RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13998
(319 letters)
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 281 bits (721), Expect = 9e-95
Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 42/305 (13%)
Query: 28 GTTPRSQYLQKR-RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHF 86
GT +SQ ++R K G G G FT P G+AV N I+VAD++NHR+Q+ F
Sbjct: 1 GTHMKSQIKRQRMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQI----F 56
Query: 87 DLKTNCVFLA---------FTWPRGIAVGPDNS--IVVADSSNHRVQVFQSDGTFVGKFG 135
D + F +P +AV ++ IV S H++Q++ G FV KFG
Sbjct: 57 DKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFG 116
Query: 136 SMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKA 195
+ L+HP + V N R+IV + RV IFD +G + KFG +
Sbjct: 117 A-----TILQHPRGVTVDNKGRIIVVECKVMRVIIFD-------QNGNVLHKFGC----S 160
Query: 196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD 255
LE P+ + V++ + +SD+ H V++F+ G+ + G EG +P GV ++
Sbjct: 161 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG----EGITNYPIGVGINS 216
Query: 256 QGYISVGDSGNN-RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENH 314
G I + D+ NN + IFT DGQ + A F VA+M +G++++ + ++
Sbjct: 217 NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCF----DVALMDDGSVVLASK-DY 271
Query: 315 RIQVF 319
R+ ++
Sbjct: 272 RLYIY 276
Score = 67.6 bits (166), Expect = 4e-13
Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 40 RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNH-RVQVCFPHFDLKTNCVF---- 94
+ +IG G +P G+ + + I++AD+ N+ + + F +
Sbjct: 195 QYLRQIGGEGI----TNYPIGVGINSNGEILIADNHNNFNLTI----FTQDGQLISALES 246
Query: 95 -LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQ 125
+ +A+ D S+V+A ++R+ +++
Sbjct: 247 KVKHAQCFDVALMDDGSVVLASK-DYRLYIYR 277
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 242 bits (621), Expect = 7e-80
Identities = 56/277 (20%), Positives = 91/277 (32%), Gaps = 29/277 (10%)
Query: 44 KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNH-RVQVCFPHFDLKTNCVFLAFTWPRG 102
+ + P G+AV ++ V + RV T F P+G
Sbjct: 12 QTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQG 71
Query: 103 IAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
+AV ++ V D +N V + + L +P +AV V V+D
Sbjct: 72 LAVDGAGTVYVTDFNNRVVTLA-AGSNNQTVLPF-----DGLNYPEGLAVDTQGAVYVAD 125
Query: 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 222
N+RV + L P +AV N+ V V+D++N+RV
Sbjct: 126 RGNNRVVKLA-------AGSKTQTVLPF-----TGLNDPDGVAVDNSGNVYVTDTDNNRV 173
Query: 223 QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
+ + P G+AVD+ G + V + N++
Sbjct: 174 VKLEAESNNQVVLPF-----TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL 228
Query: 283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G VAV S+ + V DR N R+
Sbjct: 229 PFTG-----LNTPLAVAVDSDRTVYVADRGNDRVVKL 260
Score = 219 bits (561), Expect = 8e-71
Identities = 54/237 (22%), Positives = 86/237 (36%), Gaps = 23/237 (9%)
Query: 46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAV 105
G+ P+G+AV ++ V D +N V + + +T F +P G+AV
Sbjct: 57 GTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL-AAGSNNQTVLPFDGLNYPEGLAV 115
Query: 106 GPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNN 165
++ VAD N+RV + L P +AV N+ V V+D++N
Sbjct: 116 DTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-----TGLNDPDGVAVDNSGNVYVTDTDN 170
Query: 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 225
+RV + ++ + P IAV V V++ N ++V
Sbjct: 171 NRVVKLE-------AESNNQVVLPF-----TDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218
Query: 226 DVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
T G L P VAVD + V D GN+R+ T
Sbjct: 219 LAGSTTSTVLPFTG-----LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHHHH 270
Score = 157 bits (399), Expect = 2e-46
Identities = 46/195 (23%), Positives = 67/195 (34%), Gaps = 24/195 (12%)
Query: 126 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH-RVQIFDVNGRVFQSDGTF 184
S G+ P +AV + V V+ + RV
Sbjct: 5 SPTQASGQTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGS--------- 55
Query: 185 VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQ 244
G+ L P +AV V V+D NN V + T
Sbjct: 56 ---TGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA-GSNNQTVLPF-----DG 106
Query: 245 LKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG 304
L +P G+AVD QG + V D GNNR+ + G +GVAV ++G
Sbjct: 107 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-----LNDPDGVAVDNSG 161
Query: 305 NILVCDRENHRIQVF 319
N+ V D +N+R+
Sbjct: 162 NVYVTDTDNNRVVKL 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 220 bits (562), Expect = 2e-70
Identities = 55/321 (17%), Positives = 103/321 (32%), Gaps = 52/321 (16%)
Query: 42 QFKIGSRGSEPGCFTW---PRGIAVGPDNSIVVADSSNHRVQV----------------- 81
F + PG + G+A+ N++V+ +H
Sbjct: 7 DFHVEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPI 66
Query: 82 ---CFPHFDLKTNCVFLA-----FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTF--- 130
D + + F P G+++ D + V D + H+V
Sbjct: 67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPL 126
Query: 131 --VGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDS-NNHRVQIFDVNGRVFQSDGTFVG 186
+G+ G+ P +AV +T V VSD N R+ F G FV
Sbjct: 127 LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-------PSGKFVT 179
Query: 187 KFGSMGN----KAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRVIT---SFGSE 238
++G + + GQ PH +A+ + +++ V+D N R+Q F + + S
Sbjct: 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF 239
Query: 239 GSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGV 298
G + + G G GD + + + + F +
Sbjct: 240 GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVM--NFSSGEIIDVFKPVRKHFDMPHDI 297
Query: 299 AVMSNGNILVCDRENHRIQVF 319
+G + + D + + F
Sbjct: 298 VASEDGTVYIGDAHTNTVWKF 318
Score = 204 bits (521), Expect = 4e-64
Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 25/249 (10%)
Query: 48 RGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF----------LAF 97
+ S F P G+++ D + V D + H+V PH + F
Sbjct: 83 QSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142
Query: 98 TWPRGIAVGPD-NSIVVADS-SNHRVQVFQSDGTFVGKFGSMGN----KAGQLEHPHYIA 151
P +AV P ++ V+D N R+ F G FV ++G + + GQ PH +A
Sbjct: 143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLA 202
Query: 152 V-SNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 210
+ + +++ V+D N R+Q F + + F K S G + + +
Sbjct: 203 LVPHLDQLCVADRENGRIQCFKTDTKEF----VREIKHASFGRNVFAISYIPGFLFAVNG 258
Query: 211 RVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRI 269
+ D + + + +G +I F P + + G + +GD+ N +
Sbjct: 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVR---KHFDMPHDIVASEDGTVYIGDAHTNTV 315
Query: 270 QIFTPDGQF 278
FT +
Sbjct: 316 WKFTLTEKM 324
Score = 143 bits (362), Expect = 1e-40
Identities = 40/210 (19%), Positives = 72/210 (34%), Gaps = 32/210 (15%)
Query: 43 FKIGSRGSEPGCFTWPRGIAVGPD-NSIVVADS-SNHRVQVCFPHFDLKTNCVFLA---- 96
+ GS+ F P +AV P ++ V+D N R+ F V
Sbjct: 130 GRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ----FSPSGKFVTQWGEES 185
Query: 97 ---------FTWPRGIAVGPD-NSIVVADSSNHRVQVFQSDGT---FVGKFGSMGNKAGQ 143
F+ P +A+ P + + VAD N R+Q F++D K S G
Sbjct: 186 SGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA 245
Query: 144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY 203
+ + + + D + + + S G + F + + PH
Sbjct: 246 ISYIPGFLFAVNGKPYFGDQEPVQGFVMNF------SSGEIIDVFKPVR---KHFDMPHD 296
Query: 204 IAVSNTNRVIVSDSNNHRVQIFDVNGRVIT 233
I S V + D++ + V F + ++
Sbjct: 297 IVASEDGTVYIGDAHTNTVWKFTLTEKMEH 326
Score = 103 bits (258), Expect = 1e-25
Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 30/173 (17%)
Query: 174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVIT 233
+ + + GQ +A+ + N +++ +H + + +
Sbjct: 2 HHHHHDFHVEEELDWPGVYLLPGQ---VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVY 58
Query: 234 SFGS--------------------EGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFT 273
+ S + P G+++D G V D +++
Sbjct: 59 QQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLD 118
Query: 274 PDGQF-----LRAFGCWGSGDGEFKGLEGVAV-MSNGNILVCD-RENHRIQVF 319
P + L GS F VAV S G + V D N RI F
Sbjct: 119 PHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF 171
Score = 77.2 bits (190), Expect = 3e-16
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 23/120 (19%)
Query: 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFL 279
H D + + GQ GVA+D + + + G++ + D +F+
Sbjct: 1 HHHHHHDFHVEEELDWPGVYLLPGQ---VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFV 57
Query: 280 RAFGCWG--------------------SGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G SG F G+++ ++GN V D H++
Sbjct: 58 YQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKL 117
Score = 74.9 bits (184), Expect = 2e-15
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 11/99 (11%)
Query: 42 QFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA----- 96
+ K S G ++ G + D + V + + +
Sbjct: 233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV----MNFSSGEIIDVFKPVR 288
Query: 97 --FTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGK 133
F P I D ++ + D+ + V F +
Sbjct: 289 KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKMEHR 327
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 182 bits (464), Expect = 6e-56
Identities = 25/272 (9%), Positives = 76/272 (27%), Gaps = 35/272 (12%)
Query: 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAF----TWPRGIAVGP 107
T P GI V + + + + +L + +
Sbjct: 11 TNQDTGPYGITVSDKGKVWITQHKANMISC----INLDGKITEYPLPTPDAKVMCLTISS 66
Query: 108 DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 167
D + +++ +++ G P+ I + ++ N +R
Sbjct: 67 DGEVWFTENAANKIGRITKKGIIKEYTLP-----NPDSAPYGITEGPNGDIWFTEMNGNR 121
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 227
+ +G++ + + + +P +I + + N + +++ N+ +
Sbjct: 122 IGRITDDGKIREYELP------------NKGSYPSFITLGSDNALWFTENQNNAIGRITE 169
Query: 228 NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGS 287
+G + P G+ + + + N+I T G+
Sbjct: 170 SGDITEFKIP-----TPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEF-----K 219
Query: 288 GDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
+ + ++ + ++I
Sbjct: 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRL 251
Score = 160 bits (406), Expect = 2e-47
Identities = 28/269 (10%), Positives = 78/269 (28%), Gaps = 30/269 (11%)
Query: 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
P + + D + +++ +++ +K + + P GI GP+ I
Sbjct: 53 PTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDI 112
Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
+ + +R+ DG + +P +I + + N + +++ N+ +
Sbjct: 113 WFTEMNGNRIGRITDDGKIREYELP-----NKGSYPSFITLGSDNALWFTENQNNAIGRI 167
Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
+G + + P I N + + + +++ +G +
Sbjct: 168 TESGDITEFKIP------------TPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEI 215
Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
P + + + G N+I T + +
Sbjct: 216 TEFKIP-----TPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIE-----EYPIQIK 265
Query: 292 FKGLEGVAVMSNGNILVCDRENH--RIQV 318
G+ I + ++ +
Sbjct: 266 SAEPHGICF-DGETIWFAMECDKIGKLTL 293
Score = 83.1 bits (206), Expect = 2e-18
Identities = 13/128 (10%), Positives = 38/128 (29%), Gaps = 7/128 (5%)
Query: 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
P + P GI G D+++ + +++ ++ + P I G +
Sbjct: 179 PTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDL 238
Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
+ +++ S+ + PH I + + + ++
Sbjct: 239 WFTEWGANKIGRLTSNNIIEEYPIQ-----IKSAEPHGICFDGET-IWFAMECD-KIGKL 291
Query: 172 DVNGRVFQ 179
+ +
Sbjct: 292 TLIKDNME 299
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 180 bits (458), Expect = 6e-55
Identities = 32/268 (11%), Positives = 74/268 (27%), Gaps = 27/268 (10%)
Query: 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
+ P GI D + +++ +K V + V I
Sbjct: 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDI 75
Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
++ +++ G F P+ I + + N R+
Sbjct: 76 WFTENGANKIGKLSKKGGFTEYPLP-----QPDSGPYGITEGLNGDIWFTQLNGDRIGKL 130
Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
+G +++ D G + P +I + + N + +++ N+ + G++
Sbjct: 131 TADGTIYEYDLPNKGSY------------PAFITLGSDNALWFTENQNNSIGRITNTGKL 178
Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
P G+ + G + + N+I T G+
Sbjct: 179 EEYPLP-----TNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEY-----DIPTP 228
Query: 292 FKGLEGVAVMSNGNILVCDRENHRIQVF 319
+ N I + ++I
Sbjct: 229 NARPHAITAGKNSEIWFTEWGANQIGRI 256
Score = 163 bits (414), Expect = 2e-48
Identities = 32/268 (11%), Positives = 73/268 (27%), Gaps = 29/268 (10%)
Query: 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
P + V I ++ +++ + + P GI G + I
Sbjct: 58 PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDI 117
Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
+ R+ +DGT + + +P +I + + N + +++ N+ +
Sbjct: 118 WFTQLNGDRIGKLTADGTI-----YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172
Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
G++ + P I N + + +++ G +
Sbjct: 173 TNTGKLEEYPLP------------TNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEI 220
Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
P + I + G N+I T D E
Sbjct: 221 SEYDIP-----TPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEY-----QLQTE 270
Query: 292 FKGLEGVAVMSNGNILVCDRENHRIQVF 319
G+ +G++ +I
Sbjct: 271 NAEPHGITFGKDGSVWFAL--KCKIGKL 296
Score = 144 bits (365), Expect = 3e-41
Identities = 26/224 (11%), Positives = 63/224 (28%), Gaps = 24/224 (10%)
Query: 52 PGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
