RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy140
         (184 letters)



>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release
          factor ERF2, C-terminal domain {Fission yeast
          (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 68

 Score = 78.3 bits (193), Expect = 2e-20
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 12 AVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSAECLRTGDKAAVHFRFIK 70
          A   F  +I +L  P+ +++ Y  ++H  +  +  S   +  +  +T  K+     F  
Sbjct: 2  ATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFAT 60


>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
           C-terminal domain {Archaeon Sulfolobus solfataricus
           [TaxId: 2287]}
          Length = 107

 Score = 75.4 bits (185), Expect = 6e-19
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 20/105 (19%)

Query: 15  EFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMSA-ECLRTGDKAAVHFRFIKH-- 71
           EF   I+V+ HPT +++ Y  ++H  +      +  + +    RTG +A  + +F+K   
Sbjct: 3   EFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGD 62

Query: 72  -----------------PEYLRAGQRMVFREGRTKAVGNVTKVLP 99
                             E+   G+  +   G+T  VG +  V P
Sbjct: 63  VAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKP 107


>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow
          (Bos taurus), mitochondrial [TaxId: 9913]}
          Length = 103

 Score = 73.5 bits (180), Expect = 3e-18
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 15 EFEGEILVLHHP-----TTISSRYQAMVHCGSIRQTASILSM-SAECLRTGDKAAVHFRF 68
          + E ++ +L            S +  ++   +      I+     E    G+   +    
Sbjct: 3  KVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLIL 62

Query: 69 IKHPEYLRAGQRMVFREG-RTKAVGNVTKVLP 99
             P  L  GQR   R+G RT   G VT    
Sbjct: 63 R-QPMILEKGQRFTLRDGNRTIGTGLVTDTPA 93


>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu)
          {Thermus thermophilus [TaxId: 274]}
          Length = 93

 Score = 67.3 bits (164), Expect = 7e-16
 Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 15 EFEGEILVLHHP-----TTISSRYQAMVHCGSIRQTASILSM-SAECLRTGDKAAVHFRF 68
          +FE  + VL        T   S Y+   +  +   T  +      E +  GD        
Sbjct: 3  KFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVEL 62

Query: 69 IKHPEYLRAGQRMVFREG-RTKAVGNVTKVL 98
          I  P  L  G R   REG RT   G VTK+L
Sbjct: 63 I-KPVALEEGLRFAIREGGRTVGAGVVTKIL 92


>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha,
           C-terminal domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 107

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 20/103 (19%)

Query: 15  EFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSM--------------SAECLRTGD 60
            F   ++VL+HP  IS+ Y  ++ C +         +                + L++GD
Sbjct: 3   SFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGD 62

Query: 61  KAAVHFRFIK------HPEYLRAGQRMVFREGRTKAVGNVTKV 97
            A V F   K        EY   G+  V    +T AVG +  V
Sbjct: 63  AALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSV 105


>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
          {Thermus thermophilus [TaxId: 274]}
          Length = 344

 Score = 27.3 bits (60), Expect = 0.98
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 9/43 (20%)

Query: 57 RTGDKAAVHFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVLP 99
          R G     H R    PE+LR G  +VF         N +KV+P
Sbjct: 33 REGPFRVAHKRVRDLPEFLRPGDVLVF---------NESKVIP 66


>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
          {Thermotoga maritima [TaxId: 2336]}
          Length = 332

 Score = 26.5 bits (58), Expect = 2.3
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 9/35 (25%)

Query: 65 HFRFIKHPEYLRAGQRMVFREGRTKAVGNVTKVLP 99
          H  F +  EYL  G  +V          NV+KV+P
Sbjct: 37 HRIFREIIEYLEPGDLLVL---------NVSKVIP 62


>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal
          domain {Haemophilus influenzae [TaxId: 727]}
          Length = 61

 Score = 24.3 bits (53), Expect = 2.9
 Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 11/41 (26%)

Query: 12 AVWEFEGEILVLHHPTTISSRYQAMVHCGSIRQTASILSMS 52
           +  +E ++L                   S R+ A  L +S
Sbjct: 17 IIGFYEAQVL-----------KLFYAEYPSTRKLAQRLGVS 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 643,786
Number of extensions: 26788
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 12
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)