Query psy140
Match_columns 184
No_of_seqs 153 out of 1285
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 16:58:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e1y_E Eukaryotic peptide chai 99.8 1.4E-20 4.9E-25 154.8 11.9 99 1-100 83-202 (204)
2 1f60_A Elongation factor EEF1A 99.8 3.3E-19 1.1E-23 161.2 12.3 99 1-100 322-442 (458)
3 1jny_A EF-1-alpha, elongation 99.8 2.1E-18 7.3E-23 154.4 13.6 100 1-101 311-431 (435)
4 3j2k_7 ERF3, eukaryotic polype 99.8 2.3E-18 7.8E-23 155.0 13.6 97 1-98 321-438 (439)
5 1r5b_A Eukaryotic peptide chai 99.8 2.1E-18 7.2E-23 156.3 10.8 97 1-98 350-466 (467)
6 2c78_A Elongation factor TU-A; 99.8 9E-18 3.1E-22 148.5 13.5 96 1-98 302-404 (405)
7 3mca_A HBS1, elongation factor 99.7 9.8E-18 3.4E-22 156.6 11.5 96 1-98 483-592 (592)
8 1d2e_A Elongation factor TU (E 99.7 2.5E-17 8.6E-22 145.7 13.3 99 1-101 284-389 (397)
9 3p26_A Elongation factor 1 alp 99.7 3.1E-17 1E-21 148.7 13.9 100 1-101 356-479 (483)
10 3izq_1 HBS1P, elongation facto 99.7 4.5E-17 1.6E-21 152.7 12.4 97 1-98 490-610 (611)
11 1zun_B Sulfate adenylate trans 99.7 2E-16 6.8E-21 141.5 13.9 94 1-96 320-434 (434)
12 2elf_A Protein translation elo 99.6 5.3E-15 1.8E-19 130.8 13.5 91 1-95 271-370 (370)
13 1wb1_A Translation elongation 99.6 1.6E-15 5.3E-20 138.3 6.0 97 1-99 278-395 (482)
14 3avx_A Elongation factor TS, e 99.6 1.5E-14 5.2E-19 145.1 13.1 99 1-101 575-680 (1289)
15 1kk1_A EIF2gamma; initiation o 99.5 6.1E-14 2.1E-18 124.1 12.2 86 1-95 310-409 (410)
16 1s0u_A EIF-2-gamma, translatio 99.5 6.5E-14 2.2E-18 124.0 11.6 86 1-95 308-407 (408)
17 3sjy_A Translation initiation 99.4 1.1E-12 3.7E-17 116.0 12.9 86 1-95 302-402 (403)
18 2der_A TRNA-specific 2-thiouri 25.2 3.3E+02 0.011 23.5 10.0 34 64-98 341-376 (380)
19 2lv4_A Putative outer membrane 21.2 65 0.0022 24.9 2.9 22 48-69 52-73 (146)
No 1
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=154.85 Aligned_cols=99 Identities=20% Similarity=0.398 Sum_probs=92.1
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c----------ceeecCCCeEEEEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S----------AECLRTGDKAAVHF 66 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D----------p~~L~pGd~A~V~~ 66 (184)
||||++++++..+++|+|+|++|+++.+|.+||++++|+||.+++|+|..| | +++|++||.+.|+|
T Consensus 83 ~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v~l 162 (204)
T 3e1y_E 83 FILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL 162 (204)
T ss_dssp CEEBCSSSCCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEEEEE
T ss_pred eEEECCCCCCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEEEEE
Confidence 689999988899999999999999998999999999999999999999976 2 47999999999999
Q ss_pred EeccceEEeeeCC------eEEEEC-CceEEEEEEEeccCC
Q psy140 67 RFIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVLPP 100 (184)
Q Consensus 67 ~f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~~~ 100 (184)
++. +|+|++.++ ||+||| ++|||+|+|+++.+.
