Query psy140
Match_columns 184
No_of_seqs 153 out of 1285
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 16:57:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0463|consensus 100.0 3.2E-31 7E-36 240.4 14.2 154 1-159 450-605 (641)
2 PF03143 GTP_EFTU_D3: Elongati 99.9 3.5E-24 7.6E-29 159.8 11.4 89 9-98 1-99 (99)
3 cd03708 GTPBP_III Domain III o 99.9 4.2E-22 9E-27 143.7 12.0 86 12-97 2-87 (87)
4 cd03706 mtEFTU_III Domain III 99.9 2.5E-21 5.3E-26 142.1 12.4 85 12-97 2-93 (93)
5 cd03704 eRF3c_III This family 99.9 7.1E-21 1.5E-25 142.9 12.2 85 12-97 2-108 (108)
6 cd03707 EFTU_III Domain III of 99.8 2.5E-20 5.5E-25 135.6 11.5 81 13-94 3-90 (90)
7 cd01513 Translation_factor_III 99.8 2.1E-19 4.5E-24 131.8 10.7 82 12-94 2-102 (102)
8 PRK12317 elongation factor 1-a 99.8 4.5E-19 9.8E-24 160.2 14.2 99 1-100 304-423 (425)
9 cd04094 selB_III This family r 99.8 6.8E-19 1.5E-23 130.3 12.3 92 1-94 2-97 (97)
10 PLN03127 Elongation factor Tu; 99.8 4.4E-19 9.6E-24 163.0 13.9 96 1-98 344-446 (447)
11 TIGR00483 EF-1_alpha translati 99.8 5.4E-19 1.2E-23 160.0 14.2 98 1-99 306-424 (426)
12 PRK12735 elongation factor Tu; 99.8 5.5E-19 1.2E-23 159.2 13.9 96 1-98 293-395 (396)
13 cd04093 HBS1_C HBS1_C: this fa 99.8 8.3E-19 1.8E-23 130.9 12.5 85 12-97 2-107 (107)
14 PRK00049 elongation factor Tu; 99.8 6.3E-19 1.4E-23 159.0 14.0 96 1-98 293-395 (396)
15 KOG0459|consensus 99.8 2.7E-19 5.8E-24 163.2 10.6 98 1-99 384-501 (501)
16 PLN00043 elongation factor 1-a 99.8 1E-18 2.3E-23 160.5 14.1 100 1-101 312-433 (447)
17 PRK12736 elongation factor Tu; 99.8 1.2E-18 2.7E-23 156.9 14.2 96 1-98 291-393 (394)
18 COG5258 GTPBP1 GTPase [General 99.8 1.5E-19 3.3E-24 164.4 8.3 96 1-97 431-526 (527)
19 cd03705 EF1_alpha_III Domain I 99.8 1E-18 2.2E-23 129.8 10.9 82 12-94 2-104 (104)
20 TIGR00485 EF-Tu translation el 99.8 1.6E-18 3.4E-23 155.9 13.9 96 1-98 291-393 (394)
21 KOG0460|consensus 99.8 6.5E-19 1.4E-23 158.4 8.6 99 1-101 335-440 (449)
22 CHL00071 tufA elongation facto 99.8 5.2E-18 1.1E-22 153.5 14.0 97 1-99 301-409 (409)
23 PLN03126 Elongation factor Tu; 99.8 5.2E-18 1.1E-22 157.3 14.1 96 1-98 370-477 (478)
24 PTZ00141 elongation factor 1- 99.7 1.7E-17 3.8E-22 152.3 14.2 101 1-102 312-434 (446)
25 COG5256 TEF1 Translation elong 99.7 1.8E-17 3.8E-22 151.2 9.9 97 1-98 310-427 (428)
26 KOG1143|consensus 99.7 9.4E-17 2E-21 146.3 8.6 102 1-102 485-587 (591)
27 PRK05124 cysN sulfate adenylyl 99.7 5E-16 1.1E-20 143.7 13.2 100 1-102 322-442 (474)
28 COG0050 TufB GTPases - transla 99.7 5.1E-16 1.1E-20 137.9 11.0 96 1-98 291-393 (394)
29 PRK05506 bifunctional sulfate 99.6 4.6E-15 1E-19 140.9 13.5 98 1-100 318-436 (632)
30 cd04095 CysN_NoDQ_III TCysN_No 99.6 6.1E-15 1.3E-19 109.8 10.3 81 12-94 2-103 (103)
31 TIGR02034 CysN sulfate adenyly 99.6 4.6E-15 1E-19 134.4 11.6 92 1-94 294-406 (406)
32 PRK04000 translation initiatio 99.4 9.5E-13 2.1E-17 119.7 12.0 86 1-95 312-411 (411)
33 PTZ00327 eukaryotic translatio 99.4 1.3E-12 2.9E-17 121.0 12.5 88 1-96 345-451 (460)
34 TIGR03680 eif2g_arch translati 99.3 1.8E-11 4E-16 110.9 12.1 85 1-94 307-405 (406)
35 PRK10512 selenocysteinyl-tRNA- 99.2 2.1E-10 4.6E-15 109.6 11.1 88 1-101 254-344 (614)
36 KOG0458|consensus 99.1 8.4E-11 1.8E-15 111.3 7.6 96 2-98 485-602 (603)
37 KOG0052|consensus 99.1 6.9E-11 1.5E-15 107.6 4.4 101 3-104 256-378 (391)
38 TIGR00475 selB selenocysteine- 98.8 4.6E-08 1E-12 93.0 10.9 63 26-97 274-338 (581)
39 COG2895 CysN GTPases - Sulfate 98.0 4.5E-05 9.9E-10 69.9 9.7 101 1-103 300-421 (431)
40 PF09173 eIF2_C: Initiation fa 97.1 0.0072 1.6E-07 45.0 9.9 72 14-94 2-88 (88)
41 COG3276 SelB Selenocysteine-sp 96.7 0.0086 1.9E-07 56.0 9.0 90 1-101 250-343 (447)
42 COG5257 GCD11 Translation init 96.2 0.055 1.2E-06 49.7 10.6 86 2-96 314-413 (415)
43 KOG0463|consensus 61.2 35 0.00077 32.6 7.2 28 143-171 574-602 (641)
44 PF03459 TOBE: TOBE domain; I 51.1 49 0.0011 21.6 4.9 55 12-69 3-60 (64)
45 PF07610 DUF1573: Protein of u 49.8 36 0.00077 21.6 3.9 25 44-68 21-45 (45)
46 KOG0466|consensus 44.7 21 0.00046 33.1 2.9 85 3-96 355-458 (466)
47 cd01998 tRNA_Me_trans tRNA met 28.8 1.4E+02 0.0029 26.9 5.5 49 37-94 299-349 (349)
48 PRK14664 tRNA-specific 2-thiou 27.9 3.8E+02 0.0082 24.6 8.3 50 37-95 295-346 (362)
49 PF03054 tRNA_Me_trans: tRNA m 27.0 4.2E+02 0.0092 24.2 8.4 43 43-94 312-356 (356)
50 TIGR00420 trmU tRNA (5-methyla 23.2 1.9E+02 0.0041 26.2 5.4 30 64-94 321-352 (352)
51 PRK14665 mnmA tRNA-specific 2- 20.5 2.6E+02 0.0056 25.5 5.7 31 64-95 327-359 (360)
No 1
>KOG0463|consensus
Probab=99.97 E-value=3.2e-31 Score=240.37 Aligned_cols=154 Identities=57% Similarity=0.879 Sum_probs=147.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccceEEeeeCCe
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQR 80 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~le~g~R 80 (184)
||+++|+..+.++|+|+|+|++|+||+.|++.|+.++||++++++++|..++.+||+.||.+.|+|+|.++|+|++.|+|
T Consensus 450 MVmVsp~lkPqAsweFEaEILVLHHPTTIsprYQAMvHcGSiRQTAtivsM~kdcLRTGDka~V~FrFIkqPEYir~gqr 529 (641)
T KOG0463|consen 450 MVMVSPKLKPQASWEFEAEILVLHHPTTISPRYQAMVHCGSIRQTATIVSMGKDCLRTGDKAKVQFRFIKQPEYIRPGQR 529 (641)
T ss_pred eEEecCCCCcceeeEEeeeEEEEecCCccCcchhheeeeccccceeeeeecChhhhhcCCcceEEEEEecCcceecCCce
Confidence 89999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCceEEEEEEEeccCCCCCCCCccccccccch--hhcccCCCCCccccCCCCCCCCCccCCCCCCcccccccccCC
Q psy140 81 MVFREGRTKAVGNVTKVLPPSGHQGNYSHLSRTKAN--KMLSHRAQPNKTWALSPVTEKPEVKTPRDLDRAGQAGAKRGG 158 (184)
Q Consensus 81 FvLRdgrTIAvGvIt~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
++||+|+|.|+|.|+++++.+..++ +|+|+. +|+++++.++..|+.++++++|+|++|+++|+++++|+..-.
T Consensus 530 lVFREGRTKAVGti~~~lp~~~~sp-----~r~Kp~~~~~~s~~kgs~g~r~~gg~s~g~~~~a~~~gde~~s~~~gq~~ 604 (641)
T KOG0463|consen 530 LVFREGRTKAVGTISSVLPQESLSP-----QRAKPKDGRQKSYGKGSMGPRDKGGPSGGPAVGAPPPGDEASSVGAGQAS 604 (641)
T ss_pred EEeecccceeeeeecccccccccCc-----cCCCchhhhhhhcCCCCCCcccCCCCCCCCccCCCCCCcccccccccccC
Confidence 9999999999999999999999999 999998 677888999999999999999999999999999999886544
Q ss_pred C
Q psy140 159 V 159 (184)
Q Consensus 159 ~ 159 (184)
+
T Consensus 605 ~ 605 (641)
T KOG0463|consen 605 P 605 (641)
T ss_pred C
Confidence 4
No 2
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.91 E-value=3.5e-24 Score=159.77 Aligned_cols=89 Identities=36% Similarity=0.607 Sum_probs=81.4
Q ss_pred CCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec-----c----ceeecCCCeEEEEEEeccceEEeeeCC
Q psy140 9 NPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM-----S----AECLRTGDKAAVHFRFIKHPEYLRAGQ 79 (184)
Q Consensus 9 p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L-----D----p~~L~pGd~A~V~~~f~~~Pv~le~g~ 79 (184)
|++.+++|+|+|++|+++++|+.||+++||+|+++++|+|..+ + |++|++||.|.|+|+|+ +|+|++.++
T Consensus 1 ~~k~~~~f~A~v~vl~~~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~~~~~~p~~l~~g~~a~v~l~~~-~pi~ve~~~ 79 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDHPKPISPGYQPVLHIHTADVPCRIVKIISKIDTGKKKPKFLKPGDRAVVELEFQ-KPICVEPFS 79 (99)
T ss_dssp SSEEEEEEEEEEEESSGSS-BETTEEEEEEETTEEEEEEEEEEEEEESTTTEE-SEB-TTEEEEEEEEEE-EEEEETTTT
T ss_pred CCcccCEEEEEEEEEcCCccccCCCccceEEeeceeeEEEEeeeeccccccccccccccccccccceeec-cceeeecCc
Confidence 4789999999999999999999999999999999999999988 2 38999999999999999 899999999
Q ss_pred eEEEEC-CceEEEEEEEecc
Q psy140 80 RMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 80 RFvLRd-grTIAvGvIt~V~ 98 (184)
||+||| |+|||+|+|+++.
