Query psy14002
Match_columns 454
No_of_seqs 146 out of 1637
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:02:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02121 Na_Pro_sym sodium/pr 100.0 1.1E-62 2.4E-67 518.2 36.2 417 5-442 2-433 (487)
2 PRK09442 panF sodium/panthothe 100.0 7E-62 1.5E-66 512.0 37.3 416 2-441 1-434 (483)
3 PRK15419 proline:sodium sympor 100.0 1.7E-61 3.7E-66 510.8 35.9 423 2-442 3-440 (502)
4 PRK12488 acetate permease; Pro 100.0 7.4E-61 1.6E-65 509.9 35.4 424 2-441 30-470 (549)
5 PRK09395 actP acetate permease 100.0 1.6E-60 3.4E-65 508.2 36.1 425 2-441 32-472 (551)
6 PRK10484 putative transporter; 100.0 3.7E-60 8E-65 502.9 35.6 422 5-443 2-446 (523)
7 TIGR02711 symport_actP cation/ 100.0 3.7E-60 8E-65 504.5 35.3 426 2-442 30-471 (549)
8 TIGR02119 panF sodium/pantothe 100.0 8.2E-60 1.8E-64 495.1 36.9 416 4-442 1-433 (471)
9 TIGR03648 Na_symport_lg probab 100.0 2.1E-58 4.6E-63 492.2 31.3 420 7-442 2-481 (552)
10 COG0591 PutP Na+/proline sympo 100.0 4.3E-57 9.2E-62 474.6 35.7 420 3-440 2-438 (493)
11 PF00474 SSF: Sodium:solute sy 100.0 2.8E-58 6E-63 475.0 16.3 387 36-437 1-404 (406)
12 COG4145 PanF Na+/panthothenate 100.0 7.2E-57 1.6E-61 433.6 24.6 408 8-438 5-428 (473)
13 TIGR00813 sss transporter, SSS 100.0 6.6E-56 1.4E-60 457.4 30.8 385 39-437 1-405 (407)
14 COG4147 DhlC Predicted symport 100.0 1E-54 2.2E-59 432.2 25.1 423 2-439 4-455 (529)
15 KOG3761|consensus 100.0 4E-50 8.6E-55 381.2 12.8 425 1-441 1-454 (591)
16 KOG2349|consensus 100.0 5.6E-49 1.2E-53 407.0 10.0 423 4-442 8-448 (585)
17 COG4146 Predicted symporter [G 100.0 2.9E-42 6.3E-47 332.0 16.8 378 10-405 6-409 (571)
18 KOG2348|consensus 99.9 2.4E-27 5.3E-32 233.8 11.3 412 12-438 20-462 (667)
19 COG3949 Uncharacterized membra 99.2 9.5E-10 2.1E-14 107.0 18.7 309 48-405 8-321 (349)
20 PF03222 Trp_Tyr_perm: Tryptop 98.8 5.7E-06 1.2E-10 85.2 27.9 343 45-419 5-358 (394)
21 TIGR00909 2A0306 amino acid tr 98.7 8.8E-06 1.9E-10 84.7 25.9 319 40-395 2-346 (429)
22 TIGR00814 stp serine transport 98.7 2.1E-05 4.5E-10 81.1 27.0 336 49-416 9-367 (397)
23 PRK00701 manganese transport p 98.6 1.5E-05 3.1E-10 83.3 25.7 280 54-365 45-338 (439)
24 PF01566 Nramp: Natural resist 98.6 1.9E-05 4.2E-10 80.3 24.6 265 67-368 6-287 (358)
25 PF03845 Spore_permease: Spore 98.5 0.00022 4.8E-09 71.4 27.9 140 43-190 2-142 (320)
26 TIGR00837 araaP aromatic amino 98.4 5.1E-05 1.1E-09 77.7 22.9 315 54-399 8-330 (381)
27 PRK10483 tryptophan permease; 98.4 0.00025 5.4E-09 73.1 27.6 346 44-425 12-372 (414)
28 TIGR01773 GABAperm gamma-amino 98.4 0.00046 1E-08 72.4 30.2 107 39-145 10-117 (452)
29 TIGR00912 2A0309 spore germina 98.4 0.00018 4E-09 73.0 26.3 141 42-190 2-144 (359)
30 TIGR01197 nramp NRAMP (natural 98.4 0.00022 4.7E-09 73.3 26.5 119 54-183 15-138 (390)
31 PRK15132 tyrosine transporter 98.4 0.00017 3.6E-09 74.5 25.4 329 46-407 6-341 (403)
32 PRK10238 aromatic amino acid t 98.4 0.00019 4.1E-09 75.5 26.5 296 39-361 10-310 (456)
33 PRK10249 phenylalanine transpo 98.4 0.00011 2.4E-09 77.3 24.4 295 40-360 20-318 (458)
34 TIGR00908 2A0305 ethanolamine 98.4 0.00044 9.5E-09 72.4 28.5 105 40-145 6-112 (442)
35 TIGR00905 2A0302 transporter, 98.4 0.0001 2.2E-09 77.9 23.8 290 40-360 6-308 (473)
36 PRK15049 L-asparagine permease 98.3 0.0011 2.3E-08 70.7 30.7 295 40-361 27-330 (499)
37 PRK10655 potE putrescine trans 98.3 0.00038 8.1E-09 72.8 26.5 284 40-359 5-297 (438)
38 PRK10644 arginine:agmatin anti 98.3 0.00059 1.3E-08 71.5 27.4 89 39-128 6-95 (445)
39 PRK11017 codB cytosine permeas 98.3 0.00038 8.3E-09 72.0 25.5 169 104-299 71-239 (404)
40 PRK11387 S-methylmethionine tr 98.3 0.002 4.4E-08 68.0 31.2 295 40-360 13-315 (471)
41 PRK10435 cadB lysine/cadaverin 98.3 0.00052 1.1E-08 71.7 26.5 290 40-364 4-303 (435)
42 PRK11021 putative transporter; 98.3 0.00096 2.1E-08 69.1 28.2 284 43-360 1-286 (410)
43 COG1113 AnsP Gamma-aminobutyra 98.3 0.00021 4.5E-09 73.3 22.1 340 40-409 12-370 (462)
44 PRK09664 tryptophan permease T 98.2 0.0019 4.1E-08 66.6 28.4 338 48-420 14-368 (415)
45 PF05525 Branch_AA_trans: Bran 98.2 0.00012 2.6E-09 75.6 19.3 319 44-402 4-336 (427)
46 PRK11049 D-alanine/D-serine/gl 98.2 0.0045 9.7E-08 65.4 31.8 296 39-361 18-321 (469)
47 PRK13629 threonine/serine tran 98.2 0.0014 3E-08 67.9 26.3 341 49-415 25-402 (443)
48 TIGR03810 arg_ornith_anti argi 98.2 0.0011 2.3E-08 70.1 26.3 297 41-361 1-305 (468)
49 PRK10580 proY putative proline 98.2 0.003 6.5E-08 66.4 29.4 298 40-364 8-315 (457)
50 TIGR00800 ncs1 NCS1 nucleoside 98.1 0.00096 2.1E-08 69.9 23.9 88 99-190 72-169 (442)
51 COG1914 MntH Mn2+ and Fe2+ tra 98.1 0.0022 4.7E-08 66.2 25.8 120 54-181 28-147 (416)
52 TIGR00906 2A0303 cationic amin 98.1 0.0022 4.7E-08 69.3 26.8 331 40-396 27-382 (557)
53 TIGR00913 2A0310 amino acid pe 98.1 0.0044 9.6E-08 65.5 28.5 303 41-360 2-315 (478)
54 PRK10746 putative transport pr 98.1 0.0036 7.8E-08 66.0 27.5 293 40-360 9-309 (461)
55 PF13520 AA_permease_2: Amino 98.0 0.003 6.5E-08 65.5 26.3 292 44-361 2-299 (426)
56 TIGR00796 livcs branched-chain 98.0 0.0005 1.1E-08 70.3 19.3 312 50-403 2-331 (378)
57 PRK10836 lysine transporter; P 98.0 0.017 3.7E-07 61.3 31.0 312 32-364 7-329 (489)
58 PRK10197 gamma-aminobutyrate t 98.0 0.011 2.4E-07 62.0 29.2 283 54-361 5-292 (446)
59 PRK11357 frlA putative fructos 98.0 0.012 2.6E-07 61.6 29.5 324 40-395 7-348 (445)
60 PRK11375 allantoin permease; P 98.0 0.0052 1.1E-07 65.2 26.4 103 40-145 24-131 (484)
61 TIGR02358 thia_cytX probable h 97.9 0.0047 1E-07 63.6 24.2 111 81-199 37-148 (386)
62 PRK15433 branched-chain amino 97.9 0.0014 2.9E-08 67.9 19.7 321 45-402 10-339 (439)
63 COG0814 SdaC Amino acid permea 97.7 0.071 1.5E-06 55.4 29.7 123 48-172 14-142 (415)
64 COG1457 CodB Purine-cytosine p 97.7 0.017 3.8E-07 59.8 24.3 129 49-190 31-159 (442)
65 PF01235 Na_Ala_symp: Sodium:a 97.7 0.015 3.3E-07 59.9 23.5 150 40-199 16-175 (416)
66 TIGR00911 2A0308 L-type amino 97.6 0.033 7.1E-07 59.3 26.2 86 40-126 41-130 (501)
67 TIGR00835 agcS amino acid carr 97.3 0.27 5.8E-06 51.1 28.0 148 41-199 45-202 (425)
68 PF02028 BCCT: BCCT family tra 97.3 0.037 7.9E-07 58.5 20.9 292 85-394 141-450 (485)
69 COG1114 BrnQ Branched-chain am 97.3 0.14 3E-06 52.4 23.7 319 44-402 6-338 (431)
70 TIGR00930 2a30 K-Cl cotranspor 97.3 0.12 2.7E-06 59.1 26.1 106 39-145 74-184 (953)
71 TIGR03428 ureacarb_perm permea 97.2 0.34 7.3E-06 51.3 27.5 101 40-140 12-114 (475)
72 PTZ00206 amino acid transporte 97.1 0.28 6.1E-06 51.8 25.0 98 46-145 63-162 (467)
73 PRK09950 putative transporter; 97.0 0.036 7.8E-07 58.7 17.9 270 98-394 161-463 (506)
74 TIGR00907 2A0304 amino acid pe 97.0 0.38 8.3E-06 50.9 25.6 46 321-366 290-339 (482)
75 PRK09928 choline transport pro 96.9 0.16 3.5E-06 55.4 21.6 126 259-393 338-469 (679)
76 TIGR00842 bcct choline/carniti 96.8 0.084 1.8E-06 55.2 17.7 129 259-395 284-418 (453)
77 COG0833 LysP Amino acid transp 96.8 0.29 6.2E-06 51.8 21.4 338 40-402 43-402 (541)
78 COG1115 AlsT Na+/alanine sympo 96.7 1 2.2E-05 46.7 24.9 151 38-199 58-219 (452)
79 PRK03356 L-carnitine/gamma-but 96.7 0.12 2.7E-06 54.7 18.2 130 259-394 333-466 (504)
80 COG0531 PotE Amino acid transp 96.6 1.1 2.5E-05 46.6 28.4 292 40-360 11-312 (466)
81 PF02133 Transp_cyt_pur: Perme 96.6 0.13 2.8E-06 53.8 18.0 104 81-190 50-166 (440)
82 COG1292 BetT Choline-glycine b 96.6 0.4 8.7E-06 50.6 20.7 249 98-364 164-437 (537)
83 TIGR03813 put_Glu_GABA_T putat 96.5 1.5 3.2E-05 46.4 25.1 92 43-138 3-96 (474)
84 TIGR00910 2A0307_GadC glutamat 96.4 1.6 3.5E-05 46.6 25.2 83 41-127 4-89 (507)
85 KOG1303|consensus 96.1 1.1 2.5E-05 46.7 21.2 324 39-405 34-380 (437)
86 PF00324 AA_permease: Amino ac 96.0 0.046 9.9E-07 57.8 11.0 294 54-368 8-325 (478)
87 PLN03074 auxin influx permease 96.0 1.3 2.9E-05 46.8 21.8 131 52-190 55-200 (473)
88 COG1953 FUI1 Cytosine/uracil/t 95.9 2.9 6.4E-05 44.0 23.4 317 39-392 37-376 (497)
89 KOG1287|consensus 95.5 0.94 2E-05 47.6 17.7 332 40-407 11-367 (479)
90 PF01490 Aa_trans: Transmembra 95.5 0.0024 5.2E-08 65.7 -1.4 145 42-190 2-154 (409)
91 COG0733 Na+-dependent transpor 94.7 6.4 0.00014 40.9 25.3 45 321-365 290-335 (439)
92 KOG1286|consensus 94.6 0.76 1.6E-05 49.5 14.5 328 40-396 29-388 (554)
93 PRK15238 inner membrane transp 94.2 9.2 0.0002 40.6 27.3 87 40-129 6-95 (496)
94 PF02554 CstA: Carbon starvati 89.5 27 0.00058 35.6 20.5 94 32-130 45-140 (376)
95 COG0591 PutP Na+/proline sympo 86.1 4.4 9.5E-05 43.2 9.7 123 241-368 239-364 (493)
96 KOG1289|consensus 80.5 88 0.0019 33.6 17.9 163 259-430 273-447 (550)
97 KOG1304|consensus 80.3 25 0.00053 36.9 12.1 79 111-199 131-216 (449)
98 COG1966 CstA Carbon starvation 64.8 89 0.0019 33.6 11.8 95 32-131 45-141 (575)
99 PF05545 FixQ: Cbb3-type cytoc 61.1 8.7 0.00019 27.0 2.6 32 4-35 9-40 (49)
100 KOG1291|consensus 50.5 3.3E+02 0.0072 28.8 16.7 75 91-170 73-150 (503)
101 PRK15015 carbon starvation pro 50.3 2.2E+02 0.0047 31.5 12.0 92 32-128 76-169 (701)
102 PRK01741 cell division protein 46.6 16 0.00035 36.4 2.7 29 2-30 3-31 (332)
103 cd01324 cbb3_Oxidase_CcoQ Cyto 40.3 32 0.00069 24.2 2.7 25 5-29 11-35 (48)
104 KOG1305|consensus 37.7 4.9E+02 0.011 27.1 16.9 85 44-129 7-92 (411)
105 PF12273 RCR: Chitin synthesis 36.7 29 0.00062 29.8 2.5 26 4-29 2-28 (130)
106 PF14150 YesK: YesK-like prote 28.6 2.5E+02 0.0054 22.2 6.2 44 9-58 4-47 (81)
107 PF03845 Spore_permease: Spore 25.5 6.5E+02 0.014 24.7 10.5 80 317-402 59-138 (320)
108 PF00003 7tm_3: 7 transmembran 24.9 2.6E+02 0.0057 26.0 7.2 89 5-100 149-237 (238)
109 PF11120 DUF2636: Protein of u 23.3 1.1E+02 0.0023 22.9 3.1 26 2-27 1-27 (62)
110 PF00209 SNF: Sodium:neurotran 23.1 9.3E+02 0.02 25.7 11.8 44 321-364 333-377 (523)
111 COG3763 Uncharacterized protei 21.1 1.2E+02 0.0027 23.1 3.1 26 3-28 3-28 (71)
112 PRK15433 branched-chain amino 20.7 1.4E+02 0.0031 31.3 4.6 62 106-172 267-328 (439)
No 1
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=100.00 E-value=1.1e-62 Score=518.20 Aligned_cols=417 Identities=17% Similarity=0.176 Sum_probs=349.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHH
Q psy14002 5 YGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYS 84 (454)
Q Consensus 5 ~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~ 84 (454)
++++++++|+++++++|+|.+||.| |.|||++|||++|+|..++|+.||++|+++++|.++.+|++|+++.|+.+++.
T Consensus 2 ~~~~~~~~y~~~~l~iG~~~~r~~~--s~~df~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~ 79 (487)
T TIGR02121 2 EILITFGVYLIIMLLIGFYAYKKTT--NLSDYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLT 79 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccC--chHHHeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHH
Confidence 4677889999999999999999988 89999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHhhhhh-----ccCccCchHHHHHhhcCcc---hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCC
Q psy14002 85 LALVVGALLFVKPMR-----EASYVTMLDPFQQAYGNRI---GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAI 156 (454)
Q Consensus 85 l~~~~~~~~~~~~~r-----~~~~~T~~d~l~~Ryg~~~---~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi 156 (454)
++.++..++++||+| |.|..|++|++|+|||++. +.+.++..++..+.|++.|+.+.++++ +.++|+
T Consensus 80 ~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l-----~~~~gi 154 (487)
T TIGR02121 80 IGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLF-----ESTFGL 154 (487)
T ss_pred HHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCc
Confidence 887777888999998 6789999999999999764 445566666677789999999999999 999999
Q ss_pred CchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhh-cCccCCCC
Q psy14002 157 SNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFS-KVDWLGTV 235 (454)
Q Consensus 157 ~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~-~~~~~~~~ 235 (454)
|++.++++..+++++| |..||+|++++||++|++ +++++ .++ ++....++.||++++.+++++ +++..+..
