cCCCCCCceeEEEeC--CC--eEE
Q psy13998 99 WPRGIAVGPDNSIVVAD------------SSNHRVQVFQSDG--TFVGKFGSMGN-KAGQLEHPHYIAVSN--TN--RVI 159 (319)
Q Consensus 99 ~~~~l~~~~~g~~~~~~------------~~~~~i~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~l~~~~--~g--~~~ 159 (319)
.+.++++.++|.+|++. ..++.|.++|.+. .....+...+. .....-.|+++.+.+ ++ ++|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45667777777776665 2578899999542 12233332221 111234789999866 45 578
Q ss_pred EEeCC--CCEEEEEecC--CceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-----------------C
Q psy13998 160 VSDSN--NHRVQIFDVN--GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-----------------N 218 (319)
Q Consensus 160 ~~~~~--~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-----------------~ 218 (319)
+++.. +.++.+|+.+ +... ..+..+. ......|+.++++++|.+|+++. .
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~----~~~~~~~-----g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSL----LHLKTIR-----HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEE----EEEEEEC-----CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred EEECCCCCCeEEEEEEECCCCEE----EEEeccc-----cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence 88765 4566666543 2211 1222221 12456799999999999998865 2
Q ss_pred CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEcC--CCceE--EeecccCCCCCCCC
Q psy13998 219 NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTP--DGQFL--RAFGCWGSGDGEFK 293 (319)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~~--~g~~~--~~~~~~~~~~~~~~ 293 (319)
.+.|+.+++. + ++.+ ...+..|++|+++||+ .+|++++..++|++|+. +|+.. +.+. ...
T Consensus 202 ~g~vyr~d~~-~-~~~~------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-------~~g 266 (355)
T 3sre_A 202 WSFVTYYSPN-D-VRVV------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-------FDT 266 (355)
T ss_dssp CEEEEEECTT-C-CEEE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-------CSS
T ss_pred ccEEEEEECC-e-EEEe------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-------CCC
Confidence 4678888874 2 2223 3456789999999998 58999999999999994 34432 2221 135
Q ss_pred CcceEEEcc-CCcEEEEeC
Q psy13998 294 GLEGVAVMS-NGNILVCDR 311 (319)
Q Consensus 294 ~~~~l~~~~-~g~~~v~~~ 311 (319)
.|.++++++ +|++|+++.
T Consensus 267 ~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 267 LVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEEEEEECTTTCCEEEEEE
T ss_pred CCceEEEeCCCCcEEEEec
Confidence 799999999 599999764
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.36 E-value=3.5e-10 Score=84.73 Aligned_cols=185 Identities=10% Similarity=0.065 Sum_probs=127.8
Q ss_pred CcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-c-Cc--eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEE
Q psy13998 58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-T-WP--RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVG 132 (319)
Q Consensus 58 ~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~-~~--~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~ 132 (319)
..+|.++ ++.+|++.+.++.|++ +|+.+++..... . .+ .++++.. +++|++...++.+.+|| .+.+.+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~----iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQ----LSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEE----CCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEE----EECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence 4789997 5789999999999999 898887766544 2 22 4577753 57999988899999999 6778888
Q ss_pred EecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcE
Q psy13998 133 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 212 (319)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 212 (319)
++... ....+++.+ .+.+|+++ .+++|.++|..+. +.+..+..... ......++.+.+. +|++
T Consensus 131 ti~~~-------~eGwGLt~D-g~~L~vSd-Gs~~l~~iDp~T~------~v~~~I~V~~~-g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 131 TTRYS-------GEGWGLCYW-NGKLVRSD-GGTMLTFHEPDGF------ALVGAVQVKLR-GQPVELINELECA-NGVI 193 (268)
T ss_dssp EEECS-------SCCCCEEEE-TTEEEEEC-SSSEEEEECTTTC------CEEEEEECEET-TEECCCEEEEEEE-TTEE
T ss_pred EEeCC-------CceeEEecC-CCEEEEEC-CCCEEEEEcCCCC------eEEEEEEeCCC-CcccccccccEEe-CCEE
Confidence 88542 123566654 35677777 5889999998854 33333322110 1122345666665 7899
Q ss_pred EEEeCCCCeEEEEeC-CCCEEEEeCCCCC-------CcccccCcceEEEcCCC-cEEEEeCC
Q psy13998 213 IVSDSNNHRVQIFDV-NGRVITSFGSEGS-------EEGQLKFPRGVAVDDQG-YISVGDSG 265 (319)
Q Consensus 213 ~v~~~~~~~i~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~g-~~~v~~~~ 265 (319)
|+.....+.|.++|+ +|+.+..+...+. ......-+++||++|++ ++|+++-.
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 999888899999996 6777777643211 01123467999999974 78888753
No 265
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=99.35 E-value=1.5e-09 Score=89.86 Aligned_cols=152 Identities=12% Similarity=0.235 Sum_probs=94.9
Q ss_pred CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce--eeEEec----------CceeeEEcC----CCcEEEEcCC-
Q psy13998 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC--VFLAFT----------WPRGIAVGP----DNSIVVADSS- 117 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~----------~~~~l~~~~----~g~~~~~~~~- 117 (319)
+..|++|++.|+|++||+....++|++ ++..+.. .+..+. .+.+|+++| ++.+|++.+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~----~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILR----VNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEE----ECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEE----EECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 789999999999999999887778888 5543221 122222 345899999 5778888643
Q ss_pred -----------CCeEEEEcCCC---cE--EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----------------
Q psy13998 118 -----------NHRVQVFQSDG---TF--VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN----------------- 164 (319)
Q Consensus 118 -----------~~~i~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~----------------- 164 (319)
...|..++.+. +. ...+.. .......+.+..|+|+++|++|++.+.
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~-~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~ 180 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLA-GLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQH 180 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEE-EECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEE-cCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccc
Confidence 34688777321 11 111110 001122356899999999999998543
Q ss_pred ---------------CCEEEEEecCCceeeecCce-----eeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC
Q psy13998 165 ---------------NHRVQIFDVNGRVFQSDGTF-----VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN 218 (319)
Q Consensus 165 ---------------~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 218 (319)
.++|..++.+|.+.. +..+ ...+ ......|.+++++++|.+|+++..
T Consensus 181 ~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~-~Npf~~~~~~ei~------a~G~RNp~gla~dp~G~L~~~d~g 247 (454)
T 1cru_A 181 TPTQQELNGKDYHTYMGKVLRLNLDGSIPK-DNPSFNGVVSHIY------TLGHRNPQGLAFTPNGKLLQSEQG 247 (454)
T ss_dssp CCCHHHHHTTCCTTCSSEEEEECTTSCCCT-TCCEETTEECSEE------EBCCSEEEEEEECTTSCEEEEEEC
T ss_pred ccccccccccCCCCCCeeEEEEeCCCCCCC-CCCCCCCCcceEE------EECCCCcceEEECCCCCEEEEecC
Confidence 256777776653210 0000 0011 123467899999999999999864
No 266
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.33 E-value=5.4e-11 Score=99.32 Aligned_cols=227 Identities=12% Similarity=0.119 Sum_probs=139.3
Q ss_pred CCc-EEEEeCCCCeEEEeccccccccceeeE--Ee---cCceeeEE-c-CCCcEEEEc------------------CCCC
Q psy13998 66 DNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--AF---TWPRGIAV-G-PDNSIVVAD------------------SSNH 119 (319)
Q Consensus 66 ~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~---~~~~~l~~-~-~~g~~~~~~------------------~~~~ 119 (319)
||+ +|+++..+.+|.+ .|+.+.+... .+ ..|.++++ . |+++.++++ ..++
T Consensus 100 DG~~lfVnd~~~~rVav----Idl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVAR----VRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEETTTTEEEE----EETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCEEEEEcCCCCEEEE----EECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 666 7888888999999 8888777555 43 36889998 4 787654444 2345
Q ss_pred eEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CC--------------CEEEEEecCCce-eeecC
Q psy13998 120 RVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN--------------HRVQIFDVNGRV-FQSDG 182 (319)
Q Consensus 120 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~--------------~~i~~~~~~~~~-~~~~~ 182 (319)
.+.++| .+.+...++... ..|..++++++|++.++.+ .. ..+.++|..... ...+|
T Consensus 176 ~vtvID~~t~~v~~qI~Vg-------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVS-------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp EEEEEETTTTEEEEEEEES-------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred eEEEEECCCCeEEEEEEeC-------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 788888 445666666432 2468899999987655544 32 335555542110 00011
Q ss_pred ce-----eeeeccc---CCc----CCCCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCCCC-------------EEEEeC
Q psy13998 183 TF-----VGKFGSM---GNK----AGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGR-------------VITSFG 236 (319)
Q Consensus 183 ~~-----~~~~~~~---~~~----~~~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~~~-------------~~~~~~ 236 (319)
+. +..+... +.. ......|.++.++|||+ +|+++..++.|.++|.+.. .....
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v- 327 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP- 327 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-
T ss_pred CeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-
Confidence 10 1111000 000 01124689999999996 5677778899999997632 22222
Q ss_pred CCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-----------CceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998 237 SEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-----------GQFLRAFGCWGSGDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 237 ~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 305 (319)
.-...|..++|+++|+.|++...++.|.+|+.+ .+.+..+.. +..++|.....++.++|||+
T Consensus 328 ------~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 328 ------ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp ------BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTTSTTCCSS
T ss_pred ------CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-ccccccceeccceEeCCCCC
Confidence 122468999999999999999999999999943 244544421 11112333346667889999
Q ss_pred E-EEEeC
Q psy13998 306 I-LVCDR 311 (319)
Q Consensus 306 ~-~v~~~ 311 (319)
+ |+++.
T Consensus 401 ~l~~~Nk 407 (595)
T 1fwx_A 401 WLVCLSK 407 (595)
T ss_dssp EEEEEES
T ss_pred EEEEcCC
Confidence 4 44443
No 267
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.31 E-value=4.5e-11 Score=97.78 Aligned_cols=222 Identities=8% Similarity=-0.039 Sum_probs=120.9
Q ss_pred CCCCcceEEcCCCcEEEEe-C--CCCeEEEeccccccccceeeEEec---C-ceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998 55 FTWPRGIAVGPDNSIVVAD-S--SNHRVQVCFPHFDLKTNCVFLAFT---W-PRGIAVGPDNSIVVADSSNHRVQVFQSD 127 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~-~--~~~~v~~~~~~~~~~~~~~~~~~~---~-~~~l~~~~~g~~~~~~~~~~~i~~~~~~ 127 (319)
...+..++++|+|+.++.. . .+..|.+ ++..+........ . ...+.|+|+|+.++....++.|++|+..
T Consensus 35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~----~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYL----LNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CCCTTSCCBCTTSCEEEEEECTTSSCEEEE----EETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred ceeeecCcCCCCCCEEEEEEecCCCceEEE----EECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence 3457889999999965544 2 2346777 7776554332111 1 1237899999877666666789999954
Q ss_pred -CcEEEEecCCCccCCCCCCce--e----------------EEEeCCCeEEEEe-----CCCCEEEEEecCCceeeecCc
Q psy13998 128 -GTFVGKFGSMGNKAGQLEHPH--Y----------------IAVSNTNRVIVSD-----SNNHRVQIFDVNGRVFQSDGT 183 (319)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~~~~--~----------------l~~~~~g~~~~~~-----~~~~~i~~~~~~~~~~~~~~~ 183 (319)
++......... . ..+. . ..++|+++.++.. ..+..|.+||+.+. +
T Consensus 111 ~~~~~~~~~~~~----~-~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g------~ 179 (396)
T 3c5m_A 111 TLEEQVIYTVDE----E-WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG------E 179 (396)
T ss_dssp TCCEEEEEECCT----T-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC------C
T ss_pred CCCcEEEEeccc----c-cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC------c
Confidence 44333322110 0 0000 0 1234555433221 34567888888653 2
Q ss_pred eeeeecccCCcCCCCCCceeEEEcC-CCc-EEEEeCC-C----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCC
Q psy13998 184 FVGKFGSMGNKAGQLEHPHYIAVSN-TNR-VIVSDSN-N----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQ 256 (319)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~v~~~~-~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 256 (319)
..... ........++++| ++. ++++... . ..|++++.++.....+... .....+..++|+|+
T Consensus 180 ~~~~~-------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~~~~~~~~~~~spd 248 (396)
T 3c5m_A 180 LEVIH-------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH----AEGESCTHEFWIPD 248 (396)
T ss_dssp EEEEE-------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC----CTTEEEEEEEECTT
T ss_pred EEeec-------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc----CCCccccceEECCC
Confidence 21111 1123356688999 675 4444332 2 4799999876554444210 01123567899999
Q ss_pred CcE-EEEeC--CC--CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEcc-CCcEEEEe
Q psy13998 257 GYI-SVGDS--GN--NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMS-NGNILVCD 310 (319)
Q Consensus 257 g~~-~v~~~--~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~v~~ 310 (319)
|+. +++.. .. +.|++|+..+.....+... . ... ++++| ||++++..
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~----~~~-~~~s~~dg~~l~~~ 300 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P----PCS-HLMSNFDGSLMVGD 300 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C----SEE-EEEECSSSSEEEEE
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C----CCC-CCccCCCCceEEEe
Confidence 974 44322 22 4499999643332222110 1 122 78999 99977654
No 268
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.29 E-value=2.6e-10 Score=101.03 Aligned_cols=193 Identities=11% Similarity=-0.009 Sum_probs=113.4
Q ss_pred ceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC---------CEEE
Q psy13998 100 PRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN---------HRVQ 169 (319)
Q Consensus 100 ~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~---------~~i~ 169 (319)
...+.|+|+|++++++ ++.|++|+ .+++....+..... ........+++++|||+.++..+.+ +.+.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF-DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT-TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh-hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 4578999999888776 88999999 55665544432110 0111122458899999877766543 5567
Q ss_pred EEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCccc-----
Q psy13998 170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQ----- 244 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----- 244 (319)
+||+.+... . .+ ..+.......+++|+|+.++.. .++.|++|+..+....++...+.....
T Consensus 96 ~~d~~~~~~------~-~l------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 96 IYDLNKRQL------I-TE------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EEETTTTEE------C-CS------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred EEECCCCcE------E-Ec------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence 899886422 1 11 1222345778999999766554 367899999755444444322211000
Q ss_pred --------ccCcceEEEcCCCcEEEEeCCC------------------------------------CEEEEEcCCC---c
Q psy13998 245 --------LKFPRGVAVDDQGYISVGDSGN------------------------------------NRIQIFTPDG---Q 277 (319)
Q Consensus 245 --------~~~~~~i~~~~~g~~~v~~~~~------------------------------------~~i~~~~~~g---~ 277 (319)
+....+++|+|||+.++..+.+ ..|++|+.++ .
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~ 241 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV 241 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence 1223468999999866554211 1577777554 3
Q ss_pred ---eEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998 278 ---FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC 309 (319)
Q Consensus 278 ---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~ 309 (319)
....+..+....++...+..++|+|||++++.
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~ 276 (740)
T 4a5s_A 242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQ 276 (740)
T ss_dssp SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEE
Confidence 22333110000024556788999999995443
No 269
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.28 E-value=5.8e-10 Score=98.07 Aligned_cols=218 Identities=11% Similarity=-0.030 Sum_probs=124.4
Q ss_pred CCcceEEcCCCcEEE-----EeCCCCeEEEeccccccccceee-E-EecCc--eeeEEcCCCcEEEEcCCCC--------
Q psy13998 57 WPRGIAVGPDNSIVV-----ADSSNHRVQVCFPHFDLKTNCVF-L-AFTWP--RGIAVGPDNSIVVADSSNH-------- 119 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~-----~~~~~~~v~~~~~~~~~~~~~~~-~-~~~~~--~~l~~~~~g~~~~~~~~~~-------- 119 (319)
.+.+++|+|||++++ .++.+..|++ |++.+++.. . .+... .+++|+|||+.++..+.+.
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v----~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHV----IDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEE----EETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEE----EECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 467899999999766 3334578999 888776654 2 23333 6899999998665554443
Q ss_pred -----eEEEEcCC-Cc--EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC----EEEEEecCCceeeecCceeee
Q psy13998 120 -----RVQVFQSD-GT--FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH----RVQIFDVNGRVFQSDGTFVGK 187 (319)
Q Consensus 120 -----~i~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~ 187 (319)
.|++|+.. +. ....+.. ..+.....++.++|+|+.++....++ .|.+++..+. .+...
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~------~~~~l 267 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHER----TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK------DFRLL 267 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECC----CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS------SCEEE
T ss_pred CCCCCEEEEEECCCCchhceEEEec----CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC------ceEEe
Confidence 39999954 32 1222211 12223457889999997666544333 5666654321 11111
Q ss_pred ecccCCcCCCCCCceeEEEcCCCcEEEEeC---CCCeEEEEeCCC-CE---EEEeCCCCCCcccccCcceEEEcCCCcEE
Q psy13998 188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NNHRVQIFDVNG-RV---ITSFGSEGSEEGQLKFPRGVAVDDQGYIS 260 (319)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~---~~~~i~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~~ 260 (319)
. .+........+ ++|.+|+... .++.|++|+.++ .. ...+. ......+.+++++ ++.++
T Consensus 268 ~-------~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-----~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 268 V-------KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-----EDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp E-------ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-----CCSSCEEEEEEEE-TTEEE
T ss_pred e-------cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec-----CCCCCeEEEEEEE-CCEEE
Confidence 1 01111223333 4555666554 358899999753 21 22221 0111234567777 66788
Q ss_pred EEeCCCCEEEEE--cCCCceEEeecccCCCCCCCCCcceEEEccCCcEE
Q psy13998 261 VGDSGNNRIQIF--TPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL 307 (319)
Q Consensus 261 v~~~~~~~i~~~--~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 307 (319)
++...++...+| +.+|+..+.+.. .....+.++++++++..+
T Consensus 334 ~~~~~dg~~~l~~~~~~g~~~~~l~~-----~~~~~v~~~~~s~d~~~l 377 (695)
T 2bkl_A 334 LEYLKDATSEVRVATLKGKPVRTVQL-----PGVGAASNLMGLEDLDDA 377 (695)
T ss_dssp EEEEETTEEEEEEEETTCCEEEECCC-----SSSSEECCCBSCTTCSEE
T ss_pred EEEEECCEEEEEEEeCCCCeeEEecC-----CCCeEEEEeecCCCCCEE
Confidence 888777765555 556776665521 113345667777777633
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.28 E-value=3.8e-09 Score=78.55 Aligned_cols=194 Identities=13% Similarity=0.144 Sum_probs=130.4
Q ss_pred CCCcceEEcCCCcEEEEeCCC--CeEEEeccccccccceeeEEec---Cc--eeeEEcCCCcEEEEcCCCCeEEEEc-CC
Q psy13998 56 TWPRGIAVGPDNSIVVADSSN--HRVQVCFPHFDLKTNCVFLAFT---WP--RGIAVGPDNSIVVADSSNHRVQVFQ-SD 127 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~---~~--~~l~~~~~g~~~~~~~~~~~i~~~~-~~ 127 (319)
....++.|+. +.+|.+.+.. ..|++ +|+.+++...... .+ .++++. .+++|+....++.+.+|| .+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~----vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRK----VDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEE----EETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTT
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEE----EECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCc
Confidence 3457899985 7899988765 48999 9998888777554 22 456665 367999988899999999 57
Q ss_pred CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207 (319)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (319)
.+.+.++... ....+++.+ .+.+|++++ +++|.++|..+. +.+.++..... ......++.+.+.
T Consensus 95 l~~~~ti~~~-------~~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t~------~~~~~I~V~~~-g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 95 LTPRARFRYP-------GEGWALTSD-DSHLYMSDG-TAVIRKLDPDTL------QQVGSIKVTAG-GRPLDNLNELEWV 158 (243)
T ss_dssp TEEEEEEECS-------SCCCEEEEC-SSCEEEECS-SSEEEEECTTTC------CEEEEEECEET-TEECCCEEEEEEE
T ss_pred CcEEEEEeCC-------CCceEEeeC-CCEEEEECC-CCeEEEEeCCCC------eEEEEEEEccC-CcccccceeeEEe
Confidence 7888887543 133566643 357888875 789999998853 33333322110 1112334555554
Q ss_pred CCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCC-------cccccCcceEEEcCCC-cEEEEeCCCCEEEEE
Q psy13998 208 NTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSE-------EGQLKFPRGVAVDDQG-YISVGDSGNNRIQIF 272 (319)
Q Consensus 208 ~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~ 272 (319)
+|++|+....++.|.++|+ +|+.+..+...+.. .....-+++||++|++ ++|+++-.=..++..
T Consensus 159 -~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v 231 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEI 231 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred -CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEE
Confidence 7899988888889999996 67777776533211 1123467999999975 688887543344433
No 271
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.28 E-value=2.9e-09 Score=93.88 Aligned_cols=224 Identities=13% Similarity=0.046 Sum_probs=127.4
Q ss_pred CCcceEEcCCCcEEEEeCCC-----CeEEEeccccccccceeeE-Ee--cCceeeEEcCCCcEEEEcCCCC---------
Q psy13998 57 WPRGIAVGPDNSIVVADSSN-----HRVQVCFPHFDLKTNCVFL-AF--TWPRGIAVGPDNSIVVADSSNH--------- 119 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~-~~--~~~~~l~~~~~g~~~~~~~~~~--------- 119 (319)
.+.+++|+|||++++..... ..|++ |++.+++... .. ....+++|+|||+.++....+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v----~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKF----MKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEE----EETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEE----EECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 45688999999976644322 28999 8887766543 12 1356799999997554433332
Q ss_pred -------eEEEEcCCC-cE--EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----CCEEEEEecCCceeeecCc-
Q psy13998 120 -------RVQVFQSDG-TF--VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----NHRVQIFDVNGRVFQSDGT- 183 (319)
Q Consensus 120 -------~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----~~~i~~~~~~~~~~~~~~~- 183 (319)
.|++|+..+ .. ...+.. ..+.....++.++|+|+.++.... +..|.++++.+......+.
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~----~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEF----PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECC----TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccCCCCEEEEEECCCCcccceEEecc----CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 389998533 21 122211 112234568899999976654432 5689999876300000011
Q ss_pred eeeeecccCCcCCCCCCceeEEEcCCCc-EEEEeCC---CCeEEEEeCCCCE---EEEeCCCCCCcccccCcceEEEcCC
Q psy13998 184 FVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSN---NHRVQIFDVNGRV---ITSFGSEGSEEGQLKFPRGVAVDDQ 256 (319)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~~---~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~ 256 (319)
....+. .+..... -.++++|. +++.... +..|++|+.++.. ...+... .....+.+++++++
T Consensus 278 ~~~~l~------~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 278 KWVKLI------DNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVACVRS 346 (710)
T ss_dssp CCEEEE------CSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEEEETT
T ss_pred ceEEee------CCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC----CCCCeEEEEEEEcC
Confidence 111111 0111112 24666664 5555443 4579999975421 1222111 11123567888877
Q ss_pred CcEEEEeCCCC--EEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998 257 GYISVGDSGNN--RIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 257 g~~~v~~~~~~--~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 305 (319)
+.++++...++ +|++|+. +|+.++.+ ..+...+.++++++++.
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l------~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGALLKIF------PLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEE------CCCSSEEEEEECCTTCS
T ss_pred CEEEEEEEECCEEEEEEEECCCCCEEEec------CCCCceEEEEecCCCCC
Confidence 78888877776 5677786 78777766 33345577788888876
No 272
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.27 E-value=8e-10 Score=88.69 Aligned_cols=209 Identities=13% Similarity=0.106 Sum_probs=119.4
Q ss_pred CCCcceEEcCCCcEEEEeCCC---C--eEEEeccccccccceeeE--EecCceeeEEcCCCcEEEEcC-C----------
Q psy13998 56 TWPRGIAVGPDNSIVVADSSN---H--RVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDNSIVVADS-S---------- 117 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~---~--~v~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~~~-~---------- 117 (319)
..+..++|+|+|+.++..+.+ + .|.+ ++..++.... ....+..++|+|+|+.++... .
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~----~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWV----ADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEE----EETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEE----EECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 567789999999866554322 3 4666 6665544322 112267889999997444432 1
Q ss_pred ----------------CCeEEEEcCCCcEE-EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC---------CEEEEE
Q psy13998 118 ----------------NHRVQVFQSDGTFV-GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN---------HRVQIF 171 (319)
Q Consensus 118 ----------------~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~---------~~i~~~ 171 (319)
...|++|+..+... ..+.. . .+..++++|+| ++++...+ ..|..+
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~ 205 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIW 205 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEE-------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecC-------C-CcccccCCCCe-EEEEEecccccccccccccEEEe
Confidence 25788899544433 44421 1 45788999999 76665332 245556
Q ss_pred ecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEE-EEeCC-------CCeEEEEeCCCCEEEEeCCCCCCcc
Q psy13998 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSN-------NHRVQIFDVNGRVITSFGSEGSEEG 243 (319)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~ 243 (319)
+ .+. .. .+.. . .... .++|+|+.+ +.... ...|++|+ .++.. .+. ..
T Consensus 206 d-~~~-------~~-~l~~------~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~-~l~-----~~ 260 (347)
T 2gop_A 206 E-DGK-------EE-KMFE------K-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVM-GIL-----DE 260 (347)
T ss_dssp E-TTE-------EE-EEEE------E-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEE-ESS-----TT
T ss_pred C-CCc-------eE-Eecc------C-ccee--eECCCCCEEEEEEccccCCccccceEEEEC-CCceE-ecc-----cc
Confidence 6 332 11 1100 0 1112 237888644 44322 35799999 55543 331 12
Q ss_pred cccCcce-EEEcCCCcEEEEeCCCCEEEEEcC-CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998 244 QLKFPRG-VAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314 (319)
Q Consensus 244 ~~~~~~~-i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~ 314 (319)
+...+.. ++++ +| +++++..++.+.+| . +|+..... .+...+.++++++ .++++.+.++
T Consensus 261 ~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-------~~~~~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 261 VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-------KGRHWIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-------CSSSEEEEEEESS--SEEEEEECSS
T ss_pred CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-------cCCCeEEeeeeeC--cEEEEEcCCC
Confidence 2223444 7888 88 88888888877777 5 46554433 2244678889998 5555444443
No 273
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=1.7e-08 Score=90.01 Aligned_cols=231 Identities=8% Similarity=0.054 Sum_probs=147.7
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE--------ecCceeeEEcCCCcEEEEcCCCCeEEEEcCC
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA--------FTWPRGIAVGPDNSIVVADSSNHRVQVFQSD 127 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~ 127 (319)
..+.++..+++|++|+.... +-|.. ++..+.. ..+ ...+.++..+++|++|+... .+.+.+++..
T Consensus 363 ~~v~~i~~d~~g~lWigt~~-~Gl~~----~~~~~~~-~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~-~~Gl~~~~~~ 435 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDG-GGINV----FENGKRV-AIYNKENRELLSNSVLCSLKDSEGNLWFGTY-LGNISYYNTR 435 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBS-SCEEE----EETTEEE-EECC-----CCCSBEEEEEECTTSCEEEEET-TEEEEEECSS
T ss_pred cceEEEEEcCCCCEEEEeCC-CcEEE----EECCCCe-EEEccCCCCCCCcceEEEEECCCCCEEEEec-cCCEEEEcCC
Confidence 45788999999999987543 44667 5654322 111 12467788888899998653 4579999965
Q ss_pred CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998 128 GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207 (319)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (319)
......+... ......+.++..+++|++|+... +.+.+++..+. ++....... ........+.++..+
T Consensus 436 ~~~~~~~~~~---~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~------~~~~~~~~~-~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 436 LKKFQIIELE---KNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASK------KVIHHYDTS-NSQLLENFVRSIAQD 503 (781)
T ss_dssp SCEEEECCST---TTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSS------SCCEEECTT-TSSCSCSCEEEEEEC
T ss_pred CCcEEEeccC---CCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCC------eEEecccCc-ccccccceeEEEEEc
Confidence 4444444321 11235678889999999999765 56888987653 221111110 001112457789999
Q ss_pred CCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCC
Q psy13998 208 NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGS 287 (319)
Q Consensus 208 ~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~ 287 (319)
++|++|++.... .+.+|+++......+.... .-....+.++..+++|++|++.. +|-|..|++....+..+.....
T Consensus 504 ~~g~lWigt~~~-Gl~~~~~~~~~~~~~~~~~--~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~g 579 (781)
T 3v9f_A 504 SEGRFWIGTFGG-GVGIYTPDMQLVRKFNQYE--GFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEG 579 (781)
T ss_dssp TTCCEEEEESSS-CEEEECTTCCEEEEECTTT--TCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGT
T ss_pred CCCCEEEEEcCC-CEEEEeCCCCeEEEccCCC--CCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCC
Confidence 999999887644 4888998776666664211 11223567899999999999887 5544999976544444432110
Q ss_pred CCCCCCCcceEEEccCCcEEEEeC
Q psy13998 288 GDGEFKGLEGVAVMSNGNILVCDR 311 (319)
Q Consensus 288 ~~~~~~~~~~l~~~~~g~~~v~~~ 311 (319)
-....+.++..+++|+++++..
T Consensus 580 --l~~~~i~~i~~d~~g~lW~~t~ 601 (781)
T 3v9f_A 580 --LPNTHIRAISEDKNGNIWASTN 601 (781)
T ss_dssp --CSCCCCCEEEECSSSCEEEECS
T ss_pred --CCCceEEEEEECCCCCEEEEcC
Confidence 1123478899999999998863
No 274
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=99.27 E-value=8.2e-10 Score=88.60 Aligned_cols=219 Identities=12% Similarity=0.181 Sum_probs=126.1
Q ss_pred EecCceeeEEcCCCc-EEEEcCCCCeEEEEcCCCcEEEEecCCC-ccCCCCCCceeEEEeC----CCeEEEEeCC-----
Q psy13998 96 AFTWPRGIAVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMG-NKAGQLEHPHYIAVSN----TNRVIVSDSN----- 164 (319)
Q Consensus 96 ~~~~~~~l~~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~----~g~~~~~~~~----- 164 (319)
.+..|.+|+++|+|+ +|++.. .++|++++.+++....+.... ........+.+|+++| ++.+|++...
T Consensus 16 ~l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 16 KLDHPWALAFLPDNHGMLITLR-GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp EESSEEEEEECSTTCCEEEEET-TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCCcEEEEEcCCCCEEEEEeC-CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 577999999999999 999876 589999987765432221110 0011234678999999 4888988653
Q ss_pred --CCEEEEEecCCc--eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-------------CCeEEEEeC
Q psy13998 165 --NHRVQIFDVNGR--VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------------NHRVQIFDV 227 (319)
Q Consensus 165 --~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-------------~~~i~~~~~ 227 (319)
...|..++.+.. .+.....++..+.. .......+.+|+++|+|.+|++... .+.|.++++
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~---~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPK---LSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSC---CBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCC---CCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 346777766432 11100011111110 0112334678999999999998643 357999998
Q ss_pred CCCEEEEeCC---CCCC----cccccCcceEEEcC-CCcEEEEeCCCC---EEEEEcCCCce---EEeec----------
Q psy13998 228 NGRVITSFGS---EGSE----EGQLKFPRGVAVDD-QGYISVGDSGNN---RIQIFTPDGQF---LRAFG---------- 283 (319)
Q Consensus 228 ~~~~~~~~~~---~~~~----~~~~~~~~~i~~~~-~g~~~v~~~~~~---~i~~~~~~g~~---~~~~~---------- 283 (319)
+|.....-.- .... ...+..|.++++++ +|++|+++.... .|.+....+.. ....+
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 7752100000 0000 11234689999999 789999987532 45444322211 00000
Q ss_pred -----ccCCCC-----CCCCCcceEEEcc-------CCcEEEEeCCCCeEEe
Q psy13998 284 -----CWGSGD-----GEFKGLEGVAVMS-------NGNILVCDRENHRIQV 318 (319)
Q Consensus 284 -----~~~~~~-----~~~~~~~~l~~~~-------~g~~~v~~~~~~~i~v 318 (319)
...... .+...|.++++.. +|++|+++...++|..
T Consensus 252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~ 303 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIV 303 (353)
T ss_dssp CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEE
T ss_pred ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEE
Confidence 000000 1123578888863 5789999988887753
No 275
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.26 E-value=2.9e-08 Score=88.73 Aligned_cols=233 Identities=11% Similarity=0.109 Sum_probs=146.9
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEE------------ecCceeeEEcCCCc-EEEEcCCCCeEE
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA------------FTWPRGIAVGPDNS-IVVADSSNHRVQ 122 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~g~-~~~~~~~~~~i~ 122 (319)
..+.++..+++|++|+... ++-|.. ++..+...... ...+.+++.+++|+ +|+... ++.+.
T Consensus 357 ~~V~~i~~d~~g~lWiGt~-~~Gl~~----~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~-~~Gl~ 430 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWIGTN-DGGLNL----YNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH-AGGLS 430 (795)
T ss_dssp SSEEEEEECTTSCEEEEES-SSCEEE----ECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET-TTEEE
T ss_pred CeeEEEEECCCCCEEEEEC-CCCeEE----EcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC-cCcee
Confidence 4578899999999998654 445777 66543322110 12456788888999 888653 45699
Q ss_pred EEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccC-CcCCCCCCc
Q psy13998 123 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-NKAGQLEHP 201 (319)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 201 (319)
+++........+..... ......+.++..+++|++|+... +.+.+|+..+..+. .+.... ........+
T Consensus 431 ~~d~~~~~~~~~~~~~~-~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~-------~~~~~~~~~~~~~~~i 500 (795)
T 4a2l_A 431 ILHRNSGQVENFNQRNS-QLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFT-------TIEKEKDGTPVVSKQI 500 (795)
T ss_dssp EEETTTCCEEEECTTTS-CCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEE-------ECCBCTTCCBCCCCCE
T ss_pred EEeCCCCcEEEeecCCC-CcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEE-------EccccccccccCCceE
Confidence 99965444444432111 12234678899999999999875 45888988754322 111100 000112456
Q ss_pred eeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCC-CCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEE
Q psy13998 202 HYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSE-GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280 (319)
Q Consensus 202 ~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~ 280 (319)
.++..+++|++|++.. +.+++|+...... .+... .........+.+|..+++|++|++... .|..|++......