T Consensus 163 ~~~-~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 163 RTA-GTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp EES-SCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred EEC-CeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 999 999999984 999999 899999999999875
No 2
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.79 E-value=3.3e-19 Score=161.25 Aligned_cols=99 Identities=26% Similarity=0.400 Sum_probs=92.4
Q ss_pred CeEecCCC-CCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c----------ceeecCCCeEEEE
Q psy140 1 MVMVSPAL-NPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S----------AECLRTGDKAAVH 65 (184)
Q Consensus 1 mVL~~p~~-p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D----------p~~L~pGd~A~V~ 65 (184)
||||++++ ++..+++|+|+|++|+|+.+|.+||+++||+||++++|+|..+ | +++|++||.+.|+
T Consensus 322 ~vl~~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~ 401 (458)
T 1f60_A 322 NVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVK 401 (458)
T ss_dssp CEEEETTSSCCCCCSEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEE
T ss_pred eEEecCCCCCCceeeEEEEEEEEeCCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEEEEE
Confidence 68999974 8899999999999999999999999999999999999999876 2 5689999999999
Q ss_pred EEeccceEEeeeCC------eEEEEC-CceEEEEEEEeccCC
Q psy140 66 FRFIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVLPP 100 (184)
Q Consensus 66 ~~f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~~~ 100 (184)
|+|. +|+|++.|+ ||+||| ++|||+|+|+++.+.
T Consensus 402 ~~~~-~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 402 FVPS-KPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp EEES-SCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred EEEC-CeEEEecCccCCCCCcEEEEECCeEEEEEEEEeeccc
Confidence 9999 999999999 999999 899999999999875
No 3
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.77 E-value=2.1e-18 Score=154.42 Aligned_cols=100 Identities=28% Similarity=0.503 Sum_probs=92.4
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c----------ceeecCCCeEEEEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S----------AECLRTGDKAAVHF 66 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D----------p~~L~pGd~A~V~~ 66 (184)
||||++++++..+.+|+|+|++|+++.+|.+||+++||+||++++|+|..+ | +++|++||.+.|+|
T Consensus 311 d~l~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~ 390 (435)
T 1jny_A 311 DVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKF 390 (435)
T ss_dssp CEEECTTSCCCEESEEEEEEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEE
T ss_pred cEecCCCCCceEeEEEEEEEEEECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEE
Confidence 689999878999999999999999999999999999999999999999876 3 56899999999999
Q ss_pred EeccceEEeeeCC------eEEEEC-CceEEEEEEEeccCCC
Q psy140 67 RFIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVLPPS 101 (184)
Q Consensus 67 ~f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~~~~ 101 (184)
+|. +|+|++.++ ||+||| ++|||+|+|+++.+..
T Consensus 391 ~~~-~p~~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~~ 431 (435)
T 1jny_A 391 KPI-KPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPAK 431 (435)
T ss_dssp EES-SCEECCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC--
T ss_pred EEC-ceEEEecCCcCCcCccEEEEECCeEEEEEEEeeecCcc
Confidence 999 999999999 999999 7999999999987643
No 4
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.77 E-value=2.3e-18 Score=154.97 Aligned_cols=97 Identities=20% Similarity=0.373 Sum_probs=91.3
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c----------ceeecCCCeEEEEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S----------AECLRTGDKAAVHF 66 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D----------p~~L~pGd~A~V~~ 66 (184)
||||++++++..+++|+|+|++|+|+.+|..||++++||||.+++|+|..+ | |++|+.||.+.|+|
T Consensus 321 ~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~ 400 (439)
T 3j2k_7 321 FILCDPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARL 400 (439)
T ss_pred EEecCCCCCCceeeEEEEEEEEeCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEE
Confidence 689999988899999999999999999999999999999999999999976 2 67999999999999
Q ss_pred EeccceEEeeeCC------eEEEEC-CceEEEEEEEecc
Q psy140 67 RFIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 67 ~f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~ 98 (184)
++. +|+|++.++ ||+||| |+|||+|+|+++.