T Consensus 155 ~~~~~iii~~~i~~~Y--t~~GGl~av~~TD~iQ~~--i~~~~-~~~---v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~ 226 (487)
T TIGR02121 155 DYKTGLLIGALIIVIY--TFFGGFLAVSWTDFVQGL--LMFFA-LVL---VPIVALFNLGGFGETLSAVAAINPHLLDMF 226 (487)
T ss_pred cHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHH--HHHHH-HHH---HHHHHHHHcCCHHHHHHHHHhhCccccCCC
Confidence 9999999999999999 999999999999999964 67776 433 233334556899998887765 23333322
Q ss_pred CCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCc
Q psy14002 236 ETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTA 315 (454)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~ 315 (454)
++.....+.+ .+.+.++...+|+++||++++||+|++||+..++..+..+..+...++|+.+..++|+. ++ .+.
T Consensus 227 ~~~~~~~~~~-~~~~~~g~~~~p~~~qR~~aaks~k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~----p~-~~~ 300 (487)
T TIGR02121 227 KGASVIAIIS-LLAWGLGYFGQPHIIVRFMAIRSHKELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKN----PH-VEL 300 (487)
T ss_pred CCCCHHHHHH-HHHHHHHhccchHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----cc-ccC
Confidence 3222222333 24456677889999999999999999999999887766665566667788887766541 10 123
Q ss_pred cCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHHHHHHH
Q psy14002 316 AESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGLGAVTA 389 (454)
Q Consensus 316 ~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i~i~a~ 389 (454)
.++|.++|.++++.+|||+.|+++++++||.|||+||.+++.|+.++||+|++++|||.+|| |+.+++++++++
T Consensus 301 ~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~Diy~~~~~~~~s~~~~l~v~R~~~v~~~~~~~ 380 (487)
T TIGR02121 301 VDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSALTEDFYKAFFKREASQKELVMVGRLSVLVIAIIAI 380 (487)
T ss_pred CCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999988 999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhhc
Q psy14002 390 AVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQM 442 (454)
Q Consensus 390 ~la~~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~~ 442 (454)
.+++..+++++++..+++....+...|+.+.+.+|||.|.++.+.|...+...
T Consensus 381 ~~a~~~~~~i~~l~~~~~~~~~~~~~p~~llgl~w~r~t~~ga~~g~i~G~~~ 433 (487)
T TIGR02121 381 ILAMNPNSSILNLVGYAWAGFGAAFGPVVLFSLYWKRMTRNGALAGMIIGAVT 433 (487)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99998887888887777766555566667799999999999999888776554
No 2
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=100.00 E-value=7e-62 Score=511.97 Aligned_cols=416 Identities=19% Similarity=0.163 Sum_probs=345.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCCC-CcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHH
Q psy14002 2 VDVYGLAGIIIFYTLVLAIGVWAGTKQKNH-GEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVP 80 (454)
Q Consensus 2 ~~~~~~~i~~~y~~~~l~ig~~~~r~~~~~-~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~ 80 (454)
||+.+++++++|+++++++|+|.+||+|++ +.|||++|||++|+|+.++|+.||++|+++++|.+|.+|++|+++.|..
T Consensus 1 ~~~~~~~~i~~y~~~~~~ig~~~~r~~~~~~~~~dy~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~ 80 (483)
T PRK09442 1 MNLEVILPLVIYLVLVFGISVYAYRKRQAGDFLNEYFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLA 80 (483)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcccCCCcccceeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHH
Confidence 488899999999999999999999987742 4699999999999999999999999999999999999999999876654
Q ss_pred HHHHHHHHHHHHHHhhhh----hccCccCchHHHHHhhcCcc-hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC
Q psy14002 81 LGYSLALVVGALLFVKPM----REASYVTMLDPFQQAYGNRI-GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA 155 (454)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~----r~~~~~T~~d~l~~Ryg~~~-~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g 155 (454)
........+...+++|++ ||.|..|++|++|+|||++. +.+.++..++..+++++.|+.+.|+++ +.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l-----~~~~g 155 (483)
T PRK09442 81 MIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLL-----ETATG 155 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhC
Confidence 332222222233455554 99999999999999999886 667777778888899999999999999 99999
Q ss_pred CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhh-cCccCCC
Q psy14002 156 ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFS-KVDWLGT 234 (454)
Q Consensus 156 i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~-~~~~~~~ 234 (454)
+|++.++++..+++++| |.+||+|++++||.+|+ ++++++ .+++ .+. ..+..||++++.+++++ ++++.+.
T Consensus 156 i~~~~~iii~~~iv~iY--t~~GGl~av~~TD~iQ~--~i~~~~-~~vi--~~~-~~~~~gG~~~~~~~l~~~~~~~~~~ 227 (483)
T PRK09442 156 ISYETGLLIFGITVALY--TAFGGFRAVVLTDALQG--IVMLVG-TVIL--LIG-VIHAGGGLENAVQTLQAIDPQLVTP 227 (483)
T ss_pred CCHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHH--HHHHHH-HHHH--HHH-HHHhCCCHHHHHHHHHhcCccccCC
Confidence 99999999999999999 99999999999999995 477777 4432 222 34456899998888776 3333322
Q ss_pred CCCCc---hhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC
Q psy14002 235 VETKD---YGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGK 311 (454)
Q Consensus 235 ~~~~~---~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~ 311 (454)
.++.+ ...+.+.++...++..+.|+++||++++||+|++||+.++++++..++.+++.++|+.++..+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~------- 300 (483)
T PRK09442 228 QGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDSKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD------- 300 (483)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------
Confidence 22221 22334444556677788999999999999999999999999998888888889999999988876
Q ss_pred ccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCC--CCCC------eehhHH
Q psy14002 312 NFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK--LTPN------WVAFFG 383 (454)
Q Consensus 312 ~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~--~s~~------Ri~~~~ 383 (454)
..++|.++|.++.+.+|+|+.++++++++||+|||+||.+++.+++++||+|++ ++|+ .+|| |+.+++
T Consensus 301 ---~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~~~~Di~~~-~~~~~~~s~~~~~~v~r~~~~~ 376 (483)
T PRK09442 301 ---LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSSTIIKDLYLN-IRPDQIANEKKLKRISLIITLI 376 (483)
T ss_pred ---CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCChHHHHHHHHHHHHH
Confidence 246889999999999999999999999999999999999999999999999999 6777 6777 899999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhh
Q psy14002 384 LGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQ 441 (454)
Q Consensus 384 i~i~a~~la~~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~ 441 (454)
++++++.+|+..++.+..+..+++....++.++|.+.+.+|||.|.++.+.|...+..
T Consensus 377 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~lgl~w~r~~~~ga~~~~i~G~~ 434 (483)
T PRK09442 377 LGLLVLLAALKPPDMIIWLNLFAFGGLEAVFLWPIVLGLYWERANATGALASMIVGLV 434 (483)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 9999999999888444555555555556678999999999999999999888766554
No 3
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=100.00 E-value=1.7e-61 Score=510.77 Aligned_cols=423 Identities=17% Similarity=0.149 Sum_probs=339.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHH
Q psy14002 2 VDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPL 81 (454)
Q Consensus 2 ~~~~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~ 81 (454)
.|..+++++++|+++++++|+|.+||+| |.|||++|||++|+|++++|+.||++|+++++|.|+.+|++|+++.|+.+
T Consensus 3 ~~~~~~~~~~~y~~~~l~iG~~~~r~~~--s~~dy~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~ 80 (502)
T PRK15419 3 ISTPMLVTFCVYIFGMILIGFIAWRSTK--NFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAI 80 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCC--ChhHheeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHH
Confidence 5778889999999999999999999887 89999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHhhhhh-----ccCccCchHHHHHhhcCcc---hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccc
Q psy14002 82 GYSLALVVGALLFVKPMR-----EASYVTMLDPFQQAYGNRI---GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFP 153 (454)
Q Consensus 82 ~~~l~~~~~~~~~~~~~r-----~~~~~T~~d~l~~Ryg~~~---~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~ 153 (454)
++.++.++...+++||+| |.|..|+||++|+|||++. |.+.++..++..++|++.|+++.+.++ +.+
T Consensus 81 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l-----~~~ 155 (502)
T PRK15419 81 GLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLF-----EST 155 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 888887766667777765 5699999999999999864 445666677778889999999999999 999
Q ss_pred cCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcC-ccC
Q psy14002 154 FAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKV-DWL 232 (454)
Q Consensus 154 ~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~-~~~ 232 (454)
+|+|++.++++..+++++| |.+||+|+|+|||++|++ +|+++ .++ ++.....+.||++++.+.+.+.+ +..
T Consensus 156 ~gi~~~~~iii~~~iv~iY--t~~GGl~aV~~TD~iQ~~--imi~g-~i~---~~~~~~~~~GG~~~~~~~~~~~~~~~~ 227 (502)
T PRK15419 156 FGMSYETALWAGAAATILY--TFIGGFLAVSWTDTVQAS--LMIFA-LIL---TPVIVIISVGGFGDSLEVIKQKSIENV 227 (502)
T ss_pred hCCCHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHH--HHHHH-HHH---HHHHHHHHcCCHHHHHHHHHhcCcccc
Confidence 9999999999999999999 999999999999999964 67776 433 23333444689998888765522 222
Q ss_pred CCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCc
Q psy14002 233 GTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKN 312 (454)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~ 312 (454)
+..++.+...+.+ .+.+.++...+||++||++++||+|+.|++.........+......++|+.++.++|+. ++.. +
T Consensus 228 ~~~~~~~~~~~~~-~~~~~~g~~~~p~~~qR~~aak~~~~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~-p~~~-~ 304 (502)
T PRK15419 228 DMLKGLNFVAIIS-LMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEH-PAVA-G 304 (502)
T ss_pred CcccCCCHHHHHH-HHHHHHHHcCChHHHHhheecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cccc-c
Confidence 2112222222333 23456777889999999999999997655544333333333344556777777766541 1000 0
Q ss_pred cCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHHHH
Q psy14002 313 FTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGLGA 386 (454)
Q Consensus 313 ~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i~i 386 (454)
....|+|.++|.++.+.+|+|+.|+++++++||.|||+||.+++.|+.++||+|+++.|||.+|| |+.++++++
T Consensus 305 ~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~~~~Diy~~~~~~~~s~~~~l~~~Ri~~v~~~~ 384 (502)
T PRK15419 305 AVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVAL 384 (502)
T ss_pred ccCCCcchHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Confidence 01246899999999999999999999999999999999999999999999999999999998887 899999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhhc
Q psy14002 387 VTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQM 442 (454)
Q Consensus 387 ~a~~la~~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~~ 442 (454)
+++.++...++++.++...++....+...|+++.+++|||.|.++.+.|...+...
T Consensus 385 ~a~~~a~~~~~~i~~l~~~~~~~~~~~~~p~~llgl~wkr~t~~ga~~g~i~G~~~ 440 (502)
T PRK15419 385 VAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALT 440 (502)
T ss_pred HHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999998876788887777766544445556689999999999999888776654
No 4
>PRK12488 acetate permease; Provisional
Probab=100.00 E-value=7.4e-61 Score=509.88 Aligned_cols=424 Identities=12% Similarity=0.093 Sum_probs=352.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHH
Q psy14002 2 VDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPL 81 (454)
Q Consensus 2 ~~~~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~ 81 (454)
+|+.++.++++|+++++++|+|.+||+| |.|||++|||++|+|.+++++.||++|+.+++|.++.+|++|+++.|+.+
T Consensus 30 ~~~~~i~i~~~y~~~~l~ig~~~~r~~~--s~~df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~ 107 (549)
T PRK12488 30 LNWTAIGMFMVFVLFTLGITRWAARRTR--SASDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYAL 107 (549)
T ss_pred ccHHHHHHHHHHHHHHHHHHhheeeccC--ChHHHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 5777888889999999999999999887 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCc-chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchh
Q psy14002 82 GYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNR-IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQ 160 (454)
Q Consensus 82 ~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~-~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~ 160 (454)
++.++.++..++++||+||.+..|+||++++|||++ .|.+.++..++..++|+..|+.+.|.++ +.++|+|++.
T Consensus 108 g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il-----~~l~gi~~~~ 182 (549)
T PRK12488 108 GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLI-----ELLFGISYLY 182 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCHHH
Confidence 998898888888999999999999999999999976 6999999999999999999999999999 9999999999
Q ss_pred hhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCC-CcchhHhhhhhcC---ccCCCCC
Q psy14002 161 PYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQP-YLKEPNMTIFSKV---DWLGTVE 236 (454)
Q Consensus 161 ~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~g-g~~~l~~~~~~~~---~~~~~~~ 236 (454)
++++.++++++| |..||||+++|||++|++ +|+++ .+++ ..+. ..+.| |++++.++.++.. +....++
T Consensus 183 ~iii~~~i~~~Y--t~~GGm~av~~td~iQ~~--im~~~-~i~~--~~~~-l~~~g~g~~~~~~~~~~~~~~~~~~~~p~ 254 (549)
T PRK12488 183 AVVIVGALMVLY--VTFGGMLATTWVQIIKAV--LLLSG-TSFM--AFMV-LKHFGFSTEAMFASAVAVHAKGQAILAPG 254 (549)
T ss_pred HHHHHHHHHHHH--HhccchhHHHHHHHHHHH--HHHHH-HHHH--HHHH-HHHhCCCHHHHHHHHHhccccchhhcCCc
Confidence 999999999999 999999999999999964 77777 4332 3333 33344 6777776654311 1110111
Q ss_pred C--CchhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC--c
Q psy14002 237 T--KDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGK--N 312 (454)
Q Consensus 237 ~--~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~--~ 312 (454)
. .....+.+..+...++...+||++||++++||+|++||+..++..+..++.+...++|+.++.++|+. +.... +
T Consensus 255 ~~~~~~~~~~~~~l~~~lg~~~~p~~~qR~~aaks~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~l~~~~-~~~~~~~~ 333 (549)
T PRK12488 255 GLLSNPIDAISLGLGMMFGTAGLPHILMRFFTVSDAREARKSVLYATGFIGYFYLLIIVVGFGAIVMVGTE-PSYRDAGG 333 (549)
T ss_pred ccccCHHHHHHHHHHHHHHhccCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chhccccc
Confidence 1 12223445555666788889999999999999999999999998776666677788999999988642 11100 0
Q ss_pred cCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCC-CCCCC------eehhHHHH
Q psy14002 313 FTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRP-KLTPN------WVAFFGLG 385 (454)
Q Consensus 313 ~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~-~~s~~------Ri~~~~i~ 385 (454)
....++|.+.|.+....+|+++.|++.++++||+|||.||.+++.|+.++||+|++++|| +.+|| |+.+++++
T Consensus 334 ~~~~~~~~~~~~l~~~~~~~~l~GlvaA~~~AA~mST~ss~lls~st~is~Diy~~~~~~~~~s~~~~l~v~Ri~~vvvg 413 (549)
T PRK12488 334 KIIGGGNMVAVHLAQAVGGNLFLGFISAVAFATILAVVAGLALSGASAVSHDLYACVIRKGQASEAQEMRVSKIATLGIG 413 (549)
T ss_pred ccCCCcchhHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHhhHHHHHHHHHHH
Confidence 011245788898888899999999999999999999999999999999999999998754 67776 99999999
Q ss_pred HHHHHHHhcCC-chHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhh
Q psy14002 386 AVTAAVMSSAD-AGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQ 441 (454)
Q Consensus 386 i~a~~la~~~~-~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~ 441 (454)
++++.+++..+ .++..+....+....+.++||++.+.+|||.|.+|.+.|...+..
T Consensus 414 v~a~~~a~~~~~~~i~~l~~~~~~~~a~~~~p~lllgl~wkr~t~~ga~ag~i~G~~ 470 (549)
T PRK12488 414 LLAVVLGLMFESQNIAFLSGLVLAIAASVNFPVLFLSMFWKGLTTRGAVAGSYAGLV 470 (549)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999998643 467777777777777788899999999999999999888766544
No 5
>PRK09395 actP acetate permease; Provisional
Probab=100.00 E-value=1.6e-60 Score=508.19 Aligned_cols=425 Identities=13% Similarity=0.099 Sum_probs=352.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHH
Q psy14002 2 VDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPL 81 (454)
Q Consensus 2 ~~~~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~ 81 (454)
+|+.++.++++|+++++++|+|.+||+| |.|||++|||++|+|++++++.||++|+.+++|.++.+|++|+++.|+.+
T Consensus 32 ~~~~~~~i~~~y~~~~l~iG~~~~r~~~--s~~df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~ 109 (551)
T PRK09395 32 TNWQAIIMFLIFVVFTLGITYWAAKRTR--SASDFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSI 109 (551)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhcccC--CHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHH
Confidence 4778889999999999999999999887 89999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCc-chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchh
Q psy14002 82 GYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNR-IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQ 160 (454)
Q Consensus 82 ~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~-~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~ 160 (454)
++.++.++..++++||+||.+..|+||++++|||++ .|.+.++..++..+.|+..|+.+.|.++ +.++|+|++.