T Consensus 80 Rf~lR~~~~Tia~G~V~~vi 99 (99)
T PF03143_consen 80 RFILRDGGKTIAVGVVTKVI 99 (99)
T ss_dssp EEEEEETTEEEEEEEEEEE-
T ss_pred eEEEccCCeEEEEEEEEEeC
Confidence 999999 7899999999973
No 3
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.88 E-value=4.2e-22 Score=143.73 Aligned_cols=86 Identities=73% Similarity=1.157 Sum_probs=81.4
Q ss_pred eeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccceEEeeeCCeEEEECCceEEE
Q psy140 12 AVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQRMVFREGRTKAV 91 (184)
Q Consensus 12 at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~le~g~RFvLRdgrTIAv 91 (184)
.+++|+|+|++|+++++|++||++++|+||+++.|+|..++.+++++||.+.|+|+|..+|+|++.+.||+||+|+|||+
T Consensus 2 ~~~~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~l~~g~~~~v~i~f~~~p~~~e~~grf~lr~g~tva~ 81 (87)
T cd03708 2 ACWEFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSIDKDVLRTGDRALVRFRFLYHPEYLREGQRLIFREGRTKGV 81 (87)
T ss_pred ceeEEEEEEEEEcCCCcccCCCEeEEEEcCCEEEEEEEeccHhhccCCCeEEEEEEECCCCcEEccCCeEEEECCCcEEE
Confidence 58899999999999999999999999999999999999998899999999999999733999999999999999999999
Q ss_pred EEEEec
Q psy140 92 GNVTKV 97 (184)
Q Consensus 92 GvIt~V 97 (184)
|+|+++
T Consensus 82 G~I~~~ 87 (87)
T cd03708 82 GEVTKV 87 (87)
T ss_pred EEEEEC
Confidence 999874
No 4
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.87 E-value=2.5e-21 Score=142.07 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=80.4
Q ss_pred eeeEEEEEEEEccC-----CcccccCCeeEEEEccceeeEEEEecc-ceeecCCCeEEEEEEeccceEEeeeCCeEEEEC
Q psy140 12 AVWEFEGEILVLHH-----PTTISSRYQAMVHCGSIRQTASILSMS-AECLRTGDKAAVHFRFIKHPEYLRAGQRMVFRE 85 (184)
Q Consensus 12 at~~F~AqI~VL~h-----~~pI~~Gy~~vlH~gT~~~~arI~~LD-p~~L~pGd~A~V~~~f~~~Pv~le~g~RFvLRd 85 (184)
++++|+|+|++|++ +.+|++||++++|++|+++.|+|..+| +++|++||.+.|+|+|+ +|++++.++||+||+
T Consensus 2 ~~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~g~~~~v~i~l~-~p~~~~~g~rf~lR~ 80 (93)
T cd03706 2 PHDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPPGKEMVMPGEDTKVTLILR-RPMVLEKGQRFTLRD 80 (93)
T ss_pred cceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECCCCCcEeCCCCEEEEEEEEC-CcEEEeeCCEEEEEE
Confidence 46899999999997 589999999999999999999999997 88899999999999999 999999999999999
Q ss_pred -CceEEEEEEEec
Q psy140 86 -GRTKAVGNVTKV 97 (184)
Q Consensus 86 -grTIAvGvIt~V 97 (184)
++|||+|+|+++
T Consensus 81 ~~~tvg~G~V~~~ 93 (93)
T cd03706 81 GNRTIGTGLVTDT 93 (93)
T ss_pred CCEEEEEEEEEeC
Confidence 899999999874
No 5
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.86 E-value=7.1e-21 Score=142.88 Aligned_cols=85 Identities=27% Similarity=0.455 Sum_probs=79.1
Q ss_pred eeeEEEEEEEEccCC-cccccCCeeEEEEccceeeEEEEec--------------cceeecCCCeEEEEEEeccceEEee
Q psy140 12 AVWEFEGEILVLHHP-TTISSRYQAMVHCGSIRQTASILSM--------------SAECLRTGDKAAVHFRFIKHPEYLR 76 (184)
Q Consensus 12 at~~F~AqI~VL~h~-~pI~~Gy~~vlH~gT~~~~arI~~L--------------Dp~~L~pGd~A~V~~~f~~~Pv~le 76 (184)
++++|+|+|++|+|+ .+|++||+++||+|+++++|+|..+ +|++|++||.+.|+|++. +|+|+|
T Consensus 2 ~~~~F~A~i~vl~~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~-~pi~~e 80 (108)
T cd03704 2 VVTEFEAQIAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETT-GPICLE 80 (108)
T ss_pred cccEEEEEEEEEeCCCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeC-CcEEEE
Confidence 578999999999999 8999999999999999999999865 368999999999999999 999999
Q ss_pred eCC------eEEEEC-CceEEEEEEEec
Q psy140 77 AGQ------RMVFRE-GRTKAVGNVTKV 97 (184)
Q Consensus 77 ~g~------RFvLRd-grTIAvGvIt~V 97 (184)
.++ ||+||+ |+|||+|.|+++
T Consensus 81 ~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 81 KFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 994 999999 899999999864
No 6
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.84 E-value=2.5e-20 Score=135.58 Aligned_cols=81 Identities=32% Similarity=0.437 Sum_probs=77.1
Q ss_pred eeEEEEEEEEccC-----CcccccCCeeEEEEccceeeEEEEecc-ceeecCCCeEEEEEEeccceEEeeeCCeEEEEC-
Q psy140 13 VWEFEGEILVLHH-----PTTISSRYQAMVHCGSIRQTASILSMS-AECLRTGDKAAVHFRFIKHPEYLRAGQRMVFRE- 85 (184)
Q Consensus 13 t~~F~AqI~VL~h-----~~pI~~Gy~~vlH~gT~~~~arI~~LD-p~~L~pGd~A~V~~~f~~~Pv~le~g~RFvLRd- 85 (184)
+.+|+|+|++|++ +.+|++||++++|++|+++.|+|..++ +++|++||.+.|+|+|+ +|++++.++||+||+
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~~~~~i~~g~~~~v~l~l~-~pv~~~~~~rf~lR~~ 81 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPEGTEMVMPGDNVKMTVELI-HPIALEKGLRFAIREG 81 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccCcccccCCCCEEEEEEEEC-CcEEEecCCEEEEecC
Confidence 6899999999987 479999999999999999999999995 88899999999999999 999999999999999
Q ss_pred CceEEEEEE
Q psy140 86 GRTKAVGNV 94 (184)
Q Consensus 86 grTIAvGvI 94 (184)
++|||+|+|
T Consensus 82 ~~tig~G~V 90 (90)
T cd03707 82 GRTVGAGVI 90 (90)
T ss_pred CcEEEEEEC
Confidence 899999986
No 7
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.81 E-value=2.1e-19 Score=131.79 Aligned_cols=82 Identities=32% Similarity=0.578 Sum_probs=77.6
Q ss_pred eeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEecc------------ceeecCCCeEEEEEEeccceEEee---
Q psy140 12 AVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMS------------AECLRTGDKAAVHFRFIKHPEYLR--- 76 (184)
Q Consensus 12 at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~LD------------p~~L~pGd~A~V~~~f~~~Pv~le--- 76 (184)
.+++|+|+|++|+++.+|+.||++++|++|+++.|+|..++ +++|++||.+.|+|+|+ +|+|++
T Consensus 2 ~~~~f~a~i~~l~~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l~~~-~pi~~e~~~ 80 (102)
T cd01513 2 AVDKFVAEIYVLDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQ-KPVALETFS 80 (102)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEEEEC-CceEEEEhh
Confidence 56899999999999999999999999999999999999885 78999999999999999 999999
Q ss_pred ---eCCeEEEEC-CceEEEEEE
Q psy140 77 ---AGQRMVFRE-GRTKAVGNV 94 (184)
Q Consensus 77 ---~g~RFvLRd-grTIAvGvI 94 (184)
.+.||+||+ ++|+|+|+|
T Consensus 81 ~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 81 ENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred hCCCcccEEEEeCCCEEEEEEC
Confidence 888999999 899999986
No 8
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=4.5e-19 Score=160.25 Aligned_cols=99 Identities=28% Similarity=0.472 Sum_probs=92.4
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec--------------cceeecCCCeEEEEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM--------------SAECLRTGDKAAVHF 66 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L--------------Dp~~L~pGd~A~V~~ 66 (184)
||||++++++..+++|+|+|++|+++.+|+.||++++|++|++++|+|..+ +|++|++||.+.|+|
T Consensus 304 ~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l 383 (425)
T PRK12317 304 DVCGHPDNPPTVAEEFTAQIVVLQHPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKI 383 (425)
T ss_pred cEecCCCCCCCcccEEEEEEEEECCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEE
Confidence 789999877889999999999999999999999999999999999999987 267999999999999
Q ss_pred EeccceEEeeeC------CeEEEEC-CceEEEEEEEeccCC
Q psy140 67 RFIKHPEYLRAG------QRMVFRE-GRTKAVGNVTKVLPP 100 (184)
Q Consensus 67 ~f~~~Pv~le~g------~RFvLRd-grTIAvGvIt~V~~~ 100 (184)
+|. +|+|++.+ .||+||+ |+|||+|+|+++.+.