P + P GI G + I + R+ + + ++P I +G DN++
Sbjct: 100 PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNAL 159
Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
++ N+ + + G P I N + + +++
Sbjct: 160 WFTENQNNSIGRITNTGKLEEYPLP-----TNAAAPVGITSGNDGALWFVEIMGNKIGRI 214
Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
G + + D PH I + + ++ +++ + +
Sbjct: 215 TTTGEISEYDI------------PTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTI 262
Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD 275
+ P G+ G + +I +
Sbjct: 263 QEYQLQ-----TENAEPHGITFGKDGSVWFALKC--KIGKLNLN 299
Score = 111 bits (279), Expect = 1e-28
Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 19/182 (10%)
Query: 47 SRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVG 106
P ++P I +G DN++ ++ N+ + L+ + P GI G
Sbjct: 137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSG 196
Query: 107 PDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 166
D ++ + +++ + G PH I + + ++ +
Sbjct: 197 NDGALWFVEIMGNKIGRITTTGEISEYDIP-----TPNARPHAITAGKNSEIWFTEWGAN 251
Query: 167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 226
++ + + + + PH I V + ++ +
Sbjct: 252 QIGRITNDNTIQEYQL------------QTENAEPHGITFGKDGSVWFALKC--KIGKLN 297
Query: 227 VN 228
+N
Sbjct: 298 LN 299
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 160 bits (405), Expect = 4e-46
Identities = 42/283 (14%), Positives = 77/283 (27%), Gaps = 24/283 (8%)
Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVA 114
F + GIA +N+++ + RV++ + T + +
Sbjct: 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIG 189
Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 174
H V V+ + + + DSN + +
Sbjct: 190 WEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT 249
Query: 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITS 234
V T + + G+ G P+ I + +SD N V +G
Sbjct: 250 QEV-----TLIKQLELSGS-LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWF 303
Query: 235 FGSEGS--------EEGQLKFPRGVAVDDQGYISVGDSGNN-RIQ-IFTPDGQ---FLRA 281
GS EE P G+ VD+ G + D ++ + DG
Sbjct: 304 CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ 363
Query: 282 FGCWGSGDGE-----FKGLEGVAVMSNGNILVCDRENHRIQVF 319
DG F + G + + I+ +
Sbjct: 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406
Score = 129 bits (325), Expect = 1e-34
Identities = 28/248 (11%), Positives = 69/248 (27%), Gaps = 29/248 (11%)
Query: 46 GSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAV 105
G + + I +++ V ++ +A+
Sbjct: 173 GGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP------TRIGQLGSTFSGKIGAVAL 226
Query: 106 GP-DNSIVVADSSNHRVQVFQSDG--TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
+ + DS+ + + T + + G+ G P+ I + +SD
Sbjct: 227 DETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS-LGTNPGPYLIYYFVDSNFYMSD 285
Query: 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG-----QLEHPHYIAVSNTNRVIVSDS 217
N V +G F G + G P+ + V + D
Sbjct: 286 QNLSSVYKITPDGECE----WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG 341
Query: 218 -NNHRVQIFDVNGRVIT----SFGSEGSEEG-----QLKFPRGVAVDDQGYISVGDSGNN 267
+ ++ D+ ++ +G +P + D +G + ++
Sbjct: 342 FKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK 401
Query: 268 RIQIFTPD 275
I+ + +
Sbjct: 402 AIRKYAVE 409
Score = 51.5 bits (123), Expect = 1e-07
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 23/169 (13%)
Query: 161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
SD N +D N V S G+L + SN +D +
Sbjct: 2 SDDNKTTGATYDPNQPV---------TVESFMPVEGKLREKVIVKGSN----FGTDKSKV 48
Query: 221 RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ--- 277
+V D +++ + PR + ++ + V F +
Sbjct: 49 KVYFVDEAAERLSTVIGIDNNTLYCLAPRQLPGGNRIKVIVDGKEVTTDGTFKYEQAQNV 108
Query: 278 --FLRAFGCWGSGDG-----EFKGLEGVAVMSNGNILVCDRENHRIQVF 319
+ G+ DG +FK + G+A + N +L R++ R+++
Sbjct: 109 STISGSASKDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLI 157
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 119 bits (299), Expect = 7e-31
Identities = 45/311 (14%), Positives = 93/311 (29%), Gaps = 56/311 (18%)
Query: 50 SEPGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW---PRGIAV 105
+ G F ++ P +++ + H ++ D + V ++ R I
Sbjct: 131 DDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRL----IDFEKEYVSTVYSGLSKVRTICW 186
Query: 106 GPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSN 164
+ +S+++ + N+ + T F + + + N
Sbjct: 187 THEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWN 246
Query: 165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQ 223
+V +D + ++ + +I + N + N H +
Sbjct: 247 AGQVFRYDFTTQE-------TTPLFTIQDSGW----EFHIQFHPSGNYAYIVVVNQHYIL 295
Query: 224 IFDVNGRVIT---------SFGSEGSEEG--------------QLKFPRGVAVDDQGYIS 260
D + + G++ +G +K P D+
Sbjct: 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFY 355
Query: 261 VGDSGNNRIQIFTPDGQF-----LRAFGCWGSGDGE------FKGLEGVAVMSNGNIL-V 308
D N+ I+I TP G+ + G G DG+ F EG+ +
Sbjct: 356 FCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFI 415
Query: 309 CDRENHRIQVF 319
DREN RI+
Sbjct: 416 GDRENRRIRKI 426
Score = 108 bits (270), Expect = 8e-27
Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 39/253 (15%)
Query: 58 PRGIAVGPD-NSIVVADSSNHRVQ----VCFPHFDLKTNCVFLAFTWPRGIAV-GPDNSI 111
R I + +S+++ + N+ + + K G + +
Sbjct: 181 VRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGEL 240
Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQI 170
+ +V + ++ + +I + N + N H +
Sbjct: 241 YFNSWNAGQVFRYDFTTQETTPLFTIQDSGW----EFHIQFHPSGNYAYIVVVNQHYILR 296
Query: 171 FDVNGRV--FQSDGTFVGKFGSMGNKAG--------------QLEHPHYIAVSNTNRVIV 214
D + + + G+ G+ G +++P Y S+
Sbjct: 297 SDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYF 356
Query: 215 SDSNNHRVQIFDVNGRVIT-----SFGSEGSEEG------QLKFPRGVAVDDQG-YISVG 262
D NH ++I GRV T S G+ G +G + P G+ D++ +G
Sbjct: 357 CDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG 416
Query: 263 DSGNNRIQIFTPD 275
D N RI+ +
Sbjct: 417 DRENRRIRKIGYE 429
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 85.0 bits (209), Expect = 1e-18
Identities = 41/347 (11%), Positives = 84/347 (24%), Gaps = 77/347 (22%)
Query: 46 GSRGSEPGCFTWPRGIAVGPDNSIV--VADSSNHRVQVCFPHFDLKTNCV---------- 93
G G + F+ +A P N + + +Q+ DLK +
Sbjct: 129 GPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQL----IDLKNRMLSSPLNINTIP 184
Query: 94 -----FLAFTWPRGIAVGPDNSIVVADSSNHRVQ------VFQSDGTFVGKFGSMGNKAG 142
+AF ++VA + + + + + S
Sbjct: 185 TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA 244
Query: 143 QLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAG----- 196
+ + + + + +V D+ N
Sbjct: 245 AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF 304
Query: 197 ---QLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVIT---------SFGSEGSEEG 243
I + NNH D + + G +
Sbjct: 305 TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDD 364
Query: 244 -----QLKFPRG--------VAVDDQGYISVGDSGNNRIQIFTPDGQ-----------FL 279
++ P +++ D N ++ TP+G L
Sbjct: 365 VGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSL 424
Query: 280 RAFGCWGSGDGE------FKGLEGVAVMSNGNIL-VCDRENHRIQVF 319
WG+ DG+ F+ + G+ + V D+ H I+
Sbjct: 425 ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI 471
Score = 75.0 bits (183), Expect = 3e-15
Identities = 32/244 (13%), Positives = 54/244 (22%), Gaps = 50/244 (20%)
Query: 97 FTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGS---------------MGNK 140
+ G + P + + +V F
Sbjct: 246 YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT 305
Query: 141 AGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRV--FQSDGTFVGKFGSMGNKAG- 196
I + NNH D + F + FVG + G +
Sbjct: 306 IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDV 365
Query: 197 ----QLEHPHYI--------AVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGS---- 240
++ +P D N V+ G V T G S
Sbjct: 366 GTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLA 425
Query: 241 -------------EEGQLKFPRGVAVDDQG-YISVGDSGNNRIQIFTPDGQFLRAFGCWG 286
E + + G+ DD V D + I+ + + + A
Sbjct: 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDENI 485
Query: 287 SGDG 290
D
Sbjct: 486 PEDE 489
Score = 70.7 bits (172), Expect = 8e-14
Identities = 31/254 (12%), Positives = 52/254 (20%), Gaps = 56/254 (22%)
Query: 42 QFKIGSRGSEPGCFTWPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKT---------- 90
F S + G + P + + +V KT
Sbjct: 233 TFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292
Query: 91 ----------NCVFLAFTWPRGIAVGPDNSIV-VADSSNHRVQVFQSDG---------TF 130
+W I + P +NH D F
Sbjct: 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNF 352
Query: 131 VGKFGSMGNKAG-----QLEHPHYI--------AVSNTNRVIVSDSNNHRVQIFDVNGRV 177
VG + G + ++ +P D N V+ G V
Sbjct: 353 VGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIV 412
Query: 178 ----------FQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFD 226
+DG G + + + V D H ++
Sbjct: 413 STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472
Query: 227 VNGRVITSFGSEGS 240
+ G E
Sbjct: 473 MEQ-EENVAGDENI 485
Score = 42.2 bits (98), Expect = 1e-04
Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 23/223 (10%)
Query: 113 VADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 172
V + + V F G F G+ G+ E+ S T +
Sbjct: 59 VINVKSTYVYCFVPSGAFSGEIEIT---VGEGENAVTTTASTTFSYEKKMVVGTLCGYRN 115
Query: 173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVI 232
DG F G G + ++ + I + +Q+ D+ R++
Sbjct: 116 NRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYIC-YDGHKAIQLIDLKNRML 174
Query: 233 TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCW---GSGD 289
+S + + R +A + + D I DG+ + + + D
Sbjct: 175 SSPLNINTIPTNR--IRSIAFNKKIE-GYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD 231
Query: 290 GEFKGLEGVAV-------------MSNGNILVCDRENHRIQVF 319
G F + + NG + E ++
Sbjct: 232 GTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRL 274
Score = 42.2 bits (98), Expect = 1e-04
Identities = 26/225 (11%), Positives = 52/225 (23%), Gaps = 23/225 (10%)
Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 174
N+R DG F G G + ++ + I + +Q+ D+
Sbjct: 112 GYRNNRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYIC-YDGHKAIQLIDLK 170
Query: 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ-----IFDVNG 229
R+ S + + A ++ D + + I N
Sbjct: 171 NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA 230
Query: 230 RVITSFGSEGSEEGQLKFPRGVAVDDQ-GYISVGDSGNNRIQIFTPDGQF--LRAFGCWG 286
S+ K G + G + ++ F ++ G W
Sbjct: 231 DGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290
Query: 287 SGDG-------------EFKGLEGVAVMSNGNI-LVCDRENHRIQ 317
+ + + G NH
Sbjct: 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFM 335
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 76.5 bits (188), Expect = 4e-16
Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 22/228 (9%)
Query: 56 TWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVAD 115
T+ +A PD +I V + + P D G+A + +V
Sbjct: 32 TFLENLASAPDGTIFVTNHEVGEIVSITP--DGNQQIHATVEGKVSGLAFTSNGDLVATG 89
Query: 116 SSNH---RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 172
+ V + +SDGT V ++ + + I + + + +DS + + D
Sbjct: 90 WNADSIPVVSLVKSDGT-VETLLTLPD----AIFLNGITPLSDTQYLTADSYRGAIWLID 144
Query: 173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQIFDVNGRV 231
V G+ + + + P + + VS++ + V+
Sbjct: 145 VVQP----SGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDST- 199
Query: 232 ITSFGSEGSEE--GQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQ 277
G E + A D +G + N + PD
Sbjct: 200 ----DKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 243
Score = 59.6 bits (144), Expect = 3e-10
Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 27/228 (11%)
Query: 98 TWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
T+ +A PD +I V + + DG G +G +A ++
Sbjct: 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSG-------LAFTSNGD 84
Query: 158 VIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
++ + N + + + SDGT V ++ + + I + + + +DS
Sbjct: 85 LVATGWNADSIPVVSLVK----SDGT-VETLLTLPD----AIFLNGITPLSDTQYLTADS 135
Query: 218 NNHRVQIFDVN---GRVITSFGSEGSEEGQLKFPRGVAV-DDQGYISVGDSGNNRIQIFT 273
+ + DV G + + FP + ++ V ++ +
Sbjct: 136 YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIP 195
Query: 274 PDGQFLRAFGCWGSGD--GEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
D G + E ++ A GN+ + +
Sbjct: 196 VDST-----DKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRI 238
Score = 48.8 bits (116), Expect = 7e-07
Identities = 21/196 (10%), Positives = 49/196 (25%), Gaps = 21/196 (10%)
Query: 57 WPRGIAVGPDNSIVVADSSNHRVQVCF---PHFDLKTNCVFLAFTWPRGIAVGPDNSIVV 113
G+A + +V + + V ++T + GI D +
Sbjct: 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT 132
Query: 114 ADSSNHRVQVFQSD---GTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VIVSDSNNHRVQ 169
ADS + + G+ + + + P + + VS++ +
Sbjct: 133 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLL 192
Query: 170 IFDVNGRVFQSDGTFVGKFGSMGNKA--GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 227
V+ G + + A + + + V
Sbjct: 193 RIPVDST------------DKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240
Query: 228 NGRVITSFGSEGSEEG 243
+ +E G
Sbjct: 241 DRSTTIIAQAEQGVIG 256
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 71.3 bits (175), Expect = 3e-14
Identities = 42/281 (14%), Positives = 81/281 (28%), Gaps = 41/281 (14%)
Query: 58 PRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNS- 110
A+ D S V V + + + + + + PD+
Sbjct: 42 FVDTAITSDCSNVVVTSDFCQTLVQ----IETQLEPPKVVAIQEGQSSMADVDITPDDQF 97
Query: 111 IVVADSSNHRVQVFQSDGT--FVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDS-NNH 166
V NH + + IA+S N N +I+ D + +