T Consensus 501 ~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 501 TTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEKDKQIK 575 (795)
T ss_dssp EEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCCCCcEE
Confidence 7888999999999876 4688999755444 44211 111112345778999999999998764 6899997665555
Q ss_pred eecccCCCCCCCCCcceEEEccCCcEEEEeC
Q psy13998 281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCDR 311 (319)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~ 311 (319)
.+..... -....+.++..+++|+++++..
T Consensus 576 ~~~~~~g--l~~~~i~~i~~d~~g~lWi~t~ 604 (795)
T 4a2l_A 576 RYNTTNG--LPNNVVYGILEDSFGRLWLSTN 604 (795)
T ss_dssp EECGGGT--CSCSCEEEEEECTTSCEEEEET
T ss_pred EeCCCCC--CchhheEEEEECCCCCEEEEcC
Confidence 5532111 1123578899999999998874
No 276
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=7e-09 Score=92.48 Aligned_cols=237 Identities=12% Similarity=0.016 Sum_probs=147.4
Q ss_pred CCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-------cCceeeEEcCCCcEEEEcCCCCeEEEEcCCC
Q psy13998 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDG 128 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~ 128 (319)
..+.++..+++|++|+... ++.+.. ++..+.. +..+ ..+.++..+++|++|++.. +.+.+|+...
T Consensus 407 ~~v~~i~~d~~g~lWigt~-~~Gl~~----~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~ 478 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWFGTY-LGNISY----YNTRLKK-FQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLAS 478 (781)
T ss_dssp SBEEEEEECTTSCEEEEET-TEEEEE----ECSSSCE-EEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSS
T ss_pred cceEEEEECCCCCEEEEec-cCCEEE----EcCCCCc-EEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCC
Confidence 4678888898999998654 456777 6665433 2222 2467888888999999875 5799999544
Q ss_pred cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998 129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN 208 (319)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (319)
.....+............+.++..+++|++|+.....+ +.+|+.++..+ ..+.... .-....+.++..++
T Consensus 479 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-------~~~~~~~--~l~~~~i~~i~~d~ 548 (781)
T 3v9f_A 479 KKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-------RKFNQYE--GFCSNTINQIYRSS 548 (781)
T ss_dssp SSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-------EEECTTT--TCSCSCEEEEEECT
T ss_pred CeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-------EEccCCC--CCCCCeeEEEEECC
Confidence 32222211111011135678899999999999765444 77788765322 1221110 01123567888899
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCC
Q psy13998 209 TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG 288 (319)
Q Consensus 209 ~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~ 288 (319)
+|++|++.. .|.+..|++.......+..... -....+.++..+++|++|+++. +.|..|+++...+..+......
T Consensus 549 ~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~g--l~~~~i~~i~~d~~g~lW~~t~--~Gl~~~~~~~~~~~~~~~~dGl 623 (781)
T 3v9f_A 549 KGQMWLATG-EGLVCFPSARNFDYQVFQRKEG--LPNTHIRAISEDKNGNIWASTN--TGISCYITSKKCFYTYDHSNNI 623 (781)
T ss_dssp TSCEEEEET-TEEEEESCTTTCCCEEECGGGT--CSCCCCCEEEECSSSCEEEECS--SCEEEEETTTTEEEEECGGGTC
T ss_pred CCCEEEEEC-CCceEEECCCCCcEEEccccCC--CCCceEEEEEECCCCCEEEEcC--CceEEEECCCCceEEecccCCc
Confidence 999999876 5554999976554455432110 1123467899999999999863 4589999877666666432211
Q ss_pred CCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998 289 DGEFKGLEGVAVMSNGNILVCDRENHRI 316 (319)
Q Consensus 289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i 316 (319)
........++..+++|++|+.+. +|-+
T Consensus 624 ~~~~f~~~~~~~~~~G~l~~g~~-~Gl~ 650 (781)
T 3v9f_A 624 PQGSFISGCVTKDHNGLIYFGSI-NGLC 650 (781)
T ss_dssp CSSCEEEEEEEECTTSCEEEEET-TEEE
T ss_pred cccccccCceEECCCCEEEEECC-CceE
Confidence 11222245677889999888765 3443
No 277
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.24 E-value=2.7e-08 Score=88.86 Aligned_cols=234 Identities=10% Similarity=0.084 Sum_probs=148.0
Q ss_pred CCCcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeEE--------ecCceeeEEcCCCcEEEEcCCCCeEEEEcC
Q psy13998 56 TWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLA--------FTWPRGIAVGPDNSIVVADSSNHRVQVFQS 126 (319)
Q Consensus 56 ~~~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~ 126 (319)
..+.++..+++|+ +|+... ++-+.+ ++..++..... ...+.++..+++|++|++.. +.+.+|++
T Consensus 406 ~~v~~i~~d~~g~~lWigt~-~~Gl~~----~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~ 478 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTH-AGGLSI----LHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNP 478 (795)
T ss_dssp SCEEEEEEETTTTEEEEEET-TTEEEE----EETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEET
T ss_pred ccEEEEEEcCCCCEEEEEeC-cCceeE----EeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeC
Confidence 4577888899999 888654 445777 67654332221 12467888888999999875 46899996
Q ss_pred CCcEEEEecCCCcc-CCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc-CCcCCCCCCceeE
Q psy13998 127 DGTFVGKFGSMGNK-AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM-GNKAGQLEHPHYI 204 (319)
Q Consensus 127 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 204 (319)
.......+...... ......+.++..+++|++|+... +.+.+|+..+.. + .+... .........+.++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~------~--~~~~~~~~~~l~~~~i~~i 548 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD------I--QKASILPVSNVTKLFTNCI 548 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE------E--EECCCSCSCGGGGSCEEEE
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe------E--EEecCCCCCCCCCCeeEEE
Confidence 65544444321000 11224678899999999999876 458888876432 2 11100 0001112356788
Q ss_pred EEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecc
Q psy13998 205 AVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGC 284 (319)
Q Consensus 205 ~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~ 284 (319)
..+++|+++++... .+.+|++.......+..... -....+.++..+++|++|+++. +.|..|+++...+..+..
T Consensus 549 ~~d~~g~lWigT~~--Gl~~~d~~~~~~~~~~~~~g--l~~~~i~~i~~d~~g~lWi~t~--~Gl~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 549 YEASNGIIWVGTRE--GFYCFNEKDKQIKRYNTTNG--LPNNVVYGILEDSFGRLWLSTN--RGISCFNPETEKFRNFTE 622 (795)
T ss_dssp EECTTSCEEEEESS--CEEEEETTTTEEEEECGGGT--CSCSCEEEEEECTTSCEEEEET--TEEEEEETTTTEEEEECG
T ss_pred EECCCCCEEEEeCC--CceeECCCCCcEEEeCCCCC--CchhheEEEEECCCCCEEEEcC--CceEEEcCCCCcEEEcCC
Confidence 88999999988764 68999987666666532111 0123467889999999999984 679999987666666633
Q ss_pred cCCCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998 285 WGSGDGEFKGLEGVAVMSNGNILVCDRE 312 (319)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~g~~~v~~~~ 312 (319)
............++..+++|++|+.+..
T Consensus 623 ~dGl~~~~f~~~~~~~~~~G~l~~g~~~ 650 (795)
T 4a2l_A 623 SDGLQSNQFNTASYCRTSVGQMYFGGIN 650 (795)
T ss_dssp GGTCSCSCEEEEEEEECTTSCEEEEETT
T ss_pred cCCCccccCccCceeECCCCeEEEecCC
Confidence 2111111112356778899998887653
No 278
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=2.5e-08 Score=80.72 Aligned_cols=197 Identities=11% Similarity=0.112 Sum_probs=123.2
Q ss_pred CCCcceEEcCCCcEEEEeCCC------CeEEEeccccccccceeeEEec-------CceeeEEcCCCcEEEEcC------
Q psy13998 56 TWPRGIAVGPDNSIVVADSSN------HRVQVCFPHFDLKTNCVFLAFT-------WPRGIAVGPDNSIVVADS------ 116 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~g~~~~~~~------ 116 (319)
..|+.+...|+| ++++..++ +.|.+ +|..+.+.+..+. .+.++.++|+++.+++..
T Consensus 138 s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v----lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~ 212 (462)
T 2ece_A 138 SRLHTVHCGPDA-IYISALGNEEGEGPGGILM----LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNT 212 (462)
T ss_dssp EEEEEEEECSSC-EEEEEEEETTSCSCCEEEE----ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHH
T ss_pred CcccceeECCCe-EEEEcCCCcCCCCCCeEEE----EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccc
Confidence 478888999999 88887665 78999 8888777776554 134477799998777763
Q ss_pred -------------CCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEE--eCCCeE-EEEeC-----CCCEEEEEecC
Q psy13998 117 -------------SNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAV--SNTNRV-IVSDS-----NNHRVQIFDVN 174 (319)
Q Consensus 117 -------------~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~g~~-~~~~~-----~~~~i~~~~~~ 174 (319)
..++|.+|| .+++.+.++.... ....|..+.+ +|++++ |+++. .+++|.+|..+
T Consensus 213 ~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~----~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d 288 (462)
T 2ece_A 213 IEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE----ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE 288 (462)
T ss_dssp HTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT----TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred cccccchhhhhhccCCEEEEEECCCCcEeeEEecCC----CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence 368999999 4566666664321 1134667766 888855 55555 66788776554
Q ss_pred CceeeecCceeeeecc---cCCcC------C-CCCCceeEEEcCCCc-EEEEeCCCCeEEEEeCC----CCEEEEeCCCC
Q psy13998 175 GRVFQSDGTFVGKFGS---MGNKA------G-QLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVN----GRVITSFGSEG 239 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~---~~~~~------~-~~~~~~~~~~~~~g~-~~v~~~~~~~i~~~~~~----~~~~~~~~~~~ 239 (319)
....... +.+. ... ..... . ....|.+|.++++|+ +|++....+.|.+|+.+ .+.+..+...+
T Consensus 289 ~g~~~~~-~vId-i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG 366 (462)
T 2ece_A 289 DGKWNAE-KVIE-IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG 366 (462)
T ss_dssp TTEEEEE-EEEE-ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT
T ss_pred CCceeEE-EEEe-CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC
Confidence 3211100 1110 100 00000 0 024588999999984 77888889999999963 23444442221
Q ss_pred CC--------cccccCcceEEEcCCCc-EEEEe
Q psy13998 240 SE--------EGQLKFPRGVAVDDQGY-ISVGD 263 (319)
Q Consensus 240 ~~--------~~~~~~~~~i~~~~~g~-~~v~~ 263 (319)
.. ......|..++++|||+ +|++.
T Consensus 367 ~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 367 IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 10 00112589999999996 56665
No 279
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.17 E-value=7.1e-09 Score=86.74 Aligned_cols=187 Identities=11% Similarity=0.080 Sum_probs=115.7
Q ss_pred CCc-EEEEcCCCCeEEEEcCC-CcEEEEecCCCccCCCCCCceeEEE-e-CCCeEEEEeC------------------CC
Q psy13998 108 DNS-IVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAV-S-NTNRVIVSDS------------------NN 165 (319)
Q Consensus 108 ~g~-~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~g~~~~~~~------------------~~ 165 (319)
||+ +|+++..+.+|.+.|.+ .+..+.+..+ ....|+++++ . |++++++++. .+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-----~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-----NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-----SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-----CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence 554 78888889999999954 4555534221 1246789998 4 7776655542 23
Q ss_pred CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-CC--------------CeEEEEeCC--
Q psy13998 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN--------------HRVQIFDVN-- 228 (319)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~--------------~~i~~~~~~-- 228 (319)
+.+.++|.++. +...+.... ..|.+++++++|++.++.+ .. ..|.+++..
T Consensus 175 ~~vtvID~~t~------~v~~qI~Vg-------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~ 241 (595)
T 1fwx_A 175 NVFTAVDADKW------EVAWQVLVS-------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI 241 (595)
T ss_dssp EEEEEEETTTT------EEEEEEEES-------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred ceEEEEECCCC------eEEEEEEeC-------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence 56778887743 444444221 1467789999986554443 32 224444311
Q ss_pred ------CCE-----EEEeCCCC---CC----cccccCcceEEEcCCCc-EEEEeCCCCEEEEEcCCCc------------
Q psy13998 229 ------GRV-----ITSFGSEG---SE----EGQLKFPRGVAVDDQGY-ISVGDSGNNRIQIFTPDGQ------------ 277 (319)
Q Consensus 229 ------~~~-----~~~~~~~~---~~----~~~~~~~~~i~~~~~g~-~~v~~~~~~~i~~~~~~g~------------ 277 (319)
|+. +..+.... .. ......|.++.++|||+ +|+++..+++|.++|.+..
T Consensus 242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred eEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 110 11111110 00 01124688999999996 6777778999999995421
Q ss_pred -eEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 278 -FLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
....+ .....|..++|+++|..|++...++.|.+|
T Consensus 322 ~v~~~v-------~vG~gP~h~aF~~dG~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 322 AVVAEP-------ELGLGPLHTAFDGRGNAYTSLFLDSQVVKW 357 (595)
T ss_dssp GEEECC-------BCCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred ceEEEc-------CCCCCcceEEECCCCeEEEEEecCCcEEEE
Confidence 22222 223469999999999999999999999877
No 280
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=99.13 E-value=1.5e-07 Score=74.95 Aligned_cols=245 Identities=12% Similarity=0.072 Sum_probs=153.7
Q ss_pred CCCcceEE-cCCCcEEEEeCC-----CCeEEEecccccccc-------ceee-E---------EecCceeeEEcCCCcEE
Q psy13998 56 TWPRGIAV-GPDNSIVVADSS-----NHRVQVCFPHFDLKT-------NCVF-L---------AFTWPRGIAVGPDNSIV 112 (319)
Q Consensus 56 ~~~~~v~~-~~~g~~~~~~~~-----~~~v~~~~~~~~~~~-------~~~~-~---------~~~~~~~l~~~~~g~~~ 112 (319)
..|.+|++ +.+|++|++-.. .-++.. .+..+ ...+ . .+..+..+.+++.+++|
T Consensus 26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~----v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLW 101 (381)
T 3q6k_A 26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAE----VDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLW 101 (381)
T ss_dssp CCCCEEEEETTTTEEEEECCTTSTTCSCSEEE----EEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEE
T ss_pred cceeeeeeecCCCcEEEEeCCCCCCCCcEEEE----EeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEE
Confidence 56889999 689999998643 124444 22210 1112 2 35577889999999999
Q ss_pred EEcCCC---------------CeEEEEc-CCC--cEEEEecCCCccCCCCCCceeEEEe-C-------CCeEEEEeCCCC
Q psy13998 113 VADSSN---------------HRVQVFQ-SDG--TFVGKFGSMGNKAGQLEHPHYIAVS-N-------TNRVIVSDSNNH 166 (319)
Q Consensus 113 ~~~~~~---------------~~i~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~-~-------~g~~~~~~~~~~ 166 (319)
+.+.+. -+|.+|| .++ ++++++..+............++++ . ++..|+++....
T Consensus 102 VLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~ 181 (381)
T 3q6k_A 102 VVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRG 181 (381)
T ss_dssp EEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTT
T ss_pred EEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCC
Confidence 997651 2688999 566 7888887654333333567889988 2 356799999999
Q ss_pred EEEEEecCCceeee--cCcee----eeecccCCcCCCCCCceeEEEcCC----C-cEEEEeCCCCeEEEEeC----CC--
Q psy13998 167 RVQIFDVNGRVFQS--DGTFV----GKFGSMGNKAGQLEHPHYIAVSNT----N-RVIVSDSNNHRVQIFDV----NG-- 229 (319)
Q Consensus 167 ~i~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----g-~~~v~~~~~~~i~~~~~----~~-- 229 (319)
.|.++|+....... ...+. ..+...+..........+|+++|+ + .+|+.......++.... +.
T Consensus 182 gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~ 261 (381)
T 3q6k_A 182 ALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGG 261 (381)
T ss_dssp EEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTC
T ss_pred cEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcch
Confidence 99999998643210 00000 000001111111246788999986 3 57777776667777652 11
Q ss_pred -CEEEEeCCCCCCcccccCcceEEEc-CCCcEEEEeCCCCEEEEEcCCC-ce----EEeecccCCCCCCCCCcceEEEcc
Q psy13998 230 -RVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDG-QF----LRAFGCWGSGDGEFKGLEGVAVMS 302 (319)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~~~~i~~~-~~g~~~v~~~~~~~i~~~~~~g-~~----~~~~~~~~~~~~~~~~~~~l~~~~ 302 (319)
..++.++..+ ......+++++ .+|.+|++....+.|..|+.++ .. ...+.. .....+|.++.+++
T Consensus 262 ~~~v~~~G~kg----~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~----d~~l~~pd~~~i~~ 333 (381)
T 3q6k_A 262 KLNPELLGNRG----KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT----SSRFVFGTDISVDS 333 (381)
T ss_dssp CCCCEEEEECC----TTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE----CTTCCSEEEEEECT
T ss_pred hhceEEeeecC----CCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE----CCCccccCeEEECC
Confidence 1222222110 01123456786 7899999999999999999877 22 233322 23677899999999
Q ss_pred CCcEEEEeCC
Q psy13998 303 NGNILVCDRE 312 (319)
Q Consensus 303 ~g~~~v~~~~ 312 (319)
+|.+|+....
T Consensus 334 ~g~Lwv~sn~ 343 (381)
T 3q6k_A 334 KGGLWFMSNG 343 (381)
T ss_dssp TSCEEEEECS
T ss_pred CCeEEEEECc
Confidence 9998887754
No 281
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.12 E-value=3.4e-09 Score=93.22 Aligned_cols=228 Identities=8% Similarity=-0.041 Sum_probs=128.4
Q ss_pred cccccCCCccchhcc-----ccceeeeecccCCCCC------cCCCC--cceEEcCCCcEEEEeCCCCe-----------
Q psy13998 23 GIGQVGTTPRSQYLQ-----KRRLQFKIGSRGSEPG------CFTWP--RGIAVGPDNSIVVADSSNHR----------- 78 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~------~~~~~--~~v~~~~~g~~~~~~~~~~~----------- 78 (319)
.+..+.+||++++++ .++....+..++...+ ++..+ .+++|+|||+.++..+.+..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~ 201 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGY 201 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence 477888999999988 4443334433333222 33333 68999999997776665544
Q ss_pred --EEEeccccccccce----eeEEe----cCceeeEEcCCCcEEEEcCCCC----eEEEEcC-CCcEEEEecCCCccCCC
Q psy13998 79 --VQVCFPHFDLKTNC----VFLAF----TWPRGIAVGPDNSIVVADSSNH----RVQVFQS-DGTFVGKFGSMGNKAGQ 143 (319)
Q Consensus 79 --v~~~~~~~~~~~~~----~~~~~----~~~~~l~~~~~g~~~~~~~~~~----~i~~~~~-~~~~~~~~~~~~~~~~~ 143 (319)
|++ |++.+.. .+... ....++.++|+|+.++....++ .|++++. +++...... +
T Consensus 202 ~~v~~----~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-------~ 270 (695)
T 2bkl_A 202 TTIRY----HTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-------G 270 (695)
T ss_dssp CEEEE----EETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE-------C
T ss_pred CEEEE----EECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec-------C
Confidence 999 7776544 22222 2446889999997555443333 7888874 444333221 1
Q ss_pred CCCceeEEEeCCCeEEEEeC---CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC
Q psy13998 144 LEHPHYIAVSNTNRVIVSDS---NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220 (319)
Q Consensus 144 ~~~~~~l~~~~~g~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~ 220 (319)
........+ ++|.+|+... .++.|.+|++++.... .....+. ........+++++ ++.++++...++
T Consensus 271 ~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~-----~~~~~~l~~~~~~-~~~lv~~~~~dg 340 (695)
T 2bkl_A 271 VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA---SWKEIVP-----EDSSASLLSVSIV-GGHLSLEYLKDA 340 (695)
T ss_dssp SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG---GCEEEEC-----CCSSCEEEEEEEE-TTEEEEEEEETT
T ss_pred CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc---CCeEEec-----CCCCCeEEEEEEE-CCEEEEEEEECC
Confidence 122234444 4555666554 3578999998642100 0111110 0001234556776 667888777666
Q ss_pred eE--EEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEE-Ee---CCCCEEEEEcCCC
Q psy13998 221 RV--QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISV-GD---SGNNRIQIFTPDG 276 (319)
Q Consensus 221 ~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v-~~---~~~~~i~~~~~~g 276 (319)
.. ++++.+|.....+... ....+.++.+++++..++ +. ...+.|+.||..+
T Consensus 341 ~~~l~~~~~~g~~~~~l~~~-----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 341 TSEVRVATLKGKPVRTVQLP-----GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp EEEEEEEETTCCEEEECCCS-----SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEEEEeCCCCeeEEecCC-----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 54 4556667766555211 122345667788875433 32 2346899999643
No 282
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=99.08 E-value=1.5e-08 Score=83.82 Aligned_cols=159 Identities=12% Similarity=0.211 Sum_probs=101.3
Q ss_pred EecCceeeEEcCCCcEEEEcCCCCeEEEEcC-CCcEEEEecCCCcc--CCCCCCceeEEEeC----CCeEEEEeCC----
Q psy13998 96 AFTWPRGIAVGPDNSIVVADSSNHRVQVFQS-DGTFVGKFGSMGNK--AGQLEHPHYIAVSN----TNRVIVSDSN---- 164 (319)
Q Consensus 96 ~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~l~~~~----~g~~~~~~~~---- 164 (319)
.+..|.+|++.|+|++|++....++|++++. +++........... ......+.+|+++| ++.+|++.+.
T Consensus 25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3668999999999999999877678999984 45543222111100 11235667999999 6788888753
Q ss_pred --------CCEEEEEecCCc--eeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC----------------
Q psy13998 165 --------NHRVQIFDVNGR--VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---------------- 218 (319)
Q Consensus 165 --------~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~---------------- 218 (319)
...|..++.+.. .+.....++..+. ......+..|+++++|+||++...
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-----~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~ 179 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-----SSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQ 179 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-----CCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTT
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-----CCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccc
Confidence 346777765421 1111111122221 112345789999999999998542
Q ss_pred ----------------CCeEEEEeCCCCE-----------EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC
Q psy13998 219 ----------------NHRVQIFDVNGRV-----------ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG 265 (319)
Q Consensus 219 ----------------~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~ 265 (319)
.+.|.+++++|.. ...+ ...+..|.+++|+++|++|++...
T Consensus 180 ~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~------a~G~RNp~gla~dp~G~L~~~d~g 247 (454)
T 1cru_A 180 HTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIY------TLGHRNPQGLAFTPNGKLLQSEQG 247 (454)
T ss_dssp CCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEE------EBCCSEEEEEEECTTSCEEEEEEC
T ss_pred cccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEE------EECCCCcceEEECCCCCEEEEecC
Confidence 3678888887751 1111 123456899999999999999853
No 283
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.07 E-value=2.2e-08 Score=88.35 Aligned_cols=230 Identities=13% Similarity=0.076 Sum_probs=131.2
Q ss_pred cccccCCCccchhcccccee-----eeecccCCCCCcC-------CCCcceEEcCCCcEEEEeCCCCe------------
Q psy13998 23 GIGQVGTTPRSQYLQKRRLQ-----FKIGSRGSEPGCF-------TWPRGIAVGPDNSIVVADSSNHR------------ 78 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~-------~~~~~v~~~~~g~~~~~~~~~~~------------ 78 (319)
.+..+.|||++++++..... ..+..++...+.. ..+.+++|+|||+.++..+.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence 46778899999987743321 2444444443332 12578999999996665544433
Q ss_pred ----EEEeccccccccce----eeEEec----CceeeEEcCCCcEEEEcCC-----CCeEEEEcCC-------Cc-EEEE
Q psy13998 79 ----VQVCFPHFDLKTNC----VFLAFT----WPRGIAVGPDNSIVVADSS-----NHRVQVFQSD-------GT-FVGK 133 (319)
Q Consensus 79 ----v~~~~~~~~~~~~~----~~~~~~----~~~~l~~~~~g~~~~~~~~-----~~~i~~~~~~-------~~-~~~~ 133 (319)
|++ |++.+.. .+.... ...++.++|+|+.++.... +..|+++|.+ +. ....
T Consensus 206 ~~~~v~~----~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 206 LHQKLYY----HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCEEEE----EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred CCCEEEE----EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 888 7776543 221211 2458899999985544322 5689999954 32 2333
Q ss_pred ecCCCccCCCCCCceeEEEeCCC-eEEEEeCC---CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998 134 FGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSN---NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209 (319)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (319)
+.. +...... .++++| .+++.... ...|.+|++.+.... ....... ........++++.++
T Consensus 282 l~~------~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~-----~~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 282 LID------NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVLVP-----EHEKDVLEWVACVRS 346 (710)
T ss_dssp EEC------SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEEC-----CCSSCEEEEEEEETT
T ss_pred eeC------CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cceeccC-----CCCCCeEEEEEEEcC
Confidence 321 1112222 466766 45555443 347999998742100 0011110 001123456777777
Q ss_pred CcEEEEeCCCC--eEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC---CCCEEEEEcCC-Cc
Q psy13998 210 NRVIVSDSNNH--RVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS---GNNRIQIFTPD-GQ 277 (319)
Q Consensus 210 g~~~v~~~~~~--~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~---~~~~i~~~~~~-g~ 277 (319)
+.++++...++ .|++|+. +|+.+..+. .+...+.++.+++++. ++++.+ ...+|+.||.. |+
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGALLKIFP------LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEEC------CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCEEEEEEEECCCCCEEEecC------CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 78888776665 5778887 677666662 2233456778888875 444322 35789999953 44
No 284
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.98 E-value=3.2e-08 Score=79.57 Aligned_cols=174 Identities=11% Similarity=0.029 Sum_probs=112.2
Q ss_pred CCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccce-------------eeEEecCceeeEEcCCCcEEEEcCCCCeE
Q psy13998 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC-------------VFLAFTWPRGIAVGPDNSIVVADSSNHRV 121 (319)
Q Consensus 55 ~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~g~~~~~~~~~~~i 121 (319)
+..+..+++++...++++++.+ .+.+ |+.+... ....+..+..|+| ++++++++ .++.|
T Consensus 37 ~~~~nlLais~~~gll~a~~~~-~l~v----~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~~~~l 108 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGS-KAVV----GELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-TRNAL 108 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETT-EEEE----EEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-ESSEE
T ss_pred cccccEEEEcCCCCEEEEeCCC-EEEE----EEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-cCCcE
Confidence 4578999999999988888876 5666 4432111 2224455889999 77766666 67899
Q ss_pred EEEcCC-CcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998 122 QVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH 200 (319)
Q Consensus 122 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (319)
.+||.. -....... .+...+.++.+.+. + +++...+|.+.+|++.... ... ....
T Consensus 109 ~v~dv~sl~~~~~~~------~~~~~v~~i~~~~p-~-~av~~~dG~L~v~dl~~~~------~~~----------~~~~ 164 (388)
T 1xip_A 109 YSLDLEELSEFRTVT------SFEKPVFQLKNVNN-T-LVILNSVNDLSALDLRTKS------TKQ----------LAQN 164 (388)
T ss_dssp EEEESSSTTCEEEEE------ECSSCEEEEEECSS-E-EEEEETTSEEEEEETTTCC------EEE----------EEES
T ss_pred EEEEchhhhccCccc------eeecceeeEEecCC-C-EEEEECCCCEEEEEccCCc------ccc----------ccCC
Confidence 999942 22221111 11123455554443 3 6666789999999997432 111 1135
Q ss_pred ceeEEEcCCCcEEEEeCCCCeEEEEeCCCCE---EEEeCCCCCCc---ccccCcceEEEcCCCcEEEE
Q psy13998 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV---ITSFGSEGSEE---GQLKFPRGVAVDDQGYISVG 262 (319)
Q Consensus 201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~i~~~~~g~~~v~ 262 (319)
+.+++|+|+| ++.+..++.+++|++++.. ...+..+.... ++...+.+|.|.+++.++++
T Consensus 165 Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 165 VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 7899999999 4567778999999987766 44553322111 23456889999999887776
No 285
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.95 E-value=1.4e-07 Score=83.55 Aligned_cols=218 Identities=13% Similarity=0.118 Sum_probs=119.9
Q ss_pred CCcceEEcCCCcEEEEeCCC-----CeEEEeccccccccceeeEE-ecCc--eeeEEcCCCc-EEEEcCC----------
Q psy13998 57 WPRGIAVGPDNSIVVADSSN-----HRVQVCFPHFDLKTNCVFLA-FTWP--RGIAVGPDNS-IVVADSS---------- 117 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~-~~~~--~~l~~~~~g~-~~~~~~~---------- 117 (319)
.+.+++|+|||++++....+ ..|++ |++.+++.... .... .+++|+|| + ++++...
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v----~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKF----VGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEE----EETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEE----EECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 45678999999976654322 46999 88887665442 2222 57899999 6 4444322
Q ss_pred ---CCeEEEEcCC-Cc--EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-----CCEEEEEecCCceeeecCceee
Q psy13998 118 ---NHRVQVFQSD-GT--FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-----NHRVQIFDVNGRVFQSDGTFVG 186 (319)
Q Consensus 118 ---~~~i~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~ 186 (319)
...|++|+.. +. ....+.. ..+.....++.++|||+.++.... ...|.++|+.+... +...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~----~~~~ 310 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFAT----PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI----GPVT 310 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECC----TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE----CCCE
T ss_pred CCCCCEEEEEECCCCchhCEEEecc----CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC----cccE
Confidence 2248888843 22 1222211 111123578899999976554332 35889888764200 1011
Q ss_pred eecccCCcCCCCCCceeEEEcCCCc-EEEEeC---CCCeEEEEeCCC--CEEEEeCCCCCCcccccCcceEEEcCCCcEE
Q psy13998 187 KFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDS---NNHRVQIFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQGYIS 260 (319)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~v~~~---~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~ 260 (319)
.+.. ........ ++++|. +++... .++.|++++.++ .....+.. .....+.++.++ ++.++
T Consensus 311 ~l~~------~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-----~~~~~l~~~~~~-~~~lv 377 (741)
T 1yr2_A 311 ALIP------DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-----ESKDNLESVGIA-GNRLF 377 (741)
T ss_dssp EEEC------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-----CCSSEEEEEEEE-BTEEE
T ss_pred EecC------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-----CCCCeEEEEEEE-CCEEE
Confidence 1110 11111222 236664 444433 256799999765 23333321 111124566776 55788
Q ss_pred EEeCCCCEE--EEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998 261 VGDSGNNRI--QIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 261 v~~~~~~~i--~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 305 (319)
++...++.. .+++.+|+..+.+.. .....+.++++++++.
T Consensus 378 ~~~~~dg~~~l~~~~~~g~~~~~l~~-----~~~~~v~~~~~s~d~~ 419 (741)
T 1yr2_A 378 ASYIHDAKSQVLAFDLDGKPAGAVSL-----PGIGSASGLSGRPGDR 419 (741)
T ss_dssp EEEEETTEEEEEEEETTSCEEEECBC-----SSSCEEEEEECCBTCS
T ss_pred EEEEECCEEEEEEEeCCCCceeeccC-----CCCeEEEEeecCCCCC
Confidence 887777654 455566776666521 1234567788888876
No 286
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.94 E-value=7e-07 Score=78.03 Aligned_cols=163 Identities=12% Similarity=0.132 Sum_probs=93.9
Q ss_pred ceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCc------ee----eEEcCCCcEEEEcCC-----CCeEEEE
Q psy13998 60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP------RG----IAVGPDNSIVVADSS-----NHRVQVF 124 (319)
Q Consensus 60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~----l~~~~~g~~~~~~~~-----~~~i~~~ 124 (319)
++++. ++++| .++.++.|.. +|..+++....+... .. ..+. ++.+|+.... ++.|+.|
T Consensus 123 ~~a~~-~~~v~-v~~~dg~l~a----lD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~ 195 (677)
T 1kb0_A 123 GVALW-KGKVY-VGAWDGRLIA----LDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAY 195 (677)
T ss_dssp CCEEE-TTEEE-EECTTSEEEE----EETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEE
T ss_pred CceEE-CCEEE-EEcCCCEEEE----EECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEE
Confidence 45553 34444 4567889999 888877766544322 11 1222 4566665432 6899999
Q ss_pred c-CCCcEEEEecCCCccC--------------------------CCCCCceeEEEeCCCeEEEEeCCCC-----------
Q psy13998 125 Q-SDGTFVGKFGSMGNKA--------------------------GQLEHPHYIAVSNTNRVIVSDSNNH----------- 166 (319)
Q Consensus 125 ~-~~~~~~~~~~~~~~~~--------------------------~~~~~~~~l~~~~~g~~~~~~~~~~----------- 166 (319)
| .+|+.+..+....... +.......+++++++.+++....++
T Consensus 196 D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~ 275 (677)
T 1kb0_A 196 DAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPK 275 (677)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred ECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCcc
Confidence 9 7899888775432110 0001113578888665544444432
Q ss_pred --------EEEEEecCCceeeecCceeeeecccCCc---CCCCCCceeEEEcCCC---cEEEEeCCCCeEEEEeC-CCCE
Q psy13998 167 --------RVQIFDVNGRVFQSDGTFVGKFGSMGNK---AGQLEHPHYIAVSNTN---RVIVSDSNNHRVQIFDV-NGRV 231 (319)
Q Consensus 167 --------~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g---~~~v~~~~~~~i~~~~~-~~~~ 231 (319)
.|..+|.++ |+.+..+...... ......|..+....+| ..++....++.++++|. +|+.