T Consensus 384 ~~~-~p~~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~ 423 (425)
T PRK12317 384 KPT-KPLVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPA 423 (425)
T ss_pred EEC-CeeEEEeCCcCCCCccEEEEECCCeEEEEEEEEeccC
Confidence 999 99999998 5999999 999999999998854
No 9
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.80 E-value=6.8e-19 Score=130.35 Aligned_cols=92 Identities=22% Similarity=0.365 Sum_probs=85.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCC-cccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccceEEeeeCC
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHP-TTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQ 79 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~-~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~le~g~ 79 (184)
|||+.|++ ..++++|++++++|... .+|+++|++++|++|+++.|+|..++.+.+++|+.+.++|+|+ +|++++.||
T Consensus 2 ~vl~~~~~-~~~~~~~~~~i~~l~~~~~~l~~~~~v~~~~Gt~~v~~ri~ll~~~~~~pg~~~~a~l~l~-~pl~~~~gd 79 (97)
T cd04094 2 DVLADPGS-LLPTRRLDVRLTVLLSAPRPLKHRQRVHLHHGTSEVLARVVLLDRDELAPGEEALAQLRLE-EPLVALRGD 79 (97)
T ss_pred CEEecCCC-cCCceEEEEEEEEECCCCccCCCCCeEEEEeccceEEEEEEeCCccccCCCCEEEEEEEEC-CcEeecCCC
Confidence 78999875 56689999999999764 6999999999999999999999999999999999999999999 999999999
Q ss_pred eEEEEC-C--ceEEEEEE
Q psy140 80 RMVFRE-G--RTKAVGNV 94 (184)
Q Consensus 80 RFvLRd-g--rTIAvGvI 94 (184)
||+||+ + +|||+|+|
T Consensus 80 rfilR~~~~~~tiggG~V 97 (97)
T cd04094 80 RFILRSYSPLRTLGGGRV 97 (97)
T ss_pred eEEEeeCCCCeEEEeEEC
Confidence 999999 6 89999986
No 10
>PLN03127 Elongation factor Tu; Provisional
Probab=99.80 E-value=4.4e-19 Score=163.01 Aligned_cols=96 Identities=32% Similarity=0.448 Sum_probs=89.9
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCC-----cccccCCeeEEEEccceeeEEEEec-cceeecCCCeEEEEEEeccceEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHP-----TTISSRYQAMVHCGSIRQTASILSM-SAECLRTGDKAAVHFRFIKHPEY 74 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~-----~pI~~Gy~~vlH~gT~~~~arI~~L-Dp~~L~pGd~A~V~~~f~~~Pv~ 74 (184)
||||+++ .+..+++|+|+|++|+|+ ++|..||++++|+||++++|+|..+ ++++|++||.+.|+|+|+ +|+|
T Consensus 344 ~Vl~~~~-~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~gd~a~v~l~~~-~p~~ 421 (447)
T PLN03127 344 QVICKPG-SIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVELPEGVKMVMPGDNVTAVFELI-SPVP 421 (447)
T ss_pred cEEecCC-CCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEeccCccccCCCCEEEEEEEEC-ceEE
Confidence 7999986 478899999999999984 7999999999999999999999877 688999999999999999 9999
Q ss_pred eeeCCeEEEEC-CceEEEEEEEecc
Q psy140 75 LRAGQRMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 75 le~g~RFvLRd-grTIAvGvIt~V~ 98 (184)
++.++||+||+ |+|||+|+|+++.
T Consensus 422 le~g~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 422 LEPGQRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred EeeCCEEEEEeCCcEEEEEEEEEec
Confidence 99999999999 8999999999975
No 11
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.80 E-value=5.4e-19 Score=159.97 Aligned_cols=98 Identities=32% Similarity=0.517 Sum_probs=91.2
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec--------------cceeecCCCeEEEEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM--------------SAECLRTGDKAAVHF 66 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L--------------Dp~~L~pGd~A~V~~ 66 (184)
||||+++++++.+++|+|+|.+|+++.+|+.||+++||+||++++|+|..+ +|++|++||.+.|+|
T Consensus 306 ~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l 385 (426)
T TIGR00483 306 DVCGHPDNPPKVAKEFTAQIVVLQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKF 385 (426)
T ss_pred eEEecCCCCCceeeEEEEEEEEECCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEE
Confidence 689999877889999999999999999999999999999999999999887 267999999999999
Q ss_pred EeccceEEeee------CCeEEEEC-CceEEEEEEEeccC
Q psy140 67 RFIKHPEYLRA------GQRMVFRE-GRTKAVGNVTKVLP 99 (184)
Q Consensus 67 ~f~~~Pv~le~------g~RFvLRd-grTIAvGvIt~V~~ 99 (184)
+|+ +|+|++. +.||+||+ |+|||+|.|+++.+
T Consensus 386 ~~~-~pi~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~~ 424 (426)
T TIGR00483 386 KPT-KPMVIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVDP 424 (426)
T ss_pred EEC-CeeEEeecccCCCCccEEEEECCCEEEEEEEEEeee
Confidence 999 9999998 45999999 99999999999874
No 12
>PRK12735 elongation factor Tu; Reviewed
Probab=99.80 E-value=5.5e-19 Score=159.25 Aligned_cols=96 Identities=27% Similarity=0.391 Sum_probs=89.5
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC-----CcccccCCeeEEEEccceeeEEEEec-cceeecCCCeEEEEEEeccceEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH-----PTTISSRYQAMVHCGSIRQTASILSM-SAECLRTGDKAAVHFRFIKHPEY 74 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h-----~~pI~~Gy~~vlH~gT~~~~arI~~L-Dp~~L~pGd~A~V~~~f~~~Pv~ 74 (184)
||||+++. +..+++|+|+|++|++ +++|+.||++++|+||++++|+|..+ ++++|++||.+.|+|+|+ +|+|
T Consensus 293 ~vl~~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~-~p~~ 370 (396)
T PRK12735 293 QVLAKPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNVKMTVELI-APIA 370 (396)
T ss_pred eEEEcCCC-CCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEccCCCceeCCCCEEEEEEEEC-ceEE
Confidence 69999964 6778999999999998 57999999999999999999999877 588999999999999999 9999
Q ss_pred eeeCCeEEEEC-CceEEEEEEEecc
Q psy140 75 LRAGQRMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 75 le~g~RFvLRd-grTIAvGvIt~V~ 98 (184)
++.++||+||+ |+|+|+|+|+++.
T Consensus 371 ~~~~~rfilR~~g~tv~~G~V~~v~ 395 (396)
T PRK12735 371 MEEGLRFAIREGGRTVGAGVVAKII 395 (396)
T ss_pred EeECCEEEEEcCCcEEEEEEEEEec
Confidence 99999999999 8999999999976
No 13
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.80 E-value=8.3e-19 Score=130.90 Aligned_cols=85 Identities=28% Similarity=0.401 Sum_probs=78.9
Q ss_pred eeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c----------ceeecCCCeEEEEEEeccceEEeee
Q psy140 12 AVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S----------AECLRTGDKAAVHFRFIKHPEYLRA 77 (184)
Q Consensus 12 at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D----------p~~L~pGd~A~V~~~f~~~Pv~le~ 77 (184)
.+++|+|+|++|+++.+|.+||++++|+||+++.|+|..+ | +++|++||.|.|+|+++ +|+|++.
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~-~pi~~e~ 80 (107)
T cd04093 2 SSTRFEARILTFNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELE-RPIPLEL 80 (107)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEEC-CeEEEEE
Confidence 4689999999999999999999999999999999999875 2 57999999999999999 9999999
Q ss_pred CC------eEEEEC-CceEEEEEEEec
Q psy140 78 GQ------RMVFRE-GRTKAVGNVTKV 97 (184)
Q Consensus 78 g~------RFvLRd-grTIAvGvIt~V 97 (184)
++ ||+||+ |.|+|+|.|+++
T Consensus 81 ~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 81 FKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred cccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 85 999999 999999999875
No 14
>PRK00049 elongation factor Tu; Reviewed
Probab=99.80 E-value=6.3e-19 Score=159.01 Aligned_cols=96 Identities=28% Similarity=0.396 Sum_probs=88.9
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC-----CcccccCCeeEEEEccceeeEEEEec-cceeecCCCeEEEEEEeccceEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH-----PTTISSRYQAMVHCGSIRQTASILSM-SAECLRTGDKAAVHFRFIKHPEY 74 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h-----~~pI~~Gy~~vlH~gT~~~~arI~~L-Dp~~L~pGd~A~V~~~f~~~Pv~ 74 (184)
||||+++. +..+++|+|+|++|+| +++|++||++++|+|+++++|+|... ++++|++||.+.|+|+|. +|+|
T Consensus 293 ~vl~~~~~-~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~l~~~~~~l~~g~~a~v~i~~~-~p~~ 370 (396)
T PRK00049 293 QVLAKPGS-ITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIELPEGVEMVMPGDNVEMTVELI-APIA 370 (396)
T ss_pred eEEecCCC-CCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEEecCCCcccCCCCEEEEEEEEC-ceEE
Confidence 68999864 5678999999999998 57999999999999999999999655 689999999999999999 9999
Q ss_pred eeeCCeEEEEC-CceEEEEEEEecc
Q psy140 75 LRAGQRMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 75 le~g~RFvLRd-grTIAvGvIt~V~ 98 (184)
++.++||+||+ |+|+|+|+|+++.