Sbjct: 98 AVTVTGLNHPFNMQSYSFLKNKFISTIPIPY------DAVGIAISPNGNGLILIDRSSAN 151
Query: 167 RVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIF 225
V+ F ++ + G G P I + + N V++ + + I
Sbjct: 152 TVRRFKIDAD------GVLFDTGQEFISGGT--RPFNITFTPDGNFAFVANLIGNSIGIL 203
Query: 226 DV-NGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDGQFLRAFG 283
+ N IT + G+ P + V D + V + F L
Sbjct: 204 ETQNPENITLLNAVGTNNL----PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK 259
Query: 284 CWGSG----DGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319
+G G G +A+ + + + ++VF
Sbjct: 260 SFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVF 300
Score = 62.1 bits (151), Expect = 3e-11
Identities = 35/247 (14%), Positives = 75/247 (30%), Gaps = 54/247 (21%)
Query: 58 PRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNS--I 111
+ + PD+ V NH + + N GIA+ P+ + I
Sbjct: 86 MADVDITPDDQFAVTVTGLNHPFNM--QSYSFLKNKFISTIPIPYDAVGIAISPNGNGLI 143
Query: 112 VVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQ 169
++ SS + V+ F+ D + G G P I + + N V++ + +
Sbjct: 144 LIDRSSANTVRRFKIDADGVLFDTGQEFISGGT--RPFNITFTPDGNFAFVANLIGNSIG 201
Query: 170 IFDVNGR------------------VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211
I + V DG+ V Y+ +T
Sbjct: 202 ILETQNPENITLLNAVGTNNLPGTIVVSRDGSTV-----------------YVLTESTVD 244
Query: 212 VIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQ 270
V + + + G + +A++ + + + + + ++
Sbjct: 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLF------GANQMALNKTETKLFISANISRELK 298
Query: 271 IFTPDGQ 277
+FT G+
Sbjct: 299 VFTISGK 305
Score = 57.1 bits (138), Expect = 2e-09
Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 17/135 (12%)
Query: 56 TWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCVFLAF------TWPRGIAVGPD 108
T P I PD + VA+ + + + + + P I V D
Sbjct: 176 TRPFNITFTPDGNFAFVANLIGNSIGI----LETQNPENITLLNAVGTNNLPGTIVVSRD 231
Query: 109 NSIV-VADSSNHRVQVFQSDGTFVGKFGSMGNK----AGQLEHPHYIAVS-NTNRVIVSD 162
S V V S V F + S G+ L + +A++ ++ +S
Sbjct: 232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291
Query: 163 SNNHRVQIFDVNGRV 177
+ + +++F ++G+V
Sbjct: 292 NISRELKVFTISGKV 306
Score = 44.8 bits (106), Expect = 2e-05
Identities = 21/178 (11%), Positives = 50/178 (28%), Gaps = 31/178 (17%)
Query: 107 PDNSIVVADSSNHRVQVFQSD-GTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSN 164
N +V + R+ F +D + + G A++ + + V+V+
Sbjct: 8 TSNFGIVVEQHLRRISFFSTDTLEILNQI-----TLG--YDFVDTAITSDCSNVVVTSDF 60
Query: 165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQ 223
+ + + G+ + ++ + + NH
Sbjct: 61 CQTLVQIETQLEPPKVVAIQEGQ-----------SSMADVDITPDDQFAVTVTGLNHPFN 109
Query: 224 IFDVNG--RVITSFGSEGSEEGQLKFPRGVAVDDQG--YISVGDSGNNRIQIFTPDGQ 277
+ + S + G+A+ G I + S N ++ F D
Sbjct: 110 MQSYSFLKNKFISTIPIPYD------AVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161
Score = 42.5 bits (100), Expect = 1e-04
Identities = 20/172 (11%), Positives = 50/172 (29%), Gaps = 27/172 (15%)
Query: 153 SNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTF-VGKFGSMGNKAGQLEHPHYIAVS-NTN 210
+ +N IV + + R+ F + + +G A++ + +
Sbjct: 7 TTSNFGIVVEQHLRRISFFSTDT--LEILNQITLGY------------DFVDTAITSDCS 52
Query: 211 RVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRI 269
V+V+ + + + + V + D + N+
Sbjct: 53 NVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS----MADVDITPDDQFAVTVTGLNHPF 108
Query: 270 QIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN--ILVCDRENHRIQVF 319
+ + + G+A+ NGN IL+ + ++ F
Sbjct: 109 NMQSYSFLKNKFISTIPIP----YDAVGIAISPNGNGLILIDRSSANTVRRF 156
Score = 28.2 bits (63), Expect = 3.6
Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 57 WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFL--AFTWPRGIAVGPDN 109
+A+ + + ++ + + ++V F + V GIA+ +
Sbjct: 274 GANQMALNKTETKLFISANISRELKV----FTISGKVVGYVAGIEANGGIAICHPD 325
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 71.7 bits (176), Expect = 3e-14
Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 41/226 (18%)
Query: 58 PRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNS-IV 112
P G + PD + V VA++ ++ V + D TN V A + P+G+AV PD +
Sbjct: 34 PMGAVISPDGTKVYVANAHSNDVSI----IDTATNNVIATVPAGSSPQGVAVSPDGKQVY 89
Query: 113 VADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQI 170
V + ++ + V + T G K G+ P +A+S + ++ V+++ + V +
Sbjct: 90 VTNMASSTLSVIDTTSNTVAGTV-----KTGK--SPLGLALSPDGKKLYVTNNGDKTVSV 142
Query: 171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNG 229
+ + G P IAV+ + +V V++ ++ + + D
Sbjct: 143 INT------VTKAVINTV-----SVG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189
Query: 230 RVITSFGSEGSEEGQLKFPRGVAVDDQG---YISVGDSGNNRIQIF 272
+ + P G+AV+ +G Y++ D N + +
Sbjct: 190 NSVIDTVKVEAA------PSGIAVNPEGTKAYVTNVDKYFNTVSMI 229
Score = 60.6 bits (147), Expect = 1e-10
Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 41/227 (18%)
Query: 57 WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNS-I 111
P+G+AV PD + V + ++ + V D +N V P G+A+ PD +
Sbjct: 75 SPQGVAVSPDGKQVYVTNMASSTLSV----IDTTSNTVAGTVKTGKSPLGLALSPDGKKL 130
Query: 112 VVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQ 169
V ++ + V V + G P IAV+ + +V V++ ++ +
Sbjct: 131 YVTNNGDKTVSVINTVTKAVINTV-----SVG--RSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR---VIVSDSNNHRVQIFD 226
+ D + + K P IAV+ V D + V + D
Sbjct: 184 VIDT------VTNSVIDTV-----KVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230
Query: 227 VNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIF 272
IT+ G + P G+AV D + V S N + +
Sbjct: 231 TGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSFXNTVSVI 271
Score = 47.1 bits (112), Expect = 3e-06
Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 24/131 (18%)
Query: 145 EHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY 203
+P +S + +V V++++++ V I D + + AG P
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDT------ATNNVIATV-----PAG--SSPQG 78
Query: 204 IAVS-NTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQG-YIS 260
+AVS + +V V++ + + + D + V + + S P G+A+ G +
Sbjct: 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-------PLGLALSPDGKKLY 131
Query: 261 VGDSGNNRIQI 271
V ++G+ + +
Sbjct: 132 VTNNGDKTVSV 142
Score = 43.6 bits (103), Expect = 5e-05
Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 32/169 (18%)
Query: 155 TNRVIVSDSNNHRVQIFDVNGRVFQSDGTF-VGKFGSMGNKAGQLEHPHYIAVS-NTNRV 212
+ +++S + + + DV + T VG +P +S + +V
Sbjct: 1 STFAYIANSESDNISVIDVTS--NKVTATIPVGS------------NPMGAVISPDGTKV 46
Query: 213 IVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQ 270
V++++++ V I D VI + + S P+GVAV D + V + ++ +
Sbjct: 47 YVANAHSNDVSIIDTATNNVIATVPAGSS-------PQGVAVSPDGKQVYVTNMASSTLS 99
Query: 271 IFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQV 318
+ D G +G K G+A+ +G + V + + + V
Sbjct: 100 VI--DTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSV 142
Score = 28.6 bits (64), Expect = 3.0
Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 57 WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNSIV 112
P GIAV PD + VA S + V V D TN + P + V
Sbjct: 245 DPAGIAVTPDGKKVYVALSFXNTVSV----IDTATNTITATMAVGKNPYASGQFIGSIPV 300
Query: 113 VADSSN 118
+
Sbjct: 301 QPVYPS 306
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE CIT PEG; 1.35A
{Bacteroides caccae}
Length = 276
Score = 69.9 bits (170), Expect = 6e-14
Identities = 28/262 (10%), Positives = 72/262 (27%), Gaps = 31/262 (11%)
Query: 62 AVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRG-----IAVGPDNSIVVADS 116
P + +V N + T + + +G +A I+ +
Sbjct: 1 GSSPQHLLVGGSGWNKIA-----IINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY- 54
Query: 117 SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIA-VSNTNRVIVSDSNNHRVQIFDVNG 175
+ ++ DG + A + + N ++ + + ++ G
Sbjct: 55 -SKGAKMITRDGRELWNI-----AAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKG 108
Query: 176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSF 235
V + K I + +V V+ NG+++ S
Sbjct: 109 EV-------LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSV 161
Query: 236 GSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGL 295
G+ G + + +Q+ + +R + +
Sbjct: 162 KLSGTPFSSAFLDNG------DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV 215
Query: 296 EGVAVMSNGNILVCDRENHRIQ 317
+ + NG + +C+ + H +
Sbjct: 216 AQLFPLQNGGLYICNWQGHDRE 237
Score = 59.5 bits (143), Expect = 2e-10
Identities = 29/217 (13%), Positives = 67/217 (30%), Gaps = 27/217 (12%)
Query: 104 AVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 163
P + +V N + + V ++ + + +A + ++ S S
Sbjct: 1 GSSPQHLLVGGSGWNKIAIINKDTKEIVWEY-----PLEKGWECNSVAATKAGEILFSYS 55
Query: 164 NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIA-VSNTNRVIVSDSNNHRV 222
++ +GR + A + + N ++ + +
Sbjct: 56 KG--AKMITRDGRELWN------------IAAPAGCEMQTARILPDGNALVAWCGHPSTI 101
Query: 223 QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
++ G V++ E E R + + +G V + ++ P+GQ L +
Sbjct: 102 LEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSV 161
Query: 283 GCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQVF 319
G+ A + NG+ LV + H
Sbjct: 162 KLSGTP-------FSSAFLDNGDCLVACGDAHCFVQL 191
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 67.9 bits (166), Expect = 2e-13
Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 49/234 (20%)
Query: 99 WPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 157
G+A D + D S + G L P IA+ + R
Sbjct: 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-----LGSPEGIALDHLGR 91
Query: 158 VI-VSDSNNHRVQIFDVNGR----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 212
I +DS R+++ ++G +F + L +P I
Sbjct: 92 TIFWTDSQLDRIEVAKMDGTQRRVLFDTG----------------LVNPRGIVTDPVRGN 135
Query: 213 I-VSDSNNHRVQIF--DVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNR 268
+ +D N +I ++G + L P G+ D + D+G +R
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDN-----LGLPNGLTFDAFSSQLCWVDAGTHR 190
Query: 269 IQIFTPDGQFLRAFGCWGSGDGEFKGLE---GVAVMSNGNILVCDRENHRIQVF 319
+ P R +GL+ V N+ D + + +
Sbjct: 191 AECLNPAQPGRRKV---------LEGLQYPFAVTS-YGKNLYYTDWKTNSVIAM 234
Score = 65.2 bits (159), Expect = 2e-12
Identities = 33/213 (15%), Positives = 67/213 (31%), Gaps = 34/213 (15%)
Query: 116 SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVN 174
+ +++ + + K + + +A V +D + + ++
Sbjct: 7 AQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH 66
Query: 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDVNGRVIT 233
G + T + + L P IA+ + R I +DS R+++ ++G
Sbjct: 67 G----GEPTTIIRQD--------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114
Query: 234 SFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIF--TPDGQFLRAFGCWGSGDG 290
G L PRG+ D +G + D + +I DG R
Sbjct: 115 VLFDTG-----LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA------- 162
Query: 291 EFKGLE---GVAV-MSNGNILVCDRENHRIQVF 319
L G+ + + D HR +
Sbjct: 163 -QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 64.0 bits (156), Expect = 9e-12
Identities = 31/230 (13%), Positives = 66/230 (28%), Gaps = 36/230 (15%)
Query: 58 PRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNS-IV 112
P G + + ++ N V D KT V + R V P +
Sbjct: 91 PFGATINNTTQTLWFGNTVNSAVTA----IDAKTGEVKGRLVLDDRKRTEEVRPLQPREL 146
Query: 113 VADSSNHRVQVFQSDGTFV------GKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNN 165
VAD + + V + V G + +A+ R+ ++++
Sbjct: 147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADG 206
Query: 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQI 224
+ I + ++ G+ I++ R ++DS V +
Sbjct: 207 ELITIDTADNKILSRKKLL---------DDGKEHFFINISLDTARQRAFITDSKAAEVLV 257
Query: 225 FDV-NGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIF 272
D NG ++ + V + + V ++ +
Sbjct: 258 VDTRNGNILAKVAAPE--------SLAVLFNPARNEAYVTHRQAGKVSVI 299
Score = 63.6 bits (155), Expect = 1e-11
Identities = 32/234 (13%), Positives = 72/234 (30%), Gaps = 37/234 (15%)
Query: 58 PRGIAVGPDNSIV-VADSSNHR------VQVCFPHFDLKTNCVFLAFT---WPRGIAVGP 107
+A + + +A S + + V D T V A P G +
Sbjct: 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYR----LDPVTLEVTQAIHNDLKPFGATINN 98
Query: 108 DNSIV-VADSSNHRVQVF-QSDGTFVGKFGSMGNKAGQLEHP----HYIAVSNTNRVIVS 161
+ ++ N V G G+ K + P +A TN V +S
Sbjct: 99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYIS 158
Query: 162 D-SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNN 219
+ + D ++ GK +A+ R+ ++++
Sbjct: 159 GIGKESVIWVVDGGNIKLKTAIQNTGKM------------STGLALDSEGKRLYTTNADG 206
Query: 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIF 272
+ I + ++++ +G+ F +++D + + DS + +
Sbjct: 207 ELITIDTADNKILSRKKLLD--DGKEHFFINISLDTARQRAFITDSKAAEVLVV 258
Score = 52.1 bits (125), Expect = 8e-08
Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 32/234 (13%)
Query: 100 PRGIAVGPDNSIV-VADSSNHR------VQVF-QSDGTFVGKFGSMGNKAGQLEHPHYIA 151
+A + + +A S + + V K P
Sbjct: 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI-HNDLK------PFGAT 95
Query: 152 VS-NTNRVIVSDSNNHRVQIFDV-NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209
++ T + ++ N V D G V K E +A T
Sbjct: 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRE---LVADDAT 152
Query: 210 NRVIVSD-SNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGN 266
N V +S + + D N ++ T+ + G K G+A+D + + ++
Sbjct: 153 NTVYISGIGKESVIWVVDGGNIKLKTAIQNTG------KMSTGLALDSEGKRLYTTNADG 206
Query: 267 NRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319
I I T D + L G F +++ + + D + + V
Sbjct: 207 ELITIDTADNKILSRKKLLDDGKEHF--FINISLDTARQRAFITDSKAAEVLVV 258
Score = 48.6 bits (116), Expect = 1e-06
Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 39/190 (20%)
Query: 57 WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTN------CVFLAFTWPRGIAVGPDN 109