T Consensus 110 ~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il-----~~~~gi~~~~ 184 (551)
T PRK09395 110 GFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLI-----QLLFGLNYHV 184 (551)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCHHH
Confidence 999998888888999999999999999999999976 6889999999999999999999999999 9999999999
Q ss_pred hhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhh-cCccCCCCCCC-
Q psy14002 161 PYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFS-KVDWLGTVETK- 238 (454)
Q Consensus 161 ~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~-~~~~~~~~~~~- 238 (454)
++++..+++++| |..||+|+++|||++|++ +|+++ .+++ .+....+..||++++.+++.+ +++....+++.
T Consensus 185 ~ili~~~i~~iY--t~~GGm~av~~TD~iQ~i--im~~g-~ii~--~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~ 257 (551)
T PRK09395 185 AVVLVGVLMMVY--VLFGGMLATTWVQIIKAV--LLLSG-ATFM--AFMVMKHVGFSFENLFSEAVAVHPKGLAIMGPGG 257 (551)
T ss_pred HHHHHHHHHHHH--HhhcchHHHHHHHHHHHH--HHHHH-HHHH--HHHHHHHhCCCHHHHHHHHHhhCcccccccCCCc
Confidence 999999999999 999999999999999964 77777 4433 333333333478888777654 22221112221
Q ss_pred ---chhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccC-
Q psy14002 239 ---DYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFT- 314 (454)
Q Consensus 239 ---~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~- 314 (454)
....+++..+...++...+||++||++++||+|++||+..+++.+..++.+...++|+.++.++|+. ++...+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~k~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~~~~-p~~~~~~~~ 336 (551)
T PRK09395 258 LVKDPISALSLGLALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAIVLVGTN-PEFKDAAGA 336 (551)
T ss_pred cccchHHHHHHHHHHHHHhhcccHHHHhhhccCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ccccccccc
Confidence 1222334444566778889999999999999999999999998777666677788999999887531 11110000
Q ss_pred -ccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCC-CCCCC------eehhHHHHH
Q psy14002 315 -AAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRP-KLTPN------WVAFFGLGA 386 (454)
Q Consensus 315 -~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~-~~s~~------Ri~~~~i~i 386 (454)
..+++.+.+.+.....|+++.+++.++++||.|||.||.+++.|+.+++|+|++++|| +.+|| |+.++++++
T Consensus 337 ~~~~~~~~~~~l~~~l~~~~l~glv~A~~lAA~mST~ss~lla~st~~~~Diy~~~~~~~~~s~~~~l~v~Ri~~v~igi 416 (551)
T PRK09395 337 LIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVIKKGKATERDELRVSKITTLVLGV 416 (551)
T ss_pred cCCCcccHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhhhhHHHHHHHHHHH
Confidence 0234666777777888999999999999999999999999999999999999998765 57776 899999999
Q ss_pred HHHHHHhcC-CchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhh
Q psy14002 387 VTAAVMSSA-DAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQ 441 (454)
Q Consensus 387 ~a~~la~~~-~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~ 441 (454)
+++.+|... ++++..++..+++...+..+||.+.+.+|||.|.+|.+.|...+..
T Consensus 417 ~a~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~lllglfwkr~~~~gA~ag~i~G~~ 472 (551)
T PRK09395 417 VAIILGILFEKQNIAFMVGLAFAIAASANFPVLLLSMYWKGLTTRGAVIGGWLGLI 472 (551)
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 999999853 4467777777777777788899999999999999999988776644
No 6
>PRK10484 putative transporter; Provisional
Probab=100.00 E-value=3.7e-60 Score=502.91 Aligned_cols=422 Identities=16% Similarity=0.132 Sum_probs=331.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHH
Q psy14002 5 YGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYS 84 (454)
Q Consensus 5 ~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~ 84 (454)
.|+.++++|.+++.++|++.+||+|.+|.|||++|||++|+|++++|+.||++|+++++|.+|.+|++|+++.++.+++.
T Consensus 2 ~~i~~~~~~~~~~~~ig~~~~r~~~~~s~~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~ 81 (523)
T PRK10484 2 LTILSFLGFTLLVAVISWWKTRKTDTSSSDGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAA 81 (523)
T ss_pred hhhHHHHHHHHHHHHHHHHHHccCCCCCchhheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHH
Confidence 46788999999999999999887743389999999999999999999999999999999999999999998876667777
Q ss_pred HHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHHHHH-HHHHHHHHhhhHhhhc-cccccccCCCchhhh
Q psy14002 85 LALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDV-FWIASVLSSLGSVVDT-LCLSFPFAISNAQPY 162 (454)
Q Consensus 85 l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~-~~~~~ql~~~g~i~~~-~~~~~~~gi~~~~~i 162 (454)
++.++.+++++||+||.|..|+||++|+|||++.+.+.+.+.++..+ .++..++++.+..++. +..+.++|+|++.++
T Consensus 82 ~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~ 161 (523)
T PRK10484 82 IALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAI 161 (523)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHH
Confidence 88777888999999999999999999999999988777666555444 4577777777766632 112446899998877
Q ss_pred hhh----hhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCC--CcchhHhhhhh-cCccCCCC
Q psy14002 163 LKE----PNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQP--YLKEPNMTIFS-KVDWLGTV 235 (454)
Q Consensus 163 ~i~----~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~g--g~~~l~~~~~~-~~~~~~~~ 235 (454)
++. ++++++| |..||+|+|++||++|++ +++++ .++ +++....+.| +..+..+++.+ .++..+.+
T Consensus 162 ~~~~~~~~~i~~~Y--t~~GGl~aV~~TD~iQ~v--im~i~-~ii---v~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~ 233 (523)
T PRK10484 162 WLLVWLIGIIGAIY--AVFGGLKAVAVSDTINGI--GLLIG-GLL---VPVFGLIALGDGSFMQGLEQLTTVHPEKLNSI 233 (523)
T ss_pred HHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHH--HHHHH-HHH---HHHHHHHHhCCccHHhHHHHHhhcCchhhccc
Confidence 654 5667999 999999999999999964 66676 433 2222222223 23222232222 22222222
Q ss_pred CCC----chhhHHHHHHHHHHh-hhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Q psy14002 236 ETK----DYGLWIEGMLLLAFG-GIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYG 310 (454)
Q Consensus 236 ~~~----~~~~~~~~~~~~~~~-~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~ 310 (454)
++. .+..++.......+. ...+|+++||++++||+|++||+..+++.+.+++.+...++|+.++.++|+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR~~aak~~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~----- 308 (523)
T PRK10484 234 GGATDPVPFPTLFTGLILVNLFYWCTNQSIVQRALGAKNLAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDG----- 308 (523)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 211 111122112222233 3468999999999999999999999999988888888888999999998761
Q ss_pred CccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHH
Q psy14002 311 KNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGL 384 (454)
Q Consensus 311 ~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i 384 (454)
..++|+++|.++.+.+|+|+.|+++++++||.|||+||.+++.|+.++||+|++++|||.+|| |+.++++
T Consensus 309 ----~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~s~st~~t~Diy~~~~~~~~s~~~~l~v~Ri~~vv~ 384 (523)
T PRK10484 309 ----LPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLNSASTLFSLDIYKPIINPNASEKQLVKVGKKFGFVL 384 (523)
T ss_pred ----cCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred HHHHHHHHh---cCCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhhcc
Q psy14002 385 GAVTAAVMS---SADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQMS 443 (454)
Q Consensus 385 ~i~a~~la~---~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~~s 443 (454)
+++++.++. ..+++++++.....+....++++|++.+.+|||.|.++...|...+....
T Consensus 385 ~ii~~~~a~~~~~~~~~i~~~~~~~~~~~~~pl~~~~llgl~wkr~n~~ga~~g~i~G~~~~ 446 (523)
T PRK10484 385 AIISMIVAPLIANAPQGLYSYLQQLNGIYNVPILAIIIVGFFTKRVPALAAKVALGFGIILY 446 (523)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHhCcCChHHHHHHHHHHHHHH
Confidence 999999985 34457777766555555567788899999999999999999987766543
No 7
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=100.00 E-value=3.7e-60 Score=504.50 Aligned_cols=426 Identities=13% Similarity=0.099 Sum_probs=354.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHH
Q psy14002 2 VDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPL 81 (454)
Q Consensus 2 ~~~~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~ 81 (454)
+|+..++++++|+++++++|+|.+||+| +.|||++|||++|+|.+++++.+|++|+.+++|.++.+|.+|+++.|+.+
T Consensus 30 ~~~~~~~~~~~y~~~~l~ig~~~~r~~~--~~~dy~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~ 107 (549)
T TIGR02711 30 LNIQAIIMFLLFVGFTLYITYWASKKTR--SRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSL 107 (549)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcccC--CchhheeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 4667778899999999999999999888 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcc-hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchh
Q psy14002 82 GYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRI-GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQ 160 (454)
Q Consensus 82 ~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~-~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~ 160 (454)
++.++.++..++++||+||.+..|+||++++|||++. |.+.++.+++..+.|+..|+.+.|.++ +.++|+|++.
T Consensus 108 g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il-----~~~~gi~~~~ 182 (549)
T TIGR02711 108 GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLI-----ELLFGLNYHV 182 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCHHH
Confidence 9989988888899999999999999999999999774 888888899999999999999999999 9999999999
Q ss_pred hhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhh-cCccCCCCCCC-
Q psy14002 161 PYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFS-KVDWLGTVETK- 238 (454)
Q Consensus 161 ~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~-~~~~~~~~~~~- 238 (454)
++++..+++++| |..||||+++|||++|++ +|+++ .+++ ..+...+..||++++.++..+ +++....+++.
T Consensus 183 ~iii~~~i~~~Y--t~~GGm~av~~td~iQ~~--im~~g-~i~~--~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~ 255 (549)
T TIGR02711 183 AVVLVGILMVMY--VLFGGMLATTWVQIIKAV--LLLFG-ATFM--AFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGG 255 (549)
T ss_pred HHHHHHHHHHHH--HHhhhhHHHHHHHHHHHH--HHHHH-HHHH--HHHHHHHhCCCHHHHHHHHHhhCcccccccCCCc
Confidence 999999999999 999999999999999964 67776 4332 222222333478777665543 22211112221
Q ss_pred ---chhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCc--c
Q psy14002 239 ---DYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKN--F 313 (454)
Q Consensus 239 ---~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~--~ 313 (454)
....+++..+...++...+||..||++++||+|++||+..++..+..++.+...++|+.++.++|+. ++..++ .
T Consensus 256 ~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~taks~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~-~~~~~~~~~ 334 (549)
T TIGR02711 256 LVSDPISALSLGLGLMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFMGYFYILTFIIGFGAILLVSAN-PEFKDATGA 334 (549)
T ss_pred cccchHHHHHHHHHHHHHhcCCchhheeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccccccc
Confidence 1223455556667888899999999999999999999999998877777777788899999876421 011000 0
Q ss_pred CccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCC-CCCCC------eehhHHHHH
Q psy14002 314 TAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRP-KLTPN------WVAFFGLGA 386 (454)
Q Consensus 314 ~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~-~~s~~------Ri~~~~i~i 386 (454)
...++|.+.|.+..+..|+++.+++.++++||.|||+||.+++.|+.++||+|++++|| +.+|| |+.++++++
T Consensus 335 ~~~~~~~~~~~l~~~~~~~~l~glv~A~~~AA~mST~~s~l~a~st~i~~Diy~~~~~~~~~s~~~~~~v~Ri~~vv~g~ 414 (549)
T TIGR02711 335 LIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVIKKGKATERDELRVSKITVLILGV 414 (549)
T ss_pred cCCCcchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhhhhHHHHHHHHHHHH
Confidence 01245788899988999999999999999999999999999999999999999998864 56666 899999999
Q ss_pred HHHHHHhc-CCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhhc
Q psy14002 387 VTAAVMSS-ADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQM 442 (454)
Q Consensus 387 ~a~~la~~-~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~~ 442 (454)
+++.+++. .++++..+...+++...+..+|+++.+.||||.|.+|.+.|...+...
T Consensus 415 ia~~~a~~~~~~~i~~l~~~~~~~~a~~~~p~lllgl~Wkr~n~~GA~ag~i~G~~~ 471 (549)
T TIGR02711 415 IAIGLGILFENQNIAFMVGLAFSIAASCNFPIILLSMYWSKLTTRGAMIGGWLGLIT 471 (549)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999976 445788888888888777788888999999999999999988776443
No 8
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=100.00 E-value=8.2e-60 Score=495.05 Aligned_cols=416 Identities=16% Similarity=0.128 Sum_probs=340.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccCCC--CcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHH-
Q psy14002 4 VYGLAGIIIFYTLVLAIGVWAGTKQKNH--GEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVP- 80 (454)
Q Consensus 4 ~~~~~i~~~y~~~~l~ig~~~~r~~~~~--~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~- 80 (454)
|.++.++++|+++++++|+|.+||+|+. +.|||++|||++|+|..++|++||++|+++++|.++.+|++|+++.+..
T Consensus 1 ~~~~~~~~~y~~~~~~ig~~~~r~~~~~~~~~~dy~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~ 80 (471)
T TIGR02119 1 WEVVIPLIIYLVTVFLIAIYASKRVQSTDSFLNEYFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAM 80 (471)
T ss_pred CchHHHHHHHHHHHHHHHHHHheeccCCCCCccceeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHH
Confidence 3577889999999999999999988742 2469999999999999999999999999999999999999999764432
Q ss_pred HHHHHHHH---HHHHHHhhhhhccCccCchHHHHHhhcCcc-hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCC
Q psy14002 81 LGYSLALV---VGALLFVKPMREASYVTMLDPFQQAYGNRI-GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAI 156 (454)
Q Consensus 81 ~~~~l~~~---~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~-~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi 156 (454)
.+...+.+ +.+..+.|..||.|..|++|++++|||++. +.+.++..++..+.++.+|+.+.|.++ +.++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l-----~~~~gi 155 (471)
T TIGR02119 81 IQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLI-----ESLTGL 155 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCC
Confidence 22222222 223344455699999999999999999886 677788888888999999999999999 999999
Q ss_pred CchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhh-cCccCCCC
Q psy14002 157 SNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFS-KVDWLGTV 235 (454)
Q Consensus 157 ~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~-~~~~~~~~ 235 (454)
|++.++++..+++++| |..||+|++++||.+|+ ++++++ .+++ .+.. ..+.||+++..+++++ ++++....
T Consensus 156 ~~~~~iii~~~iv~iY--t~~GG~~av~~td~iQ~--~v~~~~-~~~~--~~~~-l~~~gG~~~~~~~l~~~~~~~~~~~ 227 (471)
T TIGR02119 156 SYLTALFIFSSSVLIY--TTFGGFRAVALTDAIQG--IVMFTG-TTIL--LIAV-IKAGGGVEKIMEKLKDIDPNLITPF 227 (471)
T ss_pred CHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHH--HHHHHH-HHHH--HHHH-HhcCCCHHHHHHHHHhcCccccCCC
Confidence 9999999999999999 99999999999999995 477776 4433 3333 3446889888888776 23332222
Q ss_pred CCCc---hhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCc
Q psy14002 236 ETKD---YGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKN 312 (454)
Q Consensus 236 ~~~~---~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~ 312 (454)
++.+ ...+.+.++...++....||.+||++++||+|++||+.++++++..++.+...+.|+.++..+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~-------- 299 (471)
T TIGR02119 228 GGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDSKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPD-------- 299 (471)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccC--------
Confidence 2222 11123344455677788899999999999999999999999998888888888899999988876
Q ss_pred cCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHHHH
Q psy14002 313 FTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGLGA 386 (454)
Q Consensus 313 ~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i~i 386 (454)
..++|.++|.++.+.+|||+.++++++++||.|||+||.+++.|+.++||+|+++.|||.+|| |+.++++++
T Consensus 300 --~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~ss~~~~Diy~~~~~~~~~~~~~~~~~r~~~~~~g~ 377 (471)
T TIGR02119 300 --LTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSSTIIKDLYLNYIPKEAKESKIKKISMCITLIIGL 377 (471)
T ss_pred --CCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH
Confidence 246899999999999999999999999999999999999999999999999999988888887 888999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhhc
Q psy14002 387 VTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQM 442 (454)
Q Consensus 387 ~a~~la~~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~~ 442 (454)
++..+++..++.+..+..+++....+..++|++.+.+|||.|.++.+.|...+...