T Consensus 401 ~~~-~p~~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~ 438 (439)
T 3j2k_7 401 RTA-GTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 438 (439)
T ss_pred EeC-CeEEEeeccccccCCCEEEEECCceEEEEEEEEec
Confidence 999 999999997 999999 9999999999986
No 5
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.76 E-value=2.1e-18 Score=156.32 Aligned_cols=97 Identities=24% Similarity=0.354 Sum_probs=90.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c---------ceeecCCCeEEEEEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S---------AECLRTGDKAAVHFR 67 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D---------p~~L~pGd~A~V~~~ 67 (184)
||||++++++..+++|+|+|++|+++.+|..||+++||+||++++|+|..+ | |++|++||.+.|+|+
T Consensus 350 ~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~~v~l~ 429 (467)
T 1r5b_A 350 YVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELE 429 (467)
T ss_dssp CEEECSSSCCCEEEEEEEEEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBCCEEEE
T ss_pred EEEeCCCCCCccceEEEEEEEEeCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEEEEEEE
Confidence 689999888999999999999999999999999999999999999999764 2 568999999999999
Q ss_pred eccceEEeeeCC------eEEEEC-CceEEEEEEEecc
Q psy140 68 FIKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 68 f~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~ 98 (184)
|. +|+|++.|+ ||+||| ++|||+|+|+++.
T Consensus 430 ~~-~p~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~ 466 (467)
T 1r5b_A 430 TQ-TPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKIL 466 (467)
T ss_dssp EE-EEEECCCTTTCHHHHEEEEECSSSCEEEEEEEEEE
T ss_pred EC-cEEEEEEcCcCCCCccEEEEECCeEEEEEEEEEec
Confidence 99 999999995 999999 9999999999985
No 6
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.75 E-value=9e-18 Score=148.53 Aligned_cols=96 Identities=29% Similarity=0.414 Sum_probs=88.6
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCC-----cccccCCeeEEEEccceeeEEEEecc-ceeecCCCeEEEEEEeccceEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHP-----TTISSRYQAMVHCGSIRQTASILSMS-AECLRTGDKAAVHFRFIKHPEY 74 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~-----~pI~~Gy~~vlH~gT~~~~arI~~LD-p~~L~pGd~A~V~~~f~~~Pv~ 74 (184)
||||+++ ++..+++|+|+|++|++. ++|..||++++|++|++++|+|...+ ++++++||.+.|+|+|. +|+|
T Consensus 302 ~~l~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~~~~~~v~~~~~-~p~~ 379 (405)
T 2c78_A 302 QVLAKPG-SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELI-KPVA 379 (405)
T ss_dssp CEEESTT-SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECCTTCCCBCTTCEEEEEEEEE-EEEE
T ss_pred EEEEcCC-CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEEEccCccccCCCCEEEEEEEEC-ceEE
Confidence 6899997 478999999999999853 69999999999999999999999444 67999999999999999 9999
Q ss_pred eeeCCeEEEEC-CceEEEEEEEecc
Q psy140 75 LRAGQRMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 75 le~g~RFvLRd-grTIAvGvIt~V~ 98 (184)
++.|+||+||+ ++|||+|+|+++.