G+A+ + + ++ + + D N + I + D
Sbjct: 186 MSTGLALDSEGKRLYTTNADGELITI-----DTADNKILSRKKLLDDGKEHFFINISLDT 240
Query: 110 S---IVVADSSNHRVQVF-QSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSN 164
+ + DS V V +G + K A + + + N V+
Sbjct: 241 ARQRAFITDSKAAEVLVVDTRNGNILAKV-----AAPE---SLAVLFNPARNEAYVTHRQ 292
Query: 165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQ 223
+V + D V F HP+ +A+S + + VS Q
Sbjct: 293 AGKVSVIDA------KSYKVVKTF-----DTPT--HPNSLALSADGKTLYVSVKQKSTKQ 339
Query: 224 IFDVNGRVIT 233
+
Sbjct: 340 QEATQPDDVI 349
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 59.3 bits (143), Expect = 3e-10
Identities = 37/230 (16%), Positives = 67/230 (29%), Gaps = 35/230 (15%)
Query: 97 FTWPRGIAVGP-DNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 155
+ N I +D S + Q D ++ P +AV
Sbjct: 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWI 87
Query: 156 NRVI-VSDSNNHRVQIFDVNGR----VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NT 209
+ I +DS V + D G +F+ + P I V
Sbjct: 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFREN----------------GSKPRAIVVDPVH 131
Query: 210 NRVIVSDSNNH-RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNN 267
+ +D +++ +NG I S +E +++P G+ +D G + DS +
Sbjct: 132 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-----IQWPNGITLDLLSGRLYWVDSKLH 186
Query: 268 RIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRIQ 317
I +G + L + + D N I
Sbjct: 187 SISSIDVNGGNRKTILEDEKRLAHPFSLA----VFEDKVFWTDIINEAIF 232
Score = 50.8 bits (121), Expect = 2e-07
Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 32/226 (14%)
Query: 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCF----PHFDLKTNCVFLAFTWPRGIAVGPDN 109
+ N I +D S + + P G+AV +
Sbjct: 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88
Query: 110 S-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHR 167
S I DS V V + G P I V + +D
Sbjct: 89 SNIYWTDSVLGTVSVADTKGVKRKTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGT-- 141
Query: 168 VQIFDVNGRVFQS--DGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQI 224
++ + +G + + ++ P+ I + + R+ DS H +
Sbjct: 142 ------PAKIKKGGLNGVDIYSLVTEN-----IQWPNGITLDLLSGRLYWVDSKLHSISS 190
Query: 225 FDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
DVNG + + +L P +AV + + D N I
Sbjct: 191 IDVNGGNRKTILEDE---KRLAHPFSLAVFE-DKVFWTDIINEAIF 232
Score = 42.7 bits (100), Expect = 7e-05
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 197 QLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDD 255
L + + +NR+ SD + + ++ S ++ P G+AVD
Sbjct: 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDW 86
Query: 256 Q-GYISVGDSGNNRIQIFTPDGQFLR 280
I DS + + G +
Sbjct: 87 IHSNIYWTDSVLGTVSVADTKGVKRK 112
Score = 40.4 bits (94), Expect = 5e-04
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 9/104 (8%)
Query: 217 SNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPD 275
+N H V+ ++ TS L+ + + I D I D
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIP------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60
Query: 276 GQFLRAFGCWGSGDGEFKGLEGVAV-MSNGNILVCDRENHRIQV 318
+ + +G+AV + NI D + V
Sbjct: 61 RAHGVSSYDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSV 103
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 58.9 bits (142), Expect = 5e-10
Identities = 30/239 (12%), Positives = 72/239 (30%), Gaps = 22/239 (9%)
Query: 54 CFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVV 113
FT PR I D V ++R+ + + KT + P +V
Sbjct: 82 GFTSPRYIHFLSDEKAYVTQIWDYRIFI----INPKTYEITGYIECPDMDMESGSTEQMV 137
Query: 114 ADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLE---HPHYIAVSNTNRVIVSDSNNHRVQI 170
V + + +L P + + N++ +
Sbjct: 138 QYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSP 197
Query: 171 FDV-NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVN 228
+ +++ D K G + P + ++ + + +++ R+ +
Sbjct: 198 YGYEAPSLYRIDAETFTVEKQFKFKLG--DWPSEVQLNGTRDTLYWINNDIWRMPVEADR 255
Query: 229 GRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSG----NNRIQIFTPDGQFLRAF 282
V ++ G+ V+ + G + V D+ + ++P G+ + F
Sbjct: 256 VPVRPFLEFRDTK------YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEF 308
Score = 50.8 bits (121), Expect = 2e-07
Identities = 26/229 (11%), Positives = 64/229 (27%), Gaps = 27/229 (11%)
Query: 58 PRGIAVGP------DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
+ D + +++H + + K FT PR I D
Sbjct: 39 GFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINT-FKEVGRITGFTSPRYIHFLSDEKA 97
Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 171
V ++R+ + + + + + + + S +R+
Sbjct: 98 YVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKI 157
Query: 172 DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
D + T +G P + + N++ + +
Sbjct: 158 DTETDKVVDELT-IGI------------QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS 204
Query: 232 ITSFGSE-GSEEGQLKF-----PRGVAVD-DQGYISVGDSGNNRIQIFT 273
+ +E + E Q KF P V ++ + + ++ R+ +
Sbjct: 205 LYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEA 253
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 57.2 bits (138), Expect = 2e-09
Identities = 27/274 (9%), Positives = 77/274 (28%), Gaps = 67/274 (24%)
Query: 58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV--------FLAFTWPRGIAVGPDN 109
P+ + + + + + + V D+ + + P++
Sbjct: 125 PKSVRFIDNTRLAIPLLEDEGMDV----LDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180
Query: 110 S-IVVADSSNHRVQVF-QSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNH 166
+ + V+ + V VF + G + + + V S+ +
Sbjct: 181 NELWVSQMQANAVHVFDLKTLAYKATVDLTG------KWSKILLYDPIRDLVYCSNWISE 234
Query: 167 RVQIFDVNGR---------------VFQSDGT--FVGKFGSMGNKAGQLE---------- 199
+ + D + + DG ++ +F + ++G
Sbjct: 235 DISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK 294
Query: 200 ---------HPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPR 249
+ +I N++ VSD +++++D+ + + + P
Sbjct: 295 LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDK------PN 348
Query: 250 GVAVDDQG---YISVGDSGNNRIQIFTPDGQFLR 280
+A+ G Y+S + +
Sbjct: 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK 382
Score = 52.2 bits (125), Expect = 1e-07
Identities = 40/249 (16%), Positives = 84/249 (33%), Gaps = 58/249 (23%)
Query: 57 WPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCV---FLAFTWPRGIAVGPDNS-I 111
W + + P +V ++ + + V D KT PRG+ + D +
Sbjct: 213 WSKILLYDPIRDLVYCSNWISEDISV----IDRKTKLEIRKTDKIGLPRGLLLSKDGKEL 268
Query: 112 VVAD-------SSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDS 163
+A S R+ ++ D + + +I N++ VSD
Sbjct: 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG------NKRHIVSGNTENKIYVSDM 322
Query: 164 NNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNH-- 220
+++++D+ + + P+ IA+S + + VS +
Sbjct: 323 CCSKIEVYDL------KEKKVQKSI-----PVF--DKPNTIALSPDGKYLYVSCRGPNHP 369
Query: 221 ------------RVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNN 267
+V + D + F G P G+ V D Y+ + D ++
Sbjct: 370 TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG------NQPTGLDVSPDNRYLVISDFLDH 423
Query: 268 RIQIFTPDG 276
+I+++ DG
Sbjct: 424 QIRVYRRDG 432
Score = 51.4 bits (123), Expect = 2e-07
Identities = 23/219 (10%), Positives = 63/219 (28%), Gaps = 25/219 (11%)
Query: 108 DNSIVVADSSNHRVQVFQSDGT----FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 163
+++ +V + D + K +L+ +++ R+ +
Sbjct: 39 KGTVIRLGEEILPFKVLEMDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEE 98
Query: 164 NNHRVQIFDVNGRVFQSDGTF-VGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 222
N ++ D G + F G P + + R+ + + +
Sbjct: 99 LNEKLIALDKEGITHRFISRFKTGF------------QPKSVRFIDNTRLAIPLLEDEGM 146
Query: 223 QIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIF-TPDGQFLRA 281
+ D+N + +L F +++ + + V N + +F +
Sbjct: 147 DVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT 206
Query: 282 FGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319
G K + + + + + + I V
Sbjct: 207 VDLTG------KWSKILLYDPIRDLVYCSNWISEDISVI 239
Score = 35.7 bits (82), Expect = 0.019
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 56 TWPRGIAVGPDNS-IVVADS-SNHRVQVCFPH---------FDLKTNCV---FLAFTWPR 101
P IA+ PD + V+ NH + D T+ V + A P
Sbjct: 345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPT 404
Query: 102 GIAVGPDNS-IVVADSSNHRVQVFQSDG 128
G+ V PDN +V++D +H+++V++ DG
Sbjct: 405 GLDVSPDNRYLVISDFLDHQIRVYRRDG 432
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 56.7 bits (136), Expect = 2e-09
Identities = 44/312 (14%), Positives = 82/312 (26%), Gaps = 35/312 (11%)
Query: 19 LLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHR 78
L +S + L + L G+ F GI + + + D+ N
Sbjct: 30 LFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ- 88
Query: 79 VQVCFPH---FDLKTNCVFLAFTWPRGIAVGPD--NSIVVADSSNHRVQVFQSDGTFVGK 133
P +D N + P I + N + V N V+ SD
Sbjct: 89 -SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNF---VYISD------ 138
Query: 134 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN 193
+ I V + + DG V G
Sbjct: 139 -------PAPDDKAALIRVDLQTGLAARVLQGYPG--IAPEDIDLVIDGVPVQIGQPDGT 189
Query: 194 KAGQLEHPHYIAVSNTNRVI-VSDSNNHRV-----QIFDVNGRVITSFGSEGSEEGQLKF 247
+ I + N + +S ++ + GS+ +
Sbjct: 190 VIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI 249
Query: 248 PRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNIL 307
G+++D I VGD ++ I + T + + D + + S+G +
Sbjct: 250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL----VTDEKLSWTDSFNFGSDGYLY 305
Query: 308 VCDRENHRIQVF 319
+ H
Sbjct: 306 FDCNQLHHSAPL 317
Score = 39.4 bits (91), Expect = 9e-04
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 44 KIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCV-----FLAFT 98
++GS+ GI++ D++I V D ++ + V +
Sbjct: 236 ELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGV----ITSADRAYKLLVTDEKLS 291
Query: 99 WPRGIAVGPDNSIVVADSSNHRVQVFQ 125
W G D + + H
Sbjct: 292 WTDSFNFGSDGYLYFDCNQLHHSAPLN 318
Score = 36.3 bits (83), Expect = 0.009
Identities = 36/259 (13%), Positives = 75/259 (28%), Gaps = 40/259 (15%)
Query: 99 WPRGIAVGPDNSIVVA--DSSNHRVQVFQSDGTFVGKFGSM-GNKAGQLEHPHYIAVSNT 155
P I + PD + ++ +QV + + F GN + I
Sbjct: 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGN 77
Query: 156 NRVIVSDSNNH-----RVQIFDVNG----RVFQSDGTFVGKFGSMGNKAGQLEHPH-YIA 205
V + D+ N ++ +D RV + + A L H YI+
Sbjct: 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS 137
Query: 206 VS---NTNRVIVSDSNNHRV--------------QIFDVNGRVITSFGSEGSEEGQLKFP 248
+ +I D ++G + +G+
Sbjct: 138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGV 197
Query: 249 RGVAVD-DQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSG-------DGEFKGLEGVAV 300
G+ +D + ++ + + ++ L + E +G+++
Sbjct: 198 NGIVLDAENEWLYLSPMHSTS--MYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255
Query: 301 MSNGNILVCDRENHRIQVF 319
+ NI V D + I V
Sbjct: 256 DKDHNIYVGDLAHSAIGVI 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural
genomics, midwest center for structu genomics,
TOLB-like, Ca binding; 2.55A {Escherichia coli}
Length = 255
Score = 55.8 bits (134), Expect = 3e-09
Identities = 33/229 (14%), Positives = 73/229 (31%), Gaps = 21/229 (9%)
Query: 102 GIAVGPD-NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 160
+ N++ + + ++G + K I N+ ++
Sbjct: 31 SLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVK-----DLETIEYIGDNQFVI 85
Query: 161 SDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 220
SD ++ + + + + E Y + N
Sbjct: 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR--QDHTFWFFKEKN- 142
Query: 221 RVQIFDVNGRVITSFGSEGSEEGQLKFPR------GVAVDDQ-GYISVGDSGNNRIQIFT 273
++++ VNG +++S S++ L+ G + Q + V + +Q T
Sbjct: 143 PIEVYKVNG-LLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVT 201
Query: 274 PDGQFLRAFGCWGSGDGEFKGL---EGVAVMSNGNILVCDRENHRIQVF 319
G+ + G + EGVA+ ++GNI + E +R F
Sbjct: 202 LVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPNRFYRF 249
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 56.8 bits (136), Expect = 4e-09
Identities = 34/224 (15%), Positives = 66/224 (29%), Gaps = 26/224 (11%)
Query: 57 WPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS-IVVA 114
I P + I D ++ F V P GIAV +
Sbjct: 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWT 409
Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDV 173
D+ R++V + +GT S LE P I + + +D I
Sbjct: 410 DTGTDRIEVTRLNGTMRKILISED-----LEEPRAIVLDPMVGYMYWTDWGEIPK-IERA 463
Query: 174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRVI 232
DG+ + L P+ +A+ + ++ D+ ++++ + +G
Sbjct: 464 AL-----DGSDRVVLVNTS-----LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513
Query: 233 TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
+ + G + Y+ D I+
Sbjct: 514 RVLVEDK-----IPHIFGFTLLG-DYVYWTDWQRRSIERVHKRS 551
Score = 52.5 bits (125), Expect = 7e-08
Identities = 24/180 (13%), Positives = 60/180 (33%), Gaps = 22/180 (12%)
Query: 55 FTWPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS-IV 112
P GIAV + D+ R++V + ++ + PR I + P +
Sbjct: 391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY 450
Query: 113 VADS-SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQI 170
D +++ DG+ + L P+ +A+ + ++ D+ ++++
Sbjct: 451 WTDWGEIPKIERAALDGSDRVVLVNTS-----LGWPNGLALDYDEGKIYWGDAKTDKIEV 505
Query: 171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGR 230
+ +G + V ++ H + + V +D ++
Sbjct: 506 MNTDGTGRR---VLV---------EDKIPHIFGFTLLG-DYVYWTDWQRRSIERVHKRSA 552
Score = 51.4 bits (122), Expect = 2e-07
Identities = 29/219 (13%), Positives = 75/219 (34%), Gaps = 29/219 (13%)
Query: 58 PRGIAVGP-DNSIVVADSSNHRVQVCFPH-FDLKTNCVFLAFTWPRGIAVGPDNSIV-VA 114
+ I +D S ++ + + N V P G+A +