T Consensus 378 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~plllgl~w~r~t~~ga~~~~i~G~~~ 433 (471)
T TIGR02119 378 LVIIAAIKPPDLIIWLNLFAFGGLEAAFIWPIVLGLYWKRANATGALASMIVGVGS 433 (471)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH
Confidence 99999998874444444445555667788999999999999999999888766543
No 9
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=100.00 E-value=2.1e-58 Score=492.18 Aligned_cols=420 Identities=15% Similarity=0.108 Sum_probs=333.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHH
Q psy14002 7 LAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLA 86 (454)
Q Consensus 7 ~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~ 86 (454)
|+++++|+++++++|+|. |+| |.|||++|||++|+|++++|+.||++|+.+++|.++.+|++|+++.|+.+++.++
T Consensus 2 ~~i~~~y~~~~l~iG~~~--~~~--s~~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~ 77 (552)
T TIGR03648 2 YLFVGATFALYIGIGIWS--RAG--STSEFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGG 77 (552)
T ss_pred eEEehHHHHHHHHHHHhe--ecC--chHHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 457889999999999997 345 7899999999999999999999999999999999999999999999998998888
Q ss_pred HHHHHHHHhhhhhccCccCchHHHHHhhcCcc-hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhh
Q psy14002 87 LVVGALLFVKPMREASYVTMLDPFQQAYGNRI-GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKE 165 (454)
Q Consensus 87 ~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~-~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~ 165 (454)
.++.+++++|++||.+..|++|++|+|||++. |.+.++..++..++|++.|+.+.+.++ +.++|+|++.++++.
T Consensus 78 ~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l-----~~~~gi~~~~~iii~ 152 (552)
T TIGR03648 78 YVLLALLLAPYLRKFGKYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVF-----SRFLEVDFETGVFIG 152 (552)
T ss_pred HHHHHHHHHHHHHHCCCccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCHHHHHHHH
Confidence 88889999999999999999999999999875 788888888899999999999999999 999999999999999
Q ss_pred hhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCc------chh------HhhhhhcC----
Q psy14002 166 PNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYL------KEP------NMTIFSKV---- 229 (454)
Q Consensus 166 ~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~------~~l------~~~~~~~~---- 229 (454)
.+++++| |..||+|+|+|||++|++ +|+++ .+++ +.+...+..|+. ++. .+++++..
T Consensus 153 ~~i~~iY--t~~GG~~aV~~TD~iQ~i--im~ig-~i~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (552)
T TIGR03648 153 MAIVFFY--AVLGGMKGVTWTQVAQYI--VLIVA-YLVP--AIFISLKLTGNPVPQLGYGSALSGVYLLDKLDELEVDLG 225 (552)
T ss_pred HHHHHHH--HHhhhHHHHHHHHHHHHH--HHHHH-HHHH--HHHHHHHhcCCCchhhhhHHHHhhhhhhhhhhhcccccc
Confidence 9999999 999999999999999964 66766 4332 333333323432 222 12222211
Q ss_pred --ccCCCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Q psy14002 230 --DWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAI- 306 (454)
Q Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~- 306 (454)
++.+..+..+...+++..+.+.++...+||++||++++||+|++||+..++..+..++......+|..++...++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~ 305 (552)
T TIGR03648 226 FAEYTEPFGSKSRINVFALTLALMVGTAGLPHVIVRFYTVPKVRDARWSAGWALFFIALLYTTAPAVAAFARYNLITTVN 305 (552)
T ss_pred hhhhccccccCChHHHHHHHHHHHHhcccchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 11111111123344444556667888899999999999999999999988876655555555556766665442110
Q ss_pred -CccCC-c-------------cCccCccchHH-------------------HHHHHhCchHHHHHHHHHHHHHHHhhhhh
Q psy14002 307 -PTYGK-N-------------FTAAESNSVLP-------------------LVLKELTPNWVAFFGLGAVTAAVMSSADA 352 (454)
Q Consensus 307 -~~~~~-~-------------~~~~~~~~~~p-------------------~l~~~~lp~~l~gl~~~~~laA~mST~ds 352 (454)
..+.+ + .+..++|.++| ....+.+|+|+.|+++++++||.|||+||
T Consensus 306 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~lp~~l~gl~~ag~~aA~mSt~~s 385 (552)
T TIGR03648 306 GTPYAELPGWVANWEKTGLLKFEDKNGDGILQYSGDAGNELTIDRDIIVLATPEIAGLPYWVIGLVAAGGLAAALSTAAG 385 (552)
T ss_pred ccccccchhhhhhhhccccccccccCCCCcccccccccccccccccHHHhhHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 00112233222 22345799999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhcccccccccccCC
Q psy14002 353 GILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEH 426 (454)
Q Consensus 353 ~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i~i~a~~la~~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~ 426 (454)
.+++.|++++||+|+++.||+.+|| |+.++++++++..+++..++++.++...++....+.+++|++.+.+|||
T Consensus 386 ~l~a~st~~~~Di~~~~~~~~~s~~~~l~~~R~~~v~~~~~~~~~a~~~~~~i~~l~~~~~~~~~~~~~~~~llgl~w~r 465 (552)
T TIGR03648 386 LLLVISSAISHDLYYRIINPNASEKQRLLVARIALVVAAVIAGYFGLNPPGFIAQVVAFAFGLAAASFFPALVLGIFWKR 465 (552)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999989988887 9999999999999999888789898888888777889999999999999
Q ss_pred CCcccccccchhhhhc
Q psy14002 427 PHYQVDLTGTAEKVQM 442 (454)
Q Consensus 427 ~~~~~~~~g~~~~~~~ 442 (454)
.|.++.+.|...+...
T Consensus 466 ~~~~ga~~g~i~G~~~ 481 (552)
T TIGR03648 466 MNREGAIAGMLTGLGF 481 (552)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999887765543
No 10
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=4.3e-57 Score=474.60 Aligned_cols=420 Identities=20% Similarity=0.210 Sum_probs=353.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHH
Q psy14002 3 DVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLG 82 (454)
Q Consensus 3 ~~~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~ 82 (454)
+..+++++.+|++.++.+|++++||.| |.|||++|||++|+++.++|..++++|+++++|.|+.+|.+|..+.|..++
T Consensus 2 ~~~~~ii~~iyli~~~~ig~~a~~~~~--~~~dy~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~ 79 (493)
T COG0591 2 MLILLIIFLIYLILMLLIGLYAYRKTK--SLEDYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIG 79 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcccC--chHHHhccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHH
Confidence 567889999999999999999999999 999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhhhhcc----CccCchHHHHHhhcCc-chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCC
Q psy14002 83 YSLALVVGALLFVKPMREA----SYVTMLDPFQQAYGNR-IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAIS 157 (454)
Q Consensus 83 ~~l~~~~~~~~~~~~~r~~----~~~T~~d~l~~Ryg~~-~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~ 157 (454)
..++..+...+++||+||. |.+|+||++++|||++ .|.+.+++.++..++|++.|+++.+.++ +..+|+|
T Consensus 80 ~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~-----~~~~gi~ 154 (493)
T COG0591 80 LLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLL-----SLLFGIS 154 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhcCCC
Confidence 8788888899999999875 5999999999999955 4999999999999999999999999999 9999999
Q ss_pred chhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccC--CCC
Q psy14002 158 NAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWL--GTV 235 (454)
Q Consensus 158 ~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~--~~~ 235 (454)
+..+.++...++++| |.+||+|+++|||.+|++ +|+++ +.. +++......||+++..+...+..+.. .++
T Consensus 155 ~~~~~~~~~~~v~~Y--t~~gG~~av~~Td~iqg~--im~i~-~~~---~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 226 (493)
T COG0591 155 YVTGILIGALIVALY--TFLGGLRAVVWTDFIQGL--IMLIA-LIV---IPILVLILFGGFGELFAVLASLAPLFLTHPF 226 (493)
T ss_pred HHHHHHHHHHHHHHH--HHHcChhHHHHHHHHHHH--HHHHH-HHH---HHHHHHhhcccHHHHHHHHHhcccccccCcc
Confidence 999999999999999 999999999999999975 77777 543 34444444689998888877633221 122
Q ss_pred CCCchhhHHH---HHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCCccCC
Q psy14002 236 ETKDYGLWIE---GMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPA-GAFGIIARMVDWSAIPTYGK 311 (454)
Q Consensus 236 ~~~~~~~~~~---~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~-~~iG~~a~~~~p~~~~~~~~ 311 (454)
+......+.. .+....+++..+||..||+++.||+|+.+|.....+.+..++++.. ..+|+....++++. +. .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-~~--~ 303 (493)
T COG0591 227 DGALSPIYIISLIAWGTLFLGYFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLL-PD--L 303 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhcCchhhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc--c
Confidence 2212122221 2333458889999999999998888887766666666655544433 55677777665541 00 0
Q ss_pred ccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHHH
Q psy14002 312 NFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGLG 385 (454)
Q Consensus 312 ~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i~ 385 (454)
..+..|+|+++|.++.+.+|||..|+.+.+++||+|||+|+++++.|+.++||+||++.|||++|| |..+++++
T Consensus 304 ~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ll~~ss~~t~Diyk~~~~~~a~~k~l~~i~r~~v~vi~ 383 (493)
T COG0591 304 SVPLLNPELVFPYLILALFPPWIAGLLLAAILAAVMSTASSQLLVASSAITRDIYKRFLRKNASEKELVRIGRVVVLVIA 383 (493)
T ss_pred cccCCCHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCChhHhhHHHHHHHHHHH
Confidence 123468999999999999999999999999999999999999999999999999999999989888 88999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhh
Q psy14002 386 AVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKV 440 (454)
Q Consensus 386 i~a~~la~~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~ 440 (454)
.+++.++...++.+.++...+...+.++++|+.+..++|||.|++|...|+..+.
T Consensus 384 ~~a~~~a~~~~~~i~~l~~~~~~g~~a~~~p~~~~~L~wkr~t~~ga~agmi~G~ 438 (493)
T COG0591 384 LLALLLALLPPSSILGLVSLALAGFGAQFLPALLLGLFWKRATKRGAIAGMIAGL 438 (493)
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHhheeeeccchHhHHHHHHHHHH
Confidence 9999999999988888888888877778999999999999999999988776543
No 11
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=100.00 E-value=2.8e-58 Score=474.96 Aligned_cols=387 Identities=19% Similarity=0.254 Sum_probs=295.3
Q ss_pred ceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhc
Q psy14002 36 VMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYG 115 (454)
Q Consensus 36 f~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg 115 (454)
|++|||++|+|++++|++||++|+++++|.+|.+|++|+++.|+.+++.++.++.+++++||+||.|..|++|++|+|||
T Consensus 1 f~~agr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 1 FFVAGRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYG 80 (406)
T ss_dssp -----S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-
T ss_pred CeeCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcC
Confidence 78999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred Ccc--hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHH
Q psy14002 116 NRI--GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGML 193 (454)
Q Consensus 116 ~~~--~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~ 193 (454)
++. |.+.++..++..++|++.|+++.+.++ +..+|+|++.++++..+++++| |..||+|++++||.+|++
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~-----~~~~gi~~~~~~~i~~~i~~iY--t~~GGl~av~~td~iQ~~- 152 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALL-----SVLFGIPYNTAILIVGVIVIIY--TFFGGLRAVAWTDFIQGV- 152 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHH-----HHHTT--HHHHHHHHHHHHHHT--TCTT------SHHHHHHH-
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccch-----hhccchhhhHHHHHHHHHHHHh--hhhhhHhhhhHHHHHHHH-
Confidence 999 777777788888899999999999999 9999999999999999999999 999999999999999964
Q ss_pred HHHHHHHHHHhhhhhhheeccCCCcchhHhhhhh-cCccCCCCCCCc------hhhHHHHHHHHHHhhhcchhHHHHHhc
Q psy14002 194 LLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFS-KVDWLGTVETKD------YGLWIEGMLLLAFGGIPWQSYFQRVLS 266 (454)
Q Consensus 194 ~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~p~~~qr~~a 266 (454)
+++++ .++. .++ ...+.||++++.+++.+ +++..+..++.+ ........+...++...+|+++||+++
T Consensus 153 -i~~~~-~~~~--~~~-~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~a 227 (406)
T PF00474_consen 153 -IMIIG-AIVV--LIF-VLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFLA 227 (406)
T ss_dssp -HHHHH-HHHH--HHH-HHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHHS
T ss_pred -HHHHH-HHHh--hhc-cchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHHh
Confidence 67777 4432 333 34446889888888776 222211122221 122222334567778888999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHH
Q psy14002 267 LRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAV 346 (454)
Q Consensus 267 aks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~ 346 (454)
+||+|++||+...+..+..++.....++|+.+..+.+.. ++.. .++..++|+++|+++.+++|||+.++++++++||+
T Consensus 228 ak~~~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~ 305 (406)
T PF00474_consen 228 AKSPKTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLY-PDAA-GPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAI 305 (406)
T ss_dssp SSHHHHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH--TT---S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhHHhhhheeeehHHhhhhhhhhcccccc-cccc-cccccCCcccchhhhhhhccchhHHHHHHHHHHhh
Confidence 999999999999888776666655556777665443210 0000 02346789999999999999999999999999999
Q ss_pred HhhhhhHHHhhhhhhhHHHHHhhcCCC-CCCC------eehhHHHHHHHHHHHhcCCch-HHHHHHHHHHhhhhhccccc
Q psy14002 347 MSSADAGILSSSSMFTRNIYKLSFRPK-LTPN------WVAFFGLGAVTAAVMSSADAG-ILSSSSMFTRNIYKLSFRPK 418 (454)
Q Consensus 347 mST~ds~l~a~ss~l~~Di~~~~~~~~-~s~~------Ri~~~~i~i~a~~la~~~~~~-i~~l~~~~~~~~~~~~f~p~ 418 (454)
|||+||.+++.+++++||+|++++||+ .+|| |+.+++++++++.+++..++. +.++....+....+++++|.
T Consensus 306 ~ST~~s~l~a~ss~~~~Di~~~~~~~~~~s~~~~~~~~ri~~~v~~~i~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~ 385 (406)
T PF00474_consen 306 MSTADSLLLAISSIFSRDIYKPFIKPNSASEKQLLRVSRIAIVVIGIIAILLALFFPDSGIIDLILFAFGILAAPFFPPL 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCC-SS-S-SSHHHHHHHHHHHHHHHHHHHHGGGGGGSSHHHHHHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHhhhhhhhhHHhhhccccccccchhhhhhccceeEEeeHHhHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887 7787 889999999999999988755 88988888888888899999
Q ss_pred ccccccCCCCcccccccch
Q psy14002 419 VDLTPDEHPHYQVDLTGTA 437 (454)
Q Consensus 419 ~~~~~~k~~~~~~~~~g~~ 437 (454)
+.+.+|||.|.++.+.|..
T Consensus 386 ~~gl~wkr~t~~ga~~~~i 404 (406)
T PF00474_consen 386 LLGLYWKRATKRGAIAGMI 404 (406)
T ss_dssp HHHHH-TT--HHHHHHHHH
T ss_pred HHhhccCCCCHHHHhhhee
Confidence 9999999999998887754
No 12
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=100.00 E-value=7.2e-57 Score=433.56 Aligned_cols=408 Identities=18% Similarity=0.129 Sum_probs=346.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC-CCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHH-HHH--
Q psy14002 8 AGIIIFYTLVLAIGVWAGTKQKN-HGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVP-LGY-- 83 (454)
Q Consensus 8 ~i~~~y~~~~l~ig~~~~r~~~~-~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~-~~~-- 83 (454)
+.++.|++.++++++|.+||+++ +-..||++||||++.+++++++.||.+|+.+|+|.|+.+|++|++|.... +-.