T Consensus 380 ~~~~~rf~lr~~~~ti~~G~i~~~~ 404 (405)
T 2c78_A 380 LEEGLRFAIREGGRTVGAGVVTKIL 404 (405)
T ss_dssp ECTTCEEEEEETTEEEEEEEEEEEC
T ss_pred EccCCEEEEEcCCeEEEEEEEEecc
Confidence 99999999999 7999999999985
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.73 E-value=9.8e-18 Score=156.62 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=88.4
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec------cceeecCCCeEEEEEE-eccceE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM------SAECLRTGDKAAVHFR-FIKHPE 73 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L------Dp~~L~pGd~A~V~~~-f~~~Pv 73 (184)
||||++++++..++.|+|++++|+++.+|.+||+++|||||++++|+| .| ++++|++||.+.|+|+ +. +|+
T Consensus 483 ~vl~~~~~~~~~~~~f~a~v~~~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~~~~~~~~~l~~gd~~~v~l~fl~-~p~ 560 (592)
T 3mca_A 483 DILSNYENPVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL-KIVTVNNKRSRHIASRKRALVRISFLD-GLF 560 (592)
T ss_dssp CEEECSSSCCEEESEEEEEEEECSCSSCEETTEEEEEECSSCEEEEEE-EEEESSSSCCSEECSSCEEEEEEEESS-SCE
T ss_pred EEeccCCCCccccCeEEEEEEEECCCccCCCCCEEEEEEcCcEEEEEE-EEEeccccchhccCCCCEEEEEEEECC-CcE
Confidence 699999988899999999999999999999999999999999999999 54 3889999999999999 66 999
Q ss_pred Eee------eCCeEEEEC-CceEEEEEEEecc
Q psy140 74 YLR------AGQRMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 74 ~le------~g~RFvLRd-grTIAvGvIt~V~ 98 (184)
|++ .++||+||+ ++|||+|+|++|.
T Consensus 561 ~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 561 PLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp EECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred EEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 994 445999999 8999999999874
No 8
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.73 E-value=2.5e-17 Score=145.72 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=90.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCC-----cccccCCeeEEEEccceeeEEEEecc-ceeecCCCeEEEEEEeccceEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHP-----TTISSRYQAMVHCGSIRQTASILSMS-AECLRTGDKAAVHFRFIKHPEY 74 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~-----~pI~~Gy~~vlH~gT~~~~arI~~LD-p~~L~pGd~A~V~~~f~~~Pv~ 74 (184)
||||+++. +..+++|+|+|++|++. .+|..||++++|++|++++|+|...+ ++++++||.+.|+|+|. +|+|
T Consensus 284 ~~l~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~l~~~~~~l~~~~~~~v~~~~~-~p~~ 361 (397)
T 1d2e_A 284 LVMAKPGS-IQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILR-QPMI 361 (397)
T ss_dssp CEEESTTS-CCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECCSSCCCBCTTCEEEEEEEEE-EEEC
T ss_pred eEEeCCCC-CCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEEEcCCcccccCCCEEEEEEEEC-CeEE
Confidence 68999874 78899999999999874 69999999999999999999999444 68999999999999999 9999
Q ss_pred eeeCCeEEEEC-CceEEEEEEEeccCCC
Q psy140 75 LRAGQRMVFRE-GRTKAVGNVTKVLPPS 101 (184)
Q Consensus 75 le~g~RFvLRd-grTIAvGvIt~V~~~~ 101 (184)
++.|+||+||+ ++|||+|+|+++.+..
T Consensus 362 ~~~~~r~~lr~~~~ti~~G~i~~~~~~~ 389 (397)
T 1d2e_A 362 LEKGQRFTLRDGNRTIGTGLVTDTPAMT 389 (397)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEECCCCC
T ss_pred EccCCeEEEEeCCeEEEEEEEeecccCc
Confidence 99999999999 7999999999998754
No 9
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.73 E-value=3.1e-17 Score=148.70 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=91.4
Q ss_pred CeEecCCC-CCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c---------ceeecCCCeEEEEE
Q psy140 1 MVMVSPAL-NPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S---------AECLRTGDKAAVHF 66 (184)
Q Consensus 1 mVL~~p~~-p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D---------p~~L~pGd~A~V~~ 66 (184)
||||++++ ++..+++|+|+|++|+|+.+|.+||+++|||||.+++|+|..| | +++|++||.+.|+|
T Consensus 356 ~vl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~~~~~~l~~~~~~~v~~ 435 (483)
T 3p26_A 356 DLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEI 435 (483)
T ss_dssp CEEECTTCCCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECCSCCSCBCSSCEEEEEE
T ss_pred EEEEcCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccccCccCcCCCCEEEEEE
Confidence 79999987 8999999999999999999999999999999999999999987 3 45899999999999
Q ss_pred Ee---ccceEEeeeCC------eEEEEC-CceEEEEEEEeccCCC
Q psy140 67 RF---IKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVLPPS 101 (184)
Q Consensus 67 ~f---~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~~~~ 101 (184)
+| . +|+|++.+. ||+||+ |+|||+|+|+++....