Sbjct: 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWT 101
Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSN-NHRVQIFD 172
DS +R++V DG+ +L+ P IA+ ++ + +D +++
Sbjct: 102 DSETNRIEVSNLDGSLRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 156
Query: 173 VNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRV 231
++G S + ++ P+ + + ++ +D+ + + +++G
Sbjct: 157 MDGS---SRFIIINS---------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT- 203
Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
+ +G L P + + + + D + I
Sbjct: 204 ----NRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSIL 237
Score = 49.8 bits (118), Expect = 6e-07
Identities = 42/306 (13%), Positives = 86/306 (28%), Gaps = 57/306 (18%)
Query: 56 TWPRGIAVGPDNSIV-VAD-SSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS-IV 112
PR IA+ P + + D +++ + + WP G+ + + +
Sbjct: 127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLY 186
Query: 113 VADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 172
AD+ + + DGT G L HP + + + + +D + H + +
Sbjct: 187 WADAKLNFIHKSNLDGT-----NRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACN 240
Query: 173 VNG----RVFQSDGTFV----------------------------------GKFGSMGNK 194
R SD F
Sbjct: 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 300
Query: 195 AGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD 254
G + + ++ + ++ ++ T + ++ + D
Sbjct: 301 TGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLE---DIRHAIAIDYD 357
Query: 255 -DQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAV-MSNGNILVCDRE 312
+GYI D I+ DG + + +G+AV N+ D
Sbjct: 358 PVEGYIYWTDDEVRAIRRSFIDGSGSQFV-----VTAQIAHPDGIAVDWVARNLYWTDTG 412
Query: 313 NHRIQV 318
RI+V
Sbjct: 413 TDRIEV 418
Score = 49.4 bits (117), Expect = 8e-07
Identities = 38/295 (12%), Positives = 84/295 (28%), Gaps = 39/295 (13%)
Query: 57 WPRGIAVGPDNS-IVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPD------- 108
WP G+ + + + AD+ + + + V + P + + D
Sbjct: 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDW 231
Query: 109 --NSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT--NRVIVSDSN 164
+SI+ + F ++ Q + + N + + +
Sbjct: 232 STHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPV 291
Query: 165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS--------- 215
Q G +G + + I++ + +
Sbjct: 292 KPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHA 351
Query: 216 -----DSNNHRVQIFDVNGRVITSFGSEGSE-----EGQLKFPRGVAVD-DQGYISVGDS 264
D + D R I +GS Q+ P G+AVD + D+
Sbjct: 352 IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDT 411
Query: 265 GNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVM-SNGNILVCD-RENHRIQ 317
G +RI++ +G + + + + + G + D E +I+
Sbjct: 412 GTDRIEVTRLNGTMRKIL-----ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIE 461
Score = 44.4 bits (104), Expect = 3e-05
Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 20/139 (14%)
Query: 142 GQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEH 200
G LE + + + SD + ++ + N + G L
Sbjct: 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-----------LLS 85
Query: 201 PHYIAVSNTNRVI-VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGY 258
P +A + +DS +R+++ +++G + + L PR +A+D G+
Sbjct: 86 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE-----LDQPRAIALDPSSGF 140
Query: 259 ISVGDSGNN-RIQIFTPDG 276
+ D G +I+ DG
Sbjct: 141 MYWTDWGEVPKIERAGMDG 159
Score = 37.9 bits (87), Expect = 0.004
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 196 GQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD 254
G LE + + + SD + ++ + N + + L P G+A D
Sbjct: 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK----TESVQNVVVSGLLSPDGLACD 92
Query: 255 DQ-GYISVGDSGNNRIQIFTPDGQFLR 280
+ DS NRI++ DG +
Sbjct: 93 WLGEKLYWTDSETNRIEVSNLDGSLRK 119
Score = 28.6 bits (63), Expect = 3.2
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 18/84 (21%)
Query: 243 GQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE---FKGL--- 295
G L+ V G I D I+ + + GL
Sbjct: 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF----------NKTESVQNVVVSGLLSP 86
Query: 296 EGVAV-MSNGNILVCDRENHRIQV 318
+G+A + D E +RI+V
Sbjct: 87 DGLACDWLGEKLYWTDSETNRIEV 110
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 54.0 bits (129), Expect = 2e-08
Identities = 20/213 (9%), Positives = 52/213 (24%), Gaps = 17/213 (7%)
Query: 58 PRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIV 112
G A+ + ++ + + + V D+ ++ V+ + P + PDN
Sbjct: 2 DTGPALKAGHEYMIVTNYPNNLHV----VDVASDTVYKSCVMPDKFGPGTAMMAPDNRTA 57
Query: 113 -VADSSNHRVQVF-QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR--VIVSDSNNHRV 168
V ++ + + A+S + +
Sbjct: 58 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN 117
Query: 169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 228
+ V + T G + + ++ + V+ + DV
Sbjct: 118 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVK 174
Query: 229 -GRVITSFGSEGSEEGQLKFPRGVAVDDQGYIS 260
G+ + P +
Sbjct: 175 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 207
Score = 42.4 bits (99), Expect = 1e-04
Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 20/175 (11%)
Query: 100 PRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRV 158
G A+ + ++ + + + V V K M +K G P ++ +
Sbjct: 2 DTGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG----PGTAMMAPDNRTA 57
Query: 159 IVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR---VIVS 215
V +++ + D+ + A+S + V+
Sbjct: 58 YVLNNHYGDIYGIDL------DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 111
Query: 216 DSNNHRVQIFDVNGRVI---TSFGSEGSEEGQLKFPRG---VAVDDQGYISVGDS 264
+ R+ T+ G E PR + D G + V
Sbjct: 112 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP 166
Score = 27.0 bits (59), Expect = 9.2
Identities = 30/253 (11%), Positives = 57/253 (22%), Gaps = 28/253 (11%)
Query: 36 LQKRRLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVF- 94
L + F A+ PD V A + + VF
Sbjct: 72 LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFS 131
Query: 95 ---LAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSD--------GTFVGKFGSMGNKAGQ 143
P P ++ + + + V D G +
Sbjct: 132 TADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKG 191
Query: 144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKF--------GSMGNKA 195
P + S + + F + + + G A
Sbjct: 192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 251
Query: 196 GQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD- 254
E S + + N R+ +D+ R + + VA D
Sbjct: 252 DLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAANLD------HTYYCVAFDK 304
Query: 255 DQGYISVGDSGNN 267
+ +G + N+
Sbjct: 305 KGDKLYLGGTFND 317
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 52.4 bits (125), Expect = 5e-08
Identities = 29/221 (13%), Positives = 74/221 (33%), Gaps = 29/221 (13%)
Query: 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPH-FDLKTNCVFLAFTWPRGIAVGPDNSIV 112
+ I +D S ++ + + N V P G+A +
Sbjct: 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 93
Query: 113 -VADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNH-RVQ 169
DS +R++V DG+ +L+ P IA+ ++ + +D +++
Sbjct: 94 YWTDSETNRIEVSNLDGSLRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIE 148
Query: 170 IFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVN 228
++G S + ++ P+ + + ++ +D+ + + +++
Sbjct: 149 RAGMDGS---SRFIII---------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196
Query: 229 GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRI 269
G + G L P + + + + D + I
Sbjct: 197 GTNRQAVVK-----GSLPHPFALTLFE-DILYWTDWSTHSI 231
Score = 45.8 bits (108), Expect = 8e-06
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 53 GCFTWPRGIAVGPDNS-IVVADSSNH-RVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS 110
PR IA+ P + + D +++ + + WP G+ + +
Sbjct: 119 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 178
Query: 111 -IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQ 169
+ AD+ + + DGT G L HP + + + + +D + H +
Sbjct: 179 KLYWADAKLNFIHKSNLDGTNRQAV-----VKGSLPHPFALTLFE-DILYWTDWSTHSIL 232
Query: 170 IFD 172
+
Sbjct: 233 ACN 235
Score = 37.7 bits (87), Expect = 0.003
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 196 GQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD 254
G LE + + + SD + ++ + N + + L P G+A D
Sbjct: 32 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK----TESVQNVVVSGLLSPDGLACD 87
Query: 255 DQ-GYISVGDSGNNRIQIFTPDGQFLR 280
+ DS NRI++ DG +
Sbjct: 88 WLGEKLYWTDSETNRIEVSNLDGSLRK 114
Score = 28.9 bits (64), Expect = 2.1
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 18/84 (21%)
Query: 243 GQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGE------FKGL 295
G L+ V G I D I+ + + +
Sbjct: 32 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK----------TESVQNVVVSGLLSP 81
Query: 296 EGVAV-MSNGNILVCDRENHRIQV 318
+G+A + D E +RI+V
Sbjct: 82 DGLACDWLGEKLYWTDSETNRIEV 105
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 51.6 bits (124), Expect = 1e-07
Identities = 39/238 (16%), Positives = 81/238 (34%), Gaps = 26/238 (10%)
Query: 55 FTWPRG-IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVV 113
FTW G + V ++++ +D +R D + + G + ++
Sbjct: 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSD--DGQLSPEMHPSHHQNGHCLNKQGHLIA 84
Query: 114 ADSSNHRVQVF-QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 172
R++ + G + S K +L P+ + ++ + SD + +
Sbjct: 85 CSHGLRRLERQREPGGEWESIADSFEGK--KLNSPNDVCLAPDGSLWFSDPTYGIDKPEE 142
Query: 173 VNGRVFQSDGTFVGKFGSMGN---KAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-- 227
G + G +V + G P+ +A + ++VSD+ ++ + +
Sbjct: 143 GYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA 202
Query: 228 -----NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
V + G G+ VD G I S + + + TPDG L
Sbjct: 203 RGETEYQGVHFTVE-PG-------KTDGLRVDAGGLIWA--SAGDGVHVLTPDGDELG 250
Score = 31.6 bits (72), Expect = 0.30
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 55 FTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNC------VFLAFT--WPRGIAVG 106
P G+A P +++V+D+ ++ + L V G+ V
Sbjct: 171 RVKPNGLAFLPSGNLLVSDTGDNATHR----YCLNARGETEYQGVHFTVEPGKTDGLRVD 226
Query: 107 PDNSIVVADSSNHRVQVFQSDGTFVGK 133
I + + V V DG +G+
Sbjct: 227 AGGLIWAS--AGDGVHVLTPDGDELGR 251
Score = 27.3 bits (61), Expect = 7.6
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 13/72 (18%)
Query: 251 VAVDDQGYISVGDSGNNRIQIFTPDGQ---FLRAFGCWGSGDGEFKGLEGVAVMSNGNIL 307
V V + + D NR ++ DGQ + G + G+++
Sbjct: 34 VYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN----------GHCLNKQGHLI 83
Query: 308 VCDRENHRIQVF 319
C R++
Sbjct: 84 ACSHGLRRLERQ 95
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 49.8 bits (118), Expect = 6e-07
Identities = 36/232 (15%), Positives = 73/232 (31%), Gaps = 31/232 (13%)
Query: 55 FTWPRGIAVGP-DNSIVVADSSNHRVQVCFPH------FDLKTNCVFLAFTWPRGIAVGP 107
R I P D + DS + ++ + + P +++
Sbjct: 339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI 398
Query: 108 DNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNN 165
+ I + + + V + DG VG G+ + P + V + ++
Sbjct: 399 YSRYIYWTCEATNVINVTRLDGRSVGVVLK-----GEQDRPRAVVVNPEKGYMYFTNLQE 453
Query: 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQI 224
+I DGT G L P +A+ S ++ +DS+ R++
Sbjct: 454 RSPKIERAA-----LDGTEREVLFFSG-----LSKPIALALDSRLGKLFWADSDLRRIES 503
Query: 225 FDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDG 276
D++G + P G+ V + ++ D I+ G
Sbjct: 504 SDLSGANRIVLED-----SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTG 549
Score = 46.3 bits (109), Expect = 8e-06
Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 26/217 (11%)
Query: 57 WPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNS-IVVA 114
+ DN I D S + F + + V +P G+AV + A
Sbjct: 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWA 97
Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 174
D+ +R++V + DG L+ P +A+ + + +I
Sbjct: 98 DTGTNRIEVSKLDGQHRQVLVWKD-----LDSPRALALDPAEGFMYWTEWGGKPKIDRAA 152
Query: 175 GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRVIT 233
DG+ + + + + R+ +D + + ++ ++ G
Sbjct: 153 -----MDGSERTTL------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE 201
Query: 234 SFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
L P G+ YI D I+
Sbjct: 202 VIAD------DLPHPFGLTQYQD-YIYWTDWSRRSIE 231
Score = 42.9 bits (100), Expect = 1e-04
Identities = 28/299 (9%), Positives = 73/299 (24%), Gaps = 44/299 (14%)
Query: 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLA-FTWPRGIAVGPDNS-IVVA 114
PR +A+ P + + ++ D + G+ + +
Sbjct: 124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWT 183
Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN 174
D + ++ G L HP + + + +D + ++ +
Sbjct: 184 DLDTNLIESSNMLGLNREVIAD------DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236
Query: 175 G----RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV-------- 222
+ Q +V + + + + + + ++ V
Sbjct: 237 SGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYS 296
Query: 223 -------------QIFDVNGRVITSFGSEGSEE-------GQLKFPRGVAVDDQ-GYISV 261
+ I + + L+ R + D +
Sbjct: 297 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 356
Query: 262 GDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGL-EGVAV-MSNGNILVCDRENHRIQV 318
DS N I+ DG + +++ + + I + I V
Sbjct: 357 IDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINV 415
Score = 42.5 bits (99), Expect = 1e-04
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 197 QLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNG-RVITSFGSEGSEEGQLKFPRGVAVD 254
L + I ++ DS + ++ +G + T S + P +++D
Sbjct: 338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397