T Consensus 5 ~pli~YL~~v~~i~iy~~~k~~k~~fLneYylgnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp~ 84 (473)
T COG4145 5 LPLIGYLVVVFGIAIYAYRKRSKGSFLNEYYLGNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVPT 84 (473)
T ss_pred hhHHHHHHHHHHHHHHHHhhhccccchHHHHhccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHHH
Confidence 56789999999999999665443 36899999999999999999999999999999999999999999986422 111
Q ss_pred -HHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcc-hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhh
Q psy14002 84 -SLALVVGALLFVKPMREASYVTMLDPFQQAYGNRI-GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQP 161 (454)
Q Consensus 84 -~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~-~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~ 161 (454)
.+.+.+.+-.+++.-||.|..|++|++++||.++. .+++++..++....+..+|+.|.++++ |...|+||.++
T Consensus 85 ~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLl-----E~~~gidY~tg 159 (473)
T COG4145 85 VWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLL-----ETALGIDYTTG 159 (473)
T ss_pred HHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-----HHHHCCCchhh
Confidence 12333334455555688999999999999999997 567777777888889999999999999 99999999999
Q ss_pred hhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCcc-CCCCCCC--
Q psy14002 162 YLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDW-LGTVETK-- 238 (454)
Q Consensus 162 i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~-~~~~~~~-- 238 (454)
..+.+..+.+| |.+||.|+|++||.+|+. +|++| .++ +.+...+..||+++..+++.+.+|- ....+.+
T Consensus 160 L~ifa~~V~iY--t~fGGFRAvvltD~IQG~--vmlig-tv~---Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~ 231 (473)
T COG4145 160 LLIFAVSVAIY--TAFGGFRAVVLTDTIQGL--VMLIG-TVV---LFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDI 231 (473)
T ss_pred HHHHHHHHHHH--HhhcceeeeehHHHHHHH--HHHHH-HHH---HHHHHHHhccCHHHHHHHHHhCCccccCCCCCccc
Confidence 99999999999 999999999999999985 67777 443 2233344569999999999883332 2221211
Q ss_pred -chhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccC
Q psy14002 239 -DYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAE 317 (454)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~ 317 (454)
......|.++..++|....||...||.+.||+|..++++.++......+.+.+.++|..++++.||. .+
T Consensus 232 l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kDskaih~gmiigt~vi~il~~gmhl~G~~graViPdl----------t~ 301 (473)
T COG4145 232 LDPPFMASFWILVCFGVLGLPHTAVRCIAFKDSKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDL----------TV 301 (473)
T ss_pred ccchHHHHHHHHHHHHHhcCcHHHHHHHhccchhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCC----------Cc
Confidence 2345568889999999999999999999999999999999999999888999999999999999983 57
Q ss_pred ccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHHHHHHHHH
Q psy14002 318 SNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGLGAVTAAV 391 (454)
Q Consensus 318 ~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i~i~a~~l 391 (454)
+|.+.|.+..+.+||...|+++++.+||+|||.||+++-.||.+.+|+|.+...++.+|| +++++.++.+-++.
T Consensus 302 ~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~sstliKdLy~~~~~~~~~E~ki~~is~~~t~i~~~l~~i~ 381 (473)
T COG4145 302 VDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSSTLIKDLYLNVRDKLKNERKIKRISMIATLIFGALLLIA 381 (473)
T ss_pred cchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999754556666 56788899999999
Q ss_pred HhcCCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchh
Q psy14002 392 MSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAE 438 (454)
Q Consensus 392 a~~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~ 438 (454)
++++|+-+.++..++++..-+..+||.+.++||+++|..+.++-+-.
T Consensus 382 al~Pp~~iiwlnlfAfggle~~Fl~plvlgLYw~kaNa~ga~aSMi~ 428 (473)
T COG4145 382 ALNPPEMIIWLNLFAFGGLEAVFLWPLVLGLYWEKANAAGALASMIV 428 (473)
T ss_pred hhCCcceeeeeehhhhcchhhHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999888888888998888999999999999999998877654433
No 13
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=100.00 E-value=6.6e-56 Score=457.40 Aligned_cols=385 Identities=20% Similarity=0.180 Sum_probs=322.3
Q ss_pred cCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCc-
Q psy14002 39 AGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNR- 117 (454)
Q Consensus 39 agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~- 117 (454)
|||++|+|++++|+.||++|+++++|.++.+|++|+++.|+.+++.++.++.++++.|+.||.+..|++|++++|||++
T Consensus 1 agr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 1 AGRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence 7999999999999999999999999999999999999999999999999899999999999999999999999999996
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHH
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAF 197 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~ 197 (454)
.|.+.++..++..+.|++.|+++.++++ +.++|+|++.++++.++++++| |..||+|++++||++|++ +|+
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il-----~~~~gi~~~~~~ii~~~i~~~Y--t~~GG~~av~~Td~iQ~~--i~~ 151 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLI-----ELITGLDLYLSLLLLGAITILY--TVFGGLKAVVWTDTIQAV--IMI 151 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCchHHHHHHHHHHHHHHH--HHHcchHHHHHHHHHHHH--HHH
Confidence 5788888889999999999999999999 9999999999999999999999 999999999999999964 677
Q ss_pred HHHHHHhhhhhhheeccCCCcchhHhhhhhcCc-------cCCC-CCCCc-hhhH-HHHH-HHHH-HhhhcchhHHHHHh
Q psy14002 198 GGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVD-------WLGT-VETKD-YGLW-IEGM-LLLA-FGGIPWQSYFQRVL 265 (454)
Q Consensus 198 ~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~-------~~~~-~~~~~-~~~~-~~~~-~~~~-~~~~~~p~~~qr~~ 265 (454)
++ .++ +......+.||++++.+.+++..+ ..+. .++.. ...| +... .... .....+|+++||++
T Consensus 152 ~~-~i~---~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~qR~~ 227 (407)
T TIGR00813 152 LG-TFI---LPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVIVQRCL 227 (407)
T ss_pred HH-HHH---HHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCHHHhhHHH
Confidence 76 443 223344556899999888776322 1111 11111 1122 1110 1111 11237889999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHH
Q psy14002 266 SLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAA 345 (454)
Q Consensus 266 aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA 345 (454)
++||+|++||+..+++++..++.++..++|+.++.++|+..++... ....|+|+++|.++.+.+|+|+.|+++++++||
T Consensus 228 a~ks~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~-~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA 306 (407)
T TIGR00813 228 AAKSAKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAG-AVNQNSDQAYPLLVQELMPPGLAGLFLAAILAA 306 (407)
T ss_pred hcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhc-ccCCChhhHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 9999999999999999988888888999999999988652111100 002478999999999999999999999999999
Q ss_pred HHhhhhhHHHhhhhhhhHHHHHhhcCCCCC-CC------eehhHHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhccccc
Q psy14002 346 VMSSADAGILSSSSMFTRNIYKLSFRPKLT-PN------WVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK 418 (454)
Q Consensus 346 ~mST~ds~l~a~ss~l~~Di~~~~~~~~~s-~~------Ri~~~~i~i~a~~la~~~~~~i~~l~~~~~~~~~~~~f~p~ 418 (454)
.|||+||.+++.|+.++||+|++++|||.+ || |+.++++++++..++...++++.++...+.+...++.++|.
T Consensus 307 ~mST~~s~l~a~ss~~~~Di~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~pl 386 (407)
T TIGR00813 307 VMSTLSSQLNSASTVFTMDLYKKIIRPNASGEKKIVMRGRIAVLVAAVIAGFVAAAQGGQVLQYVQEAFGGLGAPFLPVF 386 (407)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcchHHHHH
Confidence 999999999999999999999999888876 55 77888899999998887777899988888888888999999
Q ss_pred ccccccCCCCcccccccch
Q psy14002 419 VDLTPDEHPHYQVDLTGTA 437 (454)
Q Consensus 419 ~~~~~~k~~~~~~~~~g~~ 437 (454)
+.+.+|||.|.++.+.|..
T Consensus 387 ~lgl~w~r~~~~ga~~~~i 405 (407)
T TIGR00813 387 LLGIFWKRMNAKGALAGMI 405 (407)
T ss_pred HHHHhcCcCChHhHHHHhh
Confidence 9999999999998887753
No 14
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=100.00 E-value=1e-54 Score=432.15 Aligned_cols=423 Identities=14% Similarity=0.102 Sum_probs=366.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHH
Q psy14002 2 VDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPL 81 (454)
Q Consensus 2 ~~~~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~ 81 (454)
.|+..+.++++|....+.+++|.++|+| |..||++|||+++.+..++.+.++|+|+.+|+|.++..+..|+.+.+|.+
T Consensus 4 ~~~~~i~i~~l~v~~~l~i~~~~~~R~~--s~tdyYvAG~~i~~fqNGlAiagdyMSaASflGiag~I~~~GYdG~~Y~i 81 (529)
T COG4147 4 VNWQVIGIFVLFVLITLYITYWASKRTR--SATDYYVAGGRITGFQNGLAIAGDYMSAASFLGIAGLIFISGYDGLIYSI 81 (529)
T ss_pred CcceeEehhHHHHHHHHhheeeeecccc--cccceeecCCcccccccceehhccccchHhhhchhHhhhhcccchHHHHH
Confidence 4556677889999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcc-hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchh
Q psy14002 82 GYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRI-GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQ 160 (454)
Q Consensus 82 ~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~-~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~ 160 (454)
|+..|+++..++++|++||.|-+|.||++.+||+++. |.++++.+++..+.|+.+|+.|.|+++ +.++|+|+++
T Consensus 82 G~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li-----~~l~gv~~~v 156 (529)
T COG4147 82 GWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLI-----SLLLGVPYHV 156 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHhCCCcee
Confidence 9999999999999999999999999999999999886 999999999999999999999999999 9999999999
Q ss_pred hhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccC---CCCCC
Q psy14002 161 PYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWL---GTVET 237 (454)
Q Consensus 161 ~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~---~~~~~ 237 (454)
++++..+++.+| +.+|||++.+||.++|++ +++.+.++. ..++..+..|++....+...+..+.. ...+|
T Consensus 157 gv~ig~ilm~~Y--vv~GGM~atTW~Qi~qav--lLi~a~~i~---ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 229 (529)
T COG4147 157 GVVIGGILMMVY--VVLGGMKATTWVQIIQAV--LLIVAALIM---AIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEP 229 (529)
T ss_pred ehhhHhHHHHHH--HHhcchhhhhHHHHHHHH--HHHHHHHHH---HHHHHHHHcCCcchHHHHHhhcCcccCcccccCC
Confidence 999999999999 999999999999999975 667763443 33344454566666555544422211 11122
Q ss_pred ----CchhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC---
Q psy14002 238 ----KDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYG--- 310 (454)
Q Consensus 238 ----~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~--- 310 (454)
.++...+++.+.+.+|....||...|+++.+|.||+|||..++..+...+++....+|..++...-+. +.++
T Consensus 230 Gl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~-~~~~p~w 308 (529)
T COG4147 230 GLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTN-PVGKPAW 308 (529)
T ss_pred CCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCcch
Confidence 23445667788888999999999999999999999999999999999899988888999999775321 1111
Q ss_pred -------Cc----cCccCccchHHHHHHHhC-chHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC-
Q psy14002 311 -------KN----FTAAESNSVLPLVLKELT-PNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN- 377 (454)
Q Consensus 311 -------~~----~~~~~~~~~~p~l~~~~l-p~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~- 377 (454)
++ -.....|++.+....+.- |+|+.+++.++.+|+++||+++.+++.+|.++||+|.+.+||+++||
T Consensus 309 ~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~ase~~ 388 (529)
T COG4147 309 AAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGATEKK 388 (529)
T ss_pred hhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccc
Confidence 00 011223778888888887 79999999999999999999999999999999999999999999888
Q ss_pred -----eehhHHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhh
Q psy14002 378 -----WVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEK 439 (454)
Q Consensus 378 -----Ri~~~~i~i~a~~la~~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~ 439 (454)
|+.+++.++++..++..+++++.+++.+++++..++.||.++...||||.|.+|.+.|...+
T Consensus 389 ~v~vaRi~~v~~~vva~~lgi~~~gnVaflVa~AF~lAaSa~fPvivlglfWKr~n~~GAi~G~~~G 455 (529)
T COG4147 389 EVRVARIAVVILGVVAILLGILPPGNVAFLVALAFALAASANFPVIVLGLFWKRLNTAGAIAGMLLG 455 (529)
T ss_pred eehhHHHHHHHHHHHHHHheecCCccHHHHHHHHHHHHHHcccchhhHHHHHhhccHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887554
No 15
>KOG3761|consensus
Probab=100.00 E-value=4e-50 Score=381.19 Aligned_cols=425 Identities=43% Similarity=0.776 Sum_probs=378.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhhcccCCC---------CcccceecCcccChHHHHHHHHHHhhccccccccchHHHh
Q psy14002 1 MVDVYGLAGIIIFYTLVLAIGVWAGTKQKNH---------GEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFT 71 (454)
Q Consensus 1 ~~~~~~~~i~~~y~~~~l~ig~~~~r~~~~~---------~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~ 71 (454)
|.|...++.++.|+++++.+|+|+.||.|++ ..|+-.++||++|..+-++++.|||+|++.+-|.++..|.
T Consensus 1 ~~~l~giiaii~fyllillvgiwa~~kskns~~~e~~agaate~iil~grdig~lvg~ftmtatwvgg~yingtaealy~ 80 (591)
T KOG3761|consen 1 AADLEGIIAIIFFYLLILLVGIWAARKSKNSGEAEEEAGAATEAIILAGRDIGLLVGGFTMTATWVGGAYINGTAEALYN 80 (591)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhcccCccchhhhccccchhheeccccceeeeeeEEEEEEEecceeeccchhhhcc
Confidence 3466778888999999999999999999852 2478899999999999999999999999999999999999
Q ss_pred c--chhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhhccc
Q psy14002 72 T--GLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLC 149 (454)
Q Consensus 72 ~--G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~ 149 (454)
. |+.|...++||.+.+++.+++|++++|+.|+.|+-|-+++.||++.+.+..+..+++..+|.++.+.++|..+
T Consensus 81 ~gygl~~~qapigyaislilggl~fak~mr~egyitmldpfq~~ygkriggll~ipallge~fwaaai~salgati---- 156 (591)
T KOG3761|consen 81 GGYGLAGAQAPIGYAISLILGGLFFAKKMREEGYITMLDPFQHIYGKRIGGLLFIPALLGEMFWAAAIFSALGATI---- 156 (591)
T ss_pred CCcccccccCcchhhHHHHhhhhhhcchhhhcCcEEeechHHHHhhhhccceEeeHHHHhHHHHHHHHHHHhcCeE----
Confidence 7 5566678999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred cccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccC---CCcchhHhhhh
Q psy14002 150 LSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQ---PYLKEPNMTIF 226 (454)
Q Consensus 150 ~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~---gg~~~l~~~~~ 226 (454)
+.+.++|...++++...+..+| |..||+-+|++||++| ++++++| +++| +|....+.. =|++..+++.
T Consensus 157 -svii~idm~~sv~isa~ia~~y--t~~gg~yavaytdvvq--lfcifvg-lwi~--vp~al~h~~~~di~~~a~haky- 227 (591)
T KOG3761|consen 157 -SVIIDIDMHASVIISACIATFY--TFTGGLYAVAYTDVVQ--LFCIFVG-LWIC--VPAALSHDAAADIGFNAGHAKY- 227 (591)
T ss_pred -EEEEeccccHhHHHHHHHHHHH--hhccceEEEeehhHHH--HHHHHhh-hhee--chhhhcCchhhhcccccccccc-
Confidence 9999999999999999999999 9999999999999999 8899999 9989 999876510 1233333333
Q ss_pred hcCccCCCCCCC-chhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14002 227 SKVDWLGTVETK-DYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSA 305 (454)
Q Consensus 227 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~ 305 (454)
+.+|.+..+.. ....|+-.+++..+|.+.||.++||++++|+..-++.-.+++++-+++++++..++|.+++.-.++.
T Consensus 228 -qk~wig~i~g~~e~~~wid~~lll~~ggipwq~yfqrvlss~sa~~aq~lsfla~~gcilmaip~~ligai~~ntdw~~ 306 (591)
T KOG3761|consen 228 -QKDWIGEIDGFKETSLWIDCFLLLMFGGIPWQAYFQRVLSSKSAHGAQTLSFLAAFGCILMAIPAALIGAIAANTDWNM 306 (591)
T ss_pred -cCCceeccCCchhhHHHHHHHHHHHhcCCcHHHHHHHHHhccccchhHHHHHHHHhchHheeCCHHHHhhhhccCcccc
Confidence 45888777643 3457887788889999999999999999999999999999999999999999999999998777664
Q ss_pred CCccCCc--------cCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC
Q psy14002 306 IPTYGKN--------FTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN 377 (454)
Q Consensus 306 ~~~~~~~--------~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~ 377 (454)
+.|+.+ .+..+.|+++|...+-+-|.|+.-+-+.++-||.||++||-+++.++++++||||--+||++|||
T Consensus 307 -t~y~~~d~~tkvesip~d~~dmilpiv~qyl~p~~iaf~glgavsaavmssadssilsaasmfa~ni~kls~r~~asdk 385 (591)
T KOG3761|consen 307 -TAYGLPDNGTKVESIPPDEADMILPIVFQYLCPRWIAFFGLGAVSAAVMSSADSSILSAASMFAHNIWKLSFRPHASDK 385 (591)
T ss_pred -cccCCCCCCcccccCCccccceehhHHHHhhchHHHhhhcchHHHHHHHhccchHhhhHHHHHhhhhheeeeccCCCCc
Confidence 333321 34567899999998888899999999999999999999999999999999999999999999999
Q ss_pred ------eehhHHHHHHHHHHHhcCCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhh
Q psy14002 378 ------WVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQ 441 (454)
Q Consensus 378 ------Ri~~~~i~i~a~~la~~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~ 441 (454)
|+.++.+|+.+...|+... +++.++++..++++..+||.++|.++.|++|.-|++.|-+.+..