T Consensus 436 ~~~~~~-~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~~~ 479 (483)
T 3p26_A 436 ELIEVK-RWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQHH 479 (483)
T ss_dssp EECSCS-SCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC--
T ss_pred EECCCC-CcEEEEecccCccCCCEEEEeCCCEEEEEEEEEecccc
Confidence 99 6 899999876 999999 9999999999987643
No 10
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.5e-17 Score=152.75 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=90.3
Q ss_pred CeEecCCC-CCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec----c---------ceeecCCCeEEEEE
Q psy140 1 MVMVSPAL-NPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM----S---------AECLRTGDKAAVHF 66 (184)
Q Consensus 1 mVL~~p~~-p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L----D---------p~~L~pGd~A~V~~ 66 (184)
||||++++ ++..++.|+|+|++|+|+.+|.+||+++|||||++++|+|..| | +++|++||.|.|+|
T Consensus 490 dvl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~~~~l~~~d~a~v~~ 569 (611)
T 3izq_1 490 DLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEI 569 (611)
T ss_dssp CEEBCSTTCSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTCSCSSSSCCSEEEEE
T ss_pred EEccCCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccCccccCCCCEEEEEE
Confidence 68999987 8999999999999999999999999999999999999999986 3 45899999999999
Q ss_pred Ee---ccceEEeeeCC------eEEEEC-CceEEEEEEEecc
Q psy140 67 RF---IKHPEYLRAGQ------RMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 67 ~f---~~~Pv~le~g~------RFvLRd-grTIAvGvIt~V~ 98 (184)
+| . +|+|++.+. ||+||+ ++|||+|+|++|.
T Consensus 570 ~~~~~~-~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 570 ELIEVK-RWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp EESSCS-SCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred EECCCC-CceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 99 6 899999875 999999 9999999999985
No 11
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=2e-16 Score=141.45 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=87.2
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEecc------------ceeecCCCeEEEEEEe
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMS------------AECLRTGDKAAVHFRF 68 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~LD------------p~~L~pGd~A~V~~~f 68 (184)
||||++++++..+++|+|++++|+ +.+|..||+++||+||.++.|+|..++ +++|++||.+.|+|+|
T Consensus 320 ~~l~~~~~~~~~~~~f~a~~~~l~-~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~ 398 (434)
T 1zun_B 320 DLLVHADNVPQVSDAFDAMLVWMA-EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSL 398 (434)
T ss_dssp CEEEETTSCCCEEEEEEEEEEECC-SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEE
T ss_pred cEEECCCCCCCcccEEEEEEEEec-cccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEE
Confidence 689999988899999999999995 679999999999999999999999873 6799999999999999
Q ss_pred ccceEEeeeCC------eEEEEC---CceEEEEEEEe
Q psy140 69 IKHPEYLRAGQ------RMVFRE---GRTKAVGNVTK 96 (184)
Q Consensus 69 ~~~Pv~le~g~------RFvLRd---grTIAvGvIt~ 96 (184)
. +|+|++.|+ ||+||| ++|||+|+|+.