T Consensus 371 ~e~~~RfilR~~g~t~~~G~V~~v~ 395 (396)
T PRK00049 371 MEEGLRFAIREGGRTVGAGVVTKII 395 (396)
T ss_pred EeeCCEEEEecCCcEEEEEEEEEec
Confidence 99999999999 8999999999986
No 15
>KOG0459|consensus
Probab=99.80 E-value=2.7e-19 Score=163.21 Aligned_cols=98 Identities=23% Similarity=0.425 Sum_probs=92.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec---c----------ceeecCCCeEEEEEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM---S----------AECLRTGDKAAVHFR 67 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L---D----------p~~L~pGd~A~V~~~ 67 (184)
+|||+|+++++..+.|+|||.||+|.+.|++||.++||+|++-..|.|.++ | |+|++.|+.++++|+
T Consensus 384 fiL~~~~n~~~s~~~F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i~li~~idkktg~ksKkrprFvkq~~~~iarl~ 463 (501)
T KOG0459|consen 384 FILCSPNNPCKSGRTFDAQIVILEHKSIICAGYSCVLHIHTAVEEVEIKLIHLIDKKTGEKSKKRPRFVKQGQKCIARLE 463 (501)
T ss_pred eEEecCCCccccccEEEEEEEEEecCceeccCcceEeeeeeehhheeeeeeeeecccccccccCCCeeecCCcEEEEEEe
Confidence 699999999999999999999999999999999999999999999999776 3 789999999999999
Q ss_pred eccceEEeeeCC------eEEEEC-CceEEEEEEEeccC
Q psy140 68 FIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVLP 99 (184)
Q Consensus 68 f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~~ 99 (184)
.. .|+|++.+. ||+||| |+|||+|+|+++.+
T Consensus 464 t~-~~iCle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 464 TE-GPICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred cC-CcEehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 99 999999987 999999 99999999999863
No 16
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.79 E-value=1e-18 Score=160.48 Aligned_cols=100 Identities=19% Similarity=0.347 Sum_probs=91.2
Q ss_pred CeEecC-CCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c----------ceeecCCCeEEEE
Q psy140 1 MVMVSP-ALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S----------AECLRTGDKAAVH 65 (184)
Q Consensus 1 mVL~~p-~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D----------p~~L~pGd~A~V~ 65 (184)
||||++ ++|+..+++|+|+|++|+|+.+|..||+++||||+++++|+|..| | |++|++||.+.|+
T Consensus 312 ~vl~~~~~~p~~~~~~F~A~i~~l~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~ 391 (447)
T PLN00043 312 YVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVK 391 (447)
T ss_pred cEEccCCCCCCccccEEEEEEEEECCCCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEE
Confidence 789997 467788999999999999999999999999999999999999876 2 6799999999999
Q ss_pred EEeccceEEeeeCC------eEEEEC-CceEEEEEEEeccCCC
Q psy140 66 FRFIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVLPPS 101 (184)
Q Consensus 66 ~~f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~~~~ 101 (184)
|++. +|+|++.++ ||+||| +.|||+|.|+++....
T Consensus 392 i~~~-~pi~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~~~ 433 (447)
T PLN00043 392 MIPT-KPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKD 433 (447)
T ss_pred EEEC-CcEEEEecccCCCCceEEEEECCCeEEEEEEEEEeccC
Confidence 9999 999999854 999999 8999999999998543
No 17
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=1.2e-18 Score=156.87 Aligned_cols=96 Identities=27% Similarity=0.427 Sum_probs=88.9
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC-----CcccccCCeeEEEEccceeeEEEEecc-ceeecCCCeEEEEEEeccceEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH-----PTTISSRYQAMVHCGSIRQTASILSMS-AECLRTGDKAAVHFRFIKHPEY 74 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h-----~~pI~~Gy~~vlH~gT~~~~arI~~LD-p~~L~pGd~A~V~~~f~~~Pv~ 74 (184)
||||+++. +.++++|+|+|++|++ +++|+.||++++|+||+++.|+|..++ +++|++||.+.|+|+|+ +|+|
T Consensus 291 ~vl~~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~-~p~~ 368 (394)
T PRK12736 291 QVLAKPGS-IKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELPEGTEMVMPGDNVTITVELI-HPIA 368 (394)
T ss_pred eEEecCCC-CCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEecCCcceeCCCCEEEEEEEEC-ceEE
Confidence 68999874 5678999999999998 479999999999999999999998874 88999999999999999 9999
Q ss_pred eeeCCeEEEEC-CceEEEEEEEecc
Q psy140 75 LRAGQRMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 75 le~g~RFvLRd-grTIAvGvIt~V~ 98 (184)
++.++||+||+ |+|||+|+|+++.
T Consensus 369 ~~~~~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 369 MEQGLKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred EeeCCEEEEecCCcEEEEEEEEEee
Confidence 99999999999 7999999999875
No 18
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.79 E-value=1.5e-19 Score=164.41 Aligned_cols=96 Identities=42% Similarity=0.723 Sum_probs=93.3
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccceEEeeeCCe
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQR 80 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~le~g~R 80 (184)
|||+.+ .+++++++|+|++++|.||+.|..||.+++|+-|++++++|..+|..+|++||+..++++|.|+|.++++||+
T Consensus 431 MVl~~~-~~pkaVref~AeV~vl~HPT~I~aGye~v~H~etI~e~~~f~~id~~~L~~GD~g~vr~~fkyrP~~v~eGQ~ 509 (527)
T COG5258 431 MVLSAG-ADPKAVREFDAEVLVLRHPTTIRAGYEPVFHYETIREAVYFEEIDKGFLMPGDRGVVRMRFKYRPHHVEEGQK 509 (527)
T ss_pred eEecCC-CCchhhheecceEEEEeCCcEEecCceeeeEeeEeeheeEEEEcccccccCCCcceEEEEEEeCchhhccCcE
Confidence 899887 5699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCceEEEEEEEec
Q psy140 81 MVFREGRTKAVGNVTKV 97 (184)
Q Consensus 81 FvLRdgrTIAvGvIt~V 97 (184)
|+||+|+|.|+|.|+++
T Consensus 510 fvFReGrskgvG~v~~~ 526 (527)
T COG5258 510 FVFREGRSKGVGRVIRV 526 (527)
T ss_pred EEEecCCCccceEEecc
Confidence 99999999999999986
No 19
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.79 E-value=1e-18 Score=129.78 Aligned_cols=82 Identities=27% Similarity=0.477 Sum_probs=76.7
Q ss_pred eeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec--------------cceeecCCCeEEEEEEeccceEEeee
Q psy140 12 AVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM--------------SAECLRTGDKAAVHFRFIKHPEYLRA 77 (184)
Q Consensus 12 at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L--------------Dp~~L~pGd~A~V~~~f~~~Pv~le~ 77 (184)
.+++|+|+|++|+++.+|.+||++++|++++++.|+|..+ +|++|++||.+.|+|+|+ +|+++++
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~-~pi~~e~ 80 (104)
T cd03705 2 VAESFTAQVIVLNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQ-KPLVVET 80 (104)
T ss_pred cccEEEEEEEEECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEEC-CeeEEEE
Confidence 4689999999999999999999999999999999999977 258999999999999999 9999999
Q ss_pred C------CeEEEEC-CceEEEEEE
Q psy140 78 G------QRMVFRE-GRTKAVGNV 94 (184)
Q Consensus 78 g------~RFvLRd-grTIAvGvI 94 (184)
+ .||+||| |.|||+|.|
T Consensus 81 ~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 81 FSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred cccCCCccCEEEEeCCCEEEEEEC
Confidence 8 4999999 999999986
No 20
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=1.6e-18 Score=155.92 Aligned_cols=96 Identities=31% Similarity=0.435 Sum_probs=89.2
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC-----CcccccCCeeEEEEccceeeEEEEec-cceeecCCCeEEEEEEeccceEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH-----PTTISSRYQAMVHCGSIRQTASILSM-SAECLRTGDKAAVHFRFIKHPEY 74 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h-----~~pI~~Gy~~vlH~gT~~~~arI~~L-Dp~~L~pGd~A~V~~~f~~~Pv~ 74 (184)
||||+++. +..+++|+|+|++|++ +++|+.||++++|+||+++.|+|..+ ++++|++|+.+.|+|+|+ +|+|
T Consensus 291 ~vl~~~~~-~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~~~~~-~p~~ 368 (394)
T TIGR00485 291 MVLAKPGS-IKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDNVKMTVELI-SPIA 368 (394)
T ss_pred EEEecCCC-CCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEecCCcceeCCCCEEEEEEEEC-ceEE
Confidence 68999864 5678999999999998 47999999999999999999999987 588999999999999999 9999
Q ss_pred eeeCCeEEEEC-CceEEEEEEEecc
Q psy140 75 LRAGQRMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 75 le~g~RFvLRd-grTIAvGvIt~V~ 98 (184)
++.++||+||+ |+|+|+|+|+++.