T Consensus 386 eii~vmriai~~~g~~at~mal~~k-siyglwyl~adlvyiiifpqllcvl~m~~sntygalagy~~gl~ 454 (591)
T KOG3761|consen 386 EIIIVMRIAIFCFGAMATAMALLIK-SIYGLWYLCADLVYIIIFPQLLCVLFMKGSNTYGALAGYASGLF 454 (591)
T ss_pred eEEEEEEehhhhhhHHHHHHHHHHH-HHHHHHHHhhceeEeEeccceeeEEEecCCCcchhhhhhheeeE
Confidence 9999999999999999999 99999999999999999999999999999999999999887654
No 16
>KOG2349|consensus
Probab=100.00 E-value=5.6e-49 Score=407.00 Aligned_cols=423 Identities=16% Similarity=0.135 Sum_probs=349.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHH
Q psy14002 4 VYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGY 83 (454)
Q Consensus 4 ~~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~ 83 (454)
..|+.++++|+....++|.|+..|.|+++.|||++|||++.+|.+++|++||.+|+..++|.|++.|++|+...++.+..
T Consensus 8 ~~d~~v~~l~~~~~~~ig~~~~~~~~~~t~~~y~l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~ 87 (585)
T KOG2349|consen 8 AADYSVFVLYFLLVMAIGLWFGFRTKRGTVEEYFLGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNA 87 (585)
T ss_pred ccchhHHHHHHHHhhhheeeEEEEcCCccHhhhhhcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHH
Confidence 67999999999999999999987776669999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhh
Q psy14002 84 SLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYL 163 (454)
Q Consensus 84 ~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~ 163 (454)
.+..++.++.+.|.+.|.+.+|.+|++|+||+++.|.+.++...+..+.++..-+++-+..+ ++.+|++......
T Consensus 88 l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~-----~qvtg~~~~l~~~ 162 (585)
T KOG2349|consen 88 LLSVLLLGWIFIPVFYRLGVTTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAI-----NQVTGINLYLIVV 162 (585)
T ss_pred HHHHHhhheEEEEEEEecCeeehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHH-----HHHhccCceeehH
Confidence 88888899999999999999999999999999999989888888888899999999999998 9999999999999
Q ss_pred hhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhc--CccCC--CCCCCc
Q psy14002 164 KEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSK--VDWLG--TVETKD 239 (454)
Q Consensus 164 i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~--~~~~~--~~~~~~ 239 (454)
+...++++| |..||+++|+|||++|. ++|+.+ .+. +-.....+.||.+.+.+...+. ..+.+ +.+|..
T Consensus 163 ~~~~ic~~Y--T~~GGlkaVi~TDv~Q~--~iml~~-~~~---v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~v 234 (585)
T KOG2349|consen 163 ILGLICVFY--TALGGLKAVIWTDVVQT--VIMLGG-VLA---VMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTV 234 (585)
T ss_pred HHHHHHHHH--HHhcCeeEEEEhhHHHH--HHHHHH-HHH---HhheeehhcCcccceeeecccCCceeecccccCCCcc
Confidence 999999999 99999999999999995 588888 443 3334456679999998887762 11111 223321
Q ss_pred -hhhH---HHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCc
Q psy14002 240 -YGLW---IEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTA 315 (454)
Q Consensus 240 -~~~~---~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~ 315 (454)
...| ++..+.+.-.+..+|..+||+++.||.|.+|+++++.............+.|+..+.+|++..+.-+. ..
T Consensus 235 r~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g--~v 312 (585)
T KOG2349|consen 235 RHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGG--LV 312 (585)
T ss_pred cccchhHhcCCcHHHHHHHhhhHHHHhHHhccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCccccc--cc
Confidence 1223 23233444445789999999999999999999999999999888888899999999999876432221 24
Q ss_pred cCccchHHHHHHHhCc--hHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHHHHH
Q psy14002 316 AESNSVLPLVLKELTP--NWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGLGAV 387 (454)
Q Consensus 316 ~~~~~~~p~l~~~~lp--~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i~i~ 387 (454)
..+|+.+|.++++.+| |++.|++++++++|.|||++|.+|+.|+.+.+|++||..| +.+|| |+.+++.|++
T Consensus 313 ~~~D~~~P~fV~d~~~~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~eD~ik~~~k-~~se~~~~~~~r~~vvv~G~~ 391 (585)
T KOG2349|consen 313 GCPDQLLPLFVMDLMGHLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLEDYIKPLRK-PLSERELNIAMRLFVVVLGLI 391 (585)
T ss_pred CCccccccHHHHHhcCCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-CcChHHHhhhhheeeeeehhH
Confidence 6789999999999999 9999999999999999999999999999999999999754 77777 9999999999
Q ss_pred HHHHHhcCC--chHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhhc
Q psy14002 388 TAAVMSSAD--AGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQM 442 (454)
Q Consensus 388 a~~la~~~~--~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~~ 442 (454)
++.++..-. +.+++......+....++.--+..+.++||.|.+++..|......+
T Consensus 392 si~~~fvv~~~~~vlq~~~si~g~~~gP~~gvF~Lgmf~pr~N~kgA~~Gli~~~~~ 448 (585)
T KOG2349|consen 392 SIGLAFVVELLQQVLQYSQSIFGYLGGPLLGVFVLGMFVPRVNEKGALVGLIAGLLL 448 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhccccCCcchhHHHHHHHHH
Confidence 998887443 2444433322222222333334467788999999888887765543
No 17
>COG4146 Predicted symporter [General function prediction only]
Probab=100.00 E-value=2.9e-42 Score=332.01 Aligned_cols=378 Identities=16% Similarity=0.145 Sum_probs=297.6
Q ss_pred HHHHHHHHHHHHHHhhcccCC---CCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHH
Q psy14002 10 IIIFYTLVLAIGVWAGTKQKN---HGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLA 86 (454)
Q Consensus 10 ~~~y~~~~l~ig~~~~r~~~~---~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~ 86 (454)
++.|....+.+.+..++|+|+ +|++.||+|||++...+.++|++-|..|....+|..+.+|+.+++...+.....+.
T Consensus 6 i~sFl~~t~~Va~isW~Ktr~~Dl~ss~GYFLaGR~Lsg~VI~~SlvLTnLSTEQlvGln~~ayk~~~svmaWeVts~i~ 85 (571)
T COG4146 6 ILSFLGVTLLVAIISWWKTRGTDLSSSKGYFLAGRSLSGLVIACSLVLTNLSTEQLVGLNGQAYKGNMSVMAWEVTSVIP 85 (571)
T ss_pred HHHHHHHHHHHHheeeeeccCCccccccceEeccCcccchhheehhhhhcccHHHhccccceeccCCeEEEEEEecchHH
Confidence 334444444444444444443 48999999999999999999999999999999999999999999877666777788
Q ss_pred HHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHHHHH-HHHHHHHHhhhHhhhc-cccccccCCCchhhhh-
Q psy14002 87 LVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDV-FWIASVLSSLGSVVDT-LCLSFPFAISNAQPYL- 163 (454)
Q Consensus 87 ~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~-~~~~~ql~~~g~i~~~-~~~~~~~gi~~~~~i~- 163 (454)
..++++.+.||+-|.|.+|+||++|+||+++.|.+.+.+.++.+. .++...++..+..+++ +.+++.+++++..+++
T Consensus 86 L~flAl~~lprylK~GitTIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~~v~~IS~g~~i~~ 165 (571)
T COG4146 86 LIFLALYFLPRYLKRGITTIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLGEVLQISHGAAIWL 165 (571)
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchHhhhCcCcchHHHH
Confidence 888999999999999999999999999999999988877776653 4577888888888866 5567778888765544
Q ss_pred ---hhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccC--C----CcchhHhhhhhcCccCCC
Q psy14002 164 ---KEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQ--P----YLKEPNMTIFSKVDWLGT 234 (454)
Q Consensus 164 ---i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~--g----g~~~l~~~~~~~~~~~~~ 234 (454)
..+++-.+| ..+||+|+++.+|.++++ .+++|.+. +|+....+. | |++++....+|+.+..+.
T Consensus 166 ~viaiG~~g~~Y--ai~GGLkA~AvsDtiNgi--gLviGgLl----vPifaLi~lG~Gsfa~G~~~itt~h~eKlNaIGg 237 (571)
T COG4146 166 LVIAIGLAGILY--AIIGGLKAMAVSDTINGI--GLVIGGLL----VPIFALIALGKGSFAQGIEQITTVHAEKLNAIGG 237 (571)
T ss_pred HHHHHHHHHHHH--HHHcchhheeeccccchh--hHhhhhHH----HHHHHHHhhcCccHhhchhhhhccCHHHhcccCC
Confidence 345666899 999999999999999986 55555243 565443222 2 455666555554333222
Q ss_pred C-CCCchhhHHHHHH-HHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCc
Q psy14002 235 V-ETKDYGLWIEGML-LLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKN 312 (454)
Q Consensus 235 ~-~~~~~~~~~~~~~-~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~ 312 (454)
. ++-.+...++..+ ...+-.+.+|.+.||.+++||.+|.+|+.++++.+...-+....+.|+.+..++.|
T Consensus 238 ~~d~vPw~a~fTGll~vN~FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPGliafhlygd-------- 309 (571)
T COG4146 238 PTDPVPWGAAFTGLLLVNTFYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGLIAFHLYGD-------- 309 (571)
T ss_pred CCCCCcHHHHHHhHhhhheeeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhHHHHHHHhcc--------
Confidence 2 2222222222222 22333478999999999999999999999999999999999999999999988865
Q ss_pred cCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHHHH
Q psy14002 313 FTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGLGA 386 (454)
Q Consensus 313 ~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i~i 386 (454)
..+.|+++|.++++.+|..+.|++.+.++.|++||.++.+|+.+|.++.|+|++.+|||++|+ |.....+++
T Consensus 310 --L~~aDmaYP~LVn~VlPv~l~GFf~AvLFGAilStFN~fLNSa~Tlf~~diy~~I~k~na~e~eLv~~grkf~a~~Ai 387 (571)
T COG4146 310 --LPKADMAYPTLVNNVLPVPLVGFFGAVLFGAILSTFNGFLNSASTLFSMDIYRRIIKQNAEEQELVTVGRKFGAFIAI 387 (571)
T ss_pred --CCccccccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhHhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999998 777777777
Q ss_pred HHHHHH---hcCCchHHHHHHH
Q psy14002 387 VTAAVM---SSADAGILSSSSM 405 (454)
Q Consensus 387 ~a~~la---~~~~~~i~~l~~~ 405 (454)
.+.+++ .+.|+.++.+..-
T Consensus 388 ~sv~iaP~i~~apqGly~~~k~ 409 (571)
T COG4146 388 VSVLIAPWIANAPQGLYSWMKQ 409 (571)
T ss_pred HHHHHHHHHhcCcchHHHHHHH
Confidence 777776 4566677766544
No 18
>KOG2348|consensus
Probab=99.94 E-value=2.4e-27 Score=233.76 Aligned_cols=412 Identities=15% Similarity=0.143 Sum_probs=291.3
Q ss_pred HHHH-HHHHHHHHhhcccCC-CCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhH-HHHHHHHHHHHH
Q psy14002 12 IFYT-LVLAIGVWAGTKQKN-HGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVW-CQVPLGYSLALV 88 (454)
Q Consensus 12 ~y~~-~~l~ig~~~~r~~~~-~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~-~~~~~~~~l~~~ 88 (454)
..|+ +++..-|..+|-++. +++|.|-.||||+...+++...+++|..+++++-.++.+|++|.+| +||..|..+-..
T Consensus 20 ~~FA~~mi~vt~llKry~~e~~tsE~FtTA~rsVkTGLiasaVVSsWtW~sTlLtSa~~ayqyGV~G~~wYasga~vQIl 99 (667)
T KOG2348|consen 20 AAFAIVMILVTYLLKRYVGEVQTSEHFTTASRSVKTGLIASAVVSSWTWASTLLTSAGKAYQYGVSGSFWYASGATVQIL 99 (667)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhhhcccccccccceehhhhhhhhhhhHHHHhhccchhhhcccchhhhhccchhhhH
Confidence 3444 466666666665442 3899999999999999999999999999999999999999999975 788888887776
Q ss_pred HHHHHHhhhhhc--cCccCchHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhh
Q psy14002 89 VGALLFVKPMRE--ASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEP 166 (454)
Q Consensus 89 ~~~~~~~~~~r~--~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~ 166 (454)
++.. ++-..+| -+..|.-|..+.|||+..|...-+..+...+...+.-+.+.+..+ +.++|.+-..+.++..
T Consensus 100 ~FtV-lAie~Kr~APnAHT~~EiVkaR~G~~~H~vfL~yal~TNIlVtaMLL~gGSavi-----salTGmn~vAa~FLlP 173 (667)
T KOG2348|consen 100 LFTV-LAIEVKRKAPNAHTILEIVKARFGQASHGVFLFYALATNILVTAMLLLGGSAVI-----SALTGMNTVAACFLLP 173 (667)
T ss_pred HHHH-HHHhhhhcCCCcchhhhhhHhhcCcccceEEEhhhhhhhHHHHHHHHhCchhhh-----hhhccchhhhhhheee
Confidence 6664 4444444 399999999999999998866666666666677777778888888 9999999999999999
Q ss_pred hhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhe--eccCCCcchhHhhhhh---cCccCCCCCCCchh
Q psy14002 167 NMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAI--SNAQPYLKEPNMTIFS---KVDWLGTVETKDYG 241 (454)
Q Consensus 167 ~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~--~~~~gg~~~l~~~~~~---~~~~~~~~~~~~~~ 241 (454)
+-+++| |.+||+|+...||..+.+ ++.+. +++. ....+ .++.|.++.+.+.+.| ..|--++...+...
T Consensus 174 lGVvvY--Tl~GGlKaTFLtdy~Htv--Iv~ii-llvf--~f~vYtss~~iGSp~kvYDllke~~~~~Pv~Gn~qGsYlT 246 (667)
T KOG2348|consen 174 LGVVVY--TLFGGLKATFLTDYTHTV--IVYII-LLVF--LFVVYTSSKHIGSPGKVYDLLKEASKTHPVDGNYQGSYLT 246 (667)
T ss_pred eeEEEE--EecCcchhhhhhhhhhhh--HHHHH-HHHH--HHHhhhcccccCCcHHHHHHHHHHHhcCCCCCcccceEEE
Confidence 999999 999999999999999964 44443 3221 22222 2456889988888887 22222222211100
Q ss_pred ------hHHHH-HHHHHHhh-hcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-CCCccCC
Q psy14002 242 ------LWIEG-MLLLAFGG-IPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPA-GAFGIIARMVDWS-AIPTYGK 311 (454)
Q Consensus 242 ------~~~~~-~~~~~~~~-~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~-~~iG~~a~~~~p~-~~~~~~~ 311 (454)
..+.. .+.-.++. ++++.+||+..++| +..+.|+..++++-++.++..+ .-+|+.+.++.-+ ..+.|+.
T Consensus 247 m~s~~~~i~~iinliGnFgTVFvDngYw~kAIaA~-PasalkgY~lGGLaWfaVP~~~attmgL~~Lalen~p~fptyPd 325 (667)
T KOG2348|consen 247 MTSRDAAIFGIINLIGNFGTVFVDNGYWQKAIAAK-PASALKGYFLGGLAWFAVPWLMATTMGLSCLALENNPVFPTYPD 325 (667)
T ss_pred EEccCceEEEEEEeccCceeEEEcCchhHHHhccC-chhhccchhhcchHHHhHHHHHHHHhhhhhheeccCCCCCCCCC
Confidence 00000 11223443 58999999999998 5567789999999988766543 3367777766422 1234443
Q ss_pred cc--CccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHH
Q psy14002 312 NF--TAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFG 383 (454)
Q Consensus 312 ~~--~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~ 383 (454)
+. .+.+...++|+-...+++..-+...+.-++.|..|-.++-+.+.||.++.||||.|+||++|.| |.+.++
T Consensus 326 p~ss~q~s~Glvlp~aaiAlMGk~Ga~a~llmlFMAvTSA~SaELIAvSSvfTYDIYr~Yi~PrAsGkell~~sh~avi~ 405 (667)
T KOG2348|consen 326 PVSSKQVSEGLVLPYAAIALMGKNGAAAGLLMLFMAVTSATSAELIAVSSVFTYDIYRNYIRPRASGKELLYTSHVAVII 405 (667)
T ss_pred ccchhhhccCCCChHHHHHHhcccchHHHHHHHHHHHhcccchhheeehhhhehHHHHhhcCCccCcceeEEEeeeeeeh
Confidence 22 2334567888887777776544444555788999999999999999999999999999999999 556666
Q ss_pred HHHHHHHHHhcC--Cc-hHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchh
Q psy14002 384 LGAVTAAVMSSA--DA-GILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAE 438 (454)
Q Consensus 384 i~i~a~~la~~~--~~-~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~ 438 (454)
+|+.--.+|... .+ ++- ..+.+-.........|..+.+.||+-|.-+.+.|...