Query: 255 D-QGYISVGDSGNNRIQIFTPDGQFLR 280
YI N I + DG+ +
Sbjct: 398 IYSRYIYWTCEATNVINVTRLDGRSVG 424
Score = 40.2 bits (93), Expect = 6e-04
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 196 GQLEHPHYIAV-SNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD 254
++ + NR+ +D + + +NG + G L +P G+AVD
Sbjct: 34 TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-----LDYPEGMAVD 88
Query: 255 DQG---YISVGDSGNNRIQIFTPDGQFLR 280
G Y + D+G NRI++ DGQ +
Sbjct: 89 WLGKNLYWA--DTGTNRIEVSKLDGQHRQ 115
Score = 34.0 bits (77), Expect = 0.063
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 11/104 (10%)
Query: 217 SNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPD 275
S ++ + +K + D I D I +
Sbjct: 12 SRRADIRRISLETNNNNV----AIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67
Query: 276 GQFLRAFGCWGSGDGEFKGLEGVAV-MSNGNILVCDRENHRIQV 318
G L +G EG+AV N+ D +RI+V
Sbjct: 68 GSALEHVVEFG-----LDYPEGMAVDWLGKNLYWADTGTNRIEV 106
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
structural genomics, PSI-2, protein structure
initiative; 1.96A {Lactobacillus plantarum}
Length = 347
Score = 48.2 bits (115), Expect = 1e-06
Identities = 46/280 (16%), Positives = 87/280 (31%), Gaps = 69/280 (24%)
Query: 61 IAVGPDNSIVVADSSNHRVQVCFPHFD----LKTNCVFLAFTWPRGIAVGPDNS-IVVAD 115
+A+ + + D + + D K N V T P +AV + A+
Sbjct: 45 LALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSAN 104
Query: 116 SSNHRVQVF--QSDGT-----FVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV 168
+V +DG V G H HY ++ NR+ V D + +V
Sbjct: 105 YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV 164
Query: 169 QIFDVNGR--------------------VFQSDGTFVGKFGSMGN---------KAGQLE 199
+++V+ VF DG + G + + + G
Sbjct: 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224
Query: 200 H----------------PHYIAVSNTNR-VIVSDSNNHRVQIFDVNG----RVITSFGSE 238
I +S+ + VS+ + + +F V +I +E
Sbjct: 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE 284
Query: 239 GSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDGQ 277
G FPR +D + ++ V + + ++ D
Sbjct: 285 G------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT 318
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 48.7 bits (116), Expect = 1e-06
Identities = 36/273 (13%), Positives = 81/273 (29%), Gaps = 73/273 (26%)
Query: 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIV 112
+ P + + V S + V++ +++ + W G+ PD S
Sbjct: 842 TIQYCDFSPYDHLAVIALSQYCVEL----WNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897
Query: 113 VADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFD 172
+ S + ++V+++ N A L+ + ++++ N +Q+
Sbjct: 898 LTASDDQTIRVWETKKVCK-------NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950
Query: 173 V-NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NGR 230
G++ V +S + + ++I ++ N R
Sbjct: 951 GKTGQIDYLPEAQV----------------SCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994
Query: 231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGC------ 284
V +S G K R + FT DG+ L
Sbjct: 995 VFSSG------VGHKKAVRHIQ-------------------FTADGKTL-ISSSEDSVIQ 1028
Query: 285 -WGSGDGEFKGLEG-------VAVMSNGNILVC 309
W G++ L+ ++ + +L
Sbjct: 1029 VWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSW 1061
Score = 38.7 bits (90), Expect = 0.002
Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 71/249 (28%)
Query: 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIV 112
+ P V + +++ +L N VF + R I D +
Sbjct: 963 QVSCCCLSPHLEYVAFGDEDGAIKII----ELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018
Query: 113 VADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSNNHRVQ 169
++ S + +QV+ G+ H + + +R ++S S + V+
Sbjct: 1019 ISSSEDSVIQVWNWQT---------GDYVFLQAHQETVKDFRLLQDSR-LLSWSFDGTVK 1068
Query: 170 IFDVN-GRVFQSDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSNNHRVQIF 225
+++V GR+ + F H + A+S+ S S + +I+
Sbjct: 1069 VWNVITGRIER---DFTC-------------HQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 226 DV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGC 284
+ +G R A F+ DG L
Sbjct: 1113 SFDLLSPLHEL------KGHNGCVRCSA-------------------FSLDGILLAT--- 1144
Query: 285 WGSGDGEFK 293
G +GE +
Sbjct: 1145 -GDDNGEIR 1152
Score = 35.6 bits (82), Expect = 0.021
Identities = 31/250 (12%), Positives = 74/250 (29%), Gaps = 71/250 (28%)
Query: 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIV 112
+ + D+ ++ S + V+V ++ T + FT A+ D +
Sbjct: 1046 TVKDFRLLQDSRLLSW-SFDGTVKVW----NVITGRIERDFTCHQGTVLSCAISSDATKF 1100
Query: 113 VADSSNHRVQV-----FQSDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSN 164
+ S++ ++ G H + A S ++ + +
Sbjct: 1101 SSTSADKTAKIWSFDLLSPLHELKG-------------HNGCVRCSAFSLDGILLATGDD 1147
Query: 165 NHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSNNHR 221
N ++I++V SDG + + + G H ++ S ++ +VS
Sbjct: 1148 NGEIRIWNV------SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY-- 1199
Query: 222 VQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
++ ++V G +F + + +PD +
Sbjct: 1200 LKWWNVATGDSSQTF------YTNGTNLKKIH-------------------VSPDFRTYV 1234
Query: 281 AFGCWGSGDG 290
G
Sbjct: 1235 T----VDNLG 1240
Score = 32.9 bits (75), Expect = 0.14
Identities = 26/182 (14%), Positives = 56/182 (30%), Gaps = 32/182 (17%)
Query: 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIV 112
A+ D + + S++ ++ + R A D ++
Sbjct: 1087 TVLSCAISSDATKFSSTSADKTAKI----WSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1142
Query: 113 VADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSNNHRV 168
N ++++ SDG + + + G H ++ S ++ +VS +
Sbjct: 1143 ATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY--L 1200
Query: 169 QIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSNNHRVQIF 225
+ ++V S TF + + VS R V+ N + I
Sbjct: 1201 KWWNVATG--DSSQTFYT-------------NGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245
Query: 226 DV 227
V
Sbjct: 1246 QV 1247
Score = 30.2 bits (68), Expect = 1.1
Identities = 30/206 (14%), Positives = 68/206 (33%), Gaps = 65/206 (31%)
Query: 99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLE-HPHYI---AVSN 154
D + + ++ +QVF+++ G K ++ H + A S+
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAET---------GEKLLDIKAHEDEVLCCAFSS 667
Query: 155 TNRVIVSDSNNHRVQIFDV-NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTN 210
+ I + S + +V+I+D G++ T+ H + +N +
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVH---TYDE-------------HSEQVNCCHFTNKS 711
Query: 211 R--VIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN 267
++ + SN+ ++++D+N + G
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQKECRNTM------FGHTNSVNHCR--------------- 750
Query: 268 RIQIFTPDGQFLRAFGCWGSGDGEFK 293
F+PD + L + S DG +
Sbjct: 751 ----FSPDDELLAS----CSADGTLR 768
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 47.0 bits (112), Expect = 3e-06
Identities = 34/247 (13%), Positives = 70/247 (28%), Gaps = 63/247 (25%)
Query: 50 SEPGCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDN 109
G P G D + + + V +A G
Sbjct: 65 EVNGYGGIPAGCQCDRDANQLFVADMRLGLLV----VQTDGTFEEIAKKDSEG---RRMQ 117
Query: 110 SI--VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHR 167
D +G + + ++ +
Sbjct: 118 GCNDCAFDY----------EGNLW--ITAPAGEVAPADYTRSMQ---------------- 149
Query: 168 VQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN-----RVIVSDSNNHRV 222
+ G ++ G M + P+ IAV + N ++IV+++ ++
Sbjct: 150 ----EKFGSIYCFTTD-----GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 200
Query: 223 QIFDV-------NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD 275
+D+ N +V G+ EG G+ D+ + V + G++ I++F PD
Sbjct: 201 WSYDIKGPAKIENKKVWGHI--PGTHEG---GADGMDFDEDNNLLVANWGSSHIEVFGPD 255
Query: 276 GQFLRAF 282
G +
Sbjct: 256 GGQPKMR 262
Score = 30.1 bits (68), Expect = 0.86
Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 58/230 (25%)
Query: 99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 158
P G D + + + V Q+DGTF +
Sbjct: 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFE-------------------------EI 106
Query: 159 IVSDSNNHRVQIF-DVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDS 217
DS R+Q D F +G + + ++ + +
Sbjct: 107 AKKDSEGRRMQGCNDC---AFDYEGNLW--ITAPAGEVAPADYTRSMQ-EKFGSIYC--- 157
Query: 218 NNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAV-----DDQGYISVGDSGNNRIQIF 272
F +G++I + +FP G+AV + V ++ ++ +
Sbjct: 158 -------FTTDGQMIQ-------VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSY 203
Query: 273 --TPDGQFLRAFGCWGSGDGEFKGL-EGVAVMSNGNILVCDRENHRIQVF 319
+ + WG G +G +G+ + N+LV + + I+VF
Sbjct: 204 DIKGPAK-IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 46.7 bits (111), Expect = 4e-06
Identities = 28/229 (12%), Positives = 52/229 (22%), Gaps = 54/229 (23%)
Query: 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADS 116
P I + D + V + + + A + +V
Sbjct: 88 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD-NLQDIIEDLSTAYCI-DDMVFD-- 143
Query: 117 SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV--IVSDSNNHRVQIFDV- 173
S G F F + V + D I ++
Sbjct: 144 ---------SKGGFY--FTDFRGYSTN----------PLGGVYYVSPDFRTVTPIIQNIS 182
Query: 174 --NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 231
NG +D + ++ + NR+ + V I +
Sbjct: 183 VANGIALSTDEKVL-----------------WVTETTANRLHRIALEDDGVTIQPFGATI 225
Query: 232 ITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLR 280
F P +D + V G R+ +F G +
Sbjct: 226 PYYFTGHE-------GPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIG 267
Score = 31.6 bits (72), Expect = 0.27
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 55 FTWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTN---------CVFLAFTWPR--- 101
+ GIA+ D ++ V +++ +R+ L+ + + FT
Sbjct: 181 ISVANGIALSTDEKVLWVTETTANRLHR----IALEDDGVTIQPFGATIPYYFTGHEGPD 236
Query: 102 GIAVGPDNSIVVADSSNHRVQVFQSDGTFVGK 133
+ D+++ VA RV VF G +G+
Sbjct: 237 SCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQ 268
Score = 27.0 bits (60), Expect = 8.3
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 266 NNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRENHRI 316
N+ + I + W + LEG+ G + + D I
Sbjct: 18 NSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNI 68
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 46.4 bits (109), Expect = 6e-06
Identities = 45/280 (16%), Positives = 77/280 (27%), Gaps = 35/280 (12%)
Query: 2 CIPSEAKNINSCFLLQTLLVSGIGQVGTTPRSQYLQKRRLQFKIGSRGSE-----PGCFT 56
C SE C L P L R+ +
Sbjct: 14 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 73
Query: 57 WPRGIAVGP-DNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIV-VA 114
+ + +D + R+ + V P G+AV + +
Sbjct: 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 133
Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVI-VSDSNNHRVQIFDV 173
DS R++V DG LE P IA+ I +D N
Sbjct: 134 DSGTSRIEVANLDGAHRKVLLWQS-----LEKPRAIALHPMEGTIYWTDWGN-------- 180
Query: 174 NGRVFQS--DGTFVGKFGSMGNKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGR 230
R+ S DG+ L P+ + + R+ D+ +H ++ +++G
Sbjct: 181 TPRIEASSMDGSGRRIIADTH-----LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235
Query: 231 VITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQ 270
+ S L P + V + + D I
Sbjct: 236 HRKAVIS-----QGLPHPFAITVFE-DSLYWTDWHTKSIN 269
Score = 33.7 bits (76), Expect = 0.064
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 197 QLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD- 254
LE+ + V SD R+ ++NG + S G L+ P G+AVD
Sbjct: 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-----LESPGGLAVDW 125
Query: 255 DQGYISVGDSGNNRIQIFTPDGQFLR 280
+ DSG +RI++ DG +
Sbjct: 126 VHDKLYWTDSGTSRIEVANLDGAHRK 151
Score = 28.7 bits (63), Expect = 2.9
Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 13/124 (10%)
Query: 197 QLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVD-D 255
+L + ++ +N ++ + T L+ +
Sbjct: 30 ELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLL------LNNLENAIALDFHHR 83
Query: 256 QGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAV-MSNGNILVCDRENH 314
+ + D +RI +G + G + G+AV + + D
Sbjct: 84 RELVFWSDVTLDRILRANLNGSNVEEVVSTG-----LESPGGLAVDWVHDKLYWTDSGTS 138
Query: 315 RIQV 318
RI+V
Sbjct: 139 RIEV 142
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 44.3 bits (105), Expect = 3e-05
Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 27/194 (13%)
Query: 102 GIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS 161
G AV +V + + +DG G K L P+ + V+ + +
Sbjct: 90 GNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKR--LNSPNDLIVARDGAIWFT 147
Query: 162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNK---AGQLEHPHYIAVSNTNRV-IVSDS 217
D + + V + G+ L+HP+ +A S + VS +
Sbjct: 148 DPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQT 207
Query: 218 NNHRVQIFDV-----------NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGN 266
++ + R S +G P G VD G++ S
Sbjct: 208 PEQGHGSVEITAFAWRDGALHDRRHFASVP-DG-------LPDGFCVDRGGWLWS--SSG 257
Query: 267 NRIQIFTPDGQFLR 280
+ +F DGQ L
Sbjct: 258 TGVCVFDSDGQLLG 271
Score = 33.5 bits (77), Expect = 0.077
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 209 TNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNR 268
++ SD RV + +G V + F G AVD Q + + G
Sbjct: 56 QRTLVWSDLVGRRVLGWREDGTVDVLLDATA-------FTNGNAVDAQQRLVHCEHGRRA 108
Query: 269 IQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCD 310
I DGQ G + + V +G I D
Sbjct: 109 ITRSDADGQAHLLVGRY--AGKRLNSPNDLIVARDGAIWFTD 148
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 41.8 bits (99), Expect = 2e-04
Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 34/173 (19%)
Query: 61 IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADSSNHR 120