T Consensus 276 ~gd~~~~~sv~AlD~~T------G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~ 349 (677)
T 1kb0_A 276 GGDNLYLASIVALDPDT------GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF 349 (677)
T ss_dssp CCCCTTTTEEEEECTTT------CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCeeeEEEEEEECCC------CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 588888773 4555544321110 0112334434443466 67888888999999995 6887
Q ss_pred EEEe
Q psy13998 232 ITSF 235 (319)
Q Consensus 232 ~~~~ 235 (319)
+..+
T Consensus 350 l~~~ 353 (677)
T 1kb0_A 350 ISAK 353 (677)
T ss_dssp EEEE
T ss_pred eccc
Confidence 7655
No 287
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.87 E-value=4e-07 Score=80.01 Aligned_cols=219 Identities=14% Similarity=0.161 Sum_probs=116.8
Q ss_pred CcCCCCcceEEcCCCcEEEE-----eCCCCeEEEeccccccccceeeE-EecCc--eeeEEcCCCc-EEEEcCC------
Q psy13998 53 GCFTWPRGIAVGPDNSIVVA-----DSSNHRVQVCFPHFDLKTNCVFL-AFTWP--RGIAVGPDNS-IVVADSS------ 117 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~g~-~~~~~~~------ 117 (319)
++...+.+++++|||++++- ++....|++ +++.+++... .+... .+++|+ ||+ ++++...
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v----~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHL----MDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEE----EETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEE----EECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccc
Confidence 34456778899999996652 222357889 8988776543 33333 578899 886 4444322
Q ss_pred ------CCeEEEEcCCC-c--EEEEecCCCccCC-CCCCceeEEEeCCCeEEEE-eC---CCCEEEEEecCCceeeecCc
Q psy13998 118 ------NHRVQVFQSDG-T--FVGKFGSMGNKAG-QLEHPHYIAVSNTNRVIVS-DS---NNHRVQIFDVNGRVFQSDGT 183 (319)
Q Consensus 118 ------~~~i~~~~~~~-~--~~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~-~~---~~~~i~~~~~~~~~~~~~~~ 183 (319)
...|++|+... . ....+.. .. +.....++.++++|+.++. .. ..+.++++++++. .+.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~----~~~ 272 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGA----IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE----NAP 272 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESC----SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST----TCC
T ss_pred ccccCCCcEEEEEECCCCcccceEEEec----CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC----CCc
Confidence 23588887432 1 1222221 11 1223467889999976543 22 2358999987642 111
Q ss_pred eeeeecccCCcCCCCCCceeEEEcCC-CcEEEEeCC---CCeEEEEeCCCCE---EEEeCCCCCCcccccCcceEEEcCC
Q psy13998 184 FVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSN---NHRVQIFDVNGRV---ITSFGSEGSEEGQLKFPRGVAVDDQ 256 (319)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~---~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~ 256 (319)
+. .+. ......... ++++ +.+++.... ++.|++++.++.. .+.+. .+..... .++++
T Consensus 273 ~~-~l~------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~------~~~~~~~--~~s~~ 336 (693)
T 3iuj_A 273 LL-TVQ------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI------PERQQVL--TVHSG 336 (693)
T ss_dssp CE-EEE------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE------CCCSSCE--EEEEE
T ss_pred eE-EEe------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe------cCCCCEE--EEEEE
Confidence 11 111 011111122 4444 456665543 4689999975422 12331 1111122 67777
Q ss_pred CcEEEEeC-CCC--EEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCc
Q psy13998 257 GYISVGDS-GNN--RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN 305 (319)
Q Consensus 257 g~~~v~~~-~~~--~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 305 (319)
++.++... .++ +|++|+.+|...+.+.. .....+..+.+++++.
T Consensus 337 g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~-----p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 337 SGYLFAEYMVDATARVEQFDYEGKRVREVAL-----PGLGSVSGFNGKHDDP 383 (693)
T ss_dssp TTEEEEEEEETTEEEEEEECTTSCEEEEECC-----SSSSEEEECCCCTTCS
T ss_pred CCEEEEEEEECCeeEEEEEECCCCeeEEeec-----CCCceEEeeecCCCCC
Confidence 76544443 333 78999988877666532 1122344555556655
No 288
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=98.87 E-value=3e-06 Score=67.55 Aligned_cols=199 Identities=13% Similarity=0.166 Sum_probs=125.7
Q ss_pred CcCCCCcceEEcCCCcEEEEeCCC---------------CeEEEeccccccccc--eeeEEec----------CceeeEE
Q psy13998 53 GCFTWPRGIAVGPDNSIVVADSSN---------------HRVQVCFPHFDLKTN--CVFLAFT----------WPRGIAV 105 (319)
Q Consensus 53 ~~~~~~~~v~~~~~g~~~~~~~~~---------------~~v~~~~~~~~~~~~--~~~~~~~----------~~~~l~~ 105 (319)
.++..|.++.+++.|++|+.+++. -+|.+ ||+.++ +.++.+. ....+++
T Consensus 84 ~~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~----~DL~t~~~~li~~y~~p~~~~~~~S~l~di~V 159 (381)
T 3q6k_A 84 KELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVA----YDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAV 159 (381)
T ss_dssp CSSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEE----EESSSTTCCEEEEEECCGGGCCCGGGEEEEEE
T ss_pred cceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEE----EECCCCCceeEEEEECCHHhcccCCccceEEE
Confidence 458899999999999999998651 25677 999998 7776443 2366777
Q ss_pred c---C-----CCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccC--------CC----CCCceeEEEeCC----C-eEE
Q psy13998 106 G---P-----DNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKA--------GQ----LEHPHYIAVSNT----N-RVI 159 (319)
Q Consensus 106 ~---~-----~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~--------~~----~~~~~~l~~~~~----g-~~~ 159 (319)
+ + ++-.|+++.....|.++| .+++..+.....-... +. ...+.+|+++|+ + .+|
T Consensus 160 D~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LY 239 (381)
T 3q6k_A 160 DVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAY 239 (381)
T ss_dssp EESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEE
T ss_pred ecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEE
Confidence 7 2 235899999899999999 4554443331100000 00 136678888885 3 567
Q ss_pred EEeCCCCEEEEEecCCceeeec--CceeeeecccCCcCCCCCCceeEEEc-CCCcEEEEeCCCCeEEEEeCCC-CE----
Q psy13998 160 VSDSNNHRVQIFDVNGRVFQSD--GTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNG-RV---- 231 (319)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~i~~~~~~~-~~---- 231 (319)
+.......++....+ .+... ...+..++.. +......+++++ .+|.+|++....+.|..|++++ ..
T Consensus 240 f~plss~~ly~V~T~--~L~~~~~~~~v~~~G~k----g~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n 313 (381)
T 3q6k_A 240 YLAGSAIKVYSVNTK--ELKQKGGKLNPELLGNR----GKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKN 313 (381)
T ss_dssp EEESSCSEEEEEEHH--HHSSTTCCCCCEEEEEC----CTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGG
T ss_pred EEECCCCcEEEEEHH--HhhCcchhhceEEeeec----CCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCc
Confidence 766665566554321 11000 0111111111 111223457786 7899999999999999999876 21
Q ss_pred EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC
Q psy13998 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG 265 (319)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~ 265 (319)
...+.. ...+.+|.++.++++|.+|+....
T Consensus 314 ~~~l~~----d~~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 314 TDVVYT----SSRFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp EEEEEE----CTTCCSEEEEEECTTSCEEEEECS
T ss_pred eEEEEE----CCCccccCeEEECCCCeEEEEECc
Confidence 222211 236778999999999999998754
No 289
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.85 E-value=9.2e-08 Score=76.95 Aligned_cols=173 Identities=12% Similarity=0.044 Sum_probs=110.2
Q ss_pred CceeeEEcCCCcEEEEcCCCCeEEEEcCC-Cc-----------EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC
Q psy13998 99 WPRGIAVGPDNSIVVADSSNHRVQVFQSD-GT-----------FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 166 (319)
Q Consensus 99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~ 166 (319)
..+.+++++...++++++.+ .+++|+.+ .. ..... .... +..++| ++++++++ .++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-------~lp~-V~~l~f--d~~~L~v~-~~~ 106 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-------EIPD-VIFVCF--HGDQVLVS-TRN 106 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-------ECTT-EEEEEE--ETTEEEEE-ESS
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-------eCCC-eeEEEE--CCCEEEEE-cCC
Confidence 56889999998888887766 56668621 11 10111 1113 789999 67776666 778
Q ss_pred EEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccc
Q psy13998 167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQL 245 (319)
Q Consensus 167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 245 (319)
.|.+||..... .+.....+ ......+...+. + +++...+|.|++|+.. +... .. .
T Consensus 107 ~l~v~dv~sl~---~~~~~~~~---------~~~v~~i~~~~p-~-~av~~~dG~L~v~dl~~~~~~-~~---------~ 162 (388)
T 1xip_A 107 ALYSLDLEELS---EFRTVTSF---------EKPVFQLKNVNN-T-LVILNSVNDLSALDLRTKSTK-QL---------A 162 (388)
T ss_dssp EEEEEESSSTT---CEEEEEEC---------SSCEEEEEECSS-E-EEEEETTSEEEEEETTTCCEE-EE---------E
T ss_pred cEEEEEchhhh---ccCcccee---------ecceeeEEecCC-C-EEEEECCCCEEEEEccCCccc-cc---------c
Confidence 99999987532 11111111 112334444432 2 5556778999999975 4433 22 2
Q ss_pred cCcceEEEcCCCcEEEEeCCCCEEEEEcCCCce---EEeecccCCC---CCCCCCcceEEEccCCcEEEE
Q psy13998 246 KFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQF---LRAFGCWGSG---DGEFKGLEGVAVMSNGNILVC 309 (319)
Q Consensus 246 ~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~---~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~v~ 309 (319)
..+.+++|+|+| ++.+..++.+++|++++.. .+.+..+... .++...+.+|.|.+++.++++
T Consensus 163 ~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 163 QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 368899999999 5667788999999987766 4455322111 124567999999999886665
No 290
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.83 E-value=5e-06 Score=72.85 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=49.4
Q ss_pred CeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcce
Q psy13998 220 HRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEG 297 (319)
Q Consensus 220 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 297 (319)
+.|+.||+ +|+.+.++.. +.. ..+-.+...+.+++.++.++.|+.|| .+|+.+..+... ......-
T Consensus 455 g~l~A~D~~tG~~~W~~~~------~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~-----~~~~~~p 522 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPY------VTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA-----SGVMAAP 522 (689)
T ss_dssp EEEEEEETTTTEEEEEEEE------SSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-----SCCCSCC
T ss_pred eeEEEEECCCCCeEeEccC------CCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC-----CCcccCc
Confidence 67999996 5777666521 111 12223444556667778999999999 679999877432 1112233
Q ss_pred EEEccCCcEEEE
Q psy13998 298 VAVMSNGNILVC 309 (319)
Q Consensus 298 l~~~~~g~~~v~ 309 (319)
+.+..+|+.|++
T Consensus 523 ~ty~~~G~qyv~ 534 (689)
T 1yiq_A 523 VTYSVDGEQYVT 534 (689)
T ss_dssp EEEEETTEEEEE
T ss_pred eEEEECCEEEEE
Confidence 677789986655
No 291
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.83 E-value=4e-06 Score=73.28 Aligned_cols=190 Identities=11% Similarity=0.123 Sum_probs=108.1
Q ss_pred eeEEcCCCcEEEEcCCCC-------------------eEEEEc-CCCcEEEEecCCCccC---CCCCCceeEEEeCCC--
Q psy13998 102 GIAVGPDNSIVVADSSNH-------------------RVQVFQ-SDGTFVGKFGSMGNKA---GQLEHPHYIAVSNTN-- 156 (319)
Q Consensus 102 ~l~~~~~g~~~~~~~~~~-------------------~i~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~g-- 156 (319)
.+++++++.+++.+..++ .|..+| .+|+.+..+....... .....|.-+....+|
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP 326 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence 467888776555444442 599999 6789888775432100 011233333333467
Q ss_pred -eEEEEeCCCCEEEEEecCCceeeecCceeeeecccC-----------C----------------cCCC--CCCceeEEE
Q psy13998 157 -RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMG-----------N----------------KAGQ--LEHPHYIAV 206 (319)
Q Consensus 157 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----------~----------------~~~~--~~~~~~~~~ 206 (319)
.+++....++.++++|..+. +++....... . .+.. ...-.++++
T Consensus 327 ~~~l~~~~~~G~l~~lD~~tG------~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~ 400 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTNG------KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF 400 (677)
T ss_dssp EEEEEECCTTSEEEEEETTTC------CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred eeEEEEECCCCEEEEEECCCC------CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceE
Confidence 67888888999999998642 3322221000 0 0000 001135789
Q ss_pred cCCCcEEEEeCC-------------------------------------------CCeEEEEeC-CCCEEEEeCCCCCCc
Q psy13998 207 SNTNRVIVSDSN-------------------------------------------NHRVQIFDV-NGRVITSFGSEGSEE 242 (319)
Q Consensus 207 ~~~g~~~v~~~~-------------------------------------------~~~i~~~~~-~~~~~~~~~~~~~~~ 242 (319)
+|++.++++... .+.|..||. +|+.+.++...
T Consensus 401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---- 476 (677)
T 1kb0_A 401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---- 476 (677)
T ss_dssp ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----
T ss_pred cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC----
Confidence 987655444211 267999996 57776665211
Q ss_pred ccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEE
Q psy13998 243 GQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVC 309 (319)
Q Consensus 243 ~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~ 309 (319)
..+.+..+..++.+++.++.++.+++|| .+|+.+..+... ......-+.+..+|+.|++
T Consensus 477 ---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~-----~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 477 ---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG-----TGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp ---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-----SCCCSCCEEEEETTEEEEE
T ss_pred ---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC-----CCcccCCEEEEeCCEEEEE
Confidence 1123334445555556668899999999 579998887432 1112234566788885554
No 292
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.81 E-value=2.8e-07 Score=81.69 Aligned_cols=232 Identities=15% Similarity=0.154 Sum_probs=125.7
Q ss_pred cccccCCCccchhcccccee-----eeecccCCCCCcC-----CC--CcceEEcCCCcEEEEeCCCC-------------
Q psy13998 23 GIGQVGTTPRSQYLQKRRLQ-----FKIGSRGSEPGCF-----TW--PRGIAVGPDNSIVVADSSNH------------- 77 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~-----~~--~~~v~~~~~g~~~~~~~~~~------------- 77 (319)
.+..+.|||++++++..... ..+..++...+.. .. ..+++|+|| +.++..+.+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 56778899999987755432 3454444444432 22 268899999 7554443322
Q ss_pred -eEEEeccccccccce----eeEEec----CceeeEEcCCCcEEEEcCC-----CCeEEEEcCCCc--E-EEEecCCCcc
Q psy13998 78 -RVQVCFPHFDLKTNC----VFLAFT----WPRGIAVGPDNSIVVADSS-----NHRVQVFQSDGT--F-VGKFGSMGNK 140 (319)
Q Consensus 78 -~v~~~~~~~~~~~~~----~~~~~~----~~~~l~~~~~g~~~~~~~~-----~~~i~~~~~~~~--~-~~~~~~~~~~ 140 (319)
.|++ |++.+.. .+.... ...++.++|+|+.++.... ...|+++|.++. . ...+..
T Consensus 243 ~~v~~----~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~---- 314 (741)
T 1yr2_A 243 QTVWL----HRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP---- 314 (741)
T ss_dssp CEEEE----EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC----
T ss_pred CEEEE----EECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC----
Confidence 4778 7765443 222211 2467899999975444332 358999994332 2 233321
Q ss_pred CCCCCCceeEEEeCCC-eEEEEeC---CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe
Q psy13998 141 AGQLEHPHYIAVSNTN-RVIVSDS---NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 216 (319)
Q Consensus 141 ~~~~~~~~~l~~~~~g-~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~ 216 (319)
+....... +.++| .+++... .+..|.++++++.. +.....+ ........+++++ ++.++++.
T Consensus 315 --~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~l~------~~~~~~l~~~~~~-~~~lv~~~ 380 (741)
T 1yr2_A 315 --DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST----PRFDTVV------PESKDNLESVGIA-GNRLFASY 380 (741)
T ss_dssp --SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS----CEEEEEE------CCCSSEEEEEEEE-BTEEEEEE
T ss_pred --CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc----cccEEEe------cCCCCeEEEEEEE-CCEEEEEE
Confidence 11122333 23655 4444433 24679999887420 0111111 1111224456666 56777776
Q ss_pred CCCCe--EEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC---CCCEEEEEcCCCceEEee
Q psy13998 217 SNNHR--VQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS---GNNRIQIFTPDGQFLRAF 282 (319)
Q Consensus 217 ~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~---~~~~i~~~~~~g~~~~~~ 282 (319)
..++. |++++.++.....+... ....+.++.+++++. ++++.+ ..++|+.||..+.....+
T Consensus 381 ~~dg~~~l~~~~~~g~~~~~l~~~-----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 381 IHDAKSQVLAFDLDGKPAGAVSLP-----GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp EETTEEEEEEEETTSCEEEECBCS-----SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred EECCEEEEEEEeCCCCceeeccCC-----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 66654 55666677766655211 123456778888875 444332 347899999654334443
No 293
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.81 E-value=3.9e-06 Score=73.49 Aligned_cols=162 Identities=15% Similarity=0.217 Sum_probs=89.3
Q ss_pred eEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCc------eeeEEcC---CCcEEEEcC-----CCCeEEEEc-
Q psy13998 61 IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP------RGIAVGP---DNSIVVADS-----SNHRVQVFQ- 125 (319)
Q Consensus 61 v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~l~~~~---~g~~~~~~~-----~~~~i~~~~- 125 (319)
+++. ++++ +.++.++.|.. +|..+++........ ..+...| ++.+|+... .++.|+.||
T Consensus 117 ~~~~-~g~v-~v~~~dg~l~A----lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~ 190 (689)
T 1yiq_A 117 VAVW-KGKV-YVGVLDGRLEA----IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDA 190 (689)
T ss_dssp CEEE-TTEE-EEECTTSEEEE----EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred cEEE-CCEE-EEEccCCEEEE----EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEEC
Confidence 4443 4444 44567899999 888877765543321 1111122 566666543 267999999
Q ss_pred CCCcEEEEecCC-CccC------------------------CCCCCceeEEEeCCCeEEEEeCCCC--------------
Q psy13998 126 SDGTFVGKFGSM-GNKA------------------------GQLEHPHYIAVSNTNRVIVSDSNNH-------------- 166 (319)
Q Consensus 126 ~~~~~~~~~~~~-~~~~------------------------~~~~~~~~l~~~~~g~~~~~~~~~~-------------- 166 (319)
.+|+.+..+... +... +.-.....+++++++.+++.+..++
T Consensus 191 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd 270 (689)
T 1yiq_A 191 ETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGD 270 (689)
T ss_dssp TTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSC
T ss_pred CCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCC
Confidence 789988877531 1100 0001113578888665555555554
Q ss_pred -----EEEEEecCCceeeecCceeeeecccCCcCCC--C-CCceeEEEcCCCc---EEEEeCCCCeEEEEeC-CCCEEEE
Q psy13998 167 -----RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ--L-EHPHYIAVSNTNR---VIVSDSNNHRVQIFDV-NGRVITS 234 (319)
Q Consensus 167 -----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~g~---~~v~~~~~~~i~~~~~-~~~~~~~ 234 (319)
.|..+|.++ |+.+..+......... . ..+....+..+|+ .++....++.++++|. +|+.+..
T Consensus 271 ~~y~~~v~AlD~~T------G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 271 NLFLSSIVAVNADT------GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp CTTTTEEEEEETTT------CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred ceeeeeEEEEEccC------CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 488888873 4555544321110000 1 1111112222454 6777888999999995 6777643
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.75 E-value=2.9e-06 Score=66.49 Aligned_cols=186 Identities=14% Similarity=0.366 Sum_probs=112.5
Q ss_pred CCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC----C----eEEEEeCC--CCEEEEEecCCce
Q psy13998 108 DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT----N----RVIVSDSN--NHRVQIFDVNGRV 177 (319)
Q Consensus 108 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----g----~~~~~~~~--~~~i~~~~~~~~~ 177 (319)
...++++....+.+.+||.+|+.+..+.. ..++.+.+-++ | ..++++.. +++|.+|+++..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~- 109 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK- 109 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECC--------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccC--------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-
Confidence 34566666667789999999999988731 34566665552 2 24667777 799999966421
Q ss_pred eeecCceeeeecccC-CcCCCCCCceeEEE--cCC-Cc-EEEEeCCCCeEEEEeC----CC----CEEEEeCCCCCCccc
Q psy13998 178 FQSDGTFVGKFGSMG-NKAGQLEHPHYIAV--SNT-NR-VIVSDSNNHRVQIFDV----NG----RVITSFGSEGSEEGQ 244 (319)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~-g~-~~v~~~~~~~i~~~~~----~~----~~~~~~~~~~~~~~~ 244 (319)
. ..+....... ........|.++++ ++. +. +.++...++.+..|.. +| +.++++..
T Consensus 110 ---~-~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l------- 178 (355)
T 3amr_A 110 ---N-GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM------- 178 (355)
T ss_dssp ---T-CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-------
T ss_pred ---C-CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-------
Confidence 0 1122221100 00122367889998 764 54 3455566789888774 22 34555532
Q ss_pred ccCcceEEEcCC-CcEEEEeCCCCEEEEEcC--C----CceEEeecccCCCCCCC-CCcceEEEc--cCCc--EEEEeCC
Q psy13998 245 LKFPRGVAVDDQ-GYISVGDSGNNRIQIFTP--D----GQFLRAFGCWGSGDGEF-KGLEGVAVM--SNGN--ILVCDRE 312 (319)
Q Consensus 245 ~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~~--~----g~~~~~~~~~~~~~~~~-~~~~~l~~~--~~g~--~~v~~~~ 312 (319)
...+.++++++. |.+|++.-. ..|..|+. + ++.+..+. .+++ ..+.+|++. ++|+ +++++-.
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~-----~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRAD-----GRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBS-----SSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred CCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEec-----CCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 135788999976 677777665 55999983 3 33444432 1223 368999984 4444 6777767
Q ss_pred CCeEEeC
Q psy13998 313 NHRIQVF 319 (319)
Q Consensus 313 ~~~i~v~ 319 (319)
+++..+|
T Consensus 253 ~~s~~Vy 259 (355)
T 3amr_A 253 NSSYAIY 259 (355)
T ss_dssp GTEEEEE
T ss_pred CCEEEEE
Confidence 7776664
No 295
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.73 E-value=3.4e-05 Score=67.38 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=68.5
Q ss_pred CcceEEcC-CCcEEEEeCCCC-----------eEEEeccccccccceeeE--Eec-----CceeeEEcCCCcEEEEcCC-
Q psy13998 58 PRGIAVGP-DNSIVVADSSNH-----------RVQVCFPHFDLKTNCVFL--AFT-----WPRGIAVGPDNSIVVADSS- 117 (319)
Q Consensus 58 ~~~v~~~~-~g~~~~~~~~~~-----------~v~~~~~~~~~~~~~~~~--~~~-----~~~~l~~~~~g~~~~~~~~- 117 (319)
+.+.++.+ +|++|+.++.+. .+.+ ||..++.... .+. ...++++..++++|+.++.
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~----yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS----WDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEE----ECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEE----EeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 45677777 899988875322 5777 7766544221 221 1234677788999999874
Q ss_pred CCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CC-----CEEEEEecCCc
Q psy13998 118 NHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN-----HRVQIFDVNGR 176 (319)
Q Consensus 118 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~-----~~i~~~~~~~~ 176 (319)
...+.+||+....-...... . ....-.++++.++|++|+.++ .+ ..+.+||+...
T Consensus 264 ~~~v~~yd~~t~~W~~~~~~---~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPDM---Q-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp TTCEEEEEGGGTEEEECCCC---S-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred CCceEEecCcCCceeECCCC---C-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 45799999544333332211 1 111224566667899999987 33 56889998754
No 296
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.71 E-value=8.3e-09 Score=83.46 Aligned_cols=182 Identities=8% Similarity=0.064 Sum_probs=89.8
Q ss_pred CcEEEEeCCCCeEEEeccccccccceeeEEec--CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCC
Q psy13998 67 NSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT--WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQ 143 (319)
Q Consensus 67 g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~ 143 (319)
+..+++++.++.|+. ||..+++....+. .+.+..+..++.++++++.++.|+.|| .+|+.+..+....... .
T Consensus 9 ~~~v~~gs~dg~v~a----~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~-~ 83 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHA----VSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL-V 83 (369)
T ss_dssp TTEEEEEETTSEEEE----EETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH-H
T ss_pred CCEEEEEcCCCEEEE----EECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc-c
Confidence 455556677899999 8887776655443 233333445677888888899999999 4777665553210000 0
Q ss_pred CCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEE
Q psy13998 144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ 223 (319)
Q Consensus 144 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~ 223 (319)
...| ++..++. +++++.++.++.||..+ |+.+..+.... ....+|++..++++..++.|+
T Consensus 84 ~~sp---~~~~~~~-v~~g~~dg~v~a~D~~t------G~~~w~~~~~~----------~~~~~p~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 84 QASP---CRSSDGI-LYMGKKQDIWYVIDLLT------GEKQQTLSSAF----------ADSLSPSTSLLYLGRTEYTIT 143 (369)
T ss_dssp TTCS---CC------CCCCEEEEEEEEECCC--------------------------------------EEEEEEEEEEE
T ss_pred ccCc---eEecCCE-EEEEeCCCEEEEEECCC------CcEEEEecCCC----------cccccccCCEEEEEecCCEEE
Confidence 0111 1112333 44455678899998873 34433332110 122344555566666678999
Q ss_pred EEeC-CCCEEEEeCCCCCCcccccCcceEEEcCC----CcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998 224 IFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQ----GYISVGDSGNNRIQIFTP-DGQFLRAF 282 (319)
Q Consensus 224 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----g~~~v~~~~~~~i~~~~~-~g~~~~~~ 282 (319)
.||. +|+.+..+... . ....+++.+ +.+|+ ++.++.|+.||. +|+.+...
T Consensus 144 a~d~~tG~~~W~~~~~-----~---~~~~~~~~~~~~~~~v~~-~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 144 MYDTKTRELRWNATYF-----D---YAASLPEDDVDYKMSHFV-SNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp CCCSSSSSCCCEEEEE-----E---ECCBCCCCCTTCCCCEEE-EETSCEEEEECTTTCCEEEEE
T ss_pred EEECCCCCEEEeEecc-----c---ccCccccCCccccceEEE-ECCCCEEEEEECCCCcEEEEe
Confidence 9995 66655443110 0 112233332 45665 456799999995 78887765
No 297
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.70 E-value=2e-05 Score=70.14 Aligned_cols=235 Identities=12% Similarity=0.092 Sum_probs=133.5
Q ss_pred CCcceEEcCCCcEEEEeCCCCeEEEeccccccccc--eeeEE-----------ecCceeeEEcCCCcEEEEcCCCCeEEE
Q psy13998 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTN--CVFLA-----------FTWPRGIAVGPDNSIVVADSSNHRVQV 123 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~-----------~~~~~~l~~~~~g~~~~~~~~~~~i~~ 123 (319)
.+.++..+.+|++|+... +| +.. ++..+. ..... ...+.++..+++|++|++. ++.+.+
T Consensus 325 ~v~~i~~D~~g~lWiGt~-~G-l~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt--~~GL~~ 396 (758)
T 3ott_A 325 QFYSLFRDSKGFYWFGGA-NG-LIR----FTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT--DGSINR 396 (758)
T ss_dssp BEEEEEECTTCCEEEEET-TE-EEE----ESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE--TTEEEE
T ss_pred eEEEEEEcCCCCEEEeeC-Cc-cee----ecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe--CCcHhh
Confidence 467888899999999863 44 555 443321 11111 1235778888889999976 357999
Q ss_pred EcCCCcEEEEecCCCc-cCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCcee--eeecccCCcCCCCCC
Q psy13998 124 FQSDGTFVGKFGSMGN-KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFV--GKFGSMGNKAGQLEH 200 (319)
Q Consensus 124 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 200 (319)
|++.......+..... .......+.++..+++|++|+... .+.+.+++...........+. ..+..... -....
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~ 473 (758)
T 3ott_A 397 YDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTC-LGGIFVVDKHKLMQSTSGQYIAEQNYSVHNG--LSGMF 473 (758)
T ss_dssp EETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEES-SSCEEEEEHHHHHHCCSSEEECSEEECGGGT--CSCSC
T ss_pred cCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEEC-CCceEEEccccccccCCcceecccccccccc--cccce
Confidence 9965544444321110 001224567888888999998654 345777775421000001111 11111000 01124
Q ss_pred ceeEEEcCCCcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEE
Q psy13998 201 PHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280 (319)
Q Consensus 201 ~~~~~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~ 280 (319)
+.++..+++|++|+.++..+.+.++++.......+.... ......+.++..+.+|++|++.. +-|..|++......
T Consensus 474 i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~ 549 (758)
T 3ott_A 474 INQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADE--LTGEKSPNYLLCDEDGLLWVGFH--GGVMRINPKDESQQ 549 (758)
T ss_dssp EEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTT--SCGGGCEEEEEECTTSCEEEEET--TEEEEECC--CCCC
T ss_pred eeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCC--cCCCcccceEEECCCCCEEEEec--CceEEEecCCCceE
Confidence 677888999999984333456899998766555552211 11124567889999999999874 46999997554433
Q ss_pred eecccCCCCCCCCCcceEEEccCCcEEEEe
Q psy13998 281 AFGCWGSGDGEFKGLEGVAVMSNGNILVCD 310 (319)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~ 310 (319)
.+... .-....+.++..+ +|+++++.
T Consensus 550 ~~~~~---gl~~~~i~~i~~~-~g~lWi~t 575 (758)
T 3ott_A 550 SISFG---SFSNNEILSMTCV-KNSIWVST 575 (758)
T ss_dssp BCCCC---C---CCEEEEEEE-TTEEEEEE
T ss_pred Eeccc---CCCccceEEEEEC-CCCEEEEC
Confidence 33110 0112346677664 77888776
No 298
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=98.67 E-value=4.4e-05 Score=63.18 Aligned_cols=243 Identities=14% Similarity=0.089 Sum_probs=125.0
Q ss_pred cCCCCcceEEcCCCc--EEEEeCCCCeEEEeccccccccc---eeeEE-------------ecCceeeEEcCC----CcE
Q psy13998 54 CFTWPRGIAVGPDNS--IVVADSSNHRVQVCFPHFDLKTN---CVFLA-------------FTWPRGIAVGPD----NSI 111 (319)
Q Consensus 54 ~~~~~~~v~~~~~g~--~~~~~~~~~~v~~~~~~~~~~~~---~~~~~-------------~~~~~~l~~~~~----g~~ 111 (319)
.+..|++|++.|+|. +||+.. .+.|++ ++.... ..+.. ...+.+|+++|+ +.+
T Consensus 12 gL~~P~~~a~~pdG~~rl~V~er-~G~i~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~l 86 (463)
T 2wg3_C 12 GLRQPVGALHSGDGSQRLFILEK-EGYVKI----LTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKL 86 (463)
T ss_dssp EESSEEEEECCSSSSCCEEEEET-TTEEEE----ECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEE
T ss_pred CCCCceEEEECCCCCeEEEEEeC-CceEEE----EeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEE
Confidence 378999999999985 888875 689999 543211 11111 124678999996 677
Q ss_pred EEEcCC--C----------CeEEEEcCC----C-------cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC---
Q psy13998 112 VVADSS--N----------HRVQVFQSD----G-------TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--- 165 (319)
Q Consensus 112 ~~~~~~--~----------~~i~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~--- 165 (319)
|++-+. + .+|..|..+ . +.+..+.. ....+....|+|.|||.+|++.+..
T Consensus 87 Yv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~----~~~~H~g~~l~fgpDG~LYv~~Gd~~~~ 162 (463)
T 2wg3_C 87 YVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE----LHRKHLGGQLLFGPDGFLYIILGDGMIT 162 (463)
T ss_dssp EEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE----SSSSSCEEEEEECTTSCEEEEECCTTCC
T ss_pred EEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC----CCCcccCCcEeECCCCcEEEEeCCCCCC
Confidence 776432 1 256666522 1 12222211 1223456789999999999986532
Q ss_pred --------------CEEEEEecCCce-----eeecC-ceeeeeccc-CCcCCCCCCceeEEEcCC-----Cc--EEEEeC
Q psy13998 166 --------------HRVQIFDVNGRV-----FQSDG-TFVGKFGSM-GNKAGQLEHPHYIAVSNT-----NR--VIVSDS 217 (319)
Q Consensus 166 --------------~~i~~~~~~~~~-----~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----g~--~~v~~~ 217 (319)
++|..++.++.. ..+.+ .+....... ..-..-+..|.+++|++. |+ ++.++.