T Consensus 369 ~~~~~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 369 LEQGMRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred EeECCEEEEecCCcEEEEEEEEEec
Confidence 99999999999 8999999999986
No 21
>KOG0460|consensus
Probab=99.77 E-value=6.5e-19 Score=158.36 Aligned_cols=99 Identities=28% Similarity=0.428 Sum_probs=93.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC-----CcccccCCeeEEEEccceeeEEEEecc-ceeecCCCeEEEEEEeccceEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH-----PTTISSRYQAMVHCGSIRQTASILSMS-AECLRTGDKAAVHFRFIKHPEY 74 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h-----~~pI~~Gy~~vlH~gT~~~~arI~~LD-p~~L~pGd~A~V~~~f~~~Pv~ 74 (184)
||||.|++ ++++++|+|++|+|+. .++|..+|+++||+.||+++|+|..++ .+++||||.+.+++.+. +|++
T Consensus 335 mvl~~pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~~~~mvMPGe~~~~~~~Li-~pm~ 412 (449)
T KOG0460|consen 335 MVLAKPGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPPEKEMVMPGENVKVEVTLI-RPMP 412 (449)
T ss_pred cEEecCCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccChHhcccCCCCeEEEEEEe-cccc
Confidence 89999997 9999999999999974 579999999999999999999999986 78999999999999999 9999
Q ss_pred eeeCCeEEEEC-CceEEEEEEEeccCCC
Q psy140 75 LRAGQRMVFRE-GRTKAVGNVTKVLPPS 101 (184)
Q Consensus 75 le~g~RFvLRd-grTIAvGvIt~V~~~~ 101 (184)
+|+||||.||+ |+|||.|+|+++++.+
T Consensus 413 le~GqrFtiReGg~TvgtGvvt~~l~lt 440 (449)
T KOG0460|consen 413 LEKGQRFTLREGGRTVGTGVVTDTLPLT 440 (449)
T ss_pred cCCCceeeEccCCeeeeeeeEeeeeecc
Confidence 99999999999 8999999999999833
No 22
>CHL00071 tufA elongation factor Tu
Probab=99.77 E-value=5.2e-18 Score=153.51 Aligned_cols=97 Identities=28% Similarity=0.441 Sum_probs=90.0
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC-----CcccccCCeeEEEEccceeeEEEEecc------ceeecCCCeEEEEEEec
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH-----PTTISSRYQAMVHCGSIRQTASILSMS------AECLRTGDKAAVHFRFI 69 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h-----~~pI~~Gy~~vlH~gT~~~~arI~~LD------p~~L~pGd~A~V~~~f~ 69 (184)
||||+++. +..+++|+|+|.+|++ +.+|..||++++|+|+.+++|+|..+. |++|++||.+.|+|+|+
T Consensus 301 ~vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~ 379 (409)
T CHL00071 301 MVLAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELI 379 (409)
T ss_pred EEEecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEEC
Confidence 68999874 6779999999999998 579999999999999999999999983 78999999999999999
Q ss_pred cceEEeeeCCeEEEEC-CceEEEEEEEeccC
Q psy140 70 KHPEYLRAGQRMVFRE-GRTKAVGNVTKVLP 99 (184)
Q Consensus 70 ~~Pv~le~g~RFvLRd-grTIAvGvIt~V~~ 99 (184)
+|+|++.++||+||+ ++|||+|+|+++++
T Consensus 380 -~pi~~e~~~rfilR~~~~tig~G~V~~~~~ 409 (409)
T CHL00071 380 -YPIAIEKGMRFAIREGGRTVGAGVVSKILK 409 (409)
T ss_pred -CeEEEeeCCEEEEecCCeEEEEEEEEEecC
Confidence 999999999999999 99999999999863
No 23
>PLN03126 Elongation factor Tu; Provisional
Probab=99.77 E-value=5.2e-18 Score=157.34 Aligned_cols=96 Identities=22% Similarity=0.378 Sum_probs=89.4
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCC-----cccccCCeeEEEEccceeeEEEEecc------ceeecCCCeEEEEEEec
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHP-----TTISSRYQAMVHCGSIRQTASILSMS------AECLRTGDKAAVHFRFI 69 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~-----~pI~~Gy~~vlH~gT~~~~arI~~LD------p~~L~pGd~A~V~~~f~ 69 (184)
||||+++. +..+++|+|+|++|+|+ .+|+.||++++|+|+.+++|+|..++ +++|++||.+.|+|+|+
T Consensus 370 ~VL~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~ 448 (478)
T PLN03126 370 MVLAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELI 448 (478)
T ss_pred cEEecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEEC
Confidence 68999975 67799999999999985 69999999999999999999999983 67899999999999999
Q ss_pred cceEEeeeCCeEEEEC-CceEEEEEEEecc
Q psy140 70 KHPEYLRAGQRMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 70 ~~Pv~le~g~RFvLRd-grTIAvGvIt~V~ 98 (184)
+|+|++.++||+||+ ++|+|+|+|+++.
T Consensus 449 -~Pi~~~~~~RfilR~~~~Tva~G~V~~v~ 477 (478)
T PLN03126 449 -VPVACEQGMRFAIREGGKTVGAGVIQSII 477 (478)
T ss_pred -CeEEEccCCEEEEecCCceEEEEEEEEec
Confidence 999999999999999 7999999999976
No 24
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.75 E-value=1.7e-17 Score=152.29 Aligned_cols=101 Identities=22% Similarity=0.390 Sum_probs=91.7
Q ss_pred CeEecCC-CCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c----------ceeecCCCeEEEE
Q psy140 1 MVMVSPA-LNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S----------AECLRTGDKAAVH 65 (184)
Q Consensus 1 mVL~~p~-~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D----------p~~L~pGd~A~V~ 65 (184)
||||+++ +++..+++|+|+|++|+++.+|+.||++++||+|.++.|+|..+ | |++|++|+.+.|+
T Consensus 312 ~vl~~~~~~p~~~~~~f~a~i~~l~~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~ 391 (446)
T PTZ00141 312 YVASDSKNDPAKECADFTAQVIVLNHPGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVK 391 (446)
T ss_pred eEEecCCCCCCccceEEEEEEEEECCCCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEE
Confidence 6899985 56678999999999999999999999999999999999999987 2 5799999999999
Q ss_pred EEeccceEEeeeC------CeEEEEC-CceEEEEEEEeccCCCC
Q psy140 66 FRFIKHPEYLRAG------QRMVFRE-GRTKAVGNVTKVLPPSG 102 (184)
Q Consensus 66 ~~f~~~Pv~le~g------~RFvLRd-grTIAvGvIt~V~~~~~ 102 (184)
|+|+ +|+|++++ .||+||| |+|||+|.|+++.....
T Consensus 392 l~~~-~pi~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~~ 434 (446)
T PTZ00141 392 MVPT-KPMCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKEG 434 (446)
T ss_pred EEEC-CceEEeecccCCCCccEEEEECCCEEEEEEEEEEecCCC
Confidence 9999 99999965 4999999 89999999999986554
No 25
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.8e-17 Score=151.22 Aligned_cols=97 Identities=30% Similarity=0.448 Sum_probs=90.2
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c----------ceeecCCCeEEEEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S----------AECLRTGDKAAVHF 66 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D----------p~~L~pGd~A~V~~ 66 (184)
+|++++++++..+.+|.|+|.+|.|+.+|.+||+|+||+|+++++|+|.++ | |.++++|+.++|.|
T Consensus 310 dv~~~~~n~~t~s~~f~a~i~vl~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i 389 (428)
T COG5256 310 DVIGHSDNPPTVSPEFTAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKI 389 (428)
T ss_pred cEeccCCCCcccccceEEEEEEEecCccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEE
Confidence 588899988888899999999999999999999999999999999999766 3 67999999999999
Q ss_pred EeccceEEeeeCC------eEEEEC-CceEEEEEEEecc
Q psy140 67 RFIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 67 ~f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~ 98 (184)
+++ +|+|++..+ ||+||| |+|||+|+|.++.
T Consensus 390 ~~~-kP~~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~ 427 (428)
T COG5256 390 EPE-KPLCLEKVSEIPQLGRFALRDMGQTIAAGKVLEVK 427 (428)
T ss_pred Eec-CceEeeecccCCccceEEEEeCCCeEEeEEEEecc
Confidence 999 999999766 999999 9999999999875
No 26
>KOG1143|consensus
Probab=99.68 E-value=9.4e-17 Score=146.33 Aligned_cols=102 Identities=49% Similarity=0.821 Sum_probs=97.6
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec-cceeecCCCeEEEEEEeccceEEeeeCC
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM-SAECLRTGDKAAVHFRFIKHPEYLRAGQ 79 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L-Dp~~L~pGd~A~V~~~f~~~Pv~le~g~ 79 (184)
|||..++-++..|..|+|+|.+|-|.+.|..|||..+|+++.+++|.|..| |.++|++|++|.|.|+|.++|+|+++|+
T Consensus 485 MVl~~~~~nP~~c~~F~A~~~lLfHaT~i~~GFQ~TVhiGsvrqTAvi~~I~~~d~lrtg~~AvV~f~F~~hPEyir~G~ 564 (591)
T KOG1143|consen 485 MVLAEIDHNPPVCYEFTANLLLLFHATYICEGFQATVHIGSVRQTAVITHIDDADCLRTGKWAVVKFCFAYHPEYIREGS 564 (591)
T ss_pred eEEeecCCCCceEEEEeeeehhhhhhHhheecceEEEEEcceeeeeeeeeecccccccCCceEEEEEEecCCchhccCCC
Confidence 899999877999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred eEEEECCceEEEEEEEeccCCCC
Q psy140 80 RMVFREGRTKAVGNVTKVLPPSG 102 (184)
Q Consensus 80 RFvLRdgrTIAvGvIt~V~~~~~ 102 (184)
+++||+|.|.|+|.|+++.+-..
T Consensus 565 ~ilfReG~tKGiG~Vt~Vfp~t~ 587 (591)
T KOG1143|consen 565 PILFREGKTKGIGEVTKVFPCTQ 587 (591)
T ss_pred eeeeecccccccceEEEEEeccc
Confidence 99999999999999999987553
No 27
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.67 E-value=5e-16 Score=143.67 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=90.2
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEecc------------ceeecCCCeEEEEEEe
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMS------------AECLRTGDKAAVHFRF 68 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~LD------------p~~L~pGd~A~V~~~f 68 (184)
||||+++.++..+++|+|+|.+|+ +.+|++||+++||+||.+++|+|..|+ +++|++||.+.|+|+|
T Consensus 322 ~VL~~~~~~~~~~~~f~a~i~~l~-~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~ 400 (474)
T PRK05124 322 DLLVAADEALQAVQHASADVVWMA-EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTF 400 (474)
T ss_pred cEEECCCCCCccceEEEEEEEEeC-CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEE
Confidence 799999877889999999999998 688999999999999999999999883 6799999999999999
Q ss_pred ccceEEeeeCC------eEEEE--C-CceEEEEEEEeccCCCC
Q psy140 69 IKHPEYLRAGQ------RMVFR--E-GRTKAVGNVTKVLPPSG 102 (184)
Q Consensus 69 ~~~Pv~le~g~------RFvLR--d-grTIAvGvIt~V~~~~~ 102 (184)
+ +|+|++.++ ||+|| + +.|||+|.|+++.....
T Consensus 401 ~-~pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~~~~~ 442 (474)
T PRK05124 401 D-EPLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPLAQAT 442 (474)
T ss_pred C-CeeccccCCcCCcceeEEEEECCCCceEEEEEEeccccccc
Confidence 9 999999998 59995 4 89999999999774333
No 28
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.1e-16 Score=137.86 Aligned_cols=96 Identities=29% Similarity=0.415 Sum_probs=89.8
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC-----CcccccCCeeEEEEccceeeEEEEecc-ceeecCCCeEEEEEEeccceEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH-----PTTISSRYQAMVHCGSIRQTASILSMS-AECLRTGDKAAVHFRFIKHPEY 74 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h-----~~pI~~Gy~~vlH~gT~~~~arI~~LD-p~~L~pGd~A~V~~~f~~~Pv~ 74 (184)
||||.|++ .+++.+|+|++|+|+. .+|+..+|+|+||++|+++++.+.+.+ .++++|||.+.+.++|. +|+.