T Consensus 406 Fg~~M~~~av~l~y~gismg-~iy~~mGili~~AV~pit~~l~~kkmn~~~~iv~~~l 462 (667)
T KOG2348|consen 406 FGVAMGGLAVGLNYGGISMG-WIYLFMGILIGPAVFPITLTLLWKKMNKYGAIVGPPL 462 (667)
T ss_pred hHHHHHhHhhhhhhcceeHH-HHHHHHHHHhcchhHhHHHHHHHHHhhhhhEeecCcc
Confidence 665554454322 21 333 3333344444445555667777788887777766543
No 19
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.21 E-value=9.5e-10 Score=107.02 Aligned_cols=309 Identities=11% Similarity=0.015 Sum_probs=195.4
Q ss_pred HHHHHHHHhhccccccccchHHHh--cchhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHH
Q psy14002 48 GVLTLTATWVGGGYINATAEALFT--TGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLP 125 (454)
Q Consensus 48 ~~~s~~at~~sa~~~~G~~~~~y~--~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~ 125 (454)
.++..+.+.+||+...|..-+.|. +|..+.+..+-..+-+.+.+....+.-||.+.++-.|.+++-.|+...++....
T Consensus 8 ~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~ 87 (349)
T COG3949 8 WAFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDII 87 (349)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHH
Confidence 456677799999999997766665 666666544445555566777788888999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14002 126 ALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCL 205 (454)
Q Consensus 126 ~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~ 205 (454)
.++..+.-....+.|.|..+ ++.+|+|+|.+.++...++.+- -..++.++..-.+.+- +.+++.. .+..
T Consensus 88 iif~lf~~~vVM~AGags~~-----~e~~~lP~wiGali~i~~v~i~--lfl~~vegi~tvn~iI--~P~LIi~-l~~v- 156 (349)
T COG3949 88 IIFFLFSTAVVMLAGAGSLL-----EEMFGLPYWIGALIIILLVLIL--LFLGRVEGIITVNGII--TPFLIII-LVLV- 156 (349)
T ss_pred HHHHHHHHHHHHhccchhHH-----HHHhCccHHHHHHHHHHHHHHH--HHHhcccceeeeheeH--HHHHHHH-HHHH-
Confidence 77777776777777888899 9999999999966666555554 5566677766555555 4555544 2211
Q ss_pred hhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHH-HHHHhhhcchhHHHHH-hccCCHHHHHHHHHHHHHH
Q psy14002 206 SFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGML-LLAFGGIPWQSYFQRV-LSLRSTKAAYHLSTLSALL 283 (454)
Q Consensus 206 ~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~qr~-~aaks~~~ar~~~~~~~~~ 283 (454)
.-...+ ++.++..+. +.... +.|..... ..+++..+.|.+.... -..|++|++.++...+++.
T Consensus 157 -~~~~~f---~~~~~~a~~---------~~~~~--~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglI 221 (349)
T COG3949 157 -TLSFQF---TNLGNAAQI---------VLTKQ--GNWKASAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLI 221 (349)
T ss_pred -HHHHHH---hhccchhhh---------cCCcC--CChHHHHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHH
Confidence 111111 111111111 11111 12322221 3334444444444333 4567888889988888877
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHH-HHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhh
Q psy14002 284 CFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLV-LKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFT 362 (454)
Q Consensus 284 ~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l-~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~ 362 (454)
.....+... ..+.+ .+|+ .. +...|.+ +.+.+||...-.+.+.++.++.+|.-+.+.+.++.+.
T Consensus 222 lgvl~~l~n-lsLi~--~~~~----------v~--~~dIP~l~i~~~~~~~i~lvm~vIi~~~IytT~vg~iy~l~~r~~ 286 (349)
T COG3949 222 LGVLLFLIN-LSLIA--LYDK----------VV--NYDIPLLTIAKNFSPLIGLVMSVIIWLEIYTTTVGLIYGLASRLT 286 (349)
T ss_pred HHHHHHHHH-HHHHh--hcch----------hh--ccCCcHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 655443322 23332 2322 12 2334443 5567887888888888999999998877777666554
Q ss_pred HHHHHhhcCCCCCCCeehhHHHHHHHHHHHhcCCchHHHHHHH
Q psy14002 363 RNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSM 405 (454)
Q Consensus 363 ~Di~~~~~~~~~s~~Ri~~~~i~i~a~~la~~~~~~i~~l~~~ 405 (454)
.-.-+|+ +...+++.+++..++..+-.+++.-.+-
T Consensus 287 s~~~~~~--------~~i~~iilvi~~~~s~~Gf~~LI~~lYp 321 (349)
T COG3949 287 SFFPRRY--------WIIAAIILVIAYPLSFFGFINLIAKLYP 321 (349)
T ss_pred ccCCchH--------HHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 4333332 6777888888888888776566554433
No 20
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.79 E-value=5.7e-06 Score=85.21 Aligned_cols=343 Identities=12% Similarity=0.058 Sum_probs=177.9
Q ss_pred hHHHHHHHHHHhhccccccccchHHHhcchhHHH--HHHHHHHHHHHHHHHHhhhhhc-cCccCchHHHHHhhcCcchhH
Q psy14002 45 LFVGVLTLTATWVGGGYINATAEALFTTGLVWCQ--VPLGYSLALVVGALLFVKPMRE-ASYVTMLDPFQQAYGNRIGGL 121 (454)
Q Consensus 45 ~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~--~~~~~~l~~~~~~~~~~~~~r~-~~~~T~~d~l~~Ryg~~~~~~ 121 (454)
.+-..+.+++|.+|++ .++.|..+...|+.... ..+.| ......++.+++...+ .+..++.|..++.+|++.+.+
T Consensus 5 ~~~~~~li~GTaIGAG-mLaLP~~~~~~Gf~~~~~~l~~~w-~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~ 82 (394)
T PF03222_consen 5 ILGGVLLIAGTAIGAG-MLALPIATAGAGFLPSLILLLIAW-PLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIV 82 (394)
T ss_pred HHHHHHHHHHccHhHH-HHHHHHHHHhCchHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHH
Confidence 3445566778888875 56778887777765432 22333 2333456677776544 478999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhccc-cccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHH-HHHHHHH
Q psy14002 122 LFLPALCGDVFWIASVLSSLGSVVDTLC-LSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGM-LLLAFGG 199 (454)
Q Consensus 122 ~~~~~~~~~~~~~~~ql~~~g~i~~~~~-~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~-~~il~~~ 199 (454)
..+...+.....+.+-+.+.|.+++.+. .+.-.+++.+.+..+..++.... ... |.|.+ |.++.. +..+++.
T Consensus 83 ~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~i--v~~-g~~~v---~~~n~~lv~~~i~~ 156 (394)
T PF03222_consen 83 IGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGI--VYF-GTKAV---DRINRVLVFGMIIS 156 (394)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH--HHh-hHHHH---HHHHHHHHHHHHHH
Confidence 8877777766777888888888882221 11113455677666665555544 434 45544 555532 1122222
Q ss_pred HHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHH-HH-HHHHHHhh-hcchhHHHHHhccCCHHHHHHH
Q psy14002 200 IPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWI-EG-MLLLAFGG-IPWQSYFQRVLSLRSTKAAYHL 276 (454)
Q Consensus 200 ~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~p~~~qr~~aaks~~~ar~~ 276 (454)
... +..... +.++ .+.+.+ .+..+..+...+ .. .+...++. ..-|. ..|++ .+|+|+.||+
T Consensus 157 -~~~---l~~~~~---p~~~--~~~L~~-----~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPs-l~~~~-~~d~~k~~~a 220 (394)
T PF03222_consen 157 -FII---LVVYLI---PHWN--PSNLLD-----APPSPSDWSYILPALPVLVFSFGFHNIVPS-LVKYL-GGDPKKIRKA 220 (394)
T ss_pred -HHH---HHHHHh---hhcC--HHHhhc-----cccccccHHHHHHHHHHHHHHHHHHhhhHH-HHHHh-CccHHHHHHH
Confidence 111 111111 1111 011111 001112222122 11 12222332 12233 34555 4789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHh
Q psy14002 277 STLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILS 356 (454)
Q Consensus 277 ~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a 356 (454)
..++..+...+++.+.+.- .+ .+-++..++.. .++.|.+.....+-...-.+++..+.-.-.+.|+.++.=+.-++
T Consensus 221 i~~Gs~i~lv~yl~w~~~~-lg-~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lg 296 (394)
T PF03222_consen 221 IIIGSLIPLVMYLLWVFSI-LG-SLPREQFAEAI--AQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLG 296 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hh-cCCHHHHHHHH--hcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887666655443211 11 11111000000 01122233334443334456666666666677788777777777
Q ss_pred hhhhhhHHHHHhhcCCCCCCCeeh-hHHHHHHHHHHHhcCCchHHHHHHHHHH--hhhhhcccccc
Q psy14002 357 SSSMFTRNIYKLSFRPKLTPNWVA-FFGLGAVTAAVMSSADAGILSSSSMFTR--NIYKLSFRPKV 419 (454)
Q Consensus 357 ~ss~l~~Di~~~~~~~~~s~~Ri~-~~~i~i~a~~la~~~~~~i~~l~~~~~~--~~~~~~f~p~~ 419 (454)
....+ +|..+. +|...+|.. .++.-+..+.+|...|+..+....+++. .+..++.|+.+
T Consensus 297 l~d~l-~d~~k~---~~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m 358 (394)
T PF03222_consen 297 LFDFL-ADLFKL---KNNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALM 358 (394)
T ss_pred HHHHH-HHHHcC---CccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHH
Confidence 66654 566543 222222443 3334445677888888555555555442 22334555443
No 21
>TIGR00909 2A0306 amino acid transporter.
Probab=98.69 E-value=8.8e-06 Score=84.67 Aligned_cols=319 Identities=13% Similarity=-0.000 Sum_probs=164.9
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNR 117 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~ 117 (454)
.|+++.+......+++.+|++.+..........|....+ +.++ .+.....+..+++..++. +.-...++.++.+|+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~-~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 80 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLA-GLTALFIALVYAELAAMLPVAGSPYTYAYEAMGEL 80 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcH
Confidence 478899988888888888877666554444444544332 2222 222233445555555444 3346789999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC---C--Cchh-----------hhhhhhhhhhhhhchhcchhh
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA---I--SNAQ-----------PYLKEPNMTIFSKIDWLGTVE 181 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g---i--~~~~-----------~i~i~~~v~~~Y~~t~~GGl~ 181 (454)
...+.+....+......+.+..+.+..+ +.+++ . +.+. ...+...+...+ ....|.|
T Consensus 81 ~g~~~gw~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--l~~~g~~ 153 (429)
T TIGR00909 81 TAFIIGWSLWLEYGVAVAAVAVGWGGYL-----QEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTY--ILYLGAK 153 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHH--HHHhCcH
Confidence 8878777777666555666666655554 32221 1 2111 011223334444 5566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHH
Q psy14002 182 TKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYF 261 (454)
Q Consensus 182 av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 261 (454)
...+.+.+-. .+.++. +++. +.....+ ...+ +. .+ ..+.+...+........+.+.......
T Consensus 154 ~~~~~~~v~~--~~~i~~-l~~~--~~~~~~~--~~~~----~~---~~----~~~~~~~~~~~~~~~~~~af~G~e~~~ 215 (429)
T TIGR00909 154 ESGKVNDILV--VLKVAA-LLLF--AALGAIH--FASN----NY---TP----FMPMGFGGVGAATALVFFAFIGFEAIS 215 (429)
T ss_pred HHHHHHHHHH--HHHHHH-HHHh--hhHHHhh--CcHH----hc---CC----CCCCcHHHHHHHHHHHHHHHhhHHHHH
Confidence 7777776663 233333 2211 1111111 0000 11 01 111222223322222233333444444
Q ss_pred HHHhccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHH
Q psy14002 262 QRVLSLRST-KAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLG 340 (454)
Q Consensus 262 qr~~aaks~-~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~ 340 (454)
+-.-+.||+ |+.+|+...+......+++...+ ......|. .+..+.+..+.....+..+++..-++.+
T Consensus 216 ~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i 284 (429)
T TIGR00909 216 TAAEEVKNPERDIPKAIILSLIVVTLLYVLVAA---VILGAVPW--------RQLAGSTAPLSLVGYDLGQGIGGLILTA 284 (429)
T ss_pred hhHHhccCccccccHHHHHHHHHHHHHHHHHHH---HHhcCcCH--------HHhCCCCcHHHHHHHHhCchHHHHHHHH
Confidence 444456664 67899998887776666554332 11122221 1112233445556666777888777777
Q ss_pred HHHHHHHhhhhhHHHhhhhhhh---HHHHH-hhc-CCCCCCC--eehhHHHHHHHHHHHhcC
Q psy14002 341 AVTAAVMSSADAGILSSSSMFT---RNIYK-LSF-RPKLTPN--WVAFFGLGAVTAAVMSSA 395 (454)
Q Consensus 341 ~~laA~mST~ds~l~a~ss~l~---~Di~~-~~~-~~~~s~~--Ri~~~~i~i~a~~la~~~ 395 (454)
.++.+..++..+.+.+.+-.+- +|=.- +.+ |.|.+.+ ..++++.++++..+....
T Consensus 285 ~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~ 346 (429)
T TIGR00909 285 GAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLV 346 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 7787888888887777766543 34111 111 1121112 334555566666665443
No 22
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.65 E-value=2.1e-05 Score=81.12 Aligned_cols=336 Identities=11% Similarity=0.000 Sum_probs=169.9
Q ss_pred HHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhh----h--hhccCccCchHHHHHhhcCcchhHH
Q psy14002 49 VLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVK----P--MREASYVTMLDPFQQAYGNRIGGLL 122 (454)
Q Consensus 49 ~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~----~--~r~~~~~T~~d~l~~Ryg~~~~~~~ 122 (454)
.+++.+|.+|++. +..|..+-+.|+-.. .++..++.+ ..++.++ . .++....++.|+.++.+|+..+.+.
T Consensus 9 ~~~l~gt~IGaGi-L~LP~~ag~~G~i~~--li~~l~~~p-l~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 9 MLGLYGTAIGAGV-LFLPIQAGLGGLWVL--VLMAIIAYP-LTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhCHHHHH--HHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHH
Confidence 4567788888765 556666555553221 122222222 2233333 2 2333479999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhccccccccC--CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHH
Q psy14002 123 FLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA--ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGI 200 (454)
Q Consensus 123 ~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g--i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~ 200 (454)
++...+.....+.+...+.+..++.+. +..++ .++..-..+..+++..| ....|.|.+.+.+-+- +..+++.
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl-~~~~~~~~p~~~i~~lilv~il~~--iv~~G~~~i~r~~~il--~~~~ii~- 158 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFL-VNQLGTAPPLRGLLSLALILILVA--IMSFGEKLLFKIMGPL--VFPLVLI- 158 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHH--HHHhcHHHHHHHHHHH--HHHHHHH-
Confidence 888777776666666666666552222 22233 23333344445555578 8999999998887777 3333333
Q ss_pred HHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCch-hhHHHH-HHHHHHhhh-cchhHHH---HHhccCC--HHH
Q psy14002 201 PWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDY-GLWIEG-MLLLAFGGI-PWQSYFQ---RVLSLRS--TKA 272 (454)
Q Consensus 201 ~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-~~p~~~q---r~~aaks--~~~ 272 (454)
+++ +.+....+ -..+++.+ .|..+ ... ..|.+. ...+.++.. .-|++.+ |-+..|| +|.
T Consensus 159 l~~---l~~~lip~-~~~~~L~~-----~p~~~----~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k 225 (397)
T TIGR00814 159 LVL---LSLYLIPH-WNGANLTT-----FPSFN----GFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERK 225 (397)
T ss_pred HHH---HHHHHHHH-cCHHHHhc-----CCccc----chHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHH
Confidence 221 11111111 11222211 11111 111 122222 122233321 2344432 3354234 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCcc-chHHHHHHHhCchHHHHHHHHHHHHHHHhhhh
Q psy14002 273 AYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESN-SVLPLVLKELTPNWVAFFGLGAVTAAVMSSAD 351 (454)
Q Consensus 273 ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~-~~~p~l~~~~lp~~l~gl~~~~~laA~mST~d 351 (454)
+||....+..+...+++.+.+.=+. .+-|++.. +..+++ ..+-++.++.-.|++.-+...-...|+.++.-
T Consensus 226 ~~k~i~~~~~i~~~~y~~~~~s~~~--~l~~~~~~------~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFl 297 (397)
T TIGR00814 226 CLRIMKGASLILVATVMFFVFSCVL--SLSPAEAV------AAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFF 297 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHH------HHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999988888777666554432111 11122100 001111 12334444445566665555445567777777
Q ss_pred hHHHhhhhhhhHHHHHhhcC---CCCCCC--eehhHHHHHHHHHHHhcCCchHHHHHH-HHHHhhhhhccc
Q psy14002 352 AGILSSSSMFTRNIYKLSFR---PKLTPN--WVAFFGLGAVTAAVMSSADAGILSSSS-MFTRNIYKLSFR 416 (454)
Q Consensus 352 s~l~a~ss~l~~Di~~~~~~---~~~s~~--Ri~~~~i~i~a~~la~~~~~~i~~l~~-~~~~~~~~~~f~ 416 (454)
+..++..--+ +|+..+..+ ++.++| +..+.++..+....+...+.+++++.. +.++.+...+|.