T Consensus 163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~ 242 (463)
T 2wg3_C 163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS 242 (463)
T ss_dssp HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence 456667766520 00000 000000000 000122457899999986 44 444543
Q ss_pred -CC----CeEEEEeCCC-----CEEEEeCCCCCCcccccCcceEEEcC-------CCcEEEEeCCCCEEEEEcCCCc--e
Q psy13998 218 -NN----HRVQIFDVNG-----RVITSFGSEGSEEGQLKFPRGVAVDD-------QGYISVGDSGNNRIQIFTPDGQ--F 278 (319)
Q Consensus 218 -~~----~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~-------~g~~~v~~~~~~~i~~~~~~g~--~ 278 (319)
.. ..|......+ ..+..+. ......|.++.|-. .|.+|++... ++|..+..+.. .
T Consensus 243 ~G~~~~~~ei~~i~~G~~yG~~~P~~~~~-----~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~~~ 316 (463)
T 2wg3_C 243 NGKNRSSARILQIIKGKDYESEPSLLEFK-----PFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVTKQ 316 (463)
T ss_dssp ------CEEEEEEC----CCSCCCCEECC-----C----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-----C
T ss_pred CCCCCCCCeEeeeccCCCCCCCCCeEEee-----CCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCCCCce
Confidence 11 1222221110 1111211 00013567777743 2457777765 67777763321 1
Q ss_pred --EEee--cccC-CCCCCCCCcceEEEccCCcEEEEeC
Q psy13998 279 --LRAF--GCWG-SGDGEFKGLEGVAVMSNGNILVCDR 311 (319)
Q Consensus 279 --~~~~--~~~~-~~~~~~~~~~~l~~~~~g~~~v~~~ 311 (319)
...+ +... ........|.+++++|||.+|+++.
T Consensus 317 ~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 317 WQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred eeEEEeecCCcccccccccCcceEEEECCCCCEEEEec
Confidence 1111 1000 0012235789999999999999885
No 299
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.62 E-value=5.1e-06 Score=73.09 Aligned_cols=226 Identities=16% Similarity=0.138 Sum_probs=120.2
Q ss_pred cccccCCCccchhcc-----ccceeeeecccCCCCCc-----CCC--CcceEEcCCCcEEEEeCCC-------------C
Q psy13998 23 GIGQVGTTPRSQYLQ-----KRRLQFKIGSRGSEPGC-----FTW--PRGIAVGPDNSIVVADSSN-------------H 77 (319)
Q Consensus 23 ~i~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~-----~~~--~~~v~~~~~g~~~~~~~~~-------------~ 77 (319)
.+..+.+||++++++ .++....+..++...|. +.. ..+++|+ ||+.++..+.+ .
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~ 208 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH 208 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence 466778999999877 34434455555444443 222 3678999 99854444333 3
Q ss_pred eEEEeccccccccce----eeEEecC-----ceeeEEcCCCcEE-EEcC---CCCeEEEEcCCCc--EEEEecCCCccCC
Q psy13998 78 RVQVCFPHFDLKTNC----VFLAFTW-----PRGIAVGPDNSIV-VADS---SNHRVQVFQSDGT--FVGKFGSMGNKAG 142 (319)
Q Consensus 78 ~v~~~~~~~~~~~~~----~~~~~~~-----~~~l~~~~~g~~~-~~~~---~~~~i~~~~~~~~--~~~~~~~~~~~~~ 142 (319)
.|++ |++.+.. .+.+... ..++.++|+|+.+ ++.. ....|++++.++. ....+..
T Consensus 209 ~v~~----~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~------ 278 (693)
T 3iuj_A 209 KVYF----HRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG------ 278 (693)
T ss_dssp EEEE----EETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC------
T ss_pred EEEE----EECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC------
Confidence 4888 7665433 2222222 3578899999854 3322 2358999984322 2223321
Q ss_pred CCCCceeEEEeC-CCeEEEEeCC---CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEE-EeC
Q psy13998 143 QLEHPHYIAVSN-TNRVIVSDSN---NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV-SDS 217 (319)
Q Consensus 143 ~~~~~~~l~~~~-~g~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-~~~ 217 (319)
+....... +++ .+.+|+.... ...|..+++++.... .. ..+. . +..... .++++++.++ +..
T Consensus 279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~---~~-~~l~-----~-~~~~~~--~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA---HW-RDLI-----P-ERQQVL--TVHSGSGYLFAEYM 345 (693)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GC-EEEE-----C-CCSSCE--EEEEETTEEEEEEE
T ss_pred CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cc-EEEe-----c-CCCCEE--EEEEECCEEEEEEE
Confidence 11122222 444 4566666543 368888888752100 00 1110 1 111112 6666665444 433
Q ss_pred CCC--eEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCc-EEEEeC---CCCEEEEEcCCCc
Q psy13998 218 NNH--RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGY-ISVGDS---GNNRIQIFTPDGQ 277 (319)
Q Consensus 218 ~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-~~v~~~---~~~~i~~~~~~g~ 277 (319)
.++ .|++|+.++.....+.... ......+.+++++. ++++.+ .-..|+.||..+.
T Consensus 346 ~~g~~~l~~~d~~g~~~~~l~~p~-----~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 346 VDATARVEQFDYEGKRVREVALPG-----LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp ETTEEEEEEECTTSCEEEEECCSS-----SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred ECCeeEEEEEECCCCeeEEeecCC-----CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 333 7899998887766653211 11233455566764 444433 2378999996443
No 300
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.61 E-value=0.00015 Score=62.15 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=46.7
Q ss_pred CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEE-EcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCc
Q psy13998 219 NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVA-VDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGL 295 (319)
Q Consensus 219 ~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~ 295 (319)
.+.|+.+|. +|+.+.++.... .+.+.. ...++.+|+ ++.++.|+.+| .+|+.+..+.... .. ..
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~-------~~~~~~~~t~gg~v~~-g~~dg~l~a~D~~tG~~lw~~~~~~---~~--~~ 509 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKF-------AAWGGTLYTKGGLVWY-ATLDGYLKALDNKDGKELWNFKMPS---GG--IG 509 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS-------CCCSBCEEETTTEEEE-ECTTSEEEEEETTTCCEEEEEECSS---CC--CS
T ss_pred CCeEEEEECCCCCEEEEecCCC-------CccceeEEECCCEEEE-EcCCCeEEEEECCCCCEEEEEeCCC---Cc--Ee
Confidence 478999995 677776652111 112222 223445555 67899999999 6899988774321 11 12
Q ss_pred ceEEEccCCcEEEEe
Q psy13998 296 EGVAVMSNGNILVCD 310 (319)
Q Consensus 296 ~~l~~~~~g~~~v~~ 310 (319)
..+.+..+|++|++.
T Consensus 510 ~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 510 SPMTYSFKGKQYIGS 524 (571)
T ss_dssp CCEEEEETTEEEEEE
T ss_pred eeEEEEECCEEEEEE
Confidence 224455788866654
No 301
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.59 E-value=0.00027 Score=62.94 Aligned_cols=237 Identities=8% Similarity=0.018 Sum_probs=133.2
Q ss_pred CcceEEcCCCc-EEEEeCCCCeEEEeccccccccceeeE--E--ecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCcEEE
Q psy13998 58 PRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--A--FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVG 132 (319)
Q Consensus 58 ~~~v~~~~~g~-~~~~~~~~~~v~~~~~~~~~~~~~~~~--~--~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~ 132 (319)
+.++..++++. +|+.. . +-+.. ++..+..... . -..+.++..+++|.+|++.. +.+.+++.......
T Consensus 193 i~~i~~d~~~~~lWigt-~-~Gl~~----~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~Gl~~~~~~~~~~~ 264 (758)
T 3ott_A 193 VNSLLEDTTRQCVWIGT-E-GYLFQ----YFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD--NGLYVYHNDTTPLQ 264 (758)
T ss_dssp EEEEEEETTTTEEEEEE-E-EEEEE----EETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET--TEEEEECCTTSCCE
T ss_pred eEEEEEECCCCEEEEEE-C-CCCeE----EcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC--CceeEEecCCCcEE
Confidence 56777777665 67754 2 45777 6665433211 1 12467788888999999863 46889996544333
Q ss_pred EecCCCc--cCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998 133 KFGSMGN--KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 210 (319)
Q Consensus 133 ~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (319)
.+..... .......+.++..+.+|.+|+... .| +.++..... + +......... ......+.++..+.+|
T Consensus 265 ~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~-~G-l~~~~~~~~-~----~~~~~~~~~~--~~~~~~v~~i~~D~~g 335 (758)
T 3ott_A 265 HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD-YG-ISLSRYNSA-L----QFIPISQITG--TGDGNQFYSLFRDSKG 335 (758)
T ss_dssp EECCCTTCTTSCSCSCEEEEEECTTCCEEEEES-SS-EEEECCCC--C----EEEEHHHHSC--SCCCCBEEEEEECTTC
T ss_pred EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC-Cc-ccccccCCc-e----eEEecccCCC--CCCCceEEEEEEcCCC
Confidence 3322111 011224578888899999999764 35 444432210 0 1110000000 0112346778888999
Q ss_pred cEEEEeCCCCeEEEEeCCC-C--EEEEeCCCC-CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccC
Q psy13998 211 RVIVSDSNNHRVQIFDVNG-R--VITSFGSEG-SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWG 286 (319)
Q Consensus 211 ~~~v~~~~~~~i~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~ 286 (319)
.+|+... + -+..++... . ....+.... ...-....+.++..+++|++|++. ++-|..|++.......+....
T Consensus 336 ~lWiGt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt--~~GL~~~~~~~~~~~~~~~~~ 411 (758)
T 3ott_A 336 FYWFGGA-N-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT--DGSINRYDYATRQFIHYNIVD 411 (758)
T ss_dssp CEEEEET-T-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEEEEEEEC
T ss_pred CEEEeeC-C-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe--CCcHhhcCcCCCcEEEeecCC
Confidence 9999863 3 577887542 1 122221110 001112346788889999999987 357999997655444432111
Q ss_pred C-CCCCCCCcceEEEccCCcEEEEeCCCCe
Q psy13998 287 S-GDGEFKGLEGVAVMSNGNILVCDRENHR 315 (319)
Q Consensus 287 ~-~~~~~~~~~~l~~~~~g~~~v~~~~~~~ 315 (319)
. .......+.++..+++|+++++....|.
T Consensus 412 ~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl 441 (758)
T 3ott_A 412 NTGTYNTNWTYYIFEDTAGQLWISTCLGGI 441 (758)
T ss_dssp CC--CBSSSEEEEEECTTSEEEEEESSSCE
T ss_pred CcCCCCCceEEEEEEcCCCCEEEEECCCce
Confidence 0 0112345788888999999987755443
No 302
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.59 E-value=0.00019 Score=61.51 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=89.5
Q ss_pred eEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCce-----eeEEcC---CCcEEEEcCC-----CCeEEEEc-C
Q psy13998 61 IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPR-----GIAVGP---DNSIVVADSS-----NHRVQVFQ-S 126 (319)
Q Consensus 61 v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~---~g~~~~~~~~-----~~~i~~~~-~ 126 (319)
+++. ++++|+ ++.++.+.. +|..+++......... .+...| ++.+|+.... ++.|+.+| .
T Consensus 111 ~~~~-~~~v~v-~~~dg~l~a----lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~ 184 (571)
T 2ad6_A 111 LAYG-AGQIVK-KQANGHLLA----LDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLK 184 (571)
T ss_dssp CEEE-TTEEEE-ECTTSEEEE----EETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETT
T ss_pred cEEE-CCEEEE-EeCCCEEEE----EECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECC
Confidence 4553 445554 456788999 8887776655332111 111111 5667766543 68999999 6
Q ss_pred CCcEEEEecCCCccC--------------------------------CCCCCceeEEEeCC-CeEEEEeCC---------
Q psy13998 127 DGTFVGKFGSMGNKA--------------------------------GQLEHPHYIAVSNT-NRVIVSDSN--------- 164 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~-g~~~~~~~~--------- 164 (319)
+|+.+.++....... +.-.....++++++ +.+|+....
T Consensus 185 tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~ 264 (571)
T 2ad6_A 185 TGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMR 264 (571)
T ss_dssp TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred CCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCcc
Confidence 899888775432110 00000023677774 566665432
Q ss_pred --C----CEEEEEecCCceeeecCceeeeecccCCc---CCCCCCceeEEEcCCC---cEEEEeCCCCeEEEEeC-CCCE
Q psy13998 165 --N----HRVQIFDVNGRVFQSDGTFVGKFGSMGNK---AGQLEHPHYIAVSNTN---RVIVSDSNNHRVQIFDV-NGRV 231 (319)
Q Consensus 165 --~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g---~~~v~~~~~~~i~~~~~-~~~~ 231 (319)
+ +.|..+|.++ |+.+..+...... ......|.-+....+| ++++....++.++.+|. +|+.
T Consensus 265 ~gd~~y~~~v~Ald~~t------G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 265 PGDNKWTMTIWGRDLDT------GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp CSCCTTTTEEEEEETTT------CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred CCCceeEEEEEEEecCC------CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 1 3688888863 3555544321100 0011233323333467 35677788899999995 7877
Q ss_pred EEEe
Q psy13998 232 ITSF 235 (319)
Q Consensus 232 ~~~~ 235 (319)
+...
T Consensus 339 ~w~~ 342 (571)
T 2ad6_A 339 IVAE 342 (571)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 7655
No 303
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.53 E-value=0.00018 Score=61.79 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=90.9
Q ss_pred cceEEcC-CCc---EEEEeCCCCeEEEeccccccccceeeEEecCc--------e-eeEEcCCCcEEEEcC-----CCCe
Q psy13998 59 RGIAVGP-DNS---IVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP--------R-GIAVGPDNSIVVADS-----SNHR 120 (319)
Q Consensus 59 ~~v~~~~-~g~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~-~l~~~~~g~~~~~~~-----~~~~ 120 (319)
.+++++| +++ +++.++.++.+.. +|..+++........ . ...+. ++.+|+... .++.
T Consensus 109 ~g~av~p~~g~~~~rV~v~t~dg~l~A----lDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~ 183 (599)
T 1w6s_A 109 RGLAYWPGDGKTPALILKTQLDGNVAA----LNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGY 183 (599)
T ss_dssp CCCEEECCCSSSCCEEEEECTTSEEEE----EETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCE
T ss_pred cceEEEecCCcceeEEEEEcCCCEEEE----EECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCe
Confidence 3567743 444 1444566889988 888777665533211 1 11222 466666543 3689
Q ss_pred EEEEc-CCCcEEEEecCCCccC--------------------------------CCCCCceeEEEeCC-CeEEEEeCC--
Q psy13998 121 VQVFQ-SDGTFVGKFGSMGNKA--------------------------------GQLEHPHYIAVSNT-NRVIVSDSN-- 164 (319)
Q Consensus 121 i~~~~-~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~-g~~~~~~~~-- 164 (319)
|+.+| .+|+.+.++....... +.-..-..++++++ +.+|+..+.
T Consensus 184 v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~ 263 (599)
T 1w6s_A 184 LTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPA 263 (599)
T ss_dssp EEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCS
T ss_pred EEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCc
Confidence 99999 6899888775432110 00000124567764 455554332
Q ss_pred -------------CCEEEEEecCCceeeecCceeeeecccCCcC---CCCCCceeEEEc-CCC---cEEEEeCCCCeEEE
Q psy13998 165 -------------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA---GQLEHPHYIAVS-NTN---RVIVSDSNNHRVQI 224 (319)
Q Consensus 165 -------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~g---~~~v~~~~~~~i~~ 224 (319)
.+.|..+|.++ |+.+..+....... .....|.-+... .+| .+++....++.+++
T Consensus 264 p~~~~~r~gd~~y~~sv~Ald~~T------G~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~ 337 (599)
T 1w6s_A 264 PWNETMRPGDNKWTMTIFGRDADT------GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYT 337 (599)
T ss_dssp CSCGGGSCSCCTTSSEEEEEETTT------CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEE
T ss_pred cccCcccCCCccccceEEEEeCCC------CceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEE
Confidence 14788888873 45555443221100 011123222222 466 56777888999999
Q ss_pred EeC-CCCEEEEe
Q psy13998 225 FDV-NGRVITSF 235 (319)
Q Consensus 225 ~~~-~~~~~~~~ 235 (319)
+|. +|+.+...
T Consensus 338 lD~~tG~~lw~~ 349 (599)
T 1w6s_A 338 LDRTDGALVSAN 349 (599)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEeecc
Confidence 995 77777654
No 304
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.52 E-value=0.00031 Score=60.32 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=45.1
Q ss_pred CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcc
Q psy13998 219 NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLE 296 (319)
Q Consensus 219 ~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 296 (319)
.+.|+.||+ +|+.+.+.... .....+......|.+| .++.++.++.|| .+|+.+..+.... +... .
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~------~~~~~g~~~tagg~vf-~gt~dg~l~A~D~~tG~~lW~~~l~~---g~~~--~ 519 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMER------FAVWGGTMATAGDLVF-YGTLDGYLKARDSDTGDLLWKFKIPS---GAIG--Y 519 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEES------SCCCSBCEEETTTEEE-EECTTSEEEEEETTTCCEEEEEECSS---CCCS--C
T ss_pred cCeEEEEECCCCCEEeEecCC------CCccCcceEecCCEEE-EECCCCeEEEEECCCCCEEEEeeCCC---CcEe--c
Confidence 467888885 67776665211 1111121222334444 477899999999 6899988774321 1112 2
Q ss_pred eEEEccCCcEEEE
Q psy13998 297 GVAVMSNGNILVC 309 (319)
Q Consensus 297 ~l~~~~~g~~~v~ 309 (319)
-+.+..+|+.|++
T Consensus 520 P~~y~~~G~qyv~ 532 (599)
T 1w6s_A 520 PMTYTHKGTQYVA 532 (599)
T ss_dssp CEEEEETTEEEEE
T ss_pred cEEEEeCCEEEEE
Confidence 2556678885544
No 305
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.52 E-value=6.4e-05 Score=65.70 Aligned_cols=162 Identities=13% Similarity=0.187 Sum_probs=88.2
Q ss_pred ceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCc-----e----eeEEcCCCcEEEEcCC-----CCeEEEEc
Q psy13998 60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP-----R----GIAVGPDNSIVVADSS-----NHRVQVFQ 125 (319)
Q Consensus 60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~----~l~~~~~g~~~~~~~~-----~~~i~~~~ 125 (319)
++++. ++++|+ ++.++.|.. +|..+++........ . ...+. ++.+|+.... ++.|+.+|
T Consensus 112 ~~~~~-~~~v~v-~~~dg~l~a----lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D 184 (668)
T 1kv9_A 112 GVALW-GDKVYV-GTLDGRLIA----LDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYD 184 (668)
T ss_dssp CCEEE-BTEEEE-ECTTSEEEE----EETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEE
T ss_pred ceEEE-CCEEEE-EcCCCEEEE----EECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEE
Confidence 34553 445544 567889999 888777665543321 1 11221 4566665432 57899999
Q ss_pred -CCCcEEEEecCCC-ccCCC------------------------CCCceeEEEeCCCeEEEEeCCCC-------------
Q psy13998 126 -SDGTFVGKFGSMG-NKAGQ------------------------LEHPHYIAVSNTNRVIVSDSNNH------------- 166 (319)
Q Consensus 126 -~~~~~~~~~~~~~-~~~~~------------------------~~~~~~l~~~~~g~~~~~~~~~~------------- 166 (319)
.+|+.+..+.... ..... -.....+++++++.+++.+..++
T Consensus 185 ~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~g 264 (668)
T 1kv9_A 185 ADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGG 264 (668)
T ss_dssp TTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred CCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCC
Confidence 6899988775421 11100 01113478888654544444443
Q ss_pred ------EEEEEecCCceeeecCceeeeecccCCcCCC--C-CCceeEEEcCCCc---EEEEeCCCCeEEEEeC-CCCEEE
Q psy13998 167 ------RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQ--L-EHPHYIAVSNTNR---VIVSDSNNHRVQIFDV-NGRVIT 233 (319)
Q Consensus 167 ------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~g~---~~v~~~~~~~i~~~~~-~~~~~~ 233 (319)
.|..+|.++ |+.+..+......... . ..+....+..+|+ +++....++.++++|. +|+.+.
T Consensus 265 d~l~~~~v~AlD~~t------G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 265 DNLYLSSILAIRPDT------GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp CCTTTTEEEEECTTT------CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CceeeeeEEEEcCCC------CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 488888763 4555544321100000 1 1122222223554 5777788999999995 677764
Q ss_pred E
Q psy13998 234 S 234 (319)
Q Consensus 234 ~ 234 (319)
.
T Consensus 339 ~ 339 (668)
T 1kv9_A 339 A 339 (668)
T ss_dssp E
T ss_pred c
Confidence 3
No 306
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.48 E-value=0.00032 Score=60.20 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=46.8
Q ss_pred CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcc
Q psy13998 219 NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLE 296 (319)
Q Consensus 219 ~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 296 (319)
.+.|+.||+ +|+.+.+.... .....+...... .+++.++.++.++.|| .+|+.+..+.... +. ...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~------~~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~lW~~~~~~---g~--~a~ 532 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH------LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELWKFQTGS---GI--VSP 532 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES------SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSS---CC--CSC
T ss_pred cceEEEEECCCCCEEEEecCC------CCCcccceEeCC-CEEEEECCCCcEEEEECCCCCEEEEecCCC---Cc--ccC
Confidence 578999995 67777665211 111111122234 4444577899999999 6899998874321 11 122
Q ss_pred eEEEccCCcEEEE
Q psy13998 297 GVAVMSNGNILVC 309 (319)
Q Consensus 297 ~l~~~~~g~~~v~ 309 (319)
-+.+..+|+.|++
T Consensus 533 P~~y~~~G~qYv~ 545 (582)
T 1flg_A 533 PITWEQDGEQYLG 545 (582)
T ss_dssp CEEEEETTEEEEE
T ss_pred ceEEEECCEEEEE
Confidence 3666678986655
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.47 E-value=0.00023 Score=55.89 Aligned_cols=198 Identities=13% Similarity=0.279 Sum_probs=117.3
Q ss_pred CcEEEEeCCCCeEEEeccccccccceeeEEec--CceeeEEcCC----Cc----EEEEcCC--CCeEEEEc--CCCcEEE
Q psy13998 67 NSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT--WPRGIAVGPD----NS----IVVADSS--NHRVQVFQ--SDGTFVG 132 (319)
Q Consensus 67 g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~----g~----~~~~~~~--~~~i~~~~--~~~~~~~ 132 (319)
..++++....+.+.+ |++ +++.+..+. .++.+.+-++ |+ .+++... +++|.+|+ +....+.
T Consensus 40 ~s~ii~t~k~~gL~V----ydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVV----YSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GCEEEEEETTTEEEE----EET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred ccEEEEEcCCCCEEE----EcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 345555555678888 888 355555443 4566655542 22 3666666 78999994 4444455
Q ss_pred EecCCCcc-CCCCCCceeEEE--eC-CCe-EEEEeCCCCEEEEEecCCc-eeeecCceeeeecccCCcCCCCCCceeEEE
Q psy13998 133 KFGSMGNK-AGQLEHPHYIAV--SN-TNR-VIVSDSNNHRVQIFDVNGR-VFQSDGTFVGKFGSMGNKAGQLEHPHYIAV 206 (319)
Q Consensus 133 ~~~~~~~~-~~~~~~~~~l~~--~~-~g~-~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
.+.....+ ......|.++++ ++ .++ +.+....++.+..|++... .-...++.++++... ..+.++++
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-------sq~Egcvv 187 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-------SQTEGMAA 187 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-------SCEEEEEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-------CCcceEEE
Confidence 55321000 122367889998 66 454 3444556688888876210 000123556665432 35788999
Q ss_pred cCC-CcEEEEeCCCCeEEEEeCC------CCEEEEeCCCCCCcccc-cCcceEEEc--CCC--cEEEEeCCCCEEEEEcC
Q psy13998 207 SNT-NRVIVSDSNNHRVQIFDVN------GRVITSFGSEGSEEGQL-KFPRGVAVD--DQG--YISVGDSGNNRIQIFTP 274 (319)
Q Consensus 207 ~~~-g~~~v~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~i~~~--~~g--~~~v~~~~~~~i~~~~~ 274 (319)
++. +.+|+.... ..|+.|+.+ ++.+..+. .+++ ..+.+|++. ++| .+++++-.+++..+|+.
T Consensus 188 Dd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~-----~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 188 DDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRAD-----GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp ETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBS-----SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred cCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEec-----CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 864 677777765 459999943 23443332 1222 257888884 443 57777778899999996
Q ss_pred C--CceEEee
Q psy13998 275 D--GQFLRAF 282 (319)
Q Consensus 275 ~--g~~~~~~ 282 (319)
. .+.+..+
T Consensus 262 ~~~~~~vg~f 271 (355)
T 3amr_A 262 QGKNKYVADF 271 (355)
T ss_dssp STTCCEEEEE
T ss_pred CCCCcEEEEE
Confidence 4 4566655
No 308
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=98.38 E-value=1.7e-05 Score=57.59 Aligned_cols=150 Identities=9% Similarity=0.054 Sum_probs=86.1
Q ss_pred CCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEE
Q psy13998 144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ 223 (319)
Q Consensus 144 ~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~ 223 (319)
......++++|+|.+|+. .++.++..+........--..-..++.. ....-..+.++++|.+|++ .++.|+
T Consensus 40 w~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-----Gw~~F~a~~fD~~G~LYav--~dG~iy 110 (236)
T 1tl2_A 40 WSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-----GWNQFQFLFFDPNGYLYAV--SKDKLY 110 (236)
T ss_dssp CTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-----CGGGCSEEEECTTSCEEEE--ETTEEE
T ss_pred cccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-----ccccceEEEECCCCCEEEe--CCCEEE
Confidence 346679999999999998 6677887765321000000001111100 0111356889999999998 469999
Q ss_pred EEeC--CCCEE-----EEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCce------EEeecccCCCC
Q psy13998 224 IFDV--NGRVI-----TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQF------LRAFGCWGSGD 289 (319)
Q Consensus 224 ~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~------~~~~~~~~~~~ 289 (319)
.+++ ++... ..++ .........|.++|+|.+|++. +++++... +.+.- ...++ .
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg-----~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g-----~ 178 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVG-----SGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIG-----Q 178 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEE-----CSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEE-----S
T ss_pred EeCCCcCCCCceeccccEec-----cCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceec-----c
Confidence 9985 22110 1111 1122345789999999999998 67776655 32210 11111 1
Q ss_pred CCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998 290 GEFKGLEGVAVMSNGNILVCDRENHRI 316 (319)
Q Consensus 290 ~~~~~~~~l~~~~~g~~~v~~~~~~~i 316 (319)
.....-.-+.++++|.+++.. ++.+
T Consensus 179 ~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 179 GGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp SSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCcceEEEEEECCCCcEEEEe--CCeE
Confidence 122233446789999988777 5554
No 309
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.36 E-value=0.00037 Score=60.97 Aligned_cols=78 Identities=12% Similarity=0.176 Sum_probs=45.6
Q ss_pred CeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCCCCCCCCcce
Q psy13998 220 HRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSGDGEFKGLEG 297 (319)
Q Consensus 220 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 297 (319)
+.|+.||+ +|+.+.+... . ....+..+...|.+++.+..++.|+.|| .+|+.+..+... .+... .-
T Consensus 438 g~l~A~D~~tG~~~W~~~~------~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~---~~~~~--~p 505 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPY------P-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ---SGIVA--AP 505 (668)
T ss_dssp EEEEEEETTTTEEEEEEEE------S-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---SCCCS--CC
T ss_pred ceEEEEeCCCCcEEEEccC------C-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC---CCccc--Cc
Confidence 77999995 6776665521 1 1122223333455555668899999999 578988877432 11111 22
Q ss_pred EEEccCCcEEEE
Q psy13998 298 VAVMSNGNILVC 309 (319)
Q Consensus 298 l~~~~~g~~~v~ 309 (319)
+.+..+|++|++
T Consensus 506 ~~~~~~G~~yva 517 (668)
T 1kv9_A 506 MTFELAGRQYVA 517 (668)
T ss_dssp EEEEETTEEEEE
T ss_pred eEEEECCEEEEE
Confidence 444567875544
No 310
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.35 E-value=8.3e-08 Score=77.60 Aligned_cols=145 Identities=7% Similarity=0.059 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeee
Q psy13998 109 NSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGK 187 (319)
Q Consensus 109 g~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 187 (319)
+..+++++.++.|+.|| .+|+.+..+.. + .+.+..+..++.+|++++.++.++.||..+ |+.+..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t------G~~~w~ 74 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKN------NEGLTK 74 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-C-------CSCCCC-----CCEEECTTTCCEEEC-----------CCSEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-C-------CceecceEcCCCEEEEeCCCCEEEEEECCC------Cceeee
Confidence 44555556788999999 78998887743 1 122223345677888888899999999852 232222
Q ss_pred ecccCCcCCCCCCceeEEEcCCCcEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998 188 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN 266 (319)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~ 266 (319)
+..... ......| ++..++. ++++..++.++.||. +|+.+..+.... ...+.|++..+++++.+
T Consensus 75 ~~~~~~-~~~~~sp---~~~~~~~-v~~g~~dg~v~a~D~~tG~~~w~~~~~~----------~~~~~p~~~~v~~~~~d 139 (369)
T 2hz6_A 75 LPFTIP-ELVQASP---CRSSDGI-LYMGKKQDIWYVIDLLTGEKQQTLSSAF----------ADSLSPSTSLLYLGRTE 139 (369)
T ss_dssp CSCCHH-HHHTTCS---CC------CCCCEEEEEEEEECCC--------------------------------EEEEEEE
T ss_pred eeccCc-cccccCc---eEecCCE-EEEEeCCCEEEEEECCCCcEEEEecCCC----------cccccccCCEEEEEecC
Confidence 211000 0000111 1112333 444556788999996 577766552110 12334566666666778
Q ss_pred CEEEEEcC-CCceEEee
Q psy13998 267 NRIQIFTP-DGQFLRAF 282 (319)
Q Consensus 267 ~~i~~~~~-~g~~~~~~ 282 (319)
+.|+.||. +|+.+..+
T Consensus 140 g~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 140 YTITMYDTKTRELRWNA 156 (369)
T ss_dssp EEEECCCSSSSSCCCEE
T ss_pred CEEEEEECCCCCEEEeE
Confidence 89999994 67765544
No 311
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=98.34 E-value=0.00014 Score=56.73 Aligned_cols=227 Identities=11% Similarity=0.101 Sum_probs=127.9
Q ss_pred ceeeeecccCCCCCcCCCCcceEEcCCCc-EEEEeCC-------------CCeEEEeccccccccceeeEEecCceeeEE
Q psy13998 40 RLQFKIGSRGSEPGCFTWPRGIAVGPDNS-IVVADSS-------------NHRVQVCFPHFDLKTNCVFLAFTWPRGIAV 105 (319)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~v~~~~~g~-~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (319)
...+++...|.....+..-.+--++++|+ ++.+... ...|+. .++...... .+..-.+..+
T Consensus 37 ~~ly~~~~dg~~~~~l~~~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~----i~~dg~~~~-~l~~~~~~~~ 111 (302)
T 3s25_A 37 GRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR----IKRNGHGST-VLDPDPCIYA 111 (302)
T ss_dssp TEEEEEETTSCSCEEEEEEEEEEEEECSSEEEEEEECC------CCSSCCSEEEEE----EETTSCCCE-EEECSCEEEE
T ss_pred ceEEEEcCCCCCCEEccCCceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE----EeCCCCcce-EeecCCccEE
Confidence 45566666665554443322334455565 4555433 346777 666544322 2222233455
Q ss_pred cCCC-cEEEEc---CCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeee
Q psy13998 106 GPDN-SIVVAD---SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQS 180 (319)
Q Consensus 106 ~~~g-~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~ 180 (319)
++++ .+|++. ..+..|++.+.+|.....+... . . .+++++ +.+|++......|.+.+++|...
T Consensus 112 s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~-----~-~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~-- 179 (302)
T 3s25_A 112 SLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH-----Y-L----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE-- 179 (302)
T ss_dssp EEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS-----C-C----CCSEEETTEEEEECTTTCCEEEEETTTTEE--
T ss_pred EEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC-----C-c----eEeeEECCEEEEEeCCCceEEEEECCCCCE--
Confidence 6655 577776 4567888888887655555321 1 1 233453 47788877678899988876421
Q ss_pred cCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEeCCC-CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCC-
Q psy13998 181 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNN-HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG- 257 (319)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g- 257 (319)
..+. . .+....+.|++ .+|++...+ ..|.+.+++|.....+.. ... ..++|++
T Consensus 180 -----~~l~-----~----~~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~-----~~~-----~~~~~~g~ 235 (302)
T 3s25_A 180 -----ALFY-----D----CNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE-----ANI-----EHYNVYGS 235 (302)
T ss_dssp -----EEEE-----C----SCEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC-----SCE-----EEEEEETT
T ss_pred -----EEEe-----C----CCccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC-----CCc-----ceEEECCC
Confidence 1110 0 11123355654 667776543 589999998876666521 111 2366666
Q ss_pred cEEEE-eCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998 258 YISVG-DSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI 316 (319)
Q Consensus 258 ~~~v~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i 316 (319)
.+|.+ ....+.|...+.+|...+.+.. . .+.++.+.. +.+|.++...+.|
T Consensus 236 ~Iy~~~~~~~~~i~~~~~DG~~r~~l~~-----~---~~~~i~i~~-d~Iy~td~~~~~i 286 (302)
T 3s25_A 236 LIFYQRGGDNPALCVVKNDGTGFKELAK-----G---EFCNINVTS-QYVYFTDFVSNKE 286 (302)
T ss_dssp EEEEEECSSSCEEEEEETTSCCCEEEEE-----S---CEEEEEECS-SEEEEEETTTCCE
T ss_pred EEEEEECCCCcEEEEEECCCCccEEeeC-----C---ccceEEEeC-CEEEEEECCCCeE
Confidence 45554 4556899999999876555521 1 233555543 3678887666654
No 312
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.23 E-value=0.0012 Score=53.29 Aligned_cols=215 Identities=15% Similarity=0.185 Sum_probs=111.6
Q ss_pred CCcEEEEeCCCCeEEEeccccccccceeeEEecCc---------eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEec
Q psy13998 66 DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP---------RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFG 135 (319)
Q Consensus 66 ~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~ 135 (319)
++.++ .++.++.|.. ++..+++........ ....+. ++.+| .+..++.+..+| .+|+.+....