V D+ + V + V + ++ P G+AV D I VA H
Sbjct: 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSS-------QPLGLAVSADGDIAVAACYKH- 433
Query: 121 VQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQS 180
+ ++ S G S + +A+SN + + + +V ++ ++G S
Sbjct: 434 IAIY-SHGKLTEVPIS--------YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA-SVS 483
Query: 181 DGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSNNHRVQIFDVNGR 230
+ + HP I A SN +V+ + +V + V
Sbjct: 484 EVKTIV-------------HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 523
Score = 34.9 bits (81), Expect = 0.033
Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 26/176 (14%)
Query: 57 WPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIVVADS 116
P G+AV D I VA H + + + +A+ D V
Sbjct: 413 QPLGLAVSADGDIAVAACYKH-IAI----YSHGKLTEVPISYNSSCVALSNDKQFVAVGG 467
Query: 117 SNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV-NG 175
+ +V V++ G V + ++ + A +A SN +V+ + +V + V N
Sbjct: 468 QDSKVHVYKLSGASVSEVKTIVHPAE----ITSVAFSNNGAFLVATDQSRKVIPYSVANN 523
Query: 176 RVFQSDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTNRVIVSDSNNHRVQIFDVN 228
++ H + + S N + + S ++ V ++++N
Sbjct: 524 FELAHTNSWTF-------------HTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Score = 31.8 bits (73), Expect = 0.33
Identities = 32/237 (13%), Positives = 69/237 (29%), Gaps = 56/237 (23%)
Query: 59 RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT-----WPRGIAVGPDNSIVV 113
++ D + + + + +D+ T F GI +
Sbjct: 328 TALSSSADGKTLFSADAEGHINS----WDISTGISNRVFPDVHATMITGIKTTSKGDLFT 383
Query: 114 ADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDV 173
S + ++V + G+ V ++ N P +AVS + V+ H + I+
Sbjct: 384 V-SWDDHLKVVPAGGSGVDSSKAVAN--KLSSQPLGLAVSADGDIAVAACYKH-IAIYS- 438
Query: 174 NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVIT 233
G S + +A+SN + + + +V ++ ++G ++
Sbjct: 439 -------HGKLTEVPIS--------YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS 483
Query: 234 SFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAFGCWGSGDG 290
+ VA F+ +G FL A
Sbjct: 484 EVKTIVHPAE----ITSVA-------------------FSNNGAFLVA----TDQSR 513
Score = 27.9 bits (63), Expect = 5.8
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 29/164 (17%)
Query: 150 IAVSNTNRVIVSDSNNHRVQIFDV-NGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI---A 205
+ + T + +VS S N + + G + Q G H I +
Sbjct: 288 LGIIWTKQALVSISANGFINFVNPELGSIDQ---VRYG-------------HNKAITALS 331
Query: 206 VSNTNRVIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDS 264
S + + S + +D+ G F + G+ +G +
Sbjct: 332 SSADGKTLFSADAEGHINSWDISTGISNRVFP-----DVHATMITGIKTTSKGDLFTVSW 386
Query: 265 GNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILV 308
++ + + + G+AV ++G+I V
Sbjct: 387 DDHLKVVPAGGSGVDSSKAVANKLSSQPL---GLAVSADGDIAV 427
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 41.2 bits (97), Expect = 3e-04
Identities = 45/281 (16%), Positives = 81/281 (28%), Gaps = 72/281 (25%)
Query: 58 PRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCVFLAFTWPRG-----IAVGPDNS- 110
+ + V PD + V RV + A I+
Sbjct: 40 VQPMVVSPDKRYLYVGVRPEFRVLAY--RIAPDDGALTFAAESALPGSLTHISTDHQGQF 97
Query: 111 IVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQ-LEHPHYIAVSNTNR-VIVSDSNNHR 167
+ V + V V + DG VG + L+ H +S NR + V R
Sbjct: 98 VFVGSYNAGNVSVTRLEDGLPVGV-----VDVVEGLDGCHSANISPDNRTLWVPALKQDR 152
Query: 168 VQIFDVNGR----------------------VFQSDGTFVGKFGSMGN---------KAG 196
+ +F V+ VF + + + + G
Sbjct: 153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212
Query: 197 QLEHPHY----------------IAVSNTNR-VIVSDSNNHRVQIFDVN--GRVITSFGS 237
+E I ++ R + D + +F V+ G V++ G
Sbjct: 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272
Query: 238 EGSEEGQLKFPRGVAVD-DQGYISVGDSGNNRIQIFTPDGQ 277
+ +E PRG VD Y+ ++ I ++ G+
Sbjct: 273 QPTE----TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 37.8 bits (87), Expect = 0.003
Identities = 26/229 (11%), Positives = 61/229 (26%), Gaps = 23/229 (10%)
Query: 61 IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSIV-VADSSNH 119
+A + +VV D+ V K + A P V P I + +
Sbjct: 5 LAPARPDKLVVIDTEKMAV--------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSE 56
Query: 120 RVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG---- 175
+ + +++ A+S + + + R+++
Sbjct: 57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 176 -RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVN-GRVIT 233
++ ++ K +A + + + + D G ++
Sbjct: 117 VALYDAETLSRRKAFEAPR------QITMLAWARDGSKLY--GLGRDLHVMDPEAGTLVE 168
Query: 234 SFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFLRAF 282
+ E P +AV +Q S + D A+
Sbjct: 169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217
Score = 36.3 bits (83), Expect = 0.009
Identities = 31/265 (11%), Positives = 62/265 (23%), Gaps = 46/265 (17%)
Query: 52 PGCFTWPRGIAVGPDNSIV-VADSSNHRVQVCFPHFDLKTNCVFLAFT---------WPR 101
P V P I + + + DL T
Sbjct: 30 ADAGPTPMVPMVAPGGRIAYATVNKSESLVK----IDLVTGETLGRIDLSTPEERVKSLF 85
Query: 102 GIAVGPDNSI--VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQL----EHPHYIAVSNT 155
G A+ PD + + F+ T V + + + +A +
Sbjct: 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARD 145
Query: 156 NRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS 215
+ + + D GT V +A P +AV N +
Sbjct: 146 GSKLY--GLGRDLHVMDPE------AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197
Query: 216 DSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD 275
+ D++ T+ + G+ D ++G ++
Sbjct: 198 MATPFYTARKDIDPADPTA------------YRTGLLTMD------LETGEMAMREVRIM 239
Query: 276 GQFLRAFGCWGSGDGEFKGLEGVAV 300
F + + F +
Sbjct: 240 DVFYFSTAVNPAKTRAFGAYNVLES 264
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 37.4 bits (87), Expect = 0.006
Identities = 21/205 (10%), Positives = 52/205 (25%), Gaps = 31/205 (15%)
Query: 53 GCFTWPRGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFTW-PRG--IAVGPDN 109
+P+ +A P+ V V + K F W P A+ +
Sbjct: 354 SVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDET 413
Query: 110 SIVVADSSNHRVQVFQSDGTFVGKF---GSM----------------GNKAGQLE-HPHY 149
+ + V + G++ G +++ +
Sbjct: 414 GQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKD 473
Query: 150 IAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNT 209
+ S+ +++ + N +F D + + V
Sbjct: 474 VIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSE--------GVDEA 525
Query: 210 NRVIVSDSNNHRVQIFDVNGRVITS 234
V+ S + + + + T+
Sbjct: 526 FDVLYELSESITSGKWVGDVFIFTT 550
Score = 32.0 bits (73), Expect = 0.27
Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 39/182 (21%)
Query: 59 RGIAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFLAFT----WPRGIAVGPDNSIVVA 114
+GI P V+ + RV++ ++ +T + R + ++
Sbjct: 17 KGIDFHPTEPWVLTTLYSGRVEI----WNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 115 DSSNHRVQVFQSDGTFVGKFGSMGNKAGQLE-HPHYI---AVSNTNRVIVSDSNNHRVQI 170
S + R++VF + G K E HP YI AV T ++S S++ V++
Sbjct: 73 GSDDFRIRVFNYN---------TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 171 FDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI---AVSNTN-RVIVSDSNNHRVQIFD 226
++ + + TF G H H++ A + + S + V+++
Sbjct: 124 WNWENN-WALEQTFEG-------------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Query: 227 VN 228
+
Sbjct: 170 LG 171
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia
sympodialis}
Length = 334
Score = 36.4 bits (83), Expect = 0.010
Identities = 25/195 (12%), Positives = 51/195 (26%), Gaps = 33/195 (16%)
Query: 153 SNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRV 212
S+ R+++++ + + + S G+ Q+ + N+ R+
Sbjct: 22 RTRQVFYQSNLYKGRIEVYNPKTQSHFN--VVIDGASSNGDGEQQMSGLSLLTHDNSKRL 79
Query: 213 IVSDSNNHRVQIFDVNGRVIT---------------------------SFGSEGSEEGQL 245
N F+ + E +
Sbjct: 80 FAVMKNAKS---FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP 136
Query: 246 KFPRGVAVDDQGYISVGDS-GNNRIQIFTPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNG 304
A D G V + G I + DG+ + F G+ G G+ +
Sbjct: 137 FGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHS 196
Query: 305 NILVCDRENHRIQVF 319
N L+ + F
Sbjct: 197 NKLIAFGGPRALTAF 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 34.6 bits (80), Expect = 0.033
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 31/126 (24%)
Query: 181 DGTFVGKFGSMGNK----AGQL---------EHPHYIAVSNT-------NRVIVSDSNNH 220
G G+MG K AG + + I++ N+ D+ +
Sbjct: 144 SGALW--IGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201
Query: 221 RVQIFDVN---GRVI---TSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTP 274
R+ ++ G F +G G D +G+I G + +
Sbjct: 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKG---GMDGSVCDAEGHIWNARWGEGAVDRYDT 258
Query: 275 DGQFLR 280
DG +
Sbjct: 259 DGNHIA 264
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 34.0 bits (77), Expect = 0.052
Identities = 31/249 (12%), Positives = 68/249 (27%), Gaps = 45/249 (18%)
Query: 39 RRLQFKIGSRGSEPGCFTWPRGIAVGPDNS------IVVADSSNHRVQVCFPHFDLKT-- 90
+ +I + F P GI+ D+ +V S+ V+V + K+
Sbjct: 96 AVSELEIIGNTLDISSF-NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLL 154
Query: 91 ---NCVFLAFTWPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVG---------KFGSMG 138
I + +S +G +
Sbjct: 155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR 214
Query: 139 NKAGQLEHPHYIAVS-NTNRVIVSDSNNHRVQIFDVNG-------------------RVF 178
A + + I +S + V +++ H++ +++ + V
Sbjct: 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVD 274
Query: 179 QSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRV-QIFDVNGRVITSFGS 237
G G + S R+ S +V ++ NG V+ +
Sbjct: 275 PVTGDLWVGCHPNGMRI-FFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVL-QGST 332
Query: 238 EGSE-EGQL 245
+ +G+L
Sbjct: 333 VAAVYKGKL 341
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.052
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 37/96 (38%)
Query: 40 RLQFKIGSRGSEPGCFTWPRGIAVGPDNSIVVADSSNH---------------RVQVCFP 84
+ F IG R E +P ++ P ++ DS + + QV
Sbjct: 301 TVLFFIGVRCYE----AYPN-TSLPPS---ILEDSLENNEGVPSPMLSISNLTQEQV-QD 351
Query: 85 HFDLKTNCVFLAFTWPRG----IAV--GPDNSIVVA 114
+ + KTN P G I++ G N +VV+
Sbjct: 352 YVN-KTNSHL-----PAGKQVEISLVNGAKN-LVVS 380
Score = 31.6 bits (71), Expect = 0.39
Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 68/182 (37%)
Query: 16 LQTLLVS--GIG--QVGTTPRSQYLQKRRLQFKIGSRGSEPG-CFTWPRGIAVGPDNSIV 70
L ++ +S IG Q+ + Y+ +L G PG ++ +G A G +V
Sbjct: 231 LLSIPISCPLIGVIQL-----AHYVVTAKLL------GFTPGELRSYLKG-ATGHSQGLV 278
Query: 71 VA------DSSNH-----------------RVQVCFPHFDLKTNCVFLAFTWPRGIAVGP 107
A DS R +P+ L P +
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL----------PPSILEDSL 328
Query: 108 DNS-------IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR-VI 159
+N+ + +++ + +VQ +V K N I++ N + ++
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQ------DYVNKT----NSHLPAGKQVEISLVNGAKNLV 378
Query: 160 VS 161
VS
Sbjct: 379 VS 380
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 32.8 bits (74), Expect = 0.14
Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 33/127 (25%)
Query: 58 PRGIAVGPDN------------SIVVA--DSSNHRVQVCFPHFDLKTNCVFLAFTWPRGI 103
PR IA+ P I + D S R+ L WP G+
Sbjct: 204 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA---DTHLF---------WPNGL 251
Query: 104 AVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
+ + D+ +H ++ DG+ S L HP I V + + +D
Sbjct: 252 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-----QGLPHPFAITVFE-DSLYWTD 305
Query: 163 SNNHRVQ 169
+ +
Sbjct: 306 WHTKSIN 312
Score = 27.8 bits (61), Expect = 5.0
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 199 EHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEGSE-----EGQLKFPRGVAV 253
E+ + + V DV I GS L+ P G+AV
Sbjct: 107 EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 166
Query: 254 D-DQGYISVGDSGNNRIQIFTPDGQFLR 280
D + DSG +RI++ DG +
Sbjct: 167 DWVHDKLYWTDSGTSRIEVANLDGAHRK 194
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed
beta-propeller, structural genomics, joint center F
structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides
fragilis} PDB: 3fgb_A
Length = 361
Score = 32.1 bits (73), Expect = 0.23
Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 28/236 (11%)
Query: 105 VGPDNS-IVVADSSNHRVQVFQ--SDGTFVGKF------GSMGNKAGQLE-HPHYIAVSN 154
+ + IV A+ S + VF DG + GS +K Q H H + ++
Sbjct: 105 LTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164
Query: 155 TNR-VIVSDSNNHRVQIFDVN---GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTN 210
+ ++ D ++ F++N + G + G P ++ ++
Sbjct: 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS--GPRHLIFNSDG 222
Query: 211 RVI-VSDSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQG---YISVGDSGN 266
+ + + V F ++ + ++ + + + G Y S
Sbjct: 223 KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-RLKA 281
Query: 267 NRIQIFT--PDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGN-ILVCDRENHRIQVF 319
+ + IF L G +G + NG +LV R+ + IQ+F
Sbjct: 282 DGVAIFKVDETNGTLTKVGYQLTGI----HPRNFIITPNGKYLLVACRDTNVIQIF 333
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 31.7 bits (71), Expect = 0.27
Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 38/180 (21%)
Query: 58 PRGIAVGPDN------------SIVVA--DSSNHRVQVCFPHFDLKTNCVFLAFTWPRGI 103
PR I V P + I + + V +++ WP GI
Sbjct: 204 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---TENIQ---------WPNGI 251
Query: 104 AVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
+ + + DS H + +G +L HP +AV ++V +D
Sbjct: 252 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK---RLAHPFSLAVFE-DKVFWTD 307
Query: 163 SNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSN-TNRVIVSDSNNHR 221