T Consensus 291 qvLakpgs-i~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l~eg~emvmpgdnv~~~veLi-~pia 368 (394)
T COG0050 291 QVLAKPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITLPEGVEMVMPGDNVKMVVELI-HPIA 368 (394)
T ss_pred eEeecCCc-ccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEeccCCcceecCCCceEEEEEEe-eeee
Confidence 79999987 8999999999999975 579999999999999999999888765 58999999999999999 9999
Q ss_pred eeeCCeEEEEC-CceEEEEEEEecc
Q psy140 75 LRAGQRMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 75 le~g~RFvLRd-grTIAvGvIt~V~ 98 (184)
++.|+||.+|+ |+|+|.|+|++|.
T Consensus 369 ~e~G~rFaIreGgrtvgaGvV~~i~ 393 (394)
T COG0050 369 MEEGLRFAIREGGRTVGAGVVTKII 393 (394)
T ss_pred cCCCCEEEEEeCCeeeeeeEEeeec
Confidence 99999999999 8999999999985
No 29
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.62 E-value=4.6e-15 Score=140.88 Aligned_cols=98 Identities=11% Similarity=0.168 Sum_probs=88.9
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec------------cceeecCCCeEEEEEEe
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM------------SAECLRTGDKAAVHFRF 68 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L------------Dp~~L~pGd~A~V~~~f 68 (184)
||||++++++..+++|+|+|++|++. ++.+||++++|+||.+++|+|..+ +|++|++|+.+.|+|+|
T Consensus 318 ~vL~~~~~~~~~~~~f~a~i~~l~~~-~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~ 396 (632)
T PRK05506 318 DMLARADNRPEVADQFDATVVWMAEE-PLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLST 396 (632)
T ss_pred cEEecCCCCCcceeEEEEEEEEeccc-ccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEE
Confidence 79999987788899999999999865 577999999999999999999987 26899999999999999
Q ss_pred ccceEEeeeCC------eEEEEC---CceEEEEEEEeccCC
Q psy140 69 IKHPEYLRAGQ------RMVFRE---GRTKAVGNVTKVLPP 100 (184)
Q Consensus 69 ~~~Pv~le~g~------RFvLRd---grTIAvGvIt~V~~~ 100 (184)
+ +|+|++.++ ||+||| ++|||+|+|++....
T Consensus 397 ~-~pi~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~ 436 (632)
T PRK05506 397 D-APIAFDPYARNRTTGSFILIDRLTNATVGAGMIDFALRR 436 (632)
T ss_pred C-CEEeeeeccccccCceEEEEeccCCceEEEEEECccccc
Confidence 9 999999998 599965 799999999998873
No 30
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.61 E-value=6.1e-15 Score=109.77 Aligned_cols=81 Identities=12% Similarity=0.245 Sum_probs=73.6
Q ss_pred eeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c--------ceeecCCCeEEEEEEeccceEEeeeCC
Q psy140 12 AVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S--------AECLRTGDKAAVHFRFIKHPEYLRAGQ 79 (184)
Q Consensus 12 at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D--------p~~L~pGd~A~V~~~f~~~Pv~le~g~ 79 (184)
.+.+|+|+|.+|+ +.||..||++++|+||.++.|+|..+ | |++|..||.|.|+|+++ +|+|++.+.
T Consensus 2 ~~~~f~a~i~~l~-~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~~~~~l~~n~~a~v~i~~~-~pi~~d~~~ 79 (103)
T cd04095 2 VSDQFAATLVWMD-EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVELSLS-KPLAFDPYR 79 (103)
T ss_pred ccceeeEEEEEec-CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCccCCCEECCCCeEEEEEEeC-CccEecchh
Confidence 4679999999999 45999999999999999999999887 2 67999999999999999 999999876
Q ss_pred ------eEEEEC---CceEEEEEE
Q psy140 80 ------RMVFRE---GRTKAVGNV 94 (184)
Q Consensus 80 ------RFvLRd---grTIAvGvI 94 (184)
||+|+| |.|+|+|.|
T Consensus 80 ~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 80 ENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred hCCCcceEEEEECCCCcEEEEEeC
Confidence 999954 899999986
No 31
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.61 E-value=4.6e-15 Score=134.37 Aligned_cols=92 Identities=14% Similarity=0.222 Sum_probs=84.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEecc------------ceeecCCCeEEEEEEe
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMS------------AECLRTGDKAAVHFRF 68 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~LD------------p~~L~pGd~A~V~~~f 68 (184)
||||++++++..+++|+|+|.+|++ .+|+.||+++||+|+.+++|+|..++ ++++.+|+.+.|+|++
T Consensus 294 ~vl~~~~~~~~~~~~f~a~i~~l~~-~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~ 372 (406)
T TIGR02034 294 DLLAAADSAPEVADQFAATLVWMAE-EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSL 372 (406)
T ss_pred cEEEcCCCCCCcceEEEEEEEEeCh-hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEE
Confidence 6999998878899999999999985 69999999999999999999999872 4789999999999999
Q ss_pred ccceEEeeeCC------eEEE--EC-CceEEEEEE
Q psy140 69 IKHPEYLRAGQ------RMVF--RE-GRTKAVGNV 94 (184)
Q Consensus 69 ~~~Pv~le~g~------RFvL--Rd-grTIAvGvI 94 (184)
+ +|+|++.++ ||+| |+ |+|||+|.|
T Consensus 373 ~-~p~~~~~~~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 373 D-EPIAFDPYAENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred C-CeeccCcccCCCcceeEEEEECCCCCeEEEEeC
Confidence 9 999999998 9999 55 899999986
No 32
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.44 E-value=9.5e-13 Score=119.71 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=77.1
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC---------CcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccc
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH---------PTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKH 71 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h---------~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~ 71 (184)
||||++++++..+++|+|+|.+|++ +.+|++||++++|++++++.|+|..++. + .++|+|. +
T Consensus 312 ~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~------~--~~~~~l~-~ 382 (411)
T PRK04000 312 SVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSARK------D--EAEVKLK-R 382 (411)
T ss_pred cEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcCC------c--EEEEEEC-C
Confidence 7999998878889999999999987 6899999999999999999999999863 3 5667788 9
Q ss_pred eEEeeeCCeEEE--EC-C--ceEEEEEEE
Q psy140 72 PEYLRAGQRMVF--RE-G--RTKAVGNVT 95 (184)
Q Consensus 72 Pv~le~g~RFvL--Rd-g--rTIAvGvIt 95 (184)
|+|+++|+||+| |+ + ++||.|.|.
T Consensus 383 p~~~~~g~r~~~~~~~~~~~~~~~~~~~~ 411 (411)
T PRK04000 383 PVCAEEGDRVAISRRVGGRWRLIGYGIIK 411 (411)
T ss_pred cEecCCCCEEEEEEecCCcEEEEEEEEeC
Confidence 999999999999 67 6 899999873
No 33
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.43 E-value=1.3e-12 Score=121.02 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=78.0
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCC--------------cccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHP--------------TTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHF 66 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~--------------~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~ 66 (184)
||||++++.+..+++|+|++++|++. .+|+.||++++|++|+++.|+|..++.+. .++|
T Consensus 345 ~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~~~~-------~~~l 417 (460)
T PTZ00327 345 QVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIKDDG-------IAKL 417 (460)
T ss_pred cEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEEEEEEeCCCe-------EEEE
Confidence 69999987677788999999999873 79999999999999999999999986432 7789
Q ss_pred EeccceEEeeeCCeEEEEC-----CceEEEEEEEe
Q psy140 67 RFIKHPEYLRAGQRMVFRE-----GRTKAVGNVTK 96 (184)
Q Consensus 67 ~f~~~Pv~le~g~RFvLRd-----grTIAvGvIt~ 96 (184)
+|. +|+|++.|+||+||+ .+|||+|+|.+
T Consensus 418 ~l~-~P~~~~~gdr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 418 ELT-TPVCTSVGEKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EEC-ccEeccCCCEEEEEeccCCCcEEEEEEEEcC
Confidence 999 999999999999995 27999999985
No 34
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.31 E-value=1.8e-11 Score=110.87 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=74.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC---------CcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccc
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH---------PTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKH 71 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h---------~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~ 71 (184)
||||++++.+..+++|+|+|++|.+ +.+|+.||++++|++|+++.|+|..++. + .++++|. +
T Consensus 307 ~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~------~--~~~l~l~-~ 377 (406)
T TIGR03680 307 QVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSARK------D--EIEVKLK-R 377 (406)
T ss_pred cEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcCC------c--EEEEEEC-C
Confidence 7999998767788999999999976 3799999999999999999999999853 2 3677888 9
Q ss_pred eEEeeeCCeEEE--EC-C--ceEEEEEE
Q psy140 72 PEYLRAGQRMVF--RE-G--RTKAVGNV 94 (184)
Q Consensus 72 Pv~le~g~RFvL--Rd-g--rTIAvGvI 94 (184)
|+|++.|+||+| |. + ++||.|.|
T Consensus 378 p~~~~~g~r~~~~~~~~~~~~~~g~g~~ 405 (406)
T TIGR03680 378 PVCAEEGDRVAISRRVGGRWRLIGYGII 405 (406)
T ss_pred cEEcCCCCEEEEEEecCCceEEEEEEEe
Confidence 999999999999 55 4 79999987
No 35
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.16 E-value=2.1e-10 Score=109.59 Aligned_cols=88 Identities=18% Similarity=0.250 Sum_probs=74.9
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccceEEeeeCCe
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQR 80 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~le~g~R 80 (184)
||||+++ +...+..+++.+ .+..+|+.|++++||+||+++.|+|..+ +.+.++|+|+ +|+++..|+|
T Consensus 254 dvl~~~~-~~~~~~~~~~~l---~~~~~l~~~~~~~~~~gt~~~~~~i~~l--------~~~~~~l~l~-~p~~~~~gdr 320 (614)
T PRK10512 254 DWLLADA-PPEPFTRVIVEL---QTHTPLTQWQPLHIHHAASHVTGRVSLL--------EDNLAELVLD-TPLWLADNDR 320 (614)
T ss_pred CEEeCCC-CCccceeEEEEE---cCCccCCCCCEEEEEEcccEEEEEEEEc--------CCeEEEEEEC-CcccccCCCE
Confidence 6899885 466777665554 4567999999999999999999999998 3578999999 9999999999
Q ss_pred EEEEC---CceEEEEEEEeccCCC
Q psy140 81 MVFRE---GRTKAVGNVTKVLPPS 101 (184)
Q Consensus 81 FvLRd---grTIAvGvIt~V~~~~ 101 (184)
|+||+ .+|||+|+|+++.+..