T Consensus 143 ~~~v~-v~~~~g~l~~----~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~-~g~~~g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 143 DGLVL-IHTSNGQLQA----LNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAV-VGGDNGRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp TTEEE-EECTTSEEEE----EETTTCCEEEEEECCC-----CCCCCCEEE-TTEEE-ECCTTTEEEEEETTTCCEEEEEE
T ss_pred CCEEE-EEcCCCeEEE----EECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEE-EEcCCCEEEEEECCCCcEEEEEe
Confidence 34444 3456677877 777665554433211 122232 34444 456678999999 5788877664
Q ss_pred CCCccCC-CCCC---c-eeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998 136 SMGNKAG-QLEH---P-HYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 210 (319)
Q Consensus 136 ~~~~~~~-~~~~---~-~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (319)
....... .... + ....+ .++.+|+. +.++.+..+|..+ |+.+..... .....+.++ ++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~-~~~g~l~~~d~~t------G~~~w~~~~--------~~~~~~~~~-~~ 278 (376)
T 3q7m_A 216 ISQATGSTEIDRLSDVDTTPVV-VNGVVFAL-AYNGNLTALDLRS------GQIMWKREL--------GSVNDFIVD-GN 278 (376)
T ss_dssp CCC-----------CCCCCCEE-ETTEEEEE-CTTSCEEEEETTT------CCEEEEECC--------CCEEEEEEE-TT
T ss_pred cccCCCCcccccccccCCCcEE-ECCEEEEE-ecCcEEEEEECCC------CcEEeeccC--------CCCCCceEE-CC
Confidence 3211000 0000 0 11112 24666665 4577899998863 344433321 122334443 55
Q ss_pred cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc-CCCceEEeecccCCC
Q psy13998 211 RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT-PDGQFLRAFGCWGSG 288 (319)
Q Consensus 211 ~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~ 288 (319)
.+|+... ++.++.+|. +|+.+....... ........+. ++.+|+. ..++.|+.+| .+|+.+......
T Consensus 279 ~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~-~~~l~v~-~~~g~l~~~d~~tG~~~~~~~~~--- 347 (376)
T 3q7m_A 279 RIYLVDQ-NDRVMALTIDGGVTLWTQSDLL-----HRLLTSPVLY-NGNLVVG-DSEGYLHWINVEDGRFVAQQKVD--- 347 (376)
T ss_dssp EEEEEET-TCCEEEEETTTCCEEEEECTTT-----TSCCCCCEEE-TTEEEEE-CTTSEEEEEETTTCCEEEEEECC---
T ss_pred EEEEEcC-CCeEEEEECCCCcEEEeecccC-----CCcccCCEEE-CCEEEEE-eCCCeEEEEECCCCcEEEEEecC---
Confidence 6666654 678999995 677766553111 1112222332 3555555 5678999999 578887766321
Q ss_pred CCCCCCcceEEEccCCcEEEEeCCCCeEEeC
Q psy13998 289 DGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319 (319)
Q Consensus 289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~v~ 319 (319)
.......... .++.+|+.. .++.|..|
T Consensus 348 --~~~~~~~~~~-~~~~l~v~~-~~G~l~~~ 374 (376)
T 3q7m_A 348 --SSGFQTEPVA-ADGKLLIQA-KDGTVYSI 374 (376)
T ss_dssp --TTCBCSCCEE-ETTEEEEEB-TTSCEEEE
T ss_pred --CCcceeCCEE-ECCEEEEEe-CCCEEEEE
Confidence 1111122222 366776654 45666543
No 313
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=98.22 E-value=0.00032 Score=54.69 Aligned_cols=197 Identities=10% Similarity=0.033 Sum_probs=112.6
Q ss_pred eeeecccCCCCCcCCCCcceEEcCCCc-EEEEe---CCCCeEEEeccccccccceeeEEecCceeeEEcCCC-cEEEEcC
Q psy13998 42 QFKIGSRGSEPGCFTWPRGIAVGPDNS-IVVAD---SSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN-SIVVADS 116 (319)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~v~~~~~g~-~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g-~~~~~~~ 116 (319)
.+++...+.....+..-.+..++++|+ ++.+. .....|+. .++.......-.... ..++++++ .+|+++.
T Consensus 90 Iy~i~~dg~~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~----~~~dGs~~~~lt~~~-~~~~~~~g~~iy~t~~ 164 (302)
T 3s25_A 90 LCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYR----IRIDGEEKKKIKNHY-LFTCNTSDRYFYYNNP 164 (302)
T ss_dssp EEEEETTSCCCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEE----EETTSCCCEEEESSC-CCCSEEETTEEEEECT
T ss_pred EEEEeCCCCcceEeecCCccEEEEeCCEEEEEeecCCCCceEEE----EECCCCCeEEEeCCC-ceEeeEECCEEEEEeC
Confidence 345555555544444445557777665 56665 45667777 555432222111111 13445555 5777877
Q ss_pred CCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeC-CCeEEEEeCCC-CEEEEEecCCceeeecCceeeeecccCCc
Q psy13998 117 SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNN-HRVQIFDVNGRVFQSDGTFVGKFGSMGNK 194 (319)
Q Consensus 117 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (319)
....|.+.+.+|...+.+.. + +....+.| .+.+|++...+ ..|.+.+++|.. ...+.
T Consensus 165 g~~~Iy~~~l~g~~~~~l~~-----~----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-------~~~Lt----- 223 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALFYD-----C----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-------PVVLT----- 223 (302)
T ss_dssp TTCCEEEEETTTTEEEEEEC-----S----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCC-------CEECS-----
T ss_pred CCceEEEEECCCCCEEEEeC-----C----CccceeeecCCEEEEEEcCCCcEEEEEECCCCC-------eEEEe-----
Confidence 67889999988776555521 1 12334566 45677776543 578888887642 11111
Q ss_pred CCCCCCceeEEEcCCC-cEEEE-eCCCCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEE
Q psy13998 195 AGQLEHPHYIAVSNTN-RVIVS-DSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF 272 (319)
Q Consensus 195 ~~~~~~~~~~~~~~~g-~~~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~ 272 (319)
.. .. ..++|++ .+|++ ......|...+.+|...+.+. .. ....+.+. .+.+|.+....+.|...
T Consensus 224 ~~--~~---~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~-----~~---~~~~i~i~-~d~Iy~td~~~~~i~~~ 289 (302)
T 3s25_A 224 EA--NI---EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELA-----KG---EFCNINVT-SQYVYFTDFVSNKEYCT 289 (302)
T ss_dssp CS--CE---EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEE-----ES---CEEEEEEC-SSEEEEEETTTCCEEEE
T ss_pred CC--Cc---ceEEECCCEEEEEECCCCcEEEEEECCCCccEEee-----CC---ccceEEEe-CCEEEEEECCCCeEEEE
Confidence 00 01 2356655 56665 445678999999987655552 11 12355553 34789998877788887
Q ss_pred cCCCce
Q psy13998 273 TPDGQF 278 (319)
Q Consensus 273 ~~~g~~ 278 (319)
..+|.-
T Consensus 290 ~~dGs~ 295 (302)
T 3s25_A 290 STQNPD 295 (302)
T ss_dssp ESSSCC
T ss_pred ECCCCC
Confidence 777654
No 314
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=98.16 E-value=0.00028 Score=58.41 Aligned_cols=126 Identities=16% Similarity=0.199 Sum_probs=74.4
Q ss_pred CCCceeEEEeCCCe--EEEEeCCCCEEEEEecCCceeeecCceeeeecc---cCCcCCCCCCceeEEEcCC----CcEEE
Q psy13998 144 LEHPHYIAVSNTNR--VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGS---MGNKAGQLEHPHYIAVSNT----NRVIV 214 (319)
Q Consensus 144 ~~~~~~l~~~~~g~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----g~~~v 214 (319)
+..|.+|++.|+|. +||+.. .+.|++++.++.... ..+..+.. .+........+.+|+++|+ +.+|+
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~---~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv 88 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFK---EPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV 88 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCS---SCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeee---eeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence 46889999999985 888875 688999876553110 11111110 0000112345788999985 67777
Q ss_pred EeCC--C----------CeEEEEeCCC-----------CEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC------
Q psy13998 215 SDSN--N----------HRVQIFDVNG-----------RVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG------ 265 (319)
Q Consensus 215 ~~~~--~----------~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~------ 265 (319)
+-+. + .+|..|..+. +.+..+.. .........|+|+|||.+|++.+.
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~----~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~ 164 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE----LHRKHLGGQLLFGPDGFLYIILGDGMITLD 164 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE----SSSSSCEEEEEECTTSCEEEEECCTTCCHH
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC----CCCcccCCcEeECCCCcEEEEeCCCCCCCC
Confidence 6432 1 2666676421 12222211 111234578999999999998654
Q ss_pred -----------CCEEEEEcCCCc
Q psy13998 266 -----------NNRIQIFTPDGQ 277 (319)
Q Consensus 266 -----------~~~i~~~~~~g~ 277 (319)
.++|..++++|.
T Consensus 165 ~~~~~q~~~~~~GkIlRi~~dg~ 187 (463)
T 2wg3_C 165 DMEEMDGLSDFTGSVLRLDVDTD 187 (463)
T ss_dssp HHHHCTTCCSCTTEEEEEBCCCC
T ss_pred ccccccCcCCCCeeEEEEECCCC
Confidence 256888887763
No 315
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.14 E-value=0.002 Score=52.01 Aligned_cols=191 Identities=17% Similarity=0.161 Sum_probs=99.3
Q ss_pred CCcEEEEeCCCCeEEEeccccccccceeeEEecC-------------c-eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcE
Q psy13998 66 DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW-------------P-RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTF 130 (319)
Q Consensus 66 ~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------~-~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~ 130 (319)
++.+|+. +.++.|.. +|..+++....... . ..++. .++.+|+. +.++.|+.+| .+|+.
T Consensus 53 ~~~v~~~-~~~g~v~a----~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~-~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 53 DNVVYAA-DRAGLVKA----LNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGGHVYIG-SEKAQVYALNTSDGTV 125 (376)
T ss_dssp TTEEEEE-CTTSEEEE----EETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETTEEEEE-ETTSEEEEEETTTCCE
T ss_pred CCEEEEE-cCCCeEEE----EEccCCceeeeecCccccccccccCcccccCceE-eCCEEEEE-cCCCEEEEEECCCCCE
Confidence 4555554 55678888 88876665443222 1 11222 24556664 4578999999 67888
Q ss_pred EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC
Q psy13998 131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 210 (319)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (319)
+......... .....+. ++.+|+ .+.++.+..+|..+ |+.+.......... .........+. ++
T Consensus 126 ~W~~~~~~~~------~~~p~~~-~~~v~v-~~~~g~l~~~d~~t------G~~~W~~~~~~~~~-~~~~~~~~~~~-~~ 189 (376)
T 3q7m_A 126 AWQTKVAGEA------LSRPVVS-DGLVLI-HTSNGQLQALNEAD------GAVKWTVNLDMPSL-SLRGESAPTTA-FG 189 (376)
T ss_dssp EEEEECSSCC------CSCCEEE-TTEEEE-ECTTSEEEEEETTT------CCEEEEEECCC------CCCCCCEEE-TT
T ss_pred EEEEeCCCce------EcCCEEE-CCEEEE-EcCCCeEEEEECCC------CcEEEEEeCCCCce-eecCCCCcEEE-CC
Confidence 8776433211 1112222 455555 55678999999753 34443332211100 00001112232 44
Q ss_pred cEEEEeCCCCeEEEEeC-CCCEEEEeCCCCCCc----ccccCc-ceEEEcCCCcEEEEeCCCCEEEEEcC-CCceEEee
Q psy13998 211 RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEE----GQLKFP-RGVAVDDQGYISVGDSGNNRIQIFTP-DGQFLRAF 282 (319)
Q Consensus 211 ~~~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~----~~~~~~-~~i~~~~~g~~~v~~~~~~~i~~~~~-~g~~~~~~ 282 (319)
. ++.+..++.++.+|. +|+.+.......... ..+... ....+ .++.+|+. +.++.++.+|. +|+.+...
T Consensus 190 ~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~-~~~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 190 A-AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFAL-AYNGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp E-EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEE-CTTSCEEEEETTTCCEEEEE
T ss_pred E-EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEE-ecCcEEEEEECCCCcEEeec
Confidence 4 444566889999996 677776653221100 000000 11112 24556655 45788999995 78877665
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=98.12 E-value=1.7e-05 Score=57.51 Aligned_cols=107 Identities=11% Similarity=0.122 Sum_probs=68.0
Q ss_pred CCceeEEEcCCCcEEEEeCCCCeEEEEeCCC-C------EEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEE
Q psy13998 199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG-R------VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQI 271 (319)
Q Consensus 199 ~~~~~~~~~~~g~~~v~~~~~~~i~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~ 271 (319)
.....++++|+|.+|++ .++.++..++.. . .-+.++.. ....-..+.++++|.+|++ .++.|+.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-----Gw~~F~a~~fD~~G~LYav--~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-----GWNQFQFLFFDPNGYLYAV--SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-----CGGGCSEEEECTTSCEEEE--ETTEEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-----ccccceEEEECCCCCEEEe--CCCEEEE
Confidence 45668999999999988 577899998632 1 12233211 1112367899999999999 4599999
Q ss_pred EcC--CCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeE
Q psy13998 272 FTP--DGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI 316 (319)
Q Consensus 272 ~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i 316 (319)
+++ ++.--..................|.++|+|.+|+.. ++++
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 995 222100000000002233456889999999999988 5554
No 317
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.11 E-value=0.0012 Score=57.80 Aligned_cols=121 Identities=10% Similarity=0.147 Sum_probs=68.2
Q ss_pred eeeEEcC-CCcEEEEcCCCC-----------eEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC-CCCE
Q psy13998 101 RGIAVGP-DNSIVVADSSNH-----------RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NNHR 167 (319)
Q Consensus 101 ~~l~~~~-~g~~~~~~~~~~-----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~ 167 (319)
...++.+ ++++|+.++.+. .+.+||........+... .........++++..++++|+.++ .+..
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~--~~~~~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT--VTKHDMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE--ECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc--CCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence 4567776 788888864321 578898433221111100 011112334577788999999987 3457
Q ss_pred EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-CC-----CeEEEEeCCCCEEEE
Q psy13998 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-NN-----HRVQIFDVNGRVITS 234 (319)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~-----~~i~~~~~~~~~~~~ 234 (319)
+.+||+.... .... . .... ...-.++++.++|++|+.+. .+ ..+.+||+.......
T Consensus 267 v~~yd~~t~~------W~~~-~---~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 267 TSLYDSSSDS------WIPG-P---DMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp EEEEEGGGTE------EEEC-C---CCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred eEEecCcCCc------eeEC-C---CCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence 9999987432 1111 0 0011 11123455667889999887 33 568899976544444
No 318
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.10 E-value=0.0026 Score=54.58 Aligned_cols=164 Identities=12% Similarity=0.099 Sum_probs=86.8
Q ss_pred ceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCc---------eeeEEcC---CCc-EEEEcC------CCCe
Q psy13998 60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWP---------RGIAVGP---DNS-IVVADS------SNHR 120 (319)
Q Consensus 60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~---~g~-~~~~~~------~~~~ 120 (319)
++++. ++++|+. +.++.|.. +|..+++...+.... ....+.. +|+ .++.+. .++.
T Consensus 112 g~a~~-~~~v~~~-t~dg~l~A----lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~ 185 (582)
T 1flg_A 112 GAAIY-GDKVFFG-TLDASVVA----LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGR 185 (582)
T ss_dssp CCEEE-TTEEEEE-ETTTEEEE----EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCE
T ss_pred ccEEE-CCEEEEE-eCCCEEEE----EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCE
Confidence 34443 4555554 45788888 888777665433211 1111221 122 344433 3689
Q ss_pred EEEEc-CCCcEEEEecCCCcc--------------CC---------------------CCCCceeEEEeCC-CeEEEEeC
Q psy13998 121 VQVFQ-SDGTFVGKFGSMGNK--------------AG---------------------QLEHPHYIAVSNT-NRVIVSDS 163 (319)
Q Consensus 121 i~~~~-~~~~~~~~~~~~~~~--------------~~---------------------~~~~~~~l~~~~~-g~~~~~~~ 163 (319)
|+.+| .+|+.+......... .+ .-..-..++++++ +.+|+...
T Consensus 186 v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~g 265 (582)
T 1flg_A 186 LFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAG 265 (582)
T ss_dssp EEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEEC
T ss_pred EEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCC
Confidence 99999 688888765432100 00 0001124677774 56666553
Q ss_pred C-------------------C----CEEEEEecCCceeeecCceeeeecccCCc---CCCCCCceeEEEc-CCC---cEE
Q psy13998 164 N-------------------N----HRVQIFDVNGRVFQSDGTFVGKFGSMGNK---AGQLEHPHYIAVS-NTN---RVI 213 (319)
Q Consensus 164 ~-------------------~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~g---~~~ 213 (319)
. + +.|..+|.++ |+.+..+...... ......|.-+... .+| .++
T Consensus 266 n~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T------G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v 339 (582)
T 1flg_A 266 NPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS------GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKAT 339 (582)
T ss_dssp CBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT------CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEE
T ss_pred CCCcccCcccccCCCcccccCCcccceEEEEeCCC------CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEE
Confidence 1 2 5788888763 4555544321100 0011223323332 466 367
Q ss_pred EEeCCCCeEEEEeC-CCCEEEEe
Q psy13998 214 VSDSNNHRVQIFDV-NGRVITSF 235 (319)
Q Consensus 214 v~~~~~~~i~~~~~-~~~~~~~~ 235 (319)
+....++.++++|. +|+.+..+
T Consensus 340 ~~~~~~G~l~~lD~~tG~~lw~~ 362 (582)
T 1flg_A 340 AHADRNGFFYVVDRSNGKLQNAF 362 (582)
T ss_dssp EEECTTSEEEEEETTTCCEEEEE
T ss_pred EEECCCceEEEEECCCCCEeccc
Confidence 77888999999995 67777655
No 319
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.96 E-value=0.0039 Score=49.28 Aligned_cols=228 Identities=7% Similarity=-0.038 Sum_probs=118.0
Q ss_pred CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe-------cCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc
Q psy13998 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF-------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT 129 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~ 129 (319)
...+|.+++ +++|+.+ ..+.|.. ..+.+..+... ..+..+.+.+++.+|+++. ++.|+.-+..|+
T Consensus 81 ~~~~i~~~~-~~~~~~g-~~g~i~~-----S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~ 152 (327)
T 2xbg_A 81 RFNSVSFQG-NEGWIVG-EPPIMLH-----TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGK 152 (327)
T ss_dssp EEEEEEEET-TEEEEEE-ETTEEEE-----ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTS
T ss_pred cEEEEEecC-CeEEEEE-CCCeEEE-----ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCC
Confidence 356788875 6677664 3455544 11112222211 1345677666677777664 455554433344
Q ss_pred EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998 130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209 (319)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (319)
.-..... .....+..+++.+++.+++.+......+-.|..+. .... .. .........++++++
T Consensus 153 tW~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~------tW~~-~~-----~~~~~~~~~~~~~~~ 215 (327)
T 2xbg_A 153 NWQALVQ-----EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQT------AWEP-HN-----RTTSRRLHNMGFTPD 215 (327)
T ss_dssp SEEEEEC-----SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCS------SCEE-EE-----CCSSSCEEEEEECTT
T ss_pred CCEEeec-----CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCC------ceeE-CC-----CCCCCccceeEECCC
Confidence 3222221 11235678888888888877654333332332222 1111 10 011234567888888
Q ss_pred CcEEEEeCCCCeEEEEeCC-CCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCCCceEEeecccCCC
Q psy13998 210 NRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG 288 (319)
Q Consensus 210 g~~~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~ 288 (319)
+++|++.. ++.+++.+.+ |+....+.... .........+++.+++.+|+++. ++.|++-...|+.-..+...
T Consensus 216 g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~--~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S~DgG~tW~~~~~~--- 288 (327)
T 2xbg_A 216 GRLWMIVN-GGKIAFSDPDNSENWGELLSPL--RRNSVGFLDLAYRTPNEVWLAGG-AGALLCSQDGGQTWQQDVDV--- 288 (327)
T ss_dssp SCEEEEET-TTEEEEEETTEEEEECCCBCTT--SSCCSCEEEEEESSSSCEEEEES-TTCEEEESSTTSSCEECGGG---
T ss_pred CCEEEEeC-CceEEEecCCCCCeeEeccCCc--ccCCcceEEEEecCCCEEEEEeC-CCeEEEeCCCCcccEEcCcc---
Confidence 88887765 5677776544 43322221110 00112356788888888888875 46664444445544433210
Q ss_pred CCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998 289 DGEFKGLEGVAVMSNGNILVCDRENHRIQ 317 (319)
Q Consensus 289 ~~~~~~~~~l~~~~~g~~~v~~~~~~~i~ 317 (319)
........++.+.+++.+++++ .++.|.
T Consensus 289 ~~~~~~~~~v~~~~~~~~~~~G-~~G~i~ 316 (327)
T 2xbg_A 289 KKVPSNFYKILFFSPDQGFILG-QKGILL 316 (327)
T ss_dssp TTSSSCCCEEEEEETTEEEEEC-STTEEE
T ss_pred CCCCCCeEEEEEECCCceEEEc-CCceEE
Confidence 0112346778887666666554 556654
No 320
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.81 E-value=0.0076 Score=47.64 Aligned_cols=223 Identities=6% Similarity=-0.049 Sum_probs=116.7
Q ss_pred CCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEe--------cCceeeEEcCCCcEEEEcCCCCeEEEEcCCC
Q psy13998 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF--------TWPRGIAVGPDNSIVVADSSNHRVQVFQSDG 128 (319)
Q Consensus 57 ~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~ 128 (319)
.+.+|.+.+++..|+++. .+.|.. ..+.+..+... ....+|.+++ +.+|+++ ..+.|+.-+..|
T Consensus 37 ~~~~v~~~~~~~~~~~G~-~g~i~~-----s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g-~~g~i~~S~DgG 108 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGV-NATLME-----TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVG-EPPIMLHTTDGG 108 (327)
T ss_dssp CEEEEEESSSSCEEEEET-TTEEEE-----ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEE-ETTEEEEESSTT
T ss_pred cEEEEEECCCCcEEEEcC-CCeEEE-----eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEE-CCCeEEEECCCC
Confidence 567888887788888654 566544 11111111111 1346778875 5677664 345565533334
Q ss_pred cEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC
Q psy13998 129 TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN 208 (319)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (319)
+.-...... ......+..+++.+++.+|+.+. .+.+..-.-.|. ...... ........++++++
T Consensus 109 ~tW~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~------tW~~~~------~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 109 QSWSQIPLD---PKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGK------NWQALV------QEAIGVMRNLNRSP 172 (327)
T ss_dssp SSCEECCCC---TTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTS------SEEEEE------CSCCCCEEEEEECT
T ss_pred CCceECccc---cCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCC------CCEEee------cCCCcceEEEEEcC
Confidence 432222211 00112356777777788777764 444443221121 111111 01122456788888
Q ss_pred CCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCCEEEEEcCC-CceEEeecccC
Q psy13998 209 TNRVIVSDSNNHRVQIFD-VNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD-GQFLRAFGCWG 286 (319)
Q Consensus 209 ~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~~~-g~~~~~~~~~~ 286 (319)
++.+++++.. +.+++-+ ..|.....+.. ........+++++++++|+++. ++.+++.+.+ |+....+....
T Consensus 173 ~~~~~~~g~~-G~~~~S~d~gG~tW~~~~~-----~~~~~~~~~~~~~~g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~ 245 (327)
T 2xbg_A 173 SGEYVAVSSR-GSFYSTWEPGQTAWEPHNR-----TTSRRLHNMGFTPDGRLWMIVN-GGKIAFSDPDNSENWGELLSPL 245 (327)
T ss_dssp TSCEEEEETT-SSEEEEECTTCSSCEEEEC-----CSSSCEEEEEECTTSCEEEEET-TTEEEEEETTEEEEECCCBCTT
T ss_pred CCcEEEEECC-CcEEEEeCCCCCceeECCC-----CCCCccceeEECCCCCEEEEeC-CceEEEecCCCCCeeEeccCCc
Confidence 8888877654 4555543 32443333311 1123456788899998887764 5777776434 54433332110
Q ss_pred CCCCCCCCcceEEEccCCcEEEEeCC
Q psy13998 287 SGDGEFKGLEGVAVMSNGNILVCDRE 312 (319)
Q Consensus 287 ~~~~~~~~~~~l~~~~~g~~~v~~~~ 312 (319)
......+.++++.+++.+|+++..
T Consensus 246 --~~~~~~~~~v~~~~~~~~~~~g~~ 269 (327)
T 2xbg_A 246 --RRNSVGFLDLAYRTPNEVWLAGGA 269 (327)
T ss_dssp --SSCCSCEEEEEESSSSCEEEEEST
T ss_pred --ccCCcceEEEEecCCCEEEEEeCC
Confidence 011224677888888888887653
No 321
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=97.49 E-value=0.0033 Score=52.71 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=70.1
Q ss_pred CCCCceeEEEcC-CCcEEEEeCC---------------------CCeEEEEeCCC------CE---EEEeC-CCCC----
Q psy13998 197 QLEHPHYIAVSN-TNRVIVSDSN---------------------NHRVQIFDVNG------RV---ITSFG-SEGS---- 240 (319)
Q Consensus 197 ~~~~~~~~~~~~-~g~~~v~~~~---------------------~~~i~~~~~~~------~~---~~~~~-~~~~---- 240 (319)
.+..|-.++++| ++.+|++... .|.|+.|..++ .. +..+. ....
T Consensus 382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~ 461 (592)
T 4a9v_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence 345788999998 6788887543 27899997532 11 11111 1100
Q ss_pred ---------CcccccCcceEEEcCCCcEEE-EeCC-----------CCEEEEEcC-CCceEEeecccCCCCCCCCCcceE
Q psy13998 241 ---------EEGQLKFPRGVAVDDQGYISV-GDSG-----------NNRIQIFTP-DGQFLRAFGCWGSGDGEFKGLEGV 298 (319)
Q Consensus 241 ---------~~~~~~~~~~i~~~~~g~~~v-~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l 298 (319)
....++.|..|+|+++|.+|+ ++.. .+.|+.+++ +|++...+. ......++++
T Consensus 462 ~~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-----~P~~aEpnGi 536 (592)
T 4a9v_A 462 PKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-----GPIGCEVTGI 536 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-----CCTTCEEEEE
T ss_pred cccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-----CCCCccccCC
Confidence 012478899999999999999 5432 347888887 566544441 1223568999
Q ss_pred EEccCCc-EEEEe
Q psy13998 299 AVMSNGN-ILVCD 310 (319)
Q Consensus 299 ~~~~~g~-~~v~~ 310 (319)
+|+||++ +||+-
T Consensus 537 afSPD~ktLfV~v 549 (592)
T 4a9v_A 537 SFSPDQKTLFVGI 549 (592)
T ss_dssp EECTTSSEEEEEE
T ss_pred EECCCCCEEEEEE
Confidence 9999998 55543
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.47 E-value=0.023 Score=44.18 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=107.2
Q ss_pred CCcEEEEeC-CC-----CeEEEeccccccccceeeE--EecCc---eeeEEcCCCcEEEEcCCC-----CeEEEEcCCCc
Q psy13998 66 DNSIVVADS-SN-----HRVQVCFPHFDLKTNCVFL--AFTWP---RGIAVGPDNSIVVADSSN-----HRVQVFQSDGT 129 (319)
Q Consensus 66 ~g~~~~~~~-~~-----~~v~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~ 129 (319)
++.+++.++ .+ ..+.+ ++..+..... .++.+ .+++. .++.+|+.++.+ ..+.+||....
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEK----YDPKTQEWSFLPSITRKRRYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEE----EETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEE----EcCCCCeEEeCCCCChhhccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCC
Confidence 455666665 22 35666 6665443322 11111 22333 357888887643 46889994332
Q ss_pred E---EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998 130 F---VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP 201 (319)
Q Consensus 130 ~---~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (319)
. -..+... ... ..-.+++.. ++++|+.++.+ ..+.+||+....-. .+... +......
T Consensus 89 ~~~~W~~~~~~---p~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~----~~~~~------p~~r~~~ 153 (301)
T 2vpj_A 89 EDGVWYSVAPM---NVR-RGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWS----MLGDM------QTAREGA 153 (301)
T ss_dssp TTCCCEEECCC---SSC-CBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEE----EEEEC------SSCCBSC
T ss_pred CCCeeEECCCC---CCC-ccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEE----ECCCC------CCCcccc
Confidence 2 2222211 111 111233333 68899887643 46888888754221 11111 1111112
Q ss_pred eeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEE
Q psy13998 202 HYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQI 271 (319)
Q Consensus 202 ~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~ 271 (319)
+++. .++++|+.+..+ ..+.+||+.......+.... ...... +++. -++++|+.++.+ ..+.+
T Consensus 154 -~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~ 226 (301)
T 2vpj_A 154 -GLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA---TKRSGA-GVAL-LNDHIYVVGGFDGTAHLSSVEA 226 (301)
T ss_dssp -EEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS---SCCBSC-EEEE-ETTEEEEECCBCSSSBCCCEEE
T ss_pred -eEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC---cccccc-eEEE-ECCEEEEEeCCCCCcccceEEE
Confidence 2222 267888887643 56899998766655553211 111111 2222 256888888753 57899
Q ss_pred EcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998 272 FTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN 313 (319)
Q Consensus 272 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~ 313 (319)
||.....-..+... +.. ..-.+++. -++++|+.++.+
T Consensus 227 yd~~~~~W~~~~~~---p~~-r~~~~~~~-~~~~i~v~GG~~ 263 (301)
T 2vpj_A 227 YNIRTDSWTTVTSM---TTP-RCYVGATV-LRGRLYAIAGYD 263 (301)
T ss_dssp EETTTTEEEEECCC---SSC-CBSCEEEE-ETTEEEEECCBC
T ss_pred EeCCCCcEEECCCC---CCc-ccceeEEE-ECCEEEEEcCcC
Confidence 99765554444211 111 11122222 367888888754
No 323
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.46 E-value=0.05 Score=47.88 Aligned_cols=230 Identities=9% Similarity=0.073 Sum_probs=114.2
Q ss_pred CCCcEEEEeCCC----CeEEEeccccccccceeeEEe--------cCc---eeeEEcC-CCcEEEEcCCC------CeEE
Q psy13998 65 PDNSIVVADSSN----HRVQVCFPHFDLKTNCVFLAF--------TWP---RGIAVGP-DNSIVVADSSN------HRVQ 122 (319)
Q Consensus 65 ~~g~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~--------~~~---~~l~~~~-~g~~~~~~~~~------~~i~ 122 (319)
.++.+|+.++.+ ..+.+ |+..+....... ..+ ++++..+ ++++|+.++.+ +.+.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~----yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQ----LSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEE----EEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEE----EECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEE
Confidence 567888887743 45777 676654332211 111 3444444 77899887643 3578
Q ss_pred EEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCCC--EEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998 123 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH 200 (319)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (319)
+||.....-..+... . ....-++.+...++++|+.++.++ .+.+||+....-. . ....+..+.....
T Consensus 472 ~yd~~t~~W~~~~~~---p-~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~------~-~~~~g~~p~~r~~ 540 (695)
T 2zwa_A 472 IFDMKTREWSMIKSL---S-HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK------D-VTPKDEFFQNSLV 540 (695)
T ss_dssp EEETTTTEEEECCCC---S-BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE------E-CCCSSGGGGSCCB
T ss_pred EEeCCCCcEEECCCC---C-CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE------E-ccCCCCCCCcccc
Confidence 888655433333211 1 111123444434789999887543 6888988754211 1 1111111111122
Q ss_pred ceeEEEcCC-CcEEEEeCC-------CCeEEEEeCCCCE------EEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-
Q psy13998 201 PHYIAVSNT-NRVIVSDSN-------NHRVQIFDVNGRV------ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG- 265 (319)
Q Consensus 201 ~~~~~~~~~-g~~~v~~~~-------~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~- 265 (319)
..+++++.+ +++|+.++. .+.+.+||+.... ...+... ......-.+++...++++|+.++.
T Consensus 541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~---p~~~R~~~~~~~~~~~~iyv~GG~~ 617 (695)
T 2zwa_A 541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH---PLFQRYGSQIKYITPRKLLIVGGTS 617 (695)
T ss_dssp SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC---GGGCCBSCEEEEEETTEEEEECCBC
T ss_pred eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC---CCCCcccceEEEeCCCEEEEECCcc
Confidence 233555655 788888764 2568999965433 2332110 000001123344344788988873
Q ss_pred -------CCEEEEEcCCCceEEeecccCCC---CCCCCCcceEEEccCCcEEEEeCC
Q psy13998 266 -------NNRIQIFTPDGQFLRAFGCWGSG---DGEFKGLEGVAVMSNGNILVCDRE 312 (319)
Q Consensus 266 -------~~~i~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~v~~~~ 312 (319)
...+.+||+..........+... ......-.+.+...+|++|+.|+.