T Consensus 399 ~-~p~~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 399 D-APIALDGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp E-EEEECCCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred C-CeEEEcccccCCccceEEEEECCCCcEEEEEEEeC
Confidence 9 999999999 999997 79999999973
No 12
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.61 E-value=5.3e-15 Score=130.82 Aligned_cols=91 Identities=10% Similarity=0.126 Sum_probs=82.9
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCCcccccCCeeEEEEccceeeEEEEec--cce---eecCCCeEEEEEEeccceEEe
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM--SAE---CLRTGDKAAVHFRFIKHPEYL 75 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~~pI~~Gy~~vlH~gT~~~~arI~~L--Dp~---~L~pGd~A~V~~~f~~~Pv~l 75 (184)
||||+ .+ ..+++|+|+|++|+++.+|++||++++|++|++++|+|..+ |.+ .+++||.+.|+|+|. +|+|+
T Consensus 271 dvl~~--~~-~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l~~~-~pi~~ 346 (370)
T 2elf_A 271 FIISD--KE-IVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGN-KKLAY 346 (370)
T ss_dssp CEEES--CC-EEEEEEEEEEEECTTSCCBCTTCEEEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEEEEE-EEEEE
T ss_pred eEEEC--CC-ceeEEEEEEEEEECCCCCCCCCCEEEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEEEEC-cEEEE
Confidence 68888 45 99999999999999999999999999999999999999988 543 677999999999999 99999
Q ss_pred eeCCeEEEEC-C---ceEEEEEEE
Q psy140 76 RAGQRMVFRE-G---RTKAVGNVT 95 (184)
Q Consensus 76 e~g~RFvLRd-g---rTIAvGvIt 95 (184)
+.|+||+||+ + +|+|+|.|.
T Consensus 347 ~~~~rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 347 SKQDRFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp CTTSCEEEECTTSSSCEEEEEEEC
T ss_pred eCCCEEEEEECCCCCEEEEEEEeC
Confidence 9999999999 3 699999873
No 13
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.57 E-value=1.6e-15 Score=138.28 Aligned_cols=97 Identities=11% Similarity=0.189 Sum_probs=88.5
Q ss_pred CeE-ecCCCCCceeeEEEEEEEEccC-CcccccCCeeEEEEccceeeEEEEecc------------ceeecCCCeEEEEE
Q psy140 1 MVM-VSPALNPVAVWEFEGEILVLHH-PTTISSRYQAMVHCGSIRQTASILSMS------------AECLRTGDKAAVHF 66 (184)
Q Consensus 1 mVL-~~p~~p~~at~~F~AqI~VL~h-~~pI~~Gy~~vlH~gT~~~~arI~~LD------------p~~L~pGd~A~V~~ 66 (184)
||| ++++ ++..+++|+|+|++|++ +.+|..||++++|++|.+++|+|..++ +++|++||.+.|+|
T Consensus 278 dvl~~~~~-~~~~~~~~~a~v~~l~~~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l 356 (482)
T 1wb1_A 278 XILTSKDT-KLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAF 356 (482)
T ss_dssp CBCCCTTC-CCCCEEEEEECCCCCSSCCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEE
T ss_pred ceEecCCC-CCceeeEEEEEEEEeccCCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEE
Confidence 567 5664 57889999999999986 589999999999999999999998886 67899999999999
Q ss_pred EeccceEEeeeCCeEEEEC-------CceEEEEEEEeccC
Q psy140 67 RFIKHPEYLRAGQRMVFRE-------GRTKAVGNVTKVLP 99 (184)
Q Consensus 67 ~f~~~Pv~le~g~RFvLRd-------grTIAvGvIt~V~~ 99 (184)
+|. +|+|++.++||+||+ ++|+|+|+|+++.+
T Consensus 357 ~~~-~pv~~~~~~rfilr~~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 357 ELE-EKVLAEVGDRVLITRLDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp EEE-EEECCCSSCCCBEECTTSCTTSCCCCCBCCEEECCC
T ss_pred EcC-ccEEecCCCeEEEEECCCCccCceEeeEEEEEeccc
Confidence 999 999999999999999 79999999999865
No 14
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.56 E-value=1.5e-14 Score=145.07 Aligned_cols=99 Identities=28% Similarity=0.391 Sum_probs=90.8