T Consensus 321 ~ilr~~s~~~tigGg~Vld~~~~~ 344 (614)
T PRK10512 321 LVLRDISARNTLAGARVVMLNPPR 344 (614)
T ss_pred EEEEeCCCCEEEEEEEEcccCCcc
Confidence 99999 4899999999977644
No 36
>KOG0458|consensus
Probab=99.14 E-value=8.4e-11 Score=111.25 Aligned_cols=96 Identities=24% Similarity=0.389 Sum_probs=88.1
Q ss_pred eEe-cCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c----------ceeecCCCeEEEEE
Q psy140 2 VMV-SPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S----------AECLRTGDKAAVHF 66 (184)
Q Consensus 2 VL~-~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D----------p~~L~pGd~A~V~~ 66 (184)
|+| .++.+...+.+|.+++.+|+...||..|++..+|+|+..++|++..+ + |++|..|+.|.+++
T Consensus 485 i~~~~~~~~i~~~~~f~~~~~~f~~~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vel 564 (603)
T KOG0458|consen 485 IADSGPQFPISKTTRFVARITTFDINLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVEL 564 (603)
T ss_pred eeecCCCccccceeEEEEEEEEeeccccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeec
Confidence 567 67777888899999999999999999999999999999999998876 1 79999999999999
Q ss_pred EeccceEEeeeCC------eEEEEC-CceEEEEEEEecc
Q psy140 67 RFIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 67 ~f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~ 98 (184)
..+ +|+|++.+. ||++|. |+|||+|+|++|.
T Consensus 565 e~~-~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 565 ETE-RPICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred ccc-CchhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 999 999999776 999999 9999999999974
No 37
>KOG0052|consensus
Probab=99.09 E-value=6.9e-11 Score=107.57 Aligned_cols=101 Identities=23% Similarity=0.369 Sum_probs=89.4
Q ss_pred EecCC-CCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec--------------cceeecCCCeEEEEEE
Q psy140 3 MVSPA-LNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM--------------SAECLRTGDKAAVHFR 67 (184)
Q Consensus 3 L~~p~-~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L--------------Dp~~L~pGd~A~V~~~ 67 (184)
+.+.. .|+.....|.+|+.+|.|+..|..||.|+|.||+++++|+|.+| .|+++++|+.+++.+.
T Consensus 256 ~~dsK~~p~~~~~g~t~qviilnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~v 335 (391)
T KOG0052|consen 256 VGDSKNDPPVEAAGFTAQVIILNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMV 335 (391)
T ss_pred ecccccCCccccccceeeEEEecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeec
Confidence 34443 56778889999999999999999999999999999999999988 2789999999999999
Q ss_pred eccceEEeeeCC------eEEEEC-CceEEEEEEEeccCCCCCC
Q psy140 68 FIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVLPPSGHQ 104 (184)
Q Consensus 68 f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~~~~~~~ 104 (184)
|. +|+|++... ||.+|| ..|+|+|+|..+.......
T Consensus 336 p~-kp~~ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~~~~ 378 (391)
T KOG0052|consen 336 PG-KPLCVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKDAGA 378 (391)
T ss_pred cC-Cccccccccccccccchhhhhhhccccccceeeeeeccccc
Confidence 99 999999776 999999 7899999999988765433
No 38
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.78 E-value=4.6e-08 Score=92.96 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=57.7
Q ss_pred CcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccceEEeeeCCeEEEEC--CceEEEEEEEec
Q psy140 26 PTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQRMVFRE--GRTKAVGNVTKV 97 (184)
Q Consensus 26 ~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~le~g~RFvLRd--grTIAvGvIt~V 97 (184)
..+|++||.+++|++|.++.|+|..+|.+ .++++|. +|+++..|+||++|+ .+|||+|.|++.
T Consensus 274 ~~~l~~~~~~~~~~gt~~~~~~i~~l~~~--------~~~l~l~-~P~~~~~gd~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 274 EVPLLELQPYHIAHGMSVTTGKISLLDKG--------IALLTLD-APLILAKGDKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred CCccCCCCeEEEEEeceEEEEEEEEccCc--------EEEEEEC-CceecCCCCEEEEEeCCCEEEeeeEEecC
Confidence 35899999999999999999999998753 7788898 999999999999999 689999999987
No 39
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.99 E-value=4.5e-05 Score=69.86 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=86.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c--------ceeecCCCeEEEEEEe
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S--------AECLRTGDKAAVHFRF 68 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D--------p~~L~pGd~A~V~~~f 68 (184)
++||+.++++..++.|.|.|..+. +.||.+|-.-.+-+.|..+.++|..+ | .+.|.-++.+.|++.|
T Consensus 300 d~i~~~~~~~~~~~~f~A~vvWm~-~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~ 378 (431)
T COG2895 300 DLIVAADAPPAVADAFDADVVWMD-EEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISF 378 (431)
T ss_pred cEEEccCCCcchhhhcceeEEEec-CCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEec
Confidence 478899888999999999998775 45788999999999999999999887 2 5778889999999999
Q ss_pred ccceEEeeeCC------eEEEEC---CceEEEEEEEeccCCCCC
Q psy140 69 IKHPEYLRAGQ------RMVFRE---GRTKAVGNVTKVLPPSGH 103 (184)
Q Consensus 69 ~~~Pv~le~g~------RFvLRd---grTIAvGvIt~V~~~~~~ 103 (184)
+ +|+++..+. .|+|=| +.|+|+|.|.+-......
T Consensus 379 ~-~pi~fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l~~~~~ 421 (431)
T COG2895 379 D-KPIAFDAYAENRATGSFILIDRLTNGTVGAGMILASLSANTG 421 (431)
T ss_pred C-CceeecccccCcccccEEEEEcCCCCceeceeeechhhhcCC
Confidence 9 999998887 888877 679999999987654433
No 40
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=97.15 E-value=0.0072 Score=45.03 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=52.6
Q ss_pred eEEEEEEEEccC-----C-----cccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccceEEeeeCCeEEE
Q psy140 14 WEFEGEILVLHH-----P-----TTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQRMVF 83 (184)
Q Consensus 14 ~~F~AqI~VL~h-----~-----~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~le~g~RFvL 83 (184)
.+++.+.++|+. . .+|+.|-..++.++|+...|+|.... +|.+. +.|. +|+|.+.|+|++|
T Consensus 2 ~~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k------~d~~~--v~L~-~Pvc~~~g~rvai 72 (88)
T PF09173_consen 2 TELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVK------KDMAE--VELK-KPVCAEKGERVAI 72 (88)
T ss_dssp EEEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEE------TTEEE--EEEE-EEEE-STTSEEEE
T ss_pred EEEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEE------CCEEE--EEec-CCeEcCcCCeeee
Confidence 467778888853 1 58999999999999999999999863 45555 4566 9999999999977
Q ss_pred -EC--C--ceEEEEEE
Q psy140 84 -RE--G--RTKAVGNV 94 (184)
Q Consensus 84 -Rd--g--rTIAvGvI 94 (184)
|. + |.||.|.|
T Consensus 73 SRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 73 SRRIGNRWRLIGWGII 88 (88)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred ehhccCeEEEEEEEeC
Confidence 43 3 79999986
No 41
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0086 Score=56.02 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=71.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC-CcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccceEEeeeCC
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH-PTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEYLRAGQ 79 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h-~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~le~g~ 79 (184)
|||++++. ...+.+|++++.+... ..++..|...++|++..+++|+|..+..+ .++.+. +|+..-.++
T Consensus 250 ~~L~~~~~-~~v~~~~~~~~~i~~~~~~~l~~~~~~hi~~g~~~~~~~i~~l~~~---------~~l~~~-k~i~~~~~~ 318 (447)
T COG3276 250 DWLLKPEP-LEVTTRLIVELEIDPLFKKTLKQGQPVHIHVGLRSVTGRIVPLEKN---------AELNLV-KPIALGDND 318 (447)
T ss_pred cEeccCCC-CCcceEEEEEEEeccccccccCCCceEEEEEeccccceEeeecccc---------ceeeee-cccccccCc
Confidence 68888864 5789999999988743 56999999999999999999999987443 456677 778877788
Q ss_pred eEEEEC---CceEEEEEEEeccCCC
Q psy140 80 RMVFRE---GRTKAVGNVTKVLPPS 101 (184)
Q Consensus 80 RFvLRd---grTIAvGvIt~V~~~~ 101 (184)
+++||+ ..++++++|.......
T Consensus 319 ~l~lr~~~a~~~~~g~rvl~~~~~~ 343 (447)
T COG3276 319 RLVLRDNSAVIKLAGARVLSLNLPL 343 (447)
T ss_pred eEEEEcccceeeeccceEEecCCCC
Confidence 999998 3677777787766544
No 42
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.055 Score=49.68 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=69.4
Q ss_pred eEecCCCCCceeeEEEEEEEEccC---------CcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccce
Q psy140 2 VMVSPALNPVAVWEFEGEILVLHH---------PTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHP 72 (184)
Q Consensus 2 VL~~p~~p~~at~~F~AqI~VL~h---------~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~P 72 (184)
|+..|+..+....+|+.+..+|+. -.+|+.+-..++.++|+..-+.|... .+|.+ ++.|. +|
T Consensus 314 V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~------k~d~~--ev~Lk-~P 384 (415)
T COG5257 314 VVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSA------KKDEI--EVKLK-RP 384 (415)
T ss_pred cccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEe------cCceE--EEEec-cc
Confidence 566787778889999999999962 24999999999999999999998875 23344 45566 99
Q ss_pred EEeeeCCeEEE-EC-C---ceEEEEEEEe
Q psy140 73 EYLRAGQRMVF-RE-G---RTKAVGNVTK 96 (184)
Q Consensus 73 v~le~g~RFvL-Rd-g---rTIAvGvIt~ 96 (184)
+|.+.|+|+++ |. + |.||.|.|..