T Consensus 618 ~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 618 PSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp SSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 35689999765443333111000 000011133444456688888774
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.29 E-value=0.039 Score=42.93 Aligned_cols=215 Identities=9% Similarity=-0.011 Sum_probs=108.5
Q ss_pred CcEEEEeCC--CCeEEEeccccccccceeeEE--ecCc---eeeEEcCCCcEEEEcCCC----CeEEEEcCCCcEEEEec
Q psy13998 67 NSIVVADSS--NHRVQVCFPHFDLKTNCVFLA--FTWP---RGIAVGPDNSIVVADSSN----HRVQVFQSDGTFVGKFG 135 (319)
Q Consensus 67 g~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~ 135 (319)
+.+++.++. ...+.+ ||..+...... ++.+ .+++. -++.+|+.++.+ ..+.+||.....-..+.
T Consensus 12 ~~l~~~GG~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~ 86 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRY----FNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL 86 (306)
T ss_dssp CEEEEEECCSSTTSEEE----EETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCCCceEEE----ecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence 445665543 356777 67665443221 1111 22333 357788887644 67889996554333332
Q ss_pred CCCccCCCCCCceeEEEeCCCeEEEEeCCC------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCC
Q psy13998 136 SMGNKAGQLEHPHYIAVSNTNRVIVSDSNN------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209 (319)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (319)
... .. ..-.+++. -++++|+.++.+ ..+.+||+....-. . ... .+..... .+++. .+
T Consensus 87 ~~p---~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~------~-~~~---~p~~r~~-~~~~~-~~ 149 (306)
T 3ii7_A 87 GPP---TP-RDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWH------T-KPS---MLTQRCS-HGMVE-AN 149 (306)
T ss_dssp CCS---SC-CBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEE------E-ECC---CSSCCBS-CEEEE-ET
T ss_pred CCC---cc-ccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceE------e-CCC---CcCCcce-eEEEE-EC
Confidence 211 11 11122332 368899887654 45888888754221 1 111 0111111 12222 36
Q ss_pred CcEEEEeCC---------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEEEcCC
Q psy13998 210 NRVIVSDSN---------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQIFTPD 275 (319)
Q Consensus 210 g~~~v~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~~~~~ 275 (319)
+++|+.+.. ...+.+||+.......+.... ..... .+++.. ++++|+.++.+ ..+.+||+.
T Consensus 150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI---EARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS---SCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETT
T ss_pred CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc---chhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCC
Confidence 788888753 356899998766655553211 11111 123332 56888887643 468899976
Q ss_pred CceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998 276 GQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN 313 (319)
Q Consensus 276 g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~ 313 (319)
...-..+... +..... .+++.. ++++|+.++.+
T Consensus 225 ~~~W~~~~~~---p~~r~~-~~~~~~-~~~i~v~GG~~ 257 (306)
T 3ii7_A 225 LNEWKMVSPM---PWKGVT-VKCAAV-GSIVYVLAGFQ 257 (306)
T ss_dssp TTEEEECCCC---SCCBSC-CEEEEE-TTEEEEEECBC
T ss_pred CCcEEECCCC---CCCccc-eeEEEE-CCEEEEEeCcC
Confidence 5544444211 111111 222222 67888888754
No 325
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=97.18 E-value=0.011 Score=49.60 Aligned_cols=115 Identities=15% Similarity=0.207 Sum_probs=69.1
Q ss_pred CCCceeEEEeC-CCeEEEEeCC---------------------CCEEEEEecCCceee-ec--Cceeeeeccc-------
Q psy13998 144 LEHPHYIAVSN-TNRVIVSDSN---------------------NHRVQIFDVNGRVFQ-SD--GTFVGKFGSM------- 191 (319)
Q Consensus 144 ~~~~~~l~~~~-~g~~~~~~~~---------------------~~~i~~~~~~~~~~~-~~--~~~~~~~~~~------- 191 (319)
..+|..++++| ++++|++.+. .|.|+.|...+.-.. .. -.+...-+..
T Consensus 383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~ 462 (592)
T 4a9v_A 383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP 462 (592)
T ss_dssp EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence 45789999998 7899998543 267887866432000 00 0111000000
Q ss_pred --C----CcCCCCCCceeEEEcCCCcEEE-EeCC-----------CCeEEEEeC-CCCEEEEeCCCCCCcccccCcceEE
Q psy13998 192 --G----NKAGQLEHPHYIAVSNTNRVIV-SDSN-----------NHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVA 252 (319)
Q Consensus 192 --~----~~~~~~~~~~~~~~~~~g~~~v-~~~~-----------~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (319)
+ .....+..|..|+++++|.||+ ++.. ++.++.+++ +|+....+. ......|++++
T Consensus 463 ~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-----~P~~aEpnGia 537 (592)
T 4a9v_A 463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-----GPIGCEVTGIS 537 (592)
T ss_dssp GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-----CCTTCEEEEEE
T ss_pred ccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-----CCCCccccCCE
Confidence 0 0112467899999999999999 6542 347888997 455443331 11234689999
Q ss_pred EcCCCc-EEEEe
Q psy13998 253 VDDQGY-ISVGD 263 (319)
Q Consensus 253 ~~~~g~-~~v~~ 263 (319)
|+||++ +||+-
T Consensus 538 fSPD~ktLfV~v 549 (592)
T 4a9v_A 538 FSPDQKTLFVGI 549 (592)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEE
Confidence 999986 55553
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.07 E-value=0.07 Score=41.59 Aligned_cols=217 Identities=9% Similarity=0.056 Sum_probs=109.7
Q ss_pred CCCcEEEEeCC----CCeEEEeccccccccceeeE--EecCc---eeeEEcCCCcEEEEcCC----C-----CeEEEEcC
Q psy13998 65 PDNSIVVADSS----NHRVQVCFPHFDLKTNCVFL--AFTWP---RGIAVGPDNSIVVADSS----N-----HRVQVFQS 126 (319)
Q Consensus 65 ~~g~~~~~~~~----~~~v~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~g~~~~~~~~----~-----~~i~~~~~ 126 (319)
-++.+++.++. -..+.+ ||..+..... .++.+ .+++.. ++.+|+.++. + ..+.+||.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEA----YNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEE----EETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEE----EcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECC
Confidence 35667776652 235667 6665544322 11111 233332 5788888765 2 46888996
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP 201 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (319)
....-..+.... .. ..-.+++.. ++++|+.++.+ ..+.+||+....-.. ... .+.....
T Consensus 98 ~~~~W~~~~~~p---~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-------~~~---~p~~r~~- 161 (308)
T 1zgk_A 98 MTNQWSPCAPMS---VP-RNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHL-------VAP---MLTRRIG- 161 (308)
T ss_dssp TTTEEEECCCCS---SC-CBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEE-------CCC---CSSCCBS-
T ss_pred CCCeEeECCCCC---cC-ccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeE-------CCC---CCccccc-
Confidence 555444432211 11 111233333 68899887632 457788877532211 100 0111111
Q ss_pred eeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEE
Q psy13998 202 HYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQI 271 (319)
Q Consensus 202 ~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~ 271 (319)
.+++.. ++++|+.+..+ +.+.+||+.......+.... ..... .+++.. ++++|+.++.+ ..+.+
T Consensus 162 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~ 235 (308)
T 1zgk_A 162 VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN---TIRSG-AGVCVL-HNCIYAAGGYDGQDQLNSVER 235 (308)
T ss_dssp CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS---SCCBS-CEEEEE-TTEEEEECCBCSSSBCCCEEE
T ss_pred eEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC---Ccccc-ceEEEE-CCEEEEEeCCCCCCccceEEE
Confidence 222222 67888887643 56899998766555543211 11111 123332 57888888753 56899
Q ss_pred EcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998 272 FTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN 313 (319)
Q Consensus 272 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~ 313 (319)
||+....-..+... +. ...-.+++. -++++|+.++.+
T Consensus 236 yd~~~~~W~~~~~~---p~-~r~~~~~~~-~~~~i~v~GG~~ 272 (308)
T 1zgk_A 236 YDVETETWTFVAPM---KH-RRSALGITV-HQGRIYVLGGYD 272 (308)
T ss_dssp EETTTTEEEECCCC---SS-CCBSCEEEE-ETTEEEEECCBC
T ss_pred EeCCCCcEEECCCC---CC-CccceEEEE-ECCEEEEEcCcC
Confidence 99765554444211 11 111122333 267888888754
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.05 E-value=0.075 Score=41.62 Aligned_cols=213 Identities=11% Similarity=0.141 Sum_probs=103.5
Q ss_pred cEEEEeCCCCeEEEeccccccccceeeE-Eec--Cc--eeeEEcCCCcEEEEcCCC----C-------eEEEEcCCCcEE
Q psy13998 68 SIVVADSSNHRVQVCFPHFDLKTNCVFL-AFT--WP--RGIAVGPDNSIVVADSSN----H-------RVQVFQSDGTFV 131 (319)
Q Consensus 68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~--~~--~~l~~~~~g~~~~~~~~~----~-------~i~~~~~~~~~~ 131 (319)
.+++.++. .+.. ||..+..... ... .+ ..-+...++.+|+.++.. + .+.+||.....-
T Consensus 17 ~i~~~GG~--~~~~----yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 17 LILLVNDT--AAVA----YDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEEECSS--EEEE----EETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred hhhhcccc--ceEE----ECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 45555442 4667 6766554333 111 11 122334567888887631 1 277888655444
Q ss_pred EEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998 132 GKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI 204 (319)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (319)
..+.... .. ..-.+++.. ++++|+.++.+ ..+.+||+....-. .. .. .+..... .++
T Consensus 91 ~~~~~~p---~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~------~~-~~---~p~~r~~-~~~ 154 (318)
T 2woz_A 91 VGLPPLP---SA-RCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS------EV-KN---LPIKVYG-HNV 154 (318)
T ss_dssp EECSCBS---SC-BCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE------EE-CC---CSSCEES-CEE
T ss_pred EECCCCC---cc-ccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEe------EC-CC---CCCcccc-cEE
Confidence 4332211 11 111233333 67888887643 34777887653221 11 00 0111111 223
Q ss_pred EEcCCCcEEEEeCC------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEEEc
Q psy13998 205 AVSNTNRVIVSDSN------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQIFT 273 (319)
Q Consensus 205 ~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~~~ 273 (319)
+. .++++|+.+.. .+.+.+||+.......+..... .... .+++. -++++|+.++.+ ..+.+||
T Consensus 155 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 155 IS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT---PRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp EE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS---CCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEE
T ss_pred EE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC---Cccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEE
Confidence 33 46788888763 2468999987665555532111 1111 12333 256888887632 4677888
Q ss_pred CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998 274 PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN 313 (319)
Q Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~ 313 (319)
+....-..+... +.. ..-.+++. -++++|+.++.+
T Consensus 229 ~~~~~W~~~~~~---p~~-r~~~~~~~-~~~~i~v~GG~~ 263 (318)
T 2woz_A 229 LKTNKWEVMTEF---PQE-RSSISLVS-LAGSLYAIGGFA 263 (318)
T ss_dssp TTTCCEEECCCC---SSC-CBSCEEEE-ETTEEEEECCBC
T ss_pred CCCCeEEECCCC---CCc-ccceEEEE-ECCEEEEECCee
Confidence 655444433211 111 11122332 356888887754
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.99 E-value=0.08 Score=41.05 Aligned_cols=180 Identities=11% Similarity=0.126 Sum_probs=92.2
Q ss_pred CCcEEEEcCCC-----CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCce
Q psy13998 108 DNSIVVADSSN-----HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRV 177 (319)
Q Consensus 108 ~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~ 177 (319)
++.+|+.++.+ ..+.+||.....-..+..... . ..-.+++. -++++|+.++.+ ..+.+||+....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~---~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD---R-RSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS---C-CBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc---c-ccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 67888887643 468889965544444332111 1 11123333 367888887643 357778876532
Q ss_pred eeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCC-------CCeEEEEeCCCCEEEEeCCCCCCcccccCcce
Q psy13998 178 FQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRG 250 (319)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (319)
-. . .... +..... .+++. -++++|+.+.. ...+.+||+.......+.... ...... +
T Consensus 136 W~------~-~~~~---p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~-~ 199 (302)
T 2xn4_A 136 WF------H-VAPM---NTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS---TRRSGA-G 199 (302)
T ss_dssp EE------E-ECCC---SSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS---SCCBSC-E
T ss_pred Ee------e-cCCC---CCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc---cccccc-c
Confidence 21 1 1110 111111 22222 26788887753 346899998766555553211 111111 2
Q ss_pred EEEcCCCcEEEEeCCC-----CEEEEEcCCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCC
Q psy13998 251 VAVDDQGYISVGDSGN-----NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314 (319)
Q Consensus 251 i~~~~~g~~~v~~~~~-----~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~ 314 (319)
++. -++++|+.++.+ +.+.+||.....-..+.... ....-.+++. -++++|+.++.++
T Consensus 200 ~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r~~~~~~~-~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 200 VGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN----MCRRNAGVCA-VNGLLYVVGGDDG 262 (302)
T ss_dssp EEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS----SCCBSCEEEE-ETTEEEEECCBCS
T ss_pred EEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC----CccccCeEEE-ECCEEEEECCcCC
Confidence 333 256888888753 47899997655444442111 1111122332 3678888887553
No 329
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.98 E-value=0.092 Score=46.72 Aligned_cols=110 Identities=10% Similarity=0.133 Sum_probs=61.1
Q ss_pred CCcceEEc-CCCcEEEEe-CCC----CeEEEeccccccccc-eeeE-Eec-CceeeEEcCCCc-EEEEcCCC----CeEE
Q psy13998 57 WPRGIAVG-PDNSIVVAD-SSN----HRVQVCFPHFDLKTN-CVFL-AFT-WPRGIAVGPDNS-IVVADSSN----HRVQ 122 (319)
Q Consensus 57 ~~~~v~~~-~~g~~~~~~-~~~----~~v~~~~~~~~~~~~-~~~~-~~~-~~~~l~~~~~g~-~~~~~~~~----~~i~ 122 (319)
...+.+++ |||++++-. ..+ ..|++ +++.++ ..+. .+. ...+++|+|||+ ++++.... ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v----~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEF----KRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEE----EETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEE----EECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 45678999 999855432 222 35888 787765 4221 111 235789999986 44443211 3677
Q ss_pred EEcCCCc---EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC---CCCEEEEEecCC
Q psy13998 123 VFQSDGT---FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NNHRVQIFDVNG 175 (319)
Q Consensus 123 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~---~~~~i~~~~~~~ 175 (319)
.++..+. ....+... ......++.+++||+.++... ....|.++++.+
T Consensus 251 ~~~lgt~~~~~~lv~~~~-----~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEH-----NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEETTSCGGGCEEEEECC-----CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEECCCCchhcEEEEecC-----CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 7775432 12222111 112235678999997654332 345677788764
No 330
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.95 E-value=0.14 Score=45.55 Aligned_cols=192 Identities=8% Similarity=0.074 Sum_probs=91.0
Q ss_pred ceeeEEc-CCCcEEE-EcCC----CCeEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEeCCCe-EEEEeCCC----CE
Q psy13998 100 PRGIAVG-PDNSIVV-ADSS----NHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNN----HR 167 (319)
Q Consensus 100 ~~~l~~~-~~g~~~~-~~~~----~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~----~~ 167 (319)
..+.+++ |||+.++ +... ...|+++|.++. .. +.. ... ....+++|+|||+ ++++.... ..
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~--~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IAD--KVS---GTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCC--CEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCc--ccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 4567999 9997443 3222 235999995433 21 100 000 1124688999984 44443221 35
Q ss_pred EEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC---CCCeEEEEeCCCC--EE--EEeCCCCC
Q psy13998 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NNHRVQIFDVNGR--VI--TSFGSEGS 240 (319)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~---~~~~i~~~~~~~~--~~--~~~~~~~~ 240 (319)
|..+++.+... ....+... .......++.++|+|+.++... ....|++++.++. .. +.+..
T Consensus 249 v~~~~lgt~~~--~~~lv~~~-------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--- 316 (751)
T 2xe4_A 249 VWRHVMGKLQS--EDVCLYEE-------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP--- 316 (751)
T ss_dssp EEEEETTSCGG--GCEEEEEC-------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC---
T ss_pred EEEEECCCCch--hcEEEEec-------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec---
Confidence 77777764210 00111110 0111234678999997554322 3457888886542 12 33311
Q ss_pred CcccccCcceEEEcCCCcEEEEeCC----CCEEEEEcCCC--ceEE-eecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998 241 EEGQLKFPRGVAVDDQGYISVGDSG----NNRIQIFTPDG--QFLR-AFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN 313 (319)
Q Consensus 241 ~~~~~~~~~~i~~~~~g~~~v~~~~----~~~i~~~~~~g--~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~ 313 (319)
........+.+...+.+|+.... ...|+.++.++ +... .+. ......+.++.+. .+.++++...+
T Consensus 317 --~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-----~~~~~~l~~~~~~-~~~lv~~~~~~ 388 (751)
T 2xe4_A 317 --REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-----HSEDVFMESIAVR-SNYLVVAGRRA 388 (751)
T ss_dssp --CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-----CCSSEEEEEEEEC-SSEEEEEEEET
T ss_pred --CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-----CCCCcEEEEEEEE-CCEEEEEEEeC
Confidence 11111233333334456665543 34788888652 2211 121 1111133445554 23566666666
Q ss_pred CeEEe
Q psy13998 314 HRIQV 318 (319)
Q Consensus 314 ~~i~v 318 (319)
+..++
T Consensus 389 g~~~l 393 (751)
T 2xe4_A 389 GLTRI 393 (751)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 65444
No 331
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.82 E-value=0.12 Score=40.24 Aligned_cols=189 Identities=11% Similarity=0.098 Sum_probs=100.6
Q ss_pred CCCcEEEEeCCC----CeEEEeccccccccceeeEE--ecCc---eeeEEcCCCcEEEEcCCC------CeEEEEcCCCc
Q psy13998 65 PDNSIVVADSSN----HRVQVCFPHFDLKTNCVFLA--FTWP---RGIAVGPDNSIVVADSSN------HRVQVFQSDGT 129 (319)
Q Consensus 65 ~~g~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~g~~~~~~~~~------~~i~~~~~~~~ 129 (319)
.++++|+.++.+ ..+.+ |+..+...... +..+ .+++.. ++++|+.++.+ ..+.+||....
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDC----YNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEE----EETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred ECCEEEEEeCCCCCCcceEEE----EeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 367888887644 57777 77765543322 1211 223322 67888887654 46889996554
Q ss_pred EEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC---------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCC
Q psy13998 130 FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN---------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH 200 (319)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (319)
.-..+.... .. ..-.+++. .++++|+.++. ...+.+||+....-. . ... .+.....
T Consensus 129 ~W~~~~~~p---~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~------~-~~~---~p~~r~~ 193 (306)
T 3ii7_A 129 SWHTKPSML---TQ-RCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT------E-LCP---MIEARKN 193 (306)
T ss_dssp EEEEECCCS---SC-CBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE------E-ECC---CSSCCBS
T ss_pred ceEeCCCCc---CC-cceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE------E-CCC---ccchhhc
Confidence 433332211 11 11122333 36788888753 355788888754221 1 110 0111111
Q ss_pred ceeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-----CCEEE
Q psy13998 201 PHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-----NNRIQ 270 (319)
Q Consensus 201 ~~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-----~~~i~ 270 (319)
.+++.. ++++|+.+..+ ..+.+||+.......+.... ...... +++.. ++++|+.++. ...+.
T Consensus 194 -~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~ 266 (306)
T 3ii7_A 194 -HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP---WKGVTV-KCAAV-GSIVYVLAGFQGVGRLGHIL 266 (306)
T ss_dssp -CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS---CCBSCC-EEEEE-TTEEEEEECBCSSSBCCEEE
T ss_pred -ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC---CCccce-eEEEE-CCEEEEEeCcCCCeeeeeEE
Confidence 223332 67888887642 46899998766555553211 111112 22332 5688998874 36789
Q ss_pred EEcCCCceEE
Q psy13998 271 IFTPDGQFLR 280 (319)
Q Consensus 271 ~~~~~g~~~~ 280 (319)
+||+....-.
T Consensus 267 ~yd~~~~~W~ 276 (306)
T 3ii7_A 267 EYNTETDKWV 276 (306)
T ss_dssp EEETTTTEEE
T ss_pred EEcCCCCeEE
Confidence 9997654433
No 332
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.69 E-value=0.14 Score=39.55 Aligned_cols=188 Identities=12% Similarity=0.144 Sum_probs=98.2
Q ss_pred CCCcEEEEeCCC-----CeEEEeccccccccce---eeE--EecCc---eeeEEcCCCcEEEEcCCC-----CeEEEEcC
Q psy13998 65 PDNSIVVADSSN-----HRVQVCFPHFDLKTNC---VFL--AFTWP---RGIAVGPDNSIVVADSSN-----HRVQVFQS 126 (319)
Q Consensus 65 ~~g~~~~~~~~~-----~~v~~~~~~~~~~~~~---~~~--~~~~~---~~l~~~~~g~~~~~~~~~-----~~i~~~~~ 126 (319)
.++++|+.++.+ ..+.+ ++..+.. ... .+..+ .+++.. ++++|+.++.+ ..+.+||.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~----~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVEC----LDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDP 135 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEE----EETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEET
T ss_pred ECCEEEEEcCCCCCccCceEEE----EECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcC
Confidence 367888887643 46778 7766544 222 11111 223332 57888887643 46889995
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP 201 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (319)
....-..+... ... ..-.+++. .++++|+.++.+ ..+.+||+....-. .. .. .+......
T Consensus 136 ~~~~W~~~~~~---p~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~------~~-~~---~p~~r~~~ 200 (301)
T 2vpj_A 136 NIDQWSMLGDM---QTA-REGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWT------NV-TP---MATKRSGA 200 (301)
T ss_dssp TTTEEEEEEEC---SSC-CBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEE------EE-CC---CSSCCBSC
T ss_pred CCCeEEECCCC---CCC-cccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEE------eC-CC---CCcccccc
Confidence 54433333211 111 11123333 368899887643 45888888754221 11 10 01111111
Q ss_pred eeEEEcCCCcEEEEeCC-----CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEE
Q psy13998 202 HYIAVSNTNRVIVSDSN-----NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQI 271 (319)
Q Consensus 202 ~~~~~~~~g~~~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~ 271 (319)
. ++. -++++|+.+.. ...+.+||+.......+..... .... .+++.. ++++|+.++.+ ..+.+
T Consensus 201 ~-~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~ 273 (301)
T 2vpj_A 201 G-VAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT---PRCY-VGATVL-RGRLYAIAGYDGNSLLSSIEC 273 (301)
T ss_dssp E-EEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS---CCBS-CEEEEE-TTEEEEECCBCSSSBEEEEEE
T ss_pred e-EEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC---cccc-eeEEEE-CCEEEEEcCcCCCcccccEEE
Confidence 2 222 25788888764 3578999987666555532111 1111 122322 56888888754 46788
Q ss_pred EcCCCceE
Q psy13998 272 FTPDGQFL 279 (319)
Q Consensus 272 ~~~~g~~~ 279 (319)
||+....-
T Consensus 274 yd~~~~~W 281 (301)
T 2vpj_A 274 YDPIIDSW 281 (301)
T ss_dssp EETTTTEE
T ss_pred EcCCCCeE
Confidence 88654433
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.60 E-value=0.2 Score=39.94 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=48.1
Q ss_pred CCcEEEEeCC-CCeEEEecccccccc-ceeeEEe---c-Cc---eeeEEcCCCcEEEEcCC-C---------CeEEEEcC
Q psy13998 66 DNSIVVADSS-NHRVQVCFPHFDLKT-NCVFLAF---T-WP---RGIAVGPDNSIVVADSS-N---------HRVQVFQS 126 (319)
Q Consensus 66 ~g~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~~~---~-~~---~~l~~~~~g~~~~~~~~-~---------~~i~~~~~ 126 (319)
++++|+.++. ...+.+ ++..+ ...+..+ . .+ .+++.. ++++|+.++. + ..+.+||.
T Consensus 19 ~~~iyv~GG~~~~~~~~----~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~ 93 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYK----LDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNP 93 (357)
T ss_dssp TTEEEEECGGGTTCEEE----EETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred CCEEEEEeCcCCCeEEE----EccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeC
Confidence 6788887753 346777 66643 1223322 2 12 223332 5788888765 1 46888996
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 165 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~ 165 (319)
....-..+.... + ....-.+++. .++++|+.++.+
T Consensus 94 ~~~~W~~~~~~~--p-~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 94 KTNSWVKLMSHA--P-MGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTTEEEECSCCC--S-SCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCCcEEECCCCC--C-cccccceEEE-ECCEEEEEeCcC
Confidence 554434333221 0 1111123333 578999988753
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.60 E-value=0.18 Score=39.39 Aligned_cols=212 Identities=11% Similarity=0.095 Sum_probs=104.7
Q ss_pred EEEEeCCCCeEEEeccccccccceeeE-EecCc----eeeEEcCCCcEEEEcCC-----C------CeEEEEcCCCcEEE
Q psy13998 69 IVVADSSNHRVQVCFPHFDLKTNCVFL-AFTWP----RGIAVGPDNSIVVADSS-----N------HRVQVFQSDGTFVG 132 (319)
Q Consensus 69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~----~~l~~~~~g~~~~~~~~-----~------~~i~~~~~~~~~~~ 132 (319)
+++.++ ..+.. ||..+..... .++.| ...+...++++|+.++. . ..+.+||.....-.
T Consensus 7 l~~~GG--~~~~~----yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVA----YDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEE----EETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEE----ECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 455555 56778 7776655332 22111 12233346788887762 1 13778886554433
Q ss_pred EecCCCccCCCCCCceeEEEeCCCeEEEEeCCC--------CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeE
Q psy13998 133 KFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN--------HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI 204 (319)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (319)
.+.... .. ..-.+++.. ++++|+.++.+ +.+.+||+....-. . ... .+..... .++
T Consensus 81 ~~~~~p---~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~------~-~~~---~p~~r~~-~~~ 144 (315)
T 4asc_A 81 GMPPLP---SP-RCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG------E-SDP---LPYVVYG-HTV 144 (315)
T ss_dssp ECCCBS---SC-EESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE------E-CCC---CSSCCBS-CEE
T ss_pred ECCCCC---cc-hhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe------E-CCC---CCCcccc-eeE
Confidence 332111 00 111233333 67888887632 45788888753221 1 100 0111111 222
Q ss_pred EEcCCCcEEEEeCC------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCCC-----EEEEEc
Q psy13998 205 AVSNTNRVIVSDSN------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN-----RIQIFT 273 (319)
Q Consensus 205 ~~~~~g~~~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~~-----~i~~~~ 273 (319)
+. .++++|+.+.. .+.+.+||+....-..+.... ...... +++. -++++|+.++.++ .+.+||
T Consensus 145 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 145 LS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ---TARSLF-GATV-HDGRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp EE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS---SCCBSC-EEEE-ETTEEEEEEEECSSSEEEEEEEEE
T ss_pred EE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC---Cchhce-EEEE-ECCEEEEEeccCCCCccceEEEEE
Confidence 22 46688888765 246899998766555543211 111111 2222 2568888876433 688899
Q ss_pred CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998 274 PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN 313 (319)
Q Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~ 313 (319)
+....-..+... + ....-.+++. -++++|+.++.+
T Consensus 219 ~~~~~W~~~~~~---p-~~r~~~~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 219 ITDNKWAPFEAF---P-QERSSLSLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp TTTTEEEEECCC---S-SCCBSCEEEE-ETTEEEEEEEEE
T ss_pred CCCCeEEECCCC---C-CcccceeEEE-ECCEEEEECCcc
Confidence 765544444211 1 1111122333 366888887653
No 335
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.46 E-value=0.42 Score=42.10 Aligned_cols=193 Identities=10% Similarity=0.079 Sum_probs=97.5
Q ss_pred CCCcEEEEcCCC----CeEEEEcCCCcEEEEec-C-CCccCCCCCCceeEEEeC-CCeEEEEeCCC------CEEEEEec
Q psy13998 107 PDNSIVVADSSN----HRVQVFQSDGTFVGKFG-S-MGNKAGQLEHPHYIAVSN-TNRVIVSDSNN------HRVQIFDV 173 (319)
Q Consensus 107 ~~g~~~~~~~~~----~~i~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~------~~i~~~~~ 173 (319)
.++.+|+.++.+ ..+.+||.....-..+. . +.........-++++... ++++|+.++.+ +.+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467788887642 46888984333222222 1 000000111224455554 78999987643 35778887
Q ss_pred CCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeCCCC--eEEEEeCCCCEEEEeCCCCCCcccccCcceE
Q psy13998 174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH--RVQIFDVNGRVITSFGSEGSEEGQLKFPRGV 251 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (319)
....-. .. . ..+. ...-.+.+.-.++++|+.++.++ .+.+||+.......+...+..+........+
T Consensus 476 ~t~~W~------~~-~---~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~ 544 (695)
T 2zwa_A 476 KTREWS------MI-K---SLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL 544 (695)
T ss_dssp TTTEEE------EC-C---CCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE
T ss_pred CCCcEE------EC-C---CCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEE
Confidence 753211 11 0 0011 11112334434788999877543 6999998766655553221111111122335
Q ss_pred EEcCC-CcEEEEeCC-------CCEEEEEcCCCce------EEeecccCCCCCCCCCcceEEEccCCcEEEEeCCC
Q psy13998 252 AVDDQ-GYISVGDSG-------NNRIQIFTPDGQF------LRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDREN 313 (319)
Q Consensus 252 ~~~~~-g~~~v~~~~-------~~~i~~~~~~g~~------~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~ 313 (319)
+++.+ +++|+.++. .+.+.+||+.... ...+... ......-.+++...++++|+.++.+
T Consensus 545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~---p~~~R~~~~~~~~~~~~iyv~GG~~ 617 (695)
T 2zwa_A 545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH---PLFQRYGSQIKYITPRKLLIVGGTS 617 (695)
T ss_dssp EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC---GGGCCBSCEEEEEETTEEEEECCBC
T ss_pred EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC---CCCCcccceEEEeCCCEEEEECCcc
Confidence 65655 789998875 2568999954433 2222110 0011112234444447888888743
No 336
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=96.41 E-value=0.13 Score=43.99 Aligned_cols=108 Identities=16% Similarity=0.302 Sum_probs=68.2
Q ss_pred CCCCceeEEEcC-CCcEEEEeCC---------------------CCeEEEEeCCCC-----E----EEEeC-CCC-----
Q psy13998 197 QLEHPHYIAVSN-TNRVIVSDSN---------------------NHRVQIFDVNGR-----V----ITSFG-SEG----- 239 (319)
Q Consensus 197 ~~~~~~~~~~~~-~g~~~v~~~~---------------------~~~i~~~~~~~~-----~----~~~~~-~~~----- 239 (319)
.+..|-++.++| ++.+|++... .|.|+.|.+++. . +..+. ...
T Consensus 382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~ 461 (592)
T 3zwu_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence 456778899997 6788887653 267888874321 1 11111 100
Q ss_pred --------CCcccccCcceEEEcCCCcEEEEeCCC------------CEEEEEcCC-CceEEeecccCCCCCCCCCcceE
Q psy13998 240 --------SEEGQLKFPRGVAVDDQGYISVGDSGN------------NRIQIFTPD-GQFLRAFGCWGSGDGEFKGLEGV 298 (319)
Q Consensus 240 --------~~~~~~~~~~~i~~~~~g~~~v~~~~~------------~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~l 298 (319)
.....+..|..|+|++.|++|++...+ +.+...++. |++.+.+.. .....++++
T Consensus 462 ~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-----P~gaE~TG~ 536 (592)
T 3zwu_A 462 PKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-----PIGCEVTGI 536 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-----CTTCEEEEE
T ss_pred ccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-----CCCccCcCe
Confidence 012246789999999999999987643 467777754 555444421 123468999
Q ss_pred EEccCCc-EEEE
Q psy13998 299 AVMSNGN-ILVC 309 (319)
Q Consensus 299 ~~~~~g~-~~v~ 309 (319)
+|+||++ +|+.
T Consensus 537 ~fspDg~tlfvn 548 (592)
T 3zwu_A 537 SFSPDQKTLFVG 548 (592)
T ss_dssp EECTTSSEEEEE
T ss_pred eECCCCCEEEEE
Confidence 9999998 4443
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.36 E-value=0.28 Score=39.00 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=27.3
Q ss_pred CCcEEEEeCC-C---------CeEEEeccccccccceeeE--Eec-Cc---eeeEEcCCCcEEEEcCCC
Q psy13998 66 DNSIVVADSS-N---------HRVQVCFPHFDLKTNCVFL--AFT-WP---RGIAVGPDNSIVVADSSN 118 (319)
Q Consensus 66 ~g~~~~~~~~-~---------~~v~~~~~~~~~~~~~~~~--~~~-~~---~~l~~~~~g~~~~~~~~~ 118 (319)
++++|+.++. + ..+.+ ||..+..... ... .+ .+++. .++++|+.++.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~----yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHK----YNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEE----EETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEE----EeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 6788888765 1 35777 7776544332 111 11 22333 467888887643
No 338
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.20 E-value=0.31 Score=37.96 Aligned_cols=193 Identities=14% Similarity=0.121 Sum_probs=97.7
Q ss_pred EEcCCCcEEEEeCC-----C------CeEEEeccccccccceeeE--EecCc---eeeEEcCCCcEEEEcCCC-------
Q psy13998 62 AVGPDNSIVVADSS-----N------HRVQVCFPHFDLKTNCVFL--AFTWP---RGIAVGPDNSIVVADSSN------- 118 (319)
Q Consensus 62 ~~~~~g~~~~~~~~-----~------~~v~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~g~~~~~~~~~------- 118 (319)
+...++++|+.++. . ..+.+ ||..+..... .++.+ .+++.. ++++|+.++.+
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~ 115 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQ----FDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERC 115 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEE----EETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCB
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEE----ecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcc
Confidence 33457788887762 1 12666 6766544322 11222 223332 57888887632
Q ss_pred -CeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC------CCEEEEEecCCceeeecCceeeeeccc
Q psy13998 119 -HRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------NHRVQIFDVNGRVFQSDGTFVGKFGSM 191 (319)
Q Consensus 119 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~ 191 (319)
..+.+||.....-..+... +.. ..-.+++. .++++|+.++. .+.+.+||+....-. . ...