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC-----CcccccCCeeEEEEccceeeEEEEecc-ceeecCCCeEEEEEEeccceEE
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH-----PTTISSRYQAMVHCGSIRQTASILSMS-AECLRTGDKAAVHFRFIKHPEY 74 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h-----~~pI~~Gy~~vlH~gT~~~~arI~~LD-p~~L~pGd~A~V~~~f~~~Pv~ 74 (184)
||||+++. +..+++|+|+|++|++ +++|..||++++|++|++++|+|...+ +++|++||.+.|+|+|. +|+|
T Consensus 575 dVL~~~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~L~~~~~~L~~Gd~a~V~L~l~-~Pi~ 652 (1289)
T 3avx_A 575 QVLAKPGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLI-HPIA 652 (1289)
T ss_dssp CEEESTTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEECCTTCCCBCTTCCCEEEEEEE-EEEE
T ss_pred cEEecCCC-CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEEECCCcccccCCCEEEEEEEEC-ceEE
Confidence 68999875 6889999999999975 468999999999999999999999544 67999999999999999 9999
Q ss_pred eeeCCeEEEEC-CceEEEEEEEeccCCC
Q psy140 75 LRAGQRMVFRE-GRTKAVGNVTKVLPPS 101 (184)
Q Consensus 75 le~g~RFvLRd-grTIAvGvIt~V~~~~ 101 (184)
++.|+||+||+ ++|||+|+|+++.+..
T Consensus 653 ve~g~RFiLRd~grTIG~G~V~~v~~~~ 680 (1289)
T 3avx_A 653 MDDGLRFAIREGGRTVGAGVVAKVLSGA 680 (1289)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEECCCC
T ss_pred EccCCEEEEEeCCeEEEEEEEeeechhh
Confidence 99999999999 7999999999998754
No 15
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.52 E-value=6.1e-14 Score=124.11 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=79.0
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCC---------cccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccc
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHP---------TTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKH 71 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~---------~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~ 71 (184)
||||++++++..+++|+|++++|++. .+|+.||++++|++|+++.|+|..++. | .++|+|. +
T Consensus 310 ~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~------~--~~~l~~~-~ 380 (410)
T 1kk1_A 310 NVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK------D--EIEVKLQ-I 380 (410)
T ss_dssp CEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET------T--EEEEEEE-E
T ss_pred eEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC------C--EEEEEeC-C
Confidence 79999988788899999999999885 899999999999999999999999753 3 7888999 9
Q ss_pred eEEeeeCCeEEEEC-----CceEEEEEEE
Q psy140 72 PEYLRAGQRMVFRE-----GRTKAVGNVT 95 (184)
Q Consensus 72 Pv~le~g~RFvLRd-----grTIAvGvIt 95 (184)
|+|++.|+||+||+ ++|||.|+|+
T Consensus 381 p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 381 PVCAEPGDRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp EEECCTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred cEEecCCCEEEEEEecCCCcEEEEEEEEc
Confidence 99999999999998 6999999997
No 16
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.52 E-value=6.5e-14 Score=124.05 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=78.8
Q ss_pred CeEecCCCCCceeeEEEEEEEEccCC---------cccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccc
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHHP---------TTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKH 71 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h~---------~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~ 71 (184)
||||++++++..+++|+|++++|++. .+|+.||++++|++|+++.|+|..++. | .++|+|. +