N + + G+ V + H + N + +N
Sbjct: 308 IINEAIF------SANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGG 361
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 31.2 bits (70), Expect = 0.47
Identities = 24/183 (13%), Positives = 62/183 (33%), Gaps = 28/183 (15%)
Query: 61 IAVGPDNSIVVADSSNHRVQVCFPHFDLKT-NCVFLAFTWP--------RGIAVGPDNSI 111
+ D S+V A + + F ++ N A W +
Sbjct: 10 LLTSRDGSLVFA-IIKNCILS----FKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQG 64
Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHY-----IAVS-NTNRVIVSDSNN 165
+++ N ++ + G + + + G P Y + ++ + +R+I ++
Sbjct: 65 QSSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD 124
Query: 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIF 225
+ +FDV+ + + K + P+ I+++ + ++ V
Sbjct: 125 KSLLVFDVDKT--SKNVLKLRKRFCFSKR------PNAISIAEDDTTVIIADKFGDVYSI 176
Query: 226 DVN 228
D+N
Sbjct: 177 DIN 179
Score = 28.9 bits (64), Expect = 2.2
Identities = 19/184 (10%), Positives = 51/184 (27%), Gaps = 36/184 (19%)
Query: 103 IAVGPDNSIVVADSSNHRVQVFQ-SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVS 161
+ D S+V A + + F+ G + +++
Sbjct: 10 LLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSE 68
Query: 162 DSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHY-----IAVS-NTNRVIVS 215
+ N ++ ++ + G + + + G P Y + ++ + +R+I
Sbjct: 69 NENENK--------KLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIAC 120
Query: 216 DSNNHRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD 275
++ + +FDV+ K P ++ D
Sbjct: 121 ADSDKSLLVFDVDKTSKNVL-KLRKRFCFSKRPNAIS-------------------IAED 160
Query: 276 GQFL 279
+
Sbjct: 161 DTTV 164
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 31.1 bits (71), Expect = 0.53
Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 28/141 (19%)
Query: 99 WPRGIAVGPDNSIVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYI---AVSNT 155
P+ + D V + + + + G + +L P + +
Sbjct: 408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV--------RLNSPGSAVSLSQNYV 459
Query: 156 NRVIVSDSNNHRVQIFDVN-GRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIV 214
+ + ++ D+ ++ P YI++S + I
Sbjct: 460 AVGLEEGNTIQVFKLSDLEVSFDLKT---------------PLRAKPSYISISPSETYIA 504
Query: 215 SDSNNHRVQIFDV-NGRVITS 234
+ ++ ++D+ + V TS
Sbjct: 505 AGDVMGKILLYDLQSREVKTS 525
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 30.4 bits (68), Expect = 0.66
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 2/97 (2%)
Query: 54 CFTWPRGIAVGPD-NSIVVADSSNHRV-QVCFPHFDLKTNCVFLAFTWPRGIAVGPDNSI 111
P G V D + ++VA+ +H++ + T V + P I D
Sbjct: 183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGHF 242
Query: 112 VVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPH 148
V+ S + KF GN + P
Sbjct: 243 WVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP 279
Score = 28.5 bits (63), Expect = 2.9
Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 242 EGQLKFPRGVAVDDQG---YISVGD-------SGNNRIQIFTPDGQFLRAFGCWGSGDGE 291
E P D Y SV D N+ F + C S D E
Sbjct: 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAE 74
Query: 292 FKGLEG-----VAVMSNGNILVCDRENHRIQV 318
+ L G + N + + D H V
Sbjct: 75 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVV 106
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 30.4 bits (69), Expect = 0.67
Identities = 30/251 (11%), Positives = 68/251 (27%), Gaps = 63/251 (25%)
Query: 61 IAVGPDNSIVVADSSNHRVQVCFPHFDLKTNCVFL-----------AFTWPRGIAVGPDN 109
A + + + ++L+ + + A G+ +G
Sbjct: 74 GATSLQQRYLATGDFGGNLHI----WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA 129
Query: 110 SIVVADSSNHRVQV--FQSDGTFVGKFGSM--GNKAGQLEHPHYIAVSNTNRVIVSDSNN 165
+V S + V+V + V + NK A + RV+ + +N
Sbjct: 130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN 189
Query: 166 HRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI-AV-----SNTNRVIVSDSNN 219
+++FD+ + + + ++ + +V+ S
Sbjct: 190 GDIKLFDLRN----------------MALRWETNIKNGVCSLEFDRKDISMNKLVATSLE 233
Query: 220 HRVQIFDVNGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPDGQFL 279
+ +FD+ + T + SE+ V P + L
Sbjct: 234 GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVR-------------------HLPQNREL 274
Query: 280 RAFGCWGSGDG 290
G G
Sbjct: 275 FLT---AGGAG 282
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 30.4 bits (69), Expect = 0.73
Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 17/90 (18%)
Query: 150 IAVSNTN-RVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYI---A 205
+ + N + S + D +G V Q ++
Sbjct: 124 MKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS-------------WDYWYCCVD 170
Query: 206 VSNTNRVIVSDSNNHRVQIFDVNGRVITSF 235
VS + +++ + + R+ + ++G I
Sbjct: 171 VSVSRQMLATGDSTGRLLLLGLDGHEIFKE 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.73
Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 46/154 (29%)
Query: 137 MGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNG------RVFQSDGTFVGKFGS 190
M + G+ ++ + I+S + V FD + +
Sbjct: 7 MDFETGEHQY--------QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE--------- 49
Query: 191 MGNKAGQLEH----PHYIAVSNTNRV--IVSDSNNHRVQIFDVNGRVITSFG---SEGSE 241
+++H AVS T R+ + VQ F V + ++ S
Sbjct: 50 ------EIDHIIMSKD--AVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKT 100
Query: 242 EGQLKFPRGVAVDDQGYISVGDSGNNRIQIFTPD 275
E R ++ + YI D N Q+F
Sbjct: 101 E-----QRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Score = 28.3 bits (62), Expect = 4.5
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 24/80 (30%)
Query: 2 CIPSEAKNINSCFLLQTLLVSGIGQ-----VGTTPRSQYLQKRRLQFKIGSRGS----EP 52
+P E N +S I + + T +++ +L I S S EP
Sbjct: 317 DLPREVLTTNP------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEP 368
Query: 53 G----CFTWPRGIAVGPDNS 68
F ++V P ++
Sbjct: 369 AEYRKMF---DRLSVFPPSA 385
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural
genomics, midwest CEN structural genomics (MCSG),
PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis}
PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Length = 217
Score = 29.6 bits (66), Expect = 1.1
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 15/125 (12%)
Query: 123 VFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD---SNNHRVQIFDVNGRVFQ 179
+ G + K + +I T + ++SD S IF + V
Sbjct: 75 FLNAKGDVTASTTELKTKVNLADRSFFIKAKETKKTVISDSYSSRITGQPIFTICVPVLD 134
Query: 180 SDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVITSFGSEG 239
S + I + +I S + +++ + +G++I + G
Sbjct: 135 SKRNVTDYLVAA------------IQIDYLKNLINLLSPDVYIEVVNQDGKMIFASGQAS 182
Query: 240 SEEGQ 244
E Q
Sbjct: 183 HAEDQ 187
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 29.4 bits (66), Expect = 1.5
Identities = 25/206 (12%), Positives = 58/206 (28%), Gaps = 32/206 (15%)
Query: 101 RGIAVGPDNSIVVADSSNHRVQVFQSDGTF----VGKFGSMGNKAGQLEHPHY-----IA 151
AV P + + S+ G + + + L + I
Sbjct: 67 TSSAVSPGETPYLITGSD--------QGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQIT 118
Query: 152 VSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPHYIAV----- 206
+ S + ++ + VN Q + + + AV
Sbjct: 119 MIPNFDAFAVSSKDGQIIVLKVN-HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAF 177
Query: 207 -SNTNRVIVSDSNNHRVQIFDVN-GRVITSFGSEGSEEGQLKFPRGVAVD-DQGYISVGD 263
+ ++V+ +N RV IFD+ + + + +D + + +G
Sbjct: 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA----VSSICIDEECCVLILG- 232
Query: 264 SGNNRIQIF-TPDGQFLRAFGCWGSG 288
+ I I+ +R++
Sbjct: 233 TTRGIIDIWDIRFNVLIRSWSFGDHA 258
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 29.0 bits (64), Expect = 2.0
Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 29/237 (12%)
Query: 57 WPRGIAVGPDNSIVVADSSNHRV--------QVCFPHFDLKTNCVFLAFTWPRGIAVGP- 107
I++ D ++ + + R+ F D+K + P
Sbjct: 179 HINSISINSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPN 237
Query: 108 DNSIVVADSSNHRVQVF---------QSDGTFVGKFGSMGNKA--GQLEHPHYIAVSNTN 156
+ V SS +++ + F + + S++
Sbjct: 238 SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG 297
Query: 157 RVIVSDSNNHRVQIFDVNG-----RVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNR 211
R +++ V+++D+N +Q K S+ + + ++
Sbjct: 298 RYMMTRDYLS-VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC-IFDKFECCWNGSDS 355
Query: 212 VIVSDSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVDDQGYISVGDSGNN 267
V+++ S N+ ++FD R IT S + + + S ++
Sbjct: 356 VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412
Score = 27.4 bits (60), Expect = 7.4
Identities = 9/116 (7%), Positives = 39/116 (33%), Gaps = 13/116 (11%)
Query: 134 FGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGN 193
G++ + + + + +++ ++ + RV IF +
Sbjct: 18 KGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF 77
Query: 194 KAGQLEHPHYIAVSNTNRV-------------IVSDSNNHRVQIFDVNGRVITSFG 236
++ + E + ++ ++ + +N+ ++++ ++ R G
Sbjct: 78 QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEG 133
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transme
antibiotic resistance, cell shape, peptidoglycan; 2.18A
{Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Length = 680
Score = 29.0 bits (65), Expect = 2.5
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVI 232
L Y + +++ R +I+D +G+ +
Sbjct: 37 LNKDFYEKKLASASQTKVTTSSARGEIYDASGKPL 71
Score = 27.9 bits (62), Expect = 5.2
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 144 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRV 177
L Y + +++ R +I+D +G+
Sbjct: 37 LNKDFYEKKLASASQTKVTTSSARGEIYDASGKP 70
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 28.1 bits (63), Expect = 4.7
Identities = 27/184 (14%), Positives = 53/184 (28%), Gaps = 34/184 (18%)
Query: 146 HPHYI---AVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKFGSMGNKAGQLEHPH 202
HP I S +I + + RV++ + R G +
Sbjct: 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEP--RKGTVVAEKDR--PHEGTRPVH----- 225
Query: 203 YIAVSNTNRVIVS---DSNNHRVQIFDV-NGRVITSFGSEGSEEGQLKFPRGVAVD-DQG 257
+ +++ + + +V ++D + S + G D D
Sbjct: 226 -AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG----VLLPFFDPDTN 280
Query: 258 YISVGDSGNNRIQIF-----TPDGQFLRAFGCWGSGDGEFKGLEGVAVMSNGNILVCDRE 312
+ + G++ I+ F P +L F S G+ M + V E
Sbjct: 281 IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES-------QRGMGYMPKRGLEVNKCE 333
Query: 313 NHRI 316
R
Sbjct: 334 IARF 337
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 27.8 bits (61), Expect = 5.0
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 31/127 (24%)
Query: 58 PRGIAVGPDNS------------IVVA--DSSNHRVQVCFPHFDLKTNCVFLAFTWPRGI 103
PR I V P + I + + V +++ WP GI
Sbjct: 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---TENIQ---------WPNGI 545
Query: 104 AVGPDNS-IVVADSSNHRVQVFQSDGTFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSD 162
+ + + DS H + +G +L HP +AV ++V +D
Sbjct: 546 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK---RLAHPFSLAVFE-DKVFWTD 601
Query: 163 SNNHRVQ 169
N +
Sbjct: 602 IINEAIF 608
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 111
Score = 26.4 bits (58), Expect = 7.0
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 236 GSEGSEEGQLKFPRGVAVDDQGYISVGDS-GNNRIQIFTPDGQ 277
GS GS G+ P + Q + V + GNN ++ T GQ
Sbjct: 1 GSSGSS-GEHIVPS----NQQQIVRVLRTPGNNLHEVETAQGQ 38
>3ezj_A General secretion pathway protein GSPD; general secretory pathway,
secretin, single chain antibody, transport, immune
system, complex; 2.80A {Escherichia coli}
Length = 241
Score = 27.0 bits (59), Expect = 7.2
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 18/93 (19%)
Query: 150 IAVSNTNRVIVSDSNNHRVQIFDVNGRVFQSDGTFVGKF------------------GSM 191
+ +N ++++ + ++ +V RV + +
Sbjct: 139 VNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNS 198
Query: 192 GNKAGQLEHPHYIAVSNTNRVIVSDSNNHRVQI 224
G +A TN VIVS R ++
Sbjct: 199 GENQPATLKSQIVADERTNSVIVSGDPATRDKM 231
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity;
beta-lactam, D- transpeptidase, D-carboxypeptidase,
biosynthetic protein; 1.80A {Staphylococcus aureus}
SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwu_A* 1mwr_A
1mws_A* 1mwt_A*
Length = 646
Score = 27.3 bits (61), Expect = 8.2
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 198 LEHPHYIAVSNTNRVIVSDSNNHRVQIFDVNGRVI 232
+ + + + + R +I D N +
Sbjct: 106 DHSVIIPGMQKDQSIHIENLKSERGKILDRNNVEL 140
>3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU
NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A*
3u75_A* 3u14_A*
Length = 509
Score = 27.1 bits (60), Expect = 8.3
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 111 IVVADSSNHRVQVFQSDG----TFVGKFGSMGNKAGQLEHPHYIAVSNTNRVIVSDSNNH 166
+VV+ S +++Q+F S F S G Q E P I V N +
Sbjct: 167 MVVSKSQEYKIQIFGSANLKNWVLNSNFSS-GYYGNQYECPGLIEVPIEN-----SDKSK 220
Query: 167 RVQIFDVNGRVFQ---SDGTFVGKF 188
V +N + FVG F
Sbjct: 221 WVMFLAINPGSPLGGSINQYFVGDF 245
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 27.2 bits (60), Expect = 8.7
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 2 CIPSEAKNINSCFLLQTLLVSGIGQVGTTPRSQYLQK 38
C+P + + T V+G G S L +
Sbjct: 243 CLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQ 279
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis,
antibiotics design, transferase, hydrolase; HET: M0E;
2.16A {Escherichia coli} PDB: 3fwl_A* 3vma_A*
Length = 751
Score = 27.3 bits (61), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 213 IVSDSNNHRVQIFDVNGRVITSFGSEGSEE 242
IV+ NN + F ++ R+IT S E+
Sbjct: 130 IVNMENNRQFGFFRLDPRLITMISSPNGEQ 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,884,241
Number of extensions: 294143
Number of successful extensions: 1321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 201
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)