T Consensus 116 ~~~~~~~d~~~~~W~~~~~~---p~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~------~-~~~- 182 (315)
T 4asc_A 116 LDSVMCYDRLSFKWGESDPL---PYV-VYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK------E-LAP- 182 (315)
T ss_dssp CCCEEEEETTTTEEEECCCC---SSC-CBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEE------E-CCC-
T ss_pred cceEEEECCCCCcEeECCCC---CCc-ccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEE------E-CCC-
Confidence 4688999655443333211 111 11122333 46789988765 246888888754221 1 100
Q ss_pred CCcCCCCCCceeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC
Q psy13998 192 GNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN 266 (319)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~ 266 (319)
.+....... ++. -++++|+.+..+ ..+.+||+....-..+..... .... .+++.. ++++|+.++.+
T Consensus 183 --~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~-~~~~~~-~~~l~v~GG~~ 253 (315)
T 4asc_A 183 --MQTARSLFG-ATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ---ERSS-LSLVSL-VGTLYAIGGFA 253 (315)
T ss_dssp --CSSCCBSCE-EEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS---CCBS-CEEEEE-TTEEEEEEEEE
T ss_pred --CCCchhceE-EEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC---cccc-eeEEEE-CCEEEEECCcc
Confidence 011111122 222 266888877543 368899987666555532111 1111 123332 56888887643
Q ss_pred --------------CEEEEEcCCCceEEe
Q psy13998 267 --------------NRIQIFTPDGQFLRA 281 (319)
Q Consensus 267 --------------~~i~~~~~~g~~~~~ 281 (319)
+.+.+||+....-..
T Consensus 254 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 282 (315)
T 4asc_A 254 TLETESGELVPTELNDIWRYNEEEKKWEG 282 (315)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred ccCcCCccccccccCcEEEecCCCChhhh
Confidence 347788876544333
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.16 E-value=0.32 Score=37.77 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=99.3
Q ss_pred CCcEEEEeCC----C-----CeEEEeccccccccceeeEE--ecCc---eeeEEcCCCcEEEEcCCC-----CeEEEEcC
Q psy13998 66 DNSIVVADSS----N-----HRVQVCFPHFDLKTNCVFLA--FTWP---RGIAVGPDNSIVVADSSN-----HRVQVFQS 126 (319)
Q Consensus 66 ~g~~~~~~~~----~-----~~v~~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~g~~~~~~~~~-----~~i~~~~~ 126 (319)
++++|+.++. + ..+.+ ||..+...... +..+ .+++.. ++++|+.++.+ ..+.+||.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~ 144 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDC----YNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEP 144 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEE----EETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEET
T ss_pred CCEEEEECCCcCCCCCCeecceEEE----ECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECC
Confidence 6788888765 2 35667 67665443221 1111 223332 67888887632 46888996
Q ss_pred CCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCCC-----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCc
Q psy13998 127 DGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHP 201 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (319)
....-..+... ... ..-.+++.. ++++|+.++.+ ..+.+||+....-... .. .+.....
T Consensus 145 ~~~~W~~~~~~---p~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-------~~---~p~~r~~- 208 (308)
T 1zgk_A 145 ERDEWHLVAPM---LTR-RIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-------TA---MNTIRSG- 208 (308)
T ss_dssp TTTEEEECCCC---SSC-CBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-------CC---CSSCCBS-
T ss_pred CCCeEeECCCC---Ccc-ccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-------CC---CCCcccc-
Confidence 55443333211 111 111233333 68899887643 4588888875422111 00 0111111
Q ss_pred eeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCC-----CCEEEE
Q psy13998 202 HYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSG-----NNRIQI 271 (319)
Q Consensus 202 ~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~-----~~~i~~ 271 (319)
.+++.. ++++|+.+..+ ..+.+||+.......+.... ..... .+++.. ++++|+.++. ...+.+
T Consensus 209 ~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~ 282 (308)
T 1zgk_A 209 AGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK---HRRSA-LGITVH-QGRIYVLGGYDGHTFLDSVEC 282 (308)
T ss_dssp CEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS---SCCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEE
T ss_pred ceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC---CCccc-eEEEEE-CCEEEEEcCcCCCcccceEEE
Confidence 223332 67888887643 56999998766655553211 11111 123332 5688888764 356888
Q ss_pred EcCCCceEEee
Q psy13998 272 FTPDGQFLRAF 282 (319)
Q Consensus 272 ~~~~g~~~~~~ 282 (319)
||+....-..+
T Consensus 283 yd~~~~~W~~~ 293 (308)
T 1zgk_A 283 YDPDTDTWSEV 293 (308)
T ss_dssp EETTTTEEEEE
T ss_pred EcCCCCEEeec
Confidence 88765444333
No 340
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.06 E-value=0.36 Score=37.34 Aligned_cols=190 Identities=10% Similarity=0.104 Sum_probs=99.8
Q ss_pred CCcEEEEeCCC-----CeEEEeccccccccceeeEE--ecCc---eeeEEcCCCcEEEEcCCC-----CeEEEEcCCCcE
Q psy13998 66 DNSIVVADSSN-----HRVQVCFPHFDLKTNCVFLA--FTWP---RGIAVGPDNSIVVADSSN-----HRVQVFQSDGTF 130 (319)
Q Consensus 66 ~g~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~g~~~~~~~~~-----~~i~~~~~~~~~ 130 (319)
++++|+.++.+ ..+.+ ||..+...... +..+ .+++.. ++++|+.++.+ ..+.+||.....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDS----YDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEE----EETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEE----ECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 67888887643 35777 77765543321 1111 233332 57888877543 357888865544
Q ss_pred EEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC-------CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCcee
Q psy13998 131 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN-------NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY 203 (319)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (319)
-..+.... .. ..-.+++. -++++|+.++. ...+.+||+....-. .. .. .+..... .+
T Consensus 136 W~~~~~~p---~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~------~~-~~---~p~~r~~-~~ 199 (302)
T 2xn4_A 136 WFHVAPMN---TR-RSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT------YI-AE---MSTRRSG-AG 199 (302)
T ss_dssp EEEECCCS---SC-CBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE------EE-CC---CSSCCBS-CE
T ss_pred EeecCCCC---Cc-ccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE------EC-CC---Ccccccc-cc
Confidence 33332211 11 11123333 36788888753 245788888754221 11 00 0111111 12
Q ss_pred EEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC-----CEEEEEc
Q psy13998 204 IAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-----NRIQIFT 273 (319)
Q Consensus 204 ~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-----~~i~~~~ 273 (319)
++. -++++|+.+..+ +.+.+||+.......+..... .. .. .+++. -++++|+.++.+ ..+.+||
T Consensus 200 ~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~r-~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd 273 (302)
T 2xn4_A 200 VGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM--CR-RN-AGVCA-VNGLLYVVGGDDGSCNLASVEYYN 273 (302)
T ss_dssp EEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--CC-BS-CEEEE-ETTEEEEECCBCSSSBCCCEEEEE
T ss_pred EEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--cc-cc-CeEEE-ECCEEEEECCcCCCcccccEEEEc
Confidence 222 257888887643 468999987666555532211 11 11 12333 257888888754 3589999
Q ss_pred CCCceEEee
Q psy13998 274 PDGQFLRAF 282 (319)
Q Consensus 274 ~~g~~~~~~ 282 (319)
+....-..+
T Consensus 274 ~~~~~W~~~ 282 (302)
T 2xn4_A 274 PTTDKWTVV 282 (302)
T ss_dssp TTTTEEEEC
T ss_pred CCCCeEEEC
Confidence 765554444
No 341
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=95.86 E-value=0.18 Score=43.07 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=67.0
Q ss_pred CCCCceeEEEeC-CCeEEEEeCC---------------------CCEEEEEecCCceeeecCceee---eecc-------
Q psy13998 143 QLEHPHYIAVSN-TNRVIVSDSN---------------------NHRVQIFDVNGRVFQSDGTFVG---KFGS------- 190 (319)
Q Consensus 143 ~~~~~~~l~~~~-~g~~~~~~~~---------------------~~~i~~~~~~~~~~~~~~~~~~---~~~~------- 190 (319)
.+.++..+.++| ++++|++.+. .|.|..|..++..... ..+.. ....
T Consensus 382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a-~~f~w~~~v~~g~p~~~~~ 460 (592)
T 3zwu_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHAS-KTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTC-SEEEEEEEEECCCTTTSTT
T ss_pred EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCcccc-ceeEEEEEEeccCcccccc
Confidence 356788999997 7899988653 2567777654321000 00000 0000
Q ss_pred -------cCCcCCCCCCceeEEEcCCCcEEEEeCC------------CCeEEEEeCCCCEEEEeCCCCCCcccccCcceE
Q psy13998 191 -------MGNKAGQLEHPHYIAVSNTNRVIVSDSN------------NHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGV 251 (319)
Q Consensus 191 -------~~~~~~~~~~~~~~~~~~~g~~~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (319)
.......+..|-.|+|++.|+||++... ++.+..+++....++.+.... ....++++
T Consensus 461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P----~gaE~TG~ 536 (592)
T 3zwu_A 461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP----IGCEVTGI 536 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC----TTCEEEEE
T ss_pred cccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC----CCccCcCe
Confidence 0001234668899999999999987643 346777776533344442211 12457899
Q ss_pred EEcCCCcEEEE
Q psy13998 252 AVDDQGYISVG 262 (319)
Q Consensus 252 ~~~~~g~~~v~ 262 (319)
+|+||++.++.
T Consensus 537 ~fspDg~tlfv 547 (592)
T 3zwu_A 537 SFSPDQKTLFV 547 (592)
T ss_dssp EECTTSSEEEE
T ss_pred eECCCCCEEEE
Confidence 99999864444
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.61 E-value=0.59 Score=36.44 Aligned_cols=189 Identities=12% Similarity=0.109 Sum_probs=94.6
Q ss_pred EcCCCcEEEEeCC----CC-------eEEEeccccccccceeeE--EecCc---eeeEEcCCCcEEEEcCCC-------C
Q psy13998 63 VGPDNSIVVADSS----NH-------RVQVCFPHFDLKTNCVFL--AFTWP---RGIAVGPDNSIVVADSSN-------H 119 (319)
Q Consensus 63 ~~~~g~~~~~~~~----~~-------~v~~~~~~~~~~~~~~~~--~~~~~---~~l~~~~~g~~~~~~~~~-------~ 119 (319)
...++++|+.++. ++ .+.+ +|..+..... .+..+ .+++.. ++++|+.++.+ .
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~----~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 127 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQ----LDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLD 127 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEE----EETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEE----EeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccc
Confidence 3457888888772 11 2666 6665444322 11222 233333 57888887643 3
Q ss_pred eEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeCC------CCEEEEEecCCceeeecCceeeeecccCC
Q psy13998 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN------NHRVQIFDVNGRVFQSDGTFVGKFGSMGN 193 (319)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (319)
.+.+||.....-..+... ... ..-.+++. .++++|+.++. .+.+.+||+....-. .. ...
T Consensus 128 ~~~~yd~~~~~W~~~~~~---p~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~------~~-~~~-- 193 (318)
T 2woz_A 128 SVLCYDPVAAKWSEVKNL---PIK-VYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK------DL-APM-- 193 (318)
T ss_dssp EEEEEETTTTEEEEECCC---SSC-EESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEE------EE-CCC--
T ss_pred eEEEEeCCCCCEeECCCC---CCc-ccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE------EC-CCC--
Confidence 588888655443333211 100 11122333 46889988763 245888888754221 11 100
Q ss_pred cCCCCCCceeEEEcCCCcEEEEeCCC-----CeEEEEeCCCCEEEEeCCCCCCcccccCcceEEEcCCCcEEEEeCCC--
Q psy13998 194 KAGQLEHPHYIAVSNTNRVIVSDSNN-----HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN-- 266 (319)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~v~~~~~-- 266 (319)
+..... .+++. -++++|+.+..+ ..+.+||+.......+..... .... .+++. -++++|+.++.+
T Consensus 194 -p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~-~~~~~-~~~~i~v~GG~~~~ 265 (318)
T 2woz_A 194 -KTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ---ERSS-ISLVS-LAGSLYAIGGFAMI 265 (318)
T ss_dssp -SSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS---CCBS-CEEEE-ETTEEEEECCBCCB
T ss_pred -CCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC---cccc-eEEEE-ECCEEEEECCeecc
Confidence 111111 22333 256888876532 467889976655444422111 1111 12332 356888887643
Q ss_pred ------------CEEEEEcCCCce
Q psy13998 267 ------------NRIQIFTPDGQF 278 (319)
Q Consensus 267 ------------~~i~~~~~~g~~ 278 (319)
..+.+||+....
T Consensus 266 ~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 266 QLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp C----CCBCCBCCCEEEEETTTTE
T ss_pred CCCCceeccceeeeEEEEeCCCCE
Confidence 457888865443
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.60 E-value=0.013 Score=48.94 Aligned_cols=77 Identities=9% Similarity=0.120 Sum_probs=53.5
Q ss_pred CCceeEEEeCCCeEEEE-eCCCCEEEEEecCCcee-------eecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEe
Q psy13998 145 EHPHYIAVSNTNRVIVS-DSNNHRVQIFDVNGRVF-------QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 216 (319)
Q Consensus 145 ~~~~~l~~~~~g~~~~~-~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~ 216 (319)
..|+++.++|||++++. +..+.++.+++.+...- .+....... ...-..|...+|+++|+.|.+-
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-------~e~GlGPlHt~Fd~~G~aYTtl 395 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-------PELGLGPLHTTFDGRGNAYTTL 395 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-------CBCCSCEEEEEECSSSEEEEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-------ccCCCcccEEEECCCCceEeee
Confidence 57899999999977665 45678899998863110 111111111 1123467889999999999999
Q ss_pred CCCCeEEEEeCC
Q psy13998 217 SNNHRVQIFDVN 228 (319)
Q Consensus 217 ~~~~~i~~~~~~ 228 (319)
.-+..|..|+.+
T Consensus 396 fidSqvvkWni~ 407 (638)
T 3sbq_A 396 FIDSQVVKWNME 407 (638)
T ss_dssp TTTTEEEEEEHH
T ss_pred eecceEEEEecc
Confidence 999999999954
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.12 Score=40.87 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=38.4
Q ss_pred CCcEEEEc-CCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeE----EE-e----CCCeEEEEeCCCCEEEEEecCCc
Q psy13998 108 DNSIVVAD-SSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYI----AV-S----NTNRVIVSDSNNHRVQIFDVNGR 176 (319)
Q Consensus 108 ~g~~~~~~-~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l----~~-~----~~g~~~~~~~~~~~i~~~~~~~~ 176 (319)
++.+++.. ..++.++.++ .+|.....+..+... ...|... .+ + ..+..+++++.++++..+|+.
T Consensus 55 ~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv---~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~-- 129 (339)
T 2be1_A 55 TYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV---STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML-- 129 (339)
T ss_dssp SSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH---TTCSEEEECC----------CCEEEEECEEEEEEEEEETT--
T ss_pred CCcEEEEEECCCCEEEEEECCCCcEEeeeccccce---eccccccCCCceeecccccccCCEEEEEecCCEEEEEECC--
Confidence 34566665 5789999999 556444433221110 0111110 01 0 034455566778888888876
Q ss_pred eeeecCceeeeec
Q psy13998 177 VFQSDGTFVGKFG 189 (319)
Q Consensus 177 ~~~~~~~~~~~~~ 189 (319)
.|+.+..+.
T Consensus 130 ----tG~~~W~~~ 138 (339)
T 2be1_A 130 ----NGEIISAFG 138 (339)
T ss_dssp ----TCCEEEEES
T ss_pred ----CCcEEEEEe
Confidence 345655553
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.38 Score=37.92 Aligned_cols=114 Identities=13% Similarity=0.197 Sum_probs=60.0
Q ss_pred cEEEEcCCCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEE---EeCCCeEEEEe-CCCCEEEEEecCCceeeecCce
Q psy13998 110 SIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIA---VSNTNRVIVSD-SNNHRVQIFDVNGRVFQSDGTF 184 (319)
Q Consensus 110 ~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~g~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 184 (319)
.+++.++.++.|+.+| .+|+....+.... ...+.... ...++..++.. ..+|.+..++..+. ..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-----~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G------~~ 79 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-----FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG------LQ 79 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG-----SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE------EE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc-----cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC------cE
Confidence 3455566788999999 7888888875430 01111100 00234566555 57888888876532 11
Q ss_pred eeeecccCCcCCCCCCcee----EEE-cC----CCcEEEEeCCCCeEEEEe-CCCCEEEEeCC
Q psy13998 185 VGKFGSMGNKAGQLEHPHY----IAV-SN----TNRVIVSDSNNHRVQIFD-VNGRVITSFGS 237 (319)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~----~~~-~~----~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~ 237 (319)
...+...... ...|.. ..+ ++ .+..+++++.+++++.+| .+|+.+..+..
T Consensus 80 ~~~~~~~~lv---~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 80 KLPLSIRQLV---STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEEEEHHHHH---TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred Eeeeccccce---eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1111110000 011111 011 11 344566677789999999 47888888753
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.16 E-value=0.025 Score=47.37 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=50.2
Q ss_pred CCCcceEEcCCCcEEEE-eCCCCeEEEeccccccccc------ee-------eEE---ecCceeeEEcCCCcEEEEcCCC
Q psy13998 56 TWPRGIAVGPDNSIVVA-DSSNHRVQVCFPHFDLKTN------CV-------FLA---FTWPRGIAVGPDNSIVVADSSN 118 (319)
Q Consensus 56 ~~~~~v~~~~~g~~~~~-~~~~~~v~~~~~~~~~~~~------~~-------~~~---~~~~~~l~~~~~g~~~~~~~~~ 118 (319)
..|+++.++|||++++. +-.+.++.+ ++..+. +. ..+ -..|...+|+++|+.|.+-.-+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV----~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfid 398 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSM----IAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFID 398 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEE----EEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEE----EEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeec
Confidence 78999999999996555 456788888 655421 11 111 1267889999999999998889
Q ss_pred CeEEEEcC
Q psy13998 119 HRVQVFQS 126 (319)
Q Consensus 119 ~~i~~~~~ 126 (319)
..|..|+.
T Consensus 399 SqvvkWni 406 (638)
T 3sbq_A 399 SQVVKWNM 406 (638)
T ss_dssp TEEEEEEH
T ss_pred ceEEEEec
Confidence 99999983
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.06 E-value=1.9 Score=34.75 Aligned_cols=192 Identities=11% Similarity=0.012 Sum_probs=91.8
Q ss_pred CCCcceEEcC--CCcEEEEeCCC--C-eEEEeccccccccceeeEEe------------------cCceeeEEcC---CC
Q psy13998 56 TWPRGIAVGP--DNSIVVADSSN--H-RVQVCFPHFDLKTNCVFLAF------------------TWPRGIAVGP---DN 109 (319)
Q Consensus 56 ~~~~~v~~~~--~g~~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~---~g 109 (319)
..+.+|+++| ++.+|+..... + .|.. .+- .+..+..+ ..+.++++++ .+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~----s~D-~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 129 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFR----SDD-GGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG 129 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEE----ESS-TTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEE----eCC-CCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence 4578999998 67788775432 1 4544 111 01111111 1244678876 45
Q ss_pred cEEEEcCCCCeEEEEcCCCcEEEEecCCC-cc------------CCCCCCceeEEEeC--CCeEEEEeCCCCEEEEEecC
Q psy13998 110 SIVVADSSNHRVQVFQSDGTFVGKFGSMG-NK------------AGQLEHPHYIAVSN--TNRVIVSDSNNHRVQIFDVN 174 (319)
Q Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~l~~~~--~g~~~~~~~~~~~i~~~~~~ 174 (319)
.+|+.. ..+.|++.+..|+.-..+.... .. ......+..|.++| .+.+|+... .+.+.+.+-.
T Consensus 130 ~l~~g~-~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~Dg 207 (394)
T 3b7f_A 130 TWYAGT-SPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDA 207 (394)
T ss_dssp CEEEEE-ETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESST
T ss_pred EEEEEe-cCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCC
Confidence 666654 3456777765555433321100 00 00112456888887 356776543 3445554433
Q ss_pred CceeeecCceeeeecc-cC-CcC----CCCCCceeEEEcCC--CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCccccc
Q psy13998 175 GRVFQSDGTFVGKFGS-MG-NKA----GQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLK 246 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~-~~-~~~----~~~~~~~~~~~~~~--g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 246 (319)
|+... ..... .. ..+ .....+..|++++. +.+|+.. .+.|++.+..|+....+... .......
T Consensus 208 G~tW~------~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G~tW~~~~~~-l~~~~~~ 278 (394)
T 3b7f_A 208 GTDWK------PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRREGVWKRIGDA-MPREVGD 278 (394)
T ss_dssp TSSCE------ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTTTEEECGGGG-SCTTTCS
T ss_pred CCCce------ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCCCcceECCCC-CCCCCcc
Confidence 32111 11000 00 000 00123677888886 5666654 34577777666655544210 0000001
Q ss_pred CcceEEEcCC--CcEEEEe
Q psy13998 247 FPRGVAVDDQ--GYISVGD 263 (319)
Q Consensus 247 ~~~~i~~~~~--g~~~v~~ 263 (319)
....++++|. +.+|+..
T Consensus 279 ~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 279 IGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp CEEEEEECSSCTTCEEEEE
T ss_pred ceEEEEECCCCCCEEEEEe
Confidence 2346788753 5688764
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.96 E-value=6.6 Score=31.61 Aligned_cols=203 Identities=10% Similarity=-0.006 Sum_probs=98.4
Q ss_pred CceeeEEcC--CCcEEEEcCCC--C-eEEEEcCCCcEEEEecCCC-ccCC-------CCCCceeEEEeC---CCeEEEEe
Q psy13998 99 WPRGIAVGP--DNSIVVADSSN--H-RVQVFQSDGTFVGKFGSMG-NKAG-------QLEHPHYIAVSN---TNRVIVSD 162 (319)
Q Consensus 99 ~~~~l~~~~--~g~~~~~~~~~--~-~i~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~l~~~~---~g~~~~~~ 162 (319)
.+.+|+++| .+.+|++.... + .|...+..|+.-..+.... .... ....+.++++++ .+.+|+..
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~ 135 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT 135 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE
T ss_pred ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe
Confidence 467899998 56788775432 1 5666655554333332110 0000 112456788886 45666654
Q ss_pred CCCCEEEEEecCCceeeecCceeeeecccCC----------cCCCCCCceeEEEcCC--CcEEEEeCCCCeEEEEeCCCC
Q psy13998 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN----------KAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGR 230 (319)
Q Consensus 163 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--g~~~v~~~~~~~i~~~~~~~~ 230 (319)
..+.|.+.+-.|..... +........ ..........|.++|. +.+|+... .+.|++.+..|+
T Consensus 136 -~~ggl~~S~DgG~tW~~----~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG~ 209 (394)
T 3b7f_A 136 -SPQGLFRSTDHGASWEP----VAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAGT 209 (394)
T ss_dssp -ETTEEEEESSTTSBCEE----CHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTTS
T ss_pred -cCCcEEEEcCCCCCeEE----CcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCCC
Confidence 34566655444432110 000000000 0001123467888873 46777654 345777665565
Q ss_pred EEEEeCCCCCC---c----ccccCcceEEEcCC--CcEEEEeCCCCEEEEEcCCCceEEeecccCCCCCCCCCcceEEEc
Q psy13998 231 VITSFGSEGSE---E----GQLKFPRGVAVDDQ--GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVM 301 (319)
Q Consensus 231 ~~~~~~~~~~~---~----~~~~~~~~i~~~~~--g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (319)
....+...... . .....+..|++++. +.+|+... +.|++.+..|+....+...- ..........++++
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~gl~~s~D~G~tW~~~~~~l-~~~~~~~~~~i~~~ 286 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--CGIYRMDRREGVWKRIGDAM-PREVGDIGFPIVVH 286 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--TEEEEEETTTTEEECGGGGS-CTTTCSCEEEEEEC
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--CeEEEeCCCCCcceECCCCC-CCCCccceEEEEEC
Confidence 44443211000 0 00123678899886 56777653 55777776676655542100 00000234567777
Q ss_pred c--CCcEEEEe
Q psy13998 302 S--NGNILVCD 310 (319)
Q Consensus 302 ~--~g~~~v~~ 310 (319)
| .+.+|+..
T Consensus 287 p~~~~~l~~~t 297 (394)
T 3b7f_A 287 QRDPRTVWVFP 297 (394)
T ss_dssp SSCTTCEEEEE
T ss_pred CCCCCEEEEEe
Confidence 5 34577653
No 349
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=82.73 E-value=18 Score=29.57 Aligned_cols=125 Identities=9% Similarity=0.097 Sum_probs=69.4
Q ss_pred CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCc------------EEEEecCCCccCCCCCCceeEEEeCC---CeEEEEe
Q psy13998 99 WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGT------------FVGKFGSMGNKAGQLEHPHYIAVSNT---NRVIVSD 162 (319)
Q Consensus 99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~~~---g~~~~~~ 162 (319)
.+..+.++|+|++++.-+ ...|.+.. +.+. ..+.+............+..+.|+|- +..+++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 466799999999776654 55788777 4221 11122211110111345788899984 4567777
Q ss_pred CCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCC-cEEEEe-CCCCeEEEEe
Q psy13998 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-RVIVSD-SNNHRVQIFD 226 (319)
Q Consensus 163 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~-~~~~~i~~~~ 226 (319)
..|+.|++||+......+. .+.......+. ......+.+++|.+++ .+|+.. ...|.|+-+-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~-d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGL-DARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEES-CSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCC-CcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 7899999999974211111 00000000010 1222556789999877 566533 4567887664
No 350
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}
Probab=82.38 E-value=12 Score=30.00 Aligned_cols=77 Identities=14% Similarity=0.305 Sum_probs=54.2
Q ss_pred CCCc--EEEEeCCCC--eEEEEeCC-CCEEEEeCCCCCCcccccCcc-eEEEcCCCcEEEEeCCCCEEEEEcCCCceEEe
Q psy13998 208 NTNR--VIVSDSNNH--RVQIFDVN-GRVITSFGSEGSEEGQLKFPR-GVAVDDQGYISVGDSGNNRIQIFTPDGQFLRA 281 (319)
Q Consensus 208 ~~g~--~~v~~~~~~--~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~~~v~~~~~~~i~~~~~~g~~~~~ 281 (319)
.+|. ++.-..... .|.++|.+ ++.+.++.....++.....+. ++-+...+.+|+++.....|.+++..|+.+..
T Consensus 36 ~~~k~yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~~~~i~l~n~~G~~~~k 115 (369)
T 3s9j_A 36 ENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQGEIIRN 115 (369)
T ss_dssp ETTEEEEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGGGTEEEEECTTCCEEEE
T ss_pred cCCcEEEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCCcceEEEECCCceEEEE
Confidence 4453 444555667 99999974 555667655444444555563 46666777999999888899999999999887
Q ss_pred ecc
Q psy13998 282 FGC 284 (319)
Q Consensus 282 ~~~ 284 (319)
+..
T Consensus 116 ~~~ 118 (369)
T 3s9j_A 116 YNF 118 (369)
T ss_dssp EEC
T ss_pred Eec
Confidence 643
No 351
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}
Probab=81.04 E-value=17 Score=29.09 Aligned_cols=77 Identities=12% Similarity=0.284 Sum_probs=51.8
Q ss_pred CCCeE--EEEeCCCC--EEEEEecCCceeeecCceeeeecccCCcCCCCCCce-eEEEcCCCcEEEEeCCCCeEEEEeCC
Q psy13998 154 NTNRV--IVSDSNNH--RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH-YIAVSNTNRVIVSDSNNHRVQIFDVN 228 (319)
Q Consensus 154 ~~g~~--~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~v~~~~~~~i~~~~~~ 228 (319)
.+|+- +....... .|.++|++.. +++.++......+.....+. ++-+...+.+|+++.....|.++|.+
T Consensus 36 ~~~k~yL~~~N~~~~~~~i~~iDL~~~------kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~~~~i~l~n~~ 109 (369)
T 3s9j_A 36 ENGKEYLHFENTQKSLYDIVIFDIENQ------QIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQ 109 (369)
T ss_dssp ETTEEEEEEEECSTTCCEEEEEETTTT------EEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGGGTEEEEECTT
T ss_pred cCCcEEEEEeCCCCCcCcEEEEECCCC------ceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCCcceEEEECCC
Confidence 44533 33455667 9999999854 55555443322233344453 46666778999998877899999999
Q ss_pred CCEEEEeC
Q psy13998 229 GRVITSFG 236 (319)
Q Consensus 229 ~~~~~~~~ 236 (319)
|+.+..+.
T Consensus 110 G~~~~k~~ 117 (369)
T 3s9j_A 110 GEIIRNYN 117 (369)
T ss_dssp CCEEEEEE
T ss_pred ceEEEEEe
Confidence 99888764
No 352
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=73.90 E-value=31 Score=27.24 Aligned_cols=203 Identities=13% Similarity=0.233 Sum_probs=104.6
Q ss_pred ceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCceeeEE---cCCCcEEEEcCCCCeEEEEcCCC--cEEEEe
Q psy13998 60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAV---GPDNSIVVADSSNHRVQVFQSDG--TFVGKF 134 (319)
Q Consensus 60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~g~~~~~~~~~~~i~~~~~~~--~~~~~~ 134 (319)
+.-.+|..++++.-. ...+++ |++++..++..+..+..+.| -.+..+-+.. +..|+.|+.++ .+.+.+
T Consensus 71 sAIMnP~~~ViALra-g~~LQi----FnletK~klks~~~~e~VvfWkWis~~~L~lVT--~taVyHWs~~~~s~P~kvF 143 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQI----FNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMF 143 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEE----EETTTTEEEEEEECSSCEEEEEECSSSEEEEEE--SSEEEEEESSTTCCCEEEE
T ss_pred eeeeCCCccEEEEec-CCeEEE----echHHhhhhcceecCCccEEEEecCCCeEEEEc--CCcEEEEcccCCCCCceee
Confidence 445577777766654 679999 99999988887666555543 3333433322 35799998544 556666
Q ss_pred cCCCccCCCCCCceeEEEeCCCeEEEEeC---CC----CEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998 135 GSMGNKAGQLEHPHYIAVSNTNRVIVSDS---NN----HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~---~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (319)
.....-. ...+..-..+++.++++..+ .+ |.+.+|..+.+....-......|.... ..+......-+++.
T Consensus 144 dR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~-~~g~~~~~~lf~fa 220 (365)
T 2xzh_A 144 DRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK-MEGNAEESTLFCFA 220 (365)
T ss_dssp ECCGGGT--TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEEC-CTTCSSCEEEEEEE
T ss_pred ecchhcc--cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEe-cCCCCCCceEEEEE
Confidence 5433222 24455666778777665432 12 556677666433221101111110000 00110111111221
Q ss_pred CCCcEEEEeCCCCeEEEEeCC----CC-----EEEEeCCCCCCcccccCcceEEEcCC-CcEEEEeCCCCEEEEEc-CCC
Q psy13998 208 NTNRVIVSDSNNHRVQIFDVN----GR-----VITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFT-PDG 276 (319)
Q Consensus 208 ~~g~~~v~~~~~~~i~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~~v~~~~~~~i~~~~-~~g 276 (319)
.. ....+++.+.+.. +. ....+..+ .......|.++.+++. |-+|+. ..-|.|++|| .+|
T Consensus 221 ~r------~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fp--pea~~DFPVamqvs~kygviyvi-TK~G~ihlyDleTg 291 (365)
T 2xzh_A 221 VR------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP--PEAQNDFPVAMQISEKHDVVFLI-TKYGYIHLYDLETG 291 (365)
T ss_dssp EE------ETTEEEEEEEECSSCCTTCCCCCCEEEEECCC--TTCTTCCEEEEEEETTTTEEEEE-ETTSEEEEEETTTC
T ss_pred Ee------cCCCcEEEEEEcCCCCCCCCCcccccceeeCC--ccccCCceEEEEecccCCEEEEE-eCCcEEEEEEcccC
Confidence 11 1112466666641 21 11222111 1234567889999887 445555 4569999999 466
Q ss_pred ceEEe
Q psy13998 277 QFLRA 281 (319)
Q Consensus 277 ~~~~~ 281 (319)
..+..
T Consensus 292 t~i~~ 296 (365)
T 2xzh_A 292 TCIYM 296 (365)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 66543
No 353
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=71.95 E-value=46 Score=28.41 Aligned_cols=127 Identities=13% Similarity=0.146 Sum_probs=73.0
Q ss_pred EcCCCcEEEEcCCCCeEEEEcCCCcEEEEecCCCccCCCCCCceeEEEeCCCeEEEEeC--------------CCCEEEE
Q psy13998 105 VGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS--------------NNHRVQI 170 (319)
Q Consensus 105 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~--------------~~~~i~~ 170 (319)
-.++|.+.+..+ ..+..+|..|+.+..+..+.. ....-+.+...++|++++... -+..|..