T Consensus 308 ~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~------~--~~~~~~~-~ 378 (408)
T 1s0u_A 308 SVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG------D--IADIKLK-L 378 (408)
T ss_dssp CEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET------T--EEEEEEE-E
T ss_pred eEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC------C--EEEEEEC-C
Confidence 79999988788899999999999985 899999999999999999999999753 3 7788999 9
Q ss_pred eEEeeeCCeEEEEC-----CceEEEEEEE
Q psy140 72 PEYLRAGQRMVFRE-----GRTKAVGNVT 95 (184)
Q Consensus 72 Pv~le~g~RFvLRd-----grTIAvGvIt 95 (184)
|+|++.|+||+||+ ++|||.|+|+
T Consensus 379 p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 379 PICAEIGDRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp EEECCTTCEEEEEEECSSSEEEEEEEEEC
T ss_pred cEEecCCCEEEEEEecCCCeEEEEEEEEc
Confidence 99999999999998 5899999996
No 17
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.43 E-value=1.1e-12 Score=116.04 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=77.7
Q ss_pred CeEecCCCCCceeeEEEEEEEEccC---------CcccccCCeeEEEEccceeeEEEEeccceeecCCCeEEEEEEeccc
Q psy140 1 MVMVSPALNPVAVWEFEGEILVLHH---------PTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIKH 71 (184)
Q Consensus 1 mVL~~p~~p~~at~~F~AqI~VL~h---------~~pI~~Gy~~vlH~gT~~~~arI~~LDp~~L~pGd~A~V~~~f~~~ 71 (184)
||||++++++..+++|+|+|++|++ +.+|..||+++||++|+++.|+|..++.+ .++|+|. +
T Consensus 302 ~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~~--------~~~~~l~-~ 372 (403)
T 3sjy_A 302 SIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKD--------EIEVELR-R 372 (403)
T ss_dssp CEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECSS--------EEEEEEE-E
T ss_pred cEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecCc--------eEEEEeC-C
Confidence 7999999888889999999999987 67999999999999999999999998543 5889999 9
Q ss_pred eEEeeeCC-eEEE-EC-C---ceEEEEEEE
Q psy140 72 PEYLRAGQ-RMVF-RE-G---RTKAVGNVT 95 (184)
Q Consensus 72 Pv~le~g~-RFvL-Rd-g---rTIAvGvIt 95 (184)
|+|++.|+ ||+| |+ + +.||.|.|+
T Consensus 373 p~~~~~g~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 373 PVAVWSNNIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp EEECCSSSCEEEEEEEETTEEEEEEEEEEE
T ss_pred cEeeccCCEEEEEEEEeCCcEEEEEEEEEE
Confidence 99999999 9997 76 3 899999985
No 18
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=25.24 E-value=3.3e+02 Score=23.47 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=26.3
Q ss_pred EEEEeccceEE-eeeCCeEEEEC-CceEEEEEEEecc
Q psy140 64 VHFRFIKHPEY-LRAGQRMVFRE-GRTKAVGNVTKVL 98 (184)
Q Consensus 64 V~~~f~~~Pv~-le~g~RFvLRd-grTIAvGvIt~V~ 98 (184)
+++.|+ +|.. +-+||-.+|=+ .+.+|.|+|.+..
T Consensus 341 ~~v~~~-~p~~~v~pGQ~~v~Y~~~~~lggg~i~~~~ 376 (380)
T 2der_A 341 IEVIFD-EPVAAVTPGQSAVFYNGEVCLGGGIIEQRL 376 (380)
T ss_dssp EEEEEE-EEESCCCTTSEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEC-CCCcCcCCCceEEEEeCCEEEEEEEEeccc
Confidence 556677 6654 67999999988 5899999998643
No 19
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=21.22 E-value=65 Score=24.89 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.0
Q ss_pred EEeccceeecCCCeEEEEEEec
Q psy140 48 ILSMSAECLRTGDKAAVHFRFI 69 (184)
Q Consensus 48 I~~LDp~~L~pGd~A~V~~~f~ 69 (184)
+..+|...|+||++|+|.+.+.
T Consensus 52 visiDk~vL~PGESA~it~IvK 73 (146)
T 2lv4_A 52 VMSIDKSVLSPGESATITTIVK 73 (146)
T ss_dssp EEECCCCCBCTTCEEEEEEECB
T ss_pred EEecCccccCCCcceEEEEEEE
Confidence 4445788999999999998775
Done!