T Consensus 385 vcae~g~rvaisRri~~rWRLIG~G~ik~ 413 (415)
T COG5257 385 VCAEIGERVAISRRIGNRWRLIGYGTIKE 413 (415)
T ss_pred eecCCCCEEEEEeeecceEEEEeEEEEec
Confidence 99999999977 44 3 7999999975
No 43
>KOG0463|consensus
Probab=61.21 E-value=35 Score=32.57 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=21.4
Q ss_pred CCCCCcccccccccCCC-CCCCCCcccccC
Q psy140 143 PRDLDRAGQAGAKRGGV-EGAEPSETKTRQ 171 (184)
Q Consensus 143 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 171 (184)
+|+ .+.++.|++-|++ +|+|.++..+-|
T Consensus 574 ~r~-~gg~s~g~~~~a~~~gde~~s~~~gq 602 (641)
T KOG0463|consen 574 PRD-KGGPSGGPAVGAPPPGDEASSVGAGQ 602 (641)
T ss_pred ccc-CCCCCCCCccCCCCCCcccccccccc
Confidence 466 4577888888887 899998877655
No 44
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=51.08 E-value=49 Score=21.64 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=34.6
Q ss_pred eeeEEEEEEEEccCCcccccCCeeEEEEccce-eeEEEEeccce--eecCCCeEEEEEEec
Q psy140 12 AVWEFEGEILVLHHPTTISSRYQAMVHCGSIR-QTASILSMSAE--CLRTGDKAAVHFRFI 69 (184)
Q Consensus 12 at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~-~~arI~~LDp~--~L~pGd~A~V~~~f~ 69 (184)
+.+.|.++|..+++.. ..+...+.++... ..++|..-... .|++||.+.+.|+..
T Consensus 3 ~~N~l~g~V~~ie~~g---~~~~v~~~~~~~~~l~a~it~~~~~~L~L~~G~~V~~~ik~~ 60 (64)
T PF03459_consen 3 ARNQLPGTVESIENLG---SEVEVTLDLGGGETLTARITPESAEELGLKPGDEVYASIKAS 60 (64)
T ss_dssp TSEEEEEEEEEEEESS---SEEEEEEEETTSEEEEEEEEHHHHHHCT-STT-EEEEEE-GG
T ss_pred CCcEEEEEEEEEEECC---CeEEEEEEECCCCEEEEEEcHHHHHHcCCCCCCEEEEEEehh
Confidence 4567899998876533 3445667777766 66666543223 367999999888754
No 45
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=49.85 E-value=36 Score=21.59 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=19.1
Q ss_pred eeEEEEeccceeecCCCeEEEEEEe
Q psy140 44 QTASILSMSAECLRTGDKAAVHFRF 68 (184)
Q Consensus 44 ~~arI~~LDp~~L~pGd~A~V~~~f 68 (184)
+.|....++.+.|.||+.+.+++.|
T Consensus 21 CgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 21 CGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred cCCEEeeCCcceECCCCEEEEEEEC
Confidence 4455556677889999999988865
No 46
>KOG0466|consensus
Probab=44.73 E-value=21 Score=33.14 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=62.0
Q ss_pred EecCCCCCceeeEEEEEEEEccC--------------CcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEe
Q psy140 3 MVSPALNPVAVWEFEGEILVLHH--------------PTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRF 68 (184)
Q Consensus 3 L~~p~~p~~at~~F~AqI~VL~h--------------~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f 68 (184)
|..-+..+....+.+...++|.. ..-+..+--.++.+++...-++|..+. +|.+ +|.+
T Consensus 355 lG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk------~d~~--k~~L 426 (466)
T KOG0466|consen 355 LGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVK------ADMA--KIQL 426 (466)
T ss_pred HhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecccccCceEEEEe------ccee--eeEe
Confidence 44444456777788888777732 135778888899999999888888753 3333 4566
Q ss_pred ccceEEeeeCCeEEEEC-----CceEEEEEEEe
Q psy140 69 IKHPEYLRAGQRMVFRE-----GRTKAVGNVTK 96 (184)
Q Consensus 69 ~~~Pv~le~g~RFvLRd-----grTIAvGvIt~ 96 (184)
. .|+|.+.|+++.|-. =|.||.|.|.+
T Consensus 427 t-~P~CteigEkiAlSRrvekhWRLIGwg~I~~ 458 (466)
T KOG0466|consen 427 T-SPVCTEIGEKIALSRRVEKHWRLIGWGQIKA 458 (466)
T ss_pred c-CchhcccchhhhhhhhhhhheEEecceeEeC
Confidence 6 899999999887743 27999999975
No 47
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=28.78 E-value=1.4e+02 Score=26.92 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=32.5
Q ss_pred EEEccceeeEEEEeccceeecCCCeEEEEEEeccceEE-eeeCCeEEEEC-CceEEEEEE
Q psy140 37 VHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPEY-LRAGQRMVFRE-GRTKAVGNV 94 (184)
Q Consensus 37 lH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~-le~g~RFvLRd-grTIAvGvI 94 (184)
+-.+...++|+|..++. ..+.++|+ +|.. +.+||-.+|=+ ...+|.|+|
T Consensus 299 ~R~~~~~~~~~~~~~~~--------~~~~v~~~-~p~~~v~pGQ~~v~Y~~~~~lggg~I 349 (349)
T cd01998 299 IRYRQPPVPCTIEPLDD--------GRLEVIFD-EPQRAVAPGQAAVFYDGDRVLGGGII 349 (349)
T ss_pred EccCCCCcCEEEEEeCC--------CeEEEEeC-CCCcccCCCCEEEEEECCEEEeeEEC
Confidence 33444445666654321 24567787 6665 78999999988 678899976
No 48
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=27.91 E-value=3.8e+02 Score=24.58 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=33.6
Q ss_pred EEEccceeeEEEEeccceeecCCCeEEEEEEeccceE-EeeeCCeEEEEC-CceEEEEEEE
Q psy140 37 VHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKHPE-YLRAGQRMVFRE-GRTKAVGNVT 95 (184)
Q Consensus 37 lH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv-~le~g~RFvLRd-grTIAvGvIt 95 (184)
+-.+...++|+|..++ ...+.+.|+ +|. .+-+||..+|=+ ...+|+|+|.
T Consensus 295 ~R~~~~~~~~~v~~~~--------~~~~~v~f~-~p~~avapGQ~~v~Y~~~~vlGgG~I~ 346 (362)
T PRK14664 295 IRYRSRPIPCRVKRLE--------DGRLLVRFL-AEASAIAPGQSAVFYEGRRVLGGAFIA 346 (362)
T ss_pred EccCCCCcCEEEEEec--------CCeEEEEeC-CCCcCcCCCcEEEEEECCEEEEEEEEc
Confidence 3444444566665432 124667788 774 477999999888 5899999994
No 49
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=26.99 E-value=4.2e+02 Score=24.24 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=27.1
Q ss_pred eeeEEEEeccceeecCCCeEEEEEEeccceEE-eeeCCeEEEEC-CceEEEEEE
Q psy140 43 RQTASILSMSAECLRTGDKAAVHFRFIKHPEY-LRAGQRMVFRE-GRTKAVGNV 94 (184)
Q Consensus 43 ~~~arI~~LDp~~L~pGd~A~V~~~f~~~Pv~-le~g~RFvLRd-grTIAvGvI 94 (184)
-+.|+|...+. ..+.++|+ +|.. +-+||-.+|=+ ...+|.|+|
T Consensus 312 ~~~~~v~~~~~--------~~~~V~f~-eP~~avaPGQ~aVfY~~d~vLGgG~I 356 (356)
T PF03054_consen 312 PVPCTVEPIGD--------GRLRVEFD-EPQRAVAPGQSAVFYDGDRVLGGGII 356 (356)
T ss_dssp -EEEEEEE-SS--------S-EEEEEE-EEEET--TTSEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEecC--------CeEEEEeC-CCCCCCCCCcEEEEEECCEEEEEEEC
Confidence 35566655422 33456677 6664 67999999988 688899987
No 50
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=23.20 E-value=1.9e+02 Score=26.18 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=23.3
Q ss_pred EEEEeccceE-EeeeCCeEEEEC-CceEEEEEE
Q psy140 64 VHFRFIKHPE-YLRAGQRMVFRE-GRTKAVGNV 94 (184)
Q Consensus 64 V~~~f~~~Pv-~le~g~RFvLRd-grTIAvGvI 94 (184)
+.++|+ +|. .+-+||..+|=+ .+.+|+|+|
T Consensus 321 ~~v~f~-~p~~~v~pGQ~~v~Y~~~~~lggg~I 352 (352)
T TIGR00420 321 IEVIFD-EPQAGVTPGQSAVLYKGDICLGGGII 352 (352)
T ss_pred EEEEeC-CCCcccCCCcEEEEEECCEEEEeEEC
Confidence 566777 674 467999999988 578899986
No 51
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=20.47 E-value=2.6e+02 Score=25.51 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=24.6
Q ss_pred EEEEeccceE-EeeeCCeEEEEC-CceEEEEEEE
Q psy140 64 VHFRFIKHPE-YLRAGQRMVFRE-GRTKAVGNVT 95 (184)
Q Consensus 64 V~~~f~~~Pv-~le~g~RFvLRd-grTIAvGvIt 95 (184)
+.+.|+ +|. .+-+||..+|=+ ...+|+|+|.
T Consensus 327 ~~v~f~-~p~~av~pGQ~~v~Y~~~~vlGgg~I~ 359 (360)
T PRK14665 327 LHVQLH-EPLTAIAEGQAAAFYKDGLLLGGGIIT 359 (360)
T ss_pred EEEEeC-CCCcccCCCcEEEEEECCEEEEEEEEc
Confidence 567787 774 477999999888 6889999984
Done!