T Consensus 214 g~~nG~l~~g~G--~~i~elD~~Gkvv~~~~lp~g---~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~E 288 (571)
T 3elq_A 214 ETPRGTFTAVQG--QHWYEFDMMGQVLEDHKLPRG---FADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILE 288 (571)
T ss_dssp ECTTSCEEEEEB--TEEEEECTTCCEEEEEECCTT---EECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEE
T ss_pred ecCCCCEEEecC--cEEEEECCCCcEEEEEECCCC---ccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEE
Confidence 345677655432 469999999999887754321 111225677788888777532 1234555
Q ss_pred EecCCceeeecCceeeeecc----------------------cCC-----------------cCCCCCCceeEEEcC-CC
Q psy13998 171 FDVNGRVFQSDGTFVGKFGS----------------------MGN-----------------KAGQLEHPHYIAVSN-TN 210 (319)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~----------------------~~~-----------------~~~~~~~~~~~~~~~-~g 210 (319)
.|..|.++..- .....+.. .+. ......+.+++..++ ++
T Consensus 289 VD~tGeVv~eW-~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd 367 (571)
T 3elq_A 289 VDKSGRVVDVW-DLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDD 367 (571)
T ss_dssp ECTTSCEEEEE-EHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTT
T ss_pred ECCCCCEEEEE-EhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCC
Confidence 55333321100 00000000 000 012345678888887 45
Q ss_pred cEEEEeCCCCeEEEEeCCCCEEEEeCCC
Q psy13998 211 RVIVSDSNNHRVQIFDVNGRVITSFGSE 238 (319)
Q Consensus 211 ~~~v~~~~~~~i~~~~~~~~~~~~~~~~ 238 (319)
.++++.... .|+.++.+|+.+..++..
T Consensus 368 ~~liSsR~~-~I~~Id~tG~V~W~LGg~ 394 (571)
T 3elq_A 368 SIILSSRHQ-GVVKIGRDKQVKWILAPS 394 (571)
T ss_dssp EEEEEETTT-EEEEEETTSCEEEEESCS
T ss_pred EEEEECCcc-EEEEEcCCCcEEEEECCC
Confidence 788888877 888889889888888654
No 354
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=70.16 E-value=84 Score=30.67 Aligned_cols=107 Identities=12% Similarity=0.204 Sum_probs=60.3
Q ss_pred ceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCceeeEE---cCCCcEEEEcCCCCeEEEEcCCC--cEEEEe
Q psy13998 60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAV---GPDNSIVVADSSNHRVQVFQSDG--TFVGKF 134 (319)
Q Consensus 60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~g~~~~~~~~~~~i~~~~~~~--~~~~~~ 134 (319)
+.-.+|..++++.-. ..++.+ |++++...+..+..+..+.| -.+..+-+.. +..|+.|+..| .+.+.+
T Consensus 70 sAIMnP~~~iiALra-g~~lQi----Fnl~~k~klks~~~~e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQI----FNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEE----eehHHhhhhcccccCCCceEEEecCCCeeEEEc--CCeEEEeccCCCCccHHHH
Confidence 334567667666544 689999 99988877776555545443 2233332222 35799999654 333334
Q ss_pred cCCCccCCCCCCceeEEEeCCCeEEEEeC-------CCCEEEEEecCC
Q psy13998 135 GSMGNKAGQLEHPHYIAVSNTNRVIVSDS-------NNHRVQIFDVNG 175 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-------~~~~i~~~~~~~ 175 (319)
.....-. ...+.+-..+++.++++..+ -.|.+.+|..+.
T Consensus 143 dR~~~L~--~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 143 DRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred hcchhcc--cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 3222111 23445566677777765432 235666776653
No 355
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=68.51 E-value=48 Score=27.22 Aligned_cols=127 Identities=11% Similarity=0.202 Sum_probs=70.9
Q ss_pred CCceeEEEeCCCeEEEEeCCCCEEEEEecC-Cceeeec-C---ce-eeeecccCCcCCCCCCceeEEEcCCC---cEEEE
Q psy13998 145 EHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVFQSD-G---TF-VGKFGSMGNKAGQLEHPHYIAVSNTN---RVIVS 215 (319)
Q Consensus 145 ~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~v~ 215 (319)
..+..+.++|+|++++..+ +..|.+..+. +...... + .+ .+.+............+..+.|+|-+ ..+++
T Consensus 66 ~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp CTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred CceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 3567799999999887764 4677777765 2211110 0 11 11221111101112345678888853 46777
Q ss_pred eCCCCeEEEEeCCC---CEEEEeCCCCC---CcccccCcceEEEcCCC-cEEEEe-CCCCEEEEEc
Q psy13998 216 DSNNHRVQIFDVNG---RVITSFGSEGS---EEGQLKFPRGVAVDDQG-YISVGD-SGNNRIQIFT 273 (319)
Q Consensus 216 ~~~~~~i~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~i~~~~~g-~~~v~~-~~~~~i~~~~ 273 (319)
-..++.|++||..- +.. .+..... .......+.+++|.+++ .+|+.. ...|-|+.+-
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 77789999999642 222 3321110 01122457899999987 566644 4567888775
No 356
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=57.69 E-value=1.1e+02 Score=27.54 Aligned_cols=214 Identities=10% Similarity=0.060 Sum_probs=96.0
Q ss_pred CCCcceEEcCC--CcEEEEeCCCCeEEEeccccccccceeeEE-----------ecCceeeEEcCC--CcEEEEcCC-C-
Q psy13998 56 TWPRGIAVGPD--NSIVVADSSNHRVQVCFPHFDLKTNCVFLA-----------FTWPRGIAVGPD--NSIVVADSS-N- 118 (319)
Q Consensus 56 ~~~~~v~~~~~--g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~--g~~~~~~~~-~- 118 (319)
..+.+|+++|. +.+|+. ...+.|.. .+- .+..+.. ...+.+|+++|. +.+|++... .
T Consensus 15 g~i~~i~~~p~~~~~~~a~-~~~ggv~r----S~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~ 88 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYAR-TDIGGAYR----WDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG 88 (789)
T ss_dssp SCEEEEEECSSSTTCEEEE-ESSSCEEE----EET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred CcEEEEEECCCCCCEEEEE-ecCCCEEE----ecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCC
Confidence 47889999985 335554 44455554 211 1222221 124678889875 346665432 2
Q ss_pred ---CeEEEEcCCCcEEEEecCCCccCC---CCCCceeEEEeCC-CeEEEEeCCCCEEEEEecCCceeeecCceeeeeccc
Q psy13998 119 ---HRVQVFQSDGTFVGKFGSMGNKAG---QLEHPHYIAVSNT-NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSM 191 (319)
Q Consensus 119 ---~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~-g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 191 (319)
+.|++=+..|+.-..+........ ....+..++++|. .+.++.+...+.|.+-+=.|+ ... .....
T Consensus 89 ~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~------TW~-~~~~~ 161 (789)
T 1sqj_A 89 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAK------TWT-NVTSI 161 (789)
T ss_dssp SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTS------SCE-EETTS
T ss_pred CcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCc------ccC-CCccC
Confidence 445444444544333322100000 0012457888874 334444443344432221121 111 11100
Q ss_pred CCcCCCCCCceeEEEcCC--CcEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCc------------ccccCcceEEEcC-C
Q psy13998 192 GNKAGQLEHPHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEE------------GQLKFPRGVAVDD-Q 256 (319)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~--g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~i~~~~-~ 256 (319)
............++++|. +.+|+.....+.|++=.-.|+.-..+....... ..+..+..++++| .
T Consensus 162 ~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 241 (789)
T 1sqj_A 162 PDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTP 241 (789)
T ss_dssp CCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECS
T ss_pred ccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCC
Confidence 000001133456788874 356666543245554333344333332110000 0112236778887 5
Q ss_pred CcEEEEe--------CCCCEEEEEcCCCceEEee
Q psy13998 257 GYISVGD--------SGNNRIQIFTPDGQFLRAF 282 (319)
Q Consensus 257 g~~~v~~--------~~~~~i~~~~~~g~~~~~~ 282 (319)
+.+|++. ...+.|+.-+..|+.-..+
T Consensus 242 ~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~~~ 275 (789)
T 1sqj_A 242 NFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDI 275 (789)
T ss_dssp SEEEEEEESSCSSSCCCCCCEEEEETTTCCEEEC
T ss_pred CeEEEEEecCCCCCCCCCceEEEEeCCCCceEEC
Confidence 6677763 3556777777666554444
No 357
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=57.51 E-value=1.1e+02 Score=27.43 Aligned_cols=205 Identities=11% Similarity=0.055 Sum_probs=93.1
Q ss_pred CceeeEEcCCC-cEEEEcCCCCeEEEEcCCCcEEEEecCCC------ccCCCCCCceeEEEeCC--CeEEEEeCC-----
Q psy13998 99 WPRGIAVGPDN-SIVVADSSNHRVQVFQSDGTFVGKFGSMG------NKAGQLEHPHYIAVSNT--NRVIVSDSN----- 164 (319)
Q Consensus 99 ~~~~l~~~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~--g~~~~~~~~----- 164 (319)
.+.+|+++|.+ ++++++...+.|+..+..|+.-..+.... ........+.+++++|. +.+|+....
T Consensus 22 ~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~ 101 (763)
T 3a0f_A 22 FISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWD 101 (763)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTC
T ss_pred ceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCC
Confidence 66889999875 44444444556776666665444332211 00002245788899883 467775532
Q ss_pred -CCEEEEEecCCceeeecCceeeeecccCCcCCCCCC--ceeEEEcCC--CcEEEEeCCCCeEEEEeCCCCEEEEeCCCC
Q psy13998 165 -NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH--PHYIAVSNT--NRVIVSDSNNHRVQIFDVNGRVITSFGSEG 239 (319)
Q Consensus 165 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (319)
.+.|.+-.=.|+ .................. ...++++|. +.+|+.. ..+.|++=+-.|+.-..+....
T Consensus 102 ~~~~i~~S~DgG~------TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~-~~~~l~~S~DgG~TW~~~~~~~ 174 (763)
T 3a0f_A 102 PWAAFLVSDDRGK------TFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS-RTQGLWRSTDRAQTWSRMNQLP 174 (763)
T ss_dssp SCCEEEEESSTTS------SCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC-SSSCEEEESSTTSSCEECTTSC
T ss_pred CCceEEEECCCCC------CceeccCCcccCccccCccccceEEECCCCCCEEEEEe-CCCcEEEECCCCcCccccccCc
Confidence 233332221221 111111000000000011 135888864 4566654 3445554333344433332111
Q ss_pred CCcccccCcceEEEcCCC--cEEEEeCCCCEEEEEcCCCceEEeecccCCC----------------CCCCCCcceEEEc
Q psy13998 240 SEEGQLKFPRGVAVDDQG--YISVGDSGNNRIQIFTPDGQFLRAFGCWGSG----------------DGEFKGLEGVAVM 301 (319)
Q Consensus 240 ~~~~~~~~~~~i~~~~~g--~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~----------------~~~~~~~~~l~~~ 301 (319)
...........|+++|.. .+|++....+.|++-...|+.-..+...... ......+..+++.
T Consensus 175 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 254 (763)
T 3a0f_A 175 DSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALG 254 (763)
T ss_dssp CCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEEC
T ss_pred ccCCCccceEEEEECCCCCCEEEEEEeCCCeEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEEC
Confidence 000111234567888753 6777766543344444445543333210000 0011234567778
Q ss_pred cCCcEEEEe
Q psy13998 302 SNGNILVCD 310 (319)
Q Consensus 302 ~~g~~~v~~ 310 (319)
+++.+|++.
T Consensus 255 ~~g~l~~~~ 263 (763)
T 3a0f_A 255 KNGRLYITY 263 (763)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEe
Confidence 888887773
No 358
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=57.15 E-value=83 Score=26.11 Aligned_cols=203 Identities=13% Similarity=0.232 Sum_probs=103.1
Q ss_pred ceEEcCCCcEEEEeCCCCeEEEeccccccccceeeEEecCceeeEE---cCCCcEEEEcCCCCeEEEEcCCC--cEEEEe
Q psy13998 60 GIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAV---GPDNSIVVADSSNHRVQVFQSDG--TFVGKF 134 (319)
Q Consensus 60 ~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~g~~~~~~~~~~~i~~~~~~~--~~~~~~ 134 (319)
+.-.+|..++++.-. ...+.+ |++++...+..+..+..+.| -.+..+-+.. +..|+.|+.+| .+.+.+
T Consensus 70 sAIMnP~~~iiALra-g~~lQi----Fnle~K~klks~~~~e~VvfWkWis~~~l~lVT--~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQI----FNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEE----EETTTTEEEEEEECSSCCCEEEEEETTEEEEEC--SSEEEEEESSSSCCCEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEE----EchHHhhhhcceecCCCceEEEecCCCeEEEEc--CCeeEEecccCCCCchhhe
Confidence 445567777666544 679999 99998888886665544433 2233332222 45799999644 566666
Q ss_pred cCCCccCCCCCCceeEEEeCCCeEEEEeC---C----CCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEc
Q psy13998 135 GSMGNKAGQLEHPHYIAVSNTNRVIVSDS---N----NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS 207 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~---~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (319)
.....-. ...+..-..+++.++++..+ . .|.+.+|..+.+....--.....|.... ..+......-+++.
T Consensus 143 dR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~-~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 143 DRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK-MEGNAEESTLFCFA 219 (494)
T ss_dssp ECCGGGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEE-CTTCSSEEEEEEEE
T ss_pred ecchhcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEe-cCCCCCCceEEEEE
Confidence 5443222 24555667778887766432 1 2456677665432211000111110000 00000001111111
Q ss_pred CCCcEEEEeCCCCeEEEEeCC----C-----CEEEEeCCCCCCcccccCcceEEEcCCC-cEEEEeCCCCEEEEEc-CCC
Q psy13998 208 NTNRVIVSDSNNHRVQIFDVN----G-----RVITSFGSEGSEEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFT-PDG 276 (319)
Q Consensus 208 ~~g~~~v~~~~~~~i~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~~~v~~~~~~~i~~~~-~~g 276 (319)
... ...+++.+.+.. + +....+.. ........|.++.+++.- -+|+. ..-|.|++|| .+|
T Consensus 220 ~r~------~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~f--ppe~~~DFPvamqvs~kygviyvi-TK~G~i~lyDleTg 290 (494)
T 1bpo_A 220 VRG------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFF--PPEAQNDFPVAMQISEKHDVVFLI-TKYGYIHLYDLETG 290 (494)
T ss_dssp ECS------TTCCEEEEEECSCCCTTCCCCCCEEEECCC--CTTSTTCCEEEEEEETTTTEEEEE-ETTSEEEEEETTTC
T ss_pred Eec------CCCcEEEEEEcCCCccCCCCccceeeeeeC--CcccccCceeEEEecccCCEEEEE-ecCceEEEEecccc
Confidence 110 112567777642 1 11111111 113345678899999874 45555 4568999999 466
Q ss_pred ceEEe
Q psy13998 277 QFLRA 281 (319)
Q Consensus 277 ~~~~~ 281 (319)
..+..
T Consensus 291 t~i~~ 295 (494)
T 1bpo_A 291 TCIYM 295 (494)
T ss_dssp CEEEE
T ss_pred eeeee
Confidence 65543
No 359
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=53.76 E-value=1.2e+02 Score=27.12 Aligned_cols=205 Identities=11% Similarity=0.055 Sum_probs=92.2
Q ss_pred CceeeEEcCCC--cEEEEcCCCCeEEEEcCCCcEEEEecCCCc-cCCCCCCceeEEEeCC--CeEEEEeCC-C----CEE
Q psy13998 99 WPRGIAVGPDN--SIVVADSSNHRVQVFQSDGTFVGKFGSMGN-KAGQLEHPHYIAVSNT--NRVIVSDSN-N----HRV 168 (319)
Q Consensus 99 ~~~~l~~~~~g--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~--g~~~~~~~~-~----~~i 168 (319)
.+.+|+++|.. .+|+. ...+.|++.+..|+.-..+..... ..-....+.+|+++|. +.+|+.... . +.|
T Consensus 16 ~i~~i~~~p~~~~~~~a~-~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v 94 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYAR-TDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAF 94 (789)
T ss_dssp CEEEEEECSSSTTCEEEE-ESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred cEEEEEECCCCCCEEEEE-ecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEE
Confidence 56789998863 45554 445667777666654443321100 0001245788999984 356665433 2 344
Q ss_pred EEEecCCceeeecCceeee-ecccCCcCCCCCCceeEEEcCCC-cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCccccc
Q psy13998 169 QIFDVNGRVFQSDGTFVGK-FGSMGNKAGQLEHPHYIAVSNTN-RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLK 246 (319)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 246 (319)
..-.-.|+.-. .+.. +....... .......++++|.. ..++++...+.|++=+-.|+.-..+...........
T Consensus 95 ~~S~DgG~TW~----~~~~~~~~~~~~~-~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 95 YVSEDRGQSFT----IYESPFPMGANDM-GRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp EEESSTTSEEE----EEECSSCCCTTST-TTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTT
T ss_pred EEECCCCCcce----eccCCcccCccCC-CccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCC
Confidence 43222222110 0100 00000000 00123468888743 333344434455544334544444422110000112
Q ss_pred CcceEEEcCC--CcEEEEeCCCCEEEEEcCCCceEEeecccCCC------------CCCCCCcceEEEcc-CCcEEEE
Q psy13998 247 FPRGVAVDDQ--GYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG------------DGEFKGLEGVAVMS-NGNILVC 309 (319)
Q Consensus 247 ~~~~i~~~~~--g~~~v~~~~~~~i~~~~~~g~~~~~~~~~~~~------------~~~~~~~~~l~~~~-~g~~~v~ 309 (319)
.+..|.++|. +.+|++....+.|+.=...|+.-..+...... ...+..+..++++| ++.+|++
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~ 247 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATAPQGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVT 247 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESSTTCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEE
T ss_pred CeEEEEECCCCCCEEEEEEcCCCeEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEE
Confidence 3457888875 35777665434555544445443333211000 01112347778877 5556666
No 360
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=53.48 E-value=1.5e+02 Score=28.08 Aligned_cols=214 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred EEeCCCCeEEEeccccccccceeeEEec-----CceeeEEcCCCcEEEEcC-----------------------------
Q psy13998 71 VADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVVADS----------------------------- 116 (319)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~g~~~~~~~----------------------------- 116 (319)
+....++.+++ ..+.....+..-. .|..++++|+.+.|+...
T Consensus 709 ~v~~~~~~LrI----~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1158)
T 3ei3_A 709 LALANNSTLTI----GTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVS 784 (1158)
T ss_dssp EEEECSSCEEE----EEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEEC
T ss_pred EEEEcCCceEE----EEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccc
Q ss_pred --------------------CCCeEEEEc-CCCcEEEEecCCCccCCCCCCceeEEEeC----CCeEEEEeC--------
Q psy13998 117 --------------------SNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSN----TNRVIVSDS-------- 163 (319)
Q Consensus 117 --------------------~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~g~~~~~~~-------- 163 (319)
....|+++| .+.+.+..+. ....+.+.+++.-. ...+++.++
T Consensus 785 ~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~-----l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~ 859 (1158)
T 3ei3_A 785 SSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQ-----FLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEA 859 (1158)
T ss_dssp CCCCC----------CCCEEEEEEEEEEETTTCCEEEEEE-----CCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCS
T ss_pred ccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEe-----CCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCC
Q ss_pred --CCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcC-CCcEEEEeCCCCeEEEEe-CCCCEEEEeCCCC
Q psy13998 164 --NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHRVQIFD-VNGRVITSFGSEG 239 (319)
Q Consensus 164 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~i~~~~-~~~~~~~~~~~~~ 239 (319)
..|+|.+|+.....+ +++......+.. .++.+ +|+++++-.. .|++|+ ...+.++.-
T Consensus 860 ~~~~Gri~vf~v~~~kL----~lv~~~~v~g~v---------~al~~~~g~Lla~ig~--~l~vy~l~~~~~L~~~---- 920 (1158)
T 3ei3_A 860 EPKQGRIVVFQYSDGKL----QTVAEKEVKGAV---------YSMVEFNGKLLASINS--TVRLYEWTTEKELRTE---- 920 (1158)
T ss_dssp SCCCEEEEEEEEETTEE----EEEEEEEESSCE---------EEEEEETTEEEEEETT--EEEEEEECTTSCEEEE----
T ss_pred CCCceEEEEEEEECCEE----EEEEEEEcCCcC---------EEEeeeCCEEEEEcCC--EEEEEECCCCceEEEE----
Q ss_pred CCcccccCcceEEEcCCCcEEEEeCCCCEEEEEc--CCCceEEeecccCCCCCCCCCcceEEEccCCcEEEEeCCCCeEE
Q psy13998 240 SEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317 (319)
Q Consensus 240 ~~~~~~~~~~~i~~~~~g~~~v~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~v~~~~~~~i~ 317 (319)
...+..+..+.+...|++++.+.....|.++. .....+..++. +....+++++.+-.++.+++++...+-.-
T Consensus 921 --~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~----D~~~~~vta~~~ld~~t~l~aD~~gNl~v 994 (1158)
T 3ei3_A 921 --CNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR----DFNPNWMSAVEILDDDNFLGAENAFNLFV 994 (1158)
T ss_dssp --EEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE----CCSCBCEEEEEEEETTEEEEEETTSEEEE
T ss_pred --eeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe----ecccccEEEEEEEccCcEEEEcCCCcEEE
Q ss_pred e
Q psy13998 318 V 318 (319)
Q Consensus 318 v 318 (319)
+
T Consensus 995 l 995 (1158)
T 3ei3_A 995 C 995 (1158)
T ss_dssp E
T ss_pred E
No 361
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=49.70 E-value=1.2e+02 Score=25.90 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=22.0
Q ss_pred CCceeEEEeC-CCeEEEEeCCCCEEEEEecCC
Q psy13998 145 EHPHYIAVSN-TNRVIVSDSNNHRVQIFDVNG 175 (319)
Q Consensus 145 ~~~~~l~~~~-~g~~~~~~~~~~~i~~~~~~~ 175 (319)
-.++++..++ +++++++.... .|..++.++
T Consensus 355 ~HiNsv~~d~~dd~~liSsR~~-~I~~Id~tG 385 (571)
T 3elq_A 355 AHVNSIAYDAKDDSIILSSRHQ-GVVKIGRDK 385 (571)
T ss_dssp CCEEEEEEETTTTEEEEEETTT-EEEEEETTS
T ss_pred cEecceeEcCCCCEEEEECCcc-EEEEEcCCC
Confidence 3467888887 56888888777 787777644
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.30 E-value=2e+02 Score=26.54 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=27.0
Q ss_pred eeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEecC
Q psy13998 101 RGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGS 136 (319)
Q Consensus 101 ~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~~~ 136 (319)
.+++..++..++++-+.|+++++|+ .+++.+.....
T Consensus 239 ~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 239 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp EEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred EEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 4555556667777888999999999 77777776543
No 363
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=37.65 E-value=2.2e+02 Score=25.28 Aligned_cols=64 Identities=13% Similarity=0.022 Sum_probs=37.3
Q ss_pred CceeeEEcCC--CcEEEEcCCCCeEEEEcCCCcEEEEecCC-CccCCCCCCceeEEEeCC--CeEEEEeC
Q psy13998 99 WPRGIAVGPD--NSIVVADSSNHRVQVFQSDGTFVGKFGSM-GNKAGQLEHPHYIAVSNT--NRVIVSDS 163 (319)
Q Consensus 99 ~~~~l~~~~~--g~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~--g~~~~~~~ 163 (319)
.+.+|+++|. +.+|+ ....+.|++.+..|+.-..+... +...-....+.+|+++|. +.+|+...
T Consensus 24 ~i~~i~~~p~~~~~~~~-~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~ 92 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYA-RAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAG 92 (737)
T ss_dssp CCCEEEECSSSTTCEEE-ECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEEC
T ss_pred eeeEEEECCCCCCEEEE-EecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEec
Confidence 5678999986 34555 44456788887666654443211 100001234678999983 46777653
No 364
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=36.95 E-value=1.6e+02 Score=23.42 Aligned_cols=138 Identities=12% Similarity=0.153 Sum_probs=72.8
Q ss_pred CCeEEEeccccccccceee-EEecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEe
Q psy13998 76 NHRVQVCFPHFDLKTNCVF-LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVS 153 (319)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 153 (319)
...|.+ .|+...... +..-...+..++|..++++.-. ...+.+||.+.+ .++.+... +.+.-=.|-
T Consensus 48 ~~~VvI----iDl~n~~~~~Rrpi~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-------e~VvfWkWi 115 (365)
T 2xzh_A 48 QAQVVI----IDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-------DDVTFWKWI 115 (365)
T ss_dssp EEEEEE----EETTSTTSCEEEECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-------SCEEEEEEC
T ss_pred CCEEEE----EECCCCCCccccccccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-------CccEEEEec
Confidence 346777 666543333 2223445666788877665543 678999995554 44444321 122222333
Q ss_pred CCCeE-EEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-------CCCeEEEE
Q psy13998 154 NTNRV-IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-------NNHRVQIF 225 (319)
Q Consensus 154 ~~g~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-------~~~~i~~~ 225 (319)
.+..+ +|+ +..|+-|++++. ..+..-+....... ...+-....+++.+.++..+ -.|.+.+|
T Consensus 116 s~~~L~lVT---~taVyHWs~~~~-----s~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY 185 (365)
T 2xzh_A 116 SLNTVALVT---DNAVYHWSMEGE-----SQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 185 (365)
T ss_dssp SSSEEEEEE---SSEEEEEESSTT-----CCCEEEEECCGGGT--TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCeEEEEc---CCcEEEEcccCC-----CCCceeeecchhcc--cceEEEEEECCCCCEEEEEeEeccCCccceeEEEE
Confidence 34444 333 367999998762 13333333222221 13444556677766443221 13677888
Q ss_pred eCCCCEEEEe
Q psy13998 226 DVNGRVITSF 235 (319)
Q Consensus 226 ~~~~~~~~~~ 235 (319)
..+.+.-..+
T Consensus 186 S~er~~sQ~i 195 (365)
T 2xzh_A 186 SVDRKVSQPI 195 (365)
T ss_dssp ETTTTEEEEE
T ss_pred eeccccccee
Confidence 8766555544
No 365
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=36.58 E-value=2.3e+02 Score=25.27 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=42.9
Q ss_pred ceeEEEcCCC--cEEEEeCCCCeEEEEeCCCCEEEEeCCCCCCc----------------ccccCcceEEEcCCCcEEEE
Q psy13998 201 PHYIAVSNTN--RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEE----------------GQLKFPRGVAVDDQGYISVG 262 (319)
Q Consensus 201 ~~~~~~~~~g--~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~~~~g~~~v~ 262 (319)
...|+++|.+ .+|++....+.|++-.-.|+.-..+....... .....+..+++.+++.+|++
T Consensus 183 ~~~i~~~p~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~ 262 (763)
T 3a0f_A 183 IISVIFDPKNVGTAYVASHAVGGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYIT 262 (763)
T ss_dssp EEEEEECSSSTTCEEEEESSTTCEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEE
T ss_pred eEEEEECCCCCCEEEEEEeCCCeEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEE
Confidence 4567887643 57776654333444333344333332111000 01122456677888888887
Q ss_pred e--------CCCCEEEEEcCCCceEEee
Q psy13998 263 D--------SGNNRIQIFTPDGQFLRAF 282 (319)
Q Consensus 263 ~--------~~~~~i~~~~~~g~~~~~~ 282 (319)
. ...+.|+..+..|+.-..+
T Consensus 263 ~~~~~~~~~~~~g~v~rS~D~G~tW~~~ 290 (763)
T 3a0f_A 263 YSDAPGPWGVLYGEVWSYDPTNGNWKHI 290 (763)
T ss_dssp EESSCSSSCCCCEEEEEEETTTTEEEEC
T ss_pred eccCCCCCCCcceeEEEEeCCCCceEEC
Confidence 4 2346777776667665554
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.52 E-value=3.7e+02 Score=25.46 Aligned_cols=85 Identities=11% Similarity=-0.038 Sum_probs=0.0
Q ss_pred cccCCCCCcCCCCcceEEcCCCcEEEEeCCCCeEEEeccccccccceeeE---------------------------Eec
Q psy13998 46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL---------------------------AFT 98 (319)
Q Consensus 46 ~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------------------------~~~ 98 (319)
+.+....-.+..|+-|.......++|+-...|-+++ -.....+... ...
T Consensus 163 k~~~P~~f~~r~Ph~L~avs~~~lvVsL~DGgLLrL----~r~~~d~~~~~~~f~~~s~l~sL~~l~~~~~~~~~~~~~~ 238 (1139)
T 4fhn_B 163 LCYRPISFLNQKPDLMAAISTSEICVSFFNGGLTKI----ILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPN 238 (1139)
T ss_dssp CCBCCSCTTTSCEEEEEECCSSEEEEEETTSCEEEE----EEETTEEEEEEEC---------------------CCCCTT
T ss_pred eeccCCCccCCCceEEEEEcCCcEEEEECCCCEEEE----EecCCCCCCceeeecCCcHHhhhhhhcccccCCccCCCcc
Q ss_pred CceeeEEcCCCcEEEEcCCCCeEEEEc-CCCcEEEEe
Q psy13998 99 WPRGIAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKF 134 (319)
Q Consensus 99 ~~~~l~~~~~g~~~~~~~~~~~i~~~~-~~~~~~~~~ 134 (319)
.+.+++..++..++++-+.|+++++|+ .+++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
No 367
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.62 E-value=2.8e+02 Score=23.13 Aligned_cols=216 Identities=10% Similarity=0.113 Sum_probs=103.5
Q ss_pred CCeEEEeccccccccceee-EEecCceeeEEcCCCcEEEEcCCCCeEEEEcCCCc-EEEEecCCCccCCCCCCceeEEEe
Q psy13998 76 NHRVQVCFPHFDLKTNCVF-LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGT-FVGKFGSMGNKAGQLEHPHYIAVS 153 (319)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 153 (319)
...|.+ .|+...... +..-...+..++|..++++.-. ...+.+||.+.+ .++.+... +.+.-=.|-
T Consensus 47 ~~~vvI----iDl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-------e~VvfWkWi 114 (494)
T 1bpo_A 47 QAQVVI----IDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-------DDVTFWKWI 114 (494)
T ss_dssp CCEEEE----EETTSTTSCEEEECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-------SCCCEEEEE
T ss_pred CCeEEE----EECCCCCcceecccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-------CCceEEEec
Confidence 347778 676543333 2233445667888877665543 678999995544 44444322 112222333
Q ss_pred CCCeEEEEeCCCCEEEEEecCCceeeecCceeeeecccCCcCCCCCCceeEEEcCCCcEEEEeC-------CCCeEEEEe
Q psy13998 154 NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS-------NNHRVQIFD 226 (319)
Q Consensus 154 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-------~~~~i~~~~ 226 (319)
.+..+-+. .+..|+-|++++. ..+..-+....... ...+-....+++.+.++..+ ..|.+.+|.
T Consensus 115 s~~~l~lV--T~taVyHWsi~~~-----s~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 115 SLNTVALV--TDNAVYHWSMEGE-----SQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp ETTEEEEE--CSSEEEEEESSSS-----CCCEEEEECCGGGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCeEEEE--cCCeeEEecccCC-----CCchhheecchhcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEee
Confidence 33333222 2467999998762 13333333322221 13445556677766543221 136778888
Q ss_pred CCCCEEEEeCCCCCCcccccCcceEEEcCCC---cEEEEeC---CCCEEEEEcCC----Cce---EEeecccCCCCCCCC
Q psy13998 227 VNGRVITSFGSEGSEEGQLKFPRGVAVDDQG---YISVGDS---GNNRIQIFTPD----GQF---LRAFGCWGSGDGEFK 293 (319)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g---~~~v~~~---~~~~i~~~~~~----g~~---~~~~~~~~~~~~~~~ 293 (319)
.+.+.-..+ .+|...-..+.++.+. .+++-.. ..+++++.+.+ |.. .+.....-..+....
T Consensus 186 ~er~~sQ~i------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~D 259 (494)
T 1bpo_A 186 VDRKVSQPI------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 259 (494)
T ss_dssp STTCCEEEE------CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTC
T ss_pred ccccccchh------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccC
Confidence 765544444 3332211122222111 2222222 13678887742 211 111111112234456
Q ss_pred CcceEEEccCCcEEEEeCCCCeEEe
Q psy13998 294 GLEGVAVMSNGNILVCDRENHRIQV 318 (319)
Q Consensus 294 ~~~~l~~~~~g~~~v~~~~~~~i~v 318 (319)
.|-+|.+++.-.++..-..-|.|.+
T Consensus 260 FPvamqvs~kygviyviTK~G~i~l 284 (494)
T 1bpo_A 260 FPVAMQISEKHDVVFLITKYGYIHL 284 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred ceeEEEecccCCEEEEEecCceEEE
Confidence 7888888876543333334455544
No 368
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=22.10 E-value=1.6e+02 Score=18.71 Aligned_cols=24 Identities=4% Similarity=0.138 Sum_probs=14.9
Q ss_pred eeEEEeCCCeEEEEeCCCCEEEEEec
Q psy13998 148 HYIAVSNTNRVIVSDSNNHRVQIFDV 173 (319)
Q Consensus 148 ~~l~~~~~g~~~~~~~~~~~i~~~~~ 173 (319)
..+.+..+|++++.+.. +. .+|..
T Consensus 63 ~~l~l~~dGNLVl~d~~-~~-~lW~S 86 (119)
T 1b2p_A 63 CRAVLQPDGVLVVITNE-NV-TVWQS 86 (119)
T ss_dssp CEEEECTTSCEEEECTT-CC-EEEEC
T ss_pred eEEEEccCCEEEEEeCC-Cc-EEEcC
Confidence 45677788888777643 32 45653
Done!