T Consensus 298 G~~lg~~e~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~ 367 (397)
T TIGR00814 298 GHYLGAREGL-NGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFL 367 (397)
T ss_pred HHHHhHHHHH-HHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHH
Confidence 7777666654 455532222 223444 223333444444444444449999887 555555544433
No 23
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.64 E-value=1.5e-05 Score=83.26 Aligned_cols=280 Identities=14% Similarity=-0.008 Sum_probs=148.9
Q ss_pred HHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHHHHHHH
Q psy14002 54 ATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFW 133 (454)
Q Consensus 54 at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~ 133 (454)
++.++.+.+....+.+.++|++=.|..+-..+..++.-..-+ |+-.....++.|..++|||++......+...+..+.+
T Consensus 45 ~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~-RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~ 123 (439)
T PRK00701 45 VGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSA-KLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMAT 123 (439)
T ss_pred hheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHh-HhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHH
Confidence 456888888888888889999877743322222222222222 3323345778999999999988766666677777888
Q ss_pred HHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec
Q psy14002 134 IASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISN 213 (454)
Q Consensus 134 ~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~ 213 (454)
...|+.|.+..+ +.++|+|.+.++.+..+.+..+.....+|.|-.=.. +.. +++...++ .....+.
T Consensus 124 ~~~e~~G~a~al-----~ll~gip~~~~v~i~~~~~~~~l~l~~~~y~~~E~i--~~~-----lv~~m~l~--f~~~~~~ 189 (439)
T PRK00701 124 DLAEVIGAAIAL-----KLLFGIPLLQGALITALDTFLILMLQRRGFRPLEAI--IGG-----LLLVIAAA--FIVELFL 189 (439)
T ss_pred HHHHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHHHHHHHHhcCccHHHHH--HHH-----HHHHHHHH--HHHHHhe
Confidence 899999999888 888999998888777665444300235665544322 221 11111111 1111122
Q ss_pred cCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchh--HHHHHhccCC------------HHHHHHHHHH
Q psy14002 214 AQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQS--YFQRVLSLRS------------TKAAYHLSTL 279 (454)
Q Consensus 214 ~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~qr~~aaks------------~~~ar~~~~~ 279 (454)
..+++.++.+.+. |++ +..+..+. + ......+|....|+ ++|..+..+. .|..|+-...
T Consensus 190 ~~P~~~~v~~Gl~--P~~-~~~p~~~~--~--~~~iaiiGttv~P~~~f~~ss~v~~k~~~~~~~~~~~~l~~~r~Dt~~ 262 (439)
T PRK00701 190 AQPDWAAVLKGFI--PSS-EILPNPEA--L--YLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREALRFTRIDSAI 262 (439)
T ss_pred eCCCHHHHhcccC--CCC-cCCCCccH--H--HHHHHHHHHHHhHHHHHHHHHHHHhccccCChHhHHHHHHHHHHHHHH
Confidence 2255666554422 110 00111111 1 11223345444453 4554443221 1222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhh
Q psy14002 280 SALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSS 359 (454)
Q Consensus 280 ~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss 359 (454)
+..+...+..... -..+..++|+. . .+..+.+ .....+++.++++...++..++++|..|+.-..-.+...
T Consensus 263 g~~i~~li~~ai~--v~~A~~l~~~g-----~-~~~~~~~-~~a~~L~p~~G~~a~~lFaiGL~aag~sS~i~~~~a~~~ 333 (439)
T PRK00701 263 ALTIAGFVNAAML--ILAAAAFHASG-----H-TDVADIE-DAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQI 333 (439)
T ss_pred HHHHHHHHHHHHH--HHHHHHhccCC-----C-CCcCCHH-HHHHHHHHHHhHHHHHHHHHHHHHhHhHHHhHHHHHHHH
Confidence 5444444443333 33444455531 0 0011222 223345667788888888999999977765553333333
Q ss_pred hhhHHH
Q psy14002 360 MFTRNI 365 (454)
Q Consensus 360 ~l~~Di 365 (454)
+.++.
T Consensus 334 -v~~~~ 338 (439)
T PRK00701 334 -VMEGF 338 (439)
T ss_pred -HHHHH
Confidence 34554
No 24
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.59 E-value=1.9e-05 Score=80.32 Aligned_cols=265 Identities=12% Similarity=0.079 Sum_probs=148.0
Q ss_pred hHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhh
Q psy14002 67 EALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVD 146 (454)
Q Consensus 67 ~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~ 146 (454)
..+.++|+.=.|..+-..+..+++- -.+-|+--....++.|.+++|||++......+...+..+.+...|+.+.+..+
T Consensus 6 ~aGA~~Gy~Llw~lll~~~~~~~~q-~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al- 83 (358)
T PF01566_consen 6 QAGAQYGYSLLWVLLLSNLLKYVFQ-EMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIAL- 83 (358)
T ss_pred HhHHHHCHHHHHHHHHHHHHHHHHH-HHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3445667766664322222222222 23334433456899999999999998877777788888888999999999998
Q ss_pred ccccccccCCCchhhhhhhhhhhhhhhchh--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhh
Q psy14002 147 TLCLSFPFAISNAQPYLKEPNMTIFSKIDW--LGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMT 224 (454)
Q Consensus 147 ~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~--~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~ 224 (454)
+.++|+|.+....+..+.+... .. .|+.|-+=. .+..+..+|.++ .+ .......+.+.++.+.
T Consensus 84 ----~ll~g~~~~~~~~~~~~~~~~l--l~~~~~~y~~~E~--~~~~lv~~m~l~-f~------~~~~~~~p~~~~~~~g 148 (358)
T PF01566_consen 84 ----NLLFGIPLWIWVLLVAVIAILL--LWLSSGGYRRLER--ILKVLVAVMVLA-FL------IAAFIVHPDWGEVARG 148 (358)
T ss_pred ----HhhcCCCcHHHHHHHHHHHHHH--HHHHhccchHHHH--HHHHHHHHHHHH-HH------HHHHhcchhHHHHhhh
Confidence 8888999988888888777766 55 777665432 222111122121 11 1111112444444433
Q ss_pred hhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchh--HH------HHHhcc----CC--HHHHHHHHHHHHHHHHHHHHH
Q psy14002 225 IFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQS--YF------QRVLSL----RS--TKAAYHLSTLSALLCFSMAIP 290 (454)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~------qr~~aa----ks--~~~ar~~~~~~~~~~~~~~~~ 290 (454)
... | +.+..+ .+ ......+|....|+ ++ +|-... |+ .|..|+-...+......+...
T Consensus 149 ~~~--P---~~p~~~---~~-~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~a 219 (358)
T PF01566_consen 149 LVV--P---SIPGPG---SL-LFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVA 219 (358)
T ss_pred ccC--C---CCcchh---HH-HHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1 111111 11 11122244333332 22 333333 12 345666566665454444444
Q ss_pred HHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCc-hHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHh
Q psy14002 291 AGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTP-NWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKL 368 (454)
Q Consensus 291 ~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp-~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~ 368 (454)
+.. ..+..++|+. .+..+.++ .-......++ +|...++..++++|..|+.-....+.+..+ .|..+.
T Consensus 220 i~i--~~A~~l~~~~-------~~~~~~~~-~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~-~~~~~~ 287 (358)
T PF01566_consen 220 ILI--VAAAVLYPGG-------SEVETAAQ-AAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVL-ADFLGW 287 (358)
T ss_pred HHH--HHHHHhcccc-------cchhhHHH-HHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceeh-HhhhcC
Confidence 333 3344444431 11122222 2345567788 799999999999999999988776665554 677654
No 25
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.46 E-value=0.00022 Score=71.38 Aligned_cols=140 Identities=14% Similarity=-0.007 Sum_probs=100.6
Q ss_pred cChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHH
Q psy14002 43 VGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLL 122 (454)
Q Consensus 43 l~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~ 122 (454)
++.......+..+.+|.+........+.+.| ++....+...+...+..+...+..||.+..|+.|+.++++||..+++.
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii 80 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKII 80 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHH
Confidence 3445566666777777766666666666665 333333333344444556777788888999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhcccccc-ccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 123 FLPALCGDVFWIASVLSSLGSVVDTLCLSF-PFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 123 ~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~-~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
.....+..+...+..+...+..+ +. +++-.+...+.....++..| ...+|+++.+++..+-
T Consensus 81 ~~~~~l~~l~~~~~~lr~~~~~i-----~~~~lp~TP~~~i~~~~ll~~~y--~a~~G~e~i~R~~~~~ 142 (320)
T PF03845_consen 81 NLLYILYFLLISALVLREFSEFI-----KTYLLPETPIWVIILLFLLVAAY--AARKGIEVIARVAEIL 142 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhcCcCCHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHH
Confidence 77777777777888888888776 44 45555566677778888999 9999999999844444
No 26
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.43 E-value=5.1e-05 Score=77.73 Aligned_cols=315 Identities=11% Similarity=-0.041 Sum_probs=151.3
Q ss_pred HHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcchhHHHHHHHHHHH
Q psy14002 54 ATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRIGGLLFLPALCGDV 131 (454)
Q Consensus 54 at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~ 131 (454)
++.+|++ .++.|+.....|....+ ..+...+.....++.+++..+|. +..+..|+.++.+|+..+.+..+...+...
T Consensus 8 gt~IGaG-Il~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~ 86 (381)
T TIGR00837 8 GTTIGAG-MLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLLFVLY 86 (381)
T ss_pred hhhHhHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 3444443 33445554455543222 22222233334556677666555 467899999999999988777665555444
Q ss_pred HHHHHHHHhhhHhhhcccccccc--CCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy14002 132 FWIASVLSSLGSVVDTLCLSFPF--AISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPF 209 (454)
Q Consensus 132 ~~~~~ql~~~g~i~~~~~~~~~~--gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~ 209 (454)
....+...+.+..++.+. +... +.+.+... +...+++.| ....|.|.+.+.+.+- +...+.. +++ +..
T Consensus 87 ~~~~ay~~~~~~~l~~~~-~~~~~~~~~~~~~~-~~~~~v~~~--l~~~G~~~~~~v~~i~--~~~~l~~-l~~---~ii 156 (381)
T TIGR00837 87 ILTYAYISGGGSILSRLI-GEYFGFPWSARAIV-LIFTVLFGS--FVWLSTSAVDRITRVL--IFGKIIA-FAL---VFS 156 (381)
T ss_pred HHHHHHHHccHHHHHHHH-HHhcCCCccHHHHH-HHHHHHHHH--HHHhchhHHHHHHHHH--HHHHHHH-HHH---HHH
Confidence 444444444454441111 2111 23333332 333344556 7777887666555554 2232222 211 111
Q ss_pred heeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHH--HHHHHHhhh-cchhHHHHHhccCCHHHHHHHHHHHHHHHHH
Q psy14002 210 AISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEG--MLLLAFGGI-PWQSYFQRVLSLRSTKAAYHLSTLSALLCFS 286 (454)
Q Consensus 210 ~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~ 286 (454)
....+ ...+ +.. +. +. ++......... .....++.- .-|... + ...||+|+.+|+..++......
T Consensus 157 ~~~~~-~~~~----~~~---~~-~~-~~~~~~~~~~a~~~~~~~fg~~~~i~~~~-~-~~~~~~k~i~raii~g~~i~~~ 224 (381)
T TIGR00837 157 GLLPH-VKGD----LLL---DV-AL-DTSYWPYILSALPVCLTSFGFHGNVPSLY-K-YYDGNVKKVKKSILIGSAIALV 224 (381)
T ss_pred HHHhh-ccHH----HHh---cC-cc-ccccHHHHHHHHHHHHHHHHcccccHHHH-H-HhccCHHHHHHHHHHHHHHHHH
Confidence 11111 1111 111 11 00 11121111111 111222221 122221 1 2346799999999998888777
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHh-CchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHH
Q psy14002 287 MAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKEL-TPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNI 365 (454)
Q Consensus 287 ~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~-lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di 365 (454)
+++.+.. ......|.. +.....+..+.+..+....++. -+++...++......|+.++.-+..++.+.. .+|.
T Consensus 225 lY~l~~~---~~~g~~~~~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~-l~~~ 298 (381)
T TIGR00837 225 LYILWQL---ATMGNLPRS--EFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY-LADL 298 (381)
T ss_pred HHHHHHH---HHhCCCCHH--HHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 7755432 222222220 0000000111223334444443 3456777777777888888888888887765 5666
Q ss_pred HHhhcCCCCCCCeehhHHHHHHHHHHHhcCCchH
Q psy14002 366 YKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGI 399 (454)
Q Consensus 366 ~~~~~~~~~s~~Ri~~~~i~i~a~~la~~~~~~i 399 (454)
+++. + +...|....++..+..+.+|...|+.-
T Consensus 299 ~~~~-~-~~~~~~~~~~~~~~~pl~~a~~~p~~~ 330 (381)
T TIGR00837 299 FKFD-D-SKKGRFKTGLLTFLPPLVFALFYPEGF 330 (381)
T ss_pred hCCC-c-ccCCCchhhhhhHHhHHHHHHHhhHHH
Confidence 6552 1 111222234666778888888777433
No 27
>PRK10483 tryptophan permease; Provisional
Probab=98.43 E-value=0.00025 Score=73.13 Aligned_cols=346 Identities=10% Similarity=-0.028 Sum_probs=171.6
Q ss_pred ChHHHHHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhc-cCccCchHHHHHhhcCcchhH
Q psy14002 44 GLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMRE-ASYVTMLDPFQQAYGNRIGGL 121 (454)
Q Consensus 44 ~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~-~~~~T~~d~l~~Ryg~~~~~~ 121 (454)
+.+-..+-+.+|.+|++ .++.|-.....|+.... ..+...+.+...++.+.+.--+ .+..++...-|+-.|+..+.+
T Consensus 12 ~~~g~~~iIaGT~IGaG-MLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g~~i 90 (414)
T PRK10483 12 SLLGGVVIIGGTIIGAG-MFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVV 90 (414)
T ss_pred cHHHHHHHHHHchHhHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHH
Confidence 34444555667777765 56777777777774432 2233333344456666665333 456788888899999988766
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccccc-----CCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHH
Q psy14002 122 LFLPALCGDVFWIASVLSSLGSVVDTLCLSFPF-----AISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLA 196 (454)
Q Consensus 122 ~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~-----gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il 196 (454)
..+..++....-+.+-+.+.|.++ +..+ ++|.+.+.++..++.... . ..|.|.+-+.+.+- +..+
T Consensus 91 ~~~s~lfl~Y~Ll~AYisg~g~il-----~~~l~~~~~~i~~~~~~llF~~~~~~i--v-~~gt~~vd~~n~~l--~~~~ 160 (414)
T PRK10483 91 NGISIAFVLYILTYAYISASGSIL-----HHTFAEMSLNVPARAAGFGFALLVAFV--V-WLSTKAVSRMTAIV--LGAK 160 (414)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHH-----HHHHHhcCCCCcHHHHHHHHHHHHHHH--H-HhhhhHHHHHHHHH--HHHH
Confidence 555444444444566677888888 4443 557777777777666654 3 33567665544443 2223
Q ss_pred HHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCch-hhHHHH-HHHHHHhhh-cchhHHHHHhccCCHHHH
Q psy14002 197 FGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDY-GLWIEG-MLLLAFGGI-PWQSYFQRVLSLRSTKAA 273 (454)
Q Consensus 197 ~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-~~p~~~qr~~aaks~~~a 273 (454)
++. .++. + .....+ -..+.+.+. ++ ++ +..+ ..|.+. .+...+++- .-|.. .|++. +|+|+.
T Consensus 161 i~~-f~~~--~-~~l~~~-i~~~~L~~~-----~~-~~--~~~~~~~~~alPvl~~SFgfh~iIPsl-~~y~~-~d~~ki 225 (414)
T PRK10483 161 VIT-FFLT--F-GSLLGH-VQPATLFNV-----AE-SN--ASYAPYLLMTLPFCLASFGYHGNVPSL-MKYYG-KDPKTI 225 (414)
T ss_pred HHH-HHHH--H-HHHHhh-cCHHHHhcc-----cc-cc--chhHHHHHHHHHHHHhhccCCCcchHH-HHHhC-cCHHHH
Confidence 222 1111 1 111111 111111111 11 00 0111 122221 122233331 23444 56665 678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhh
Q psy14002 274 YHLSTLSALLCFSMAIPAGAFGIIARMVDWS-AIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADA 352 (454)
Q Consensus 274 r~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~-~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds 352 (454)
||+..++..+-..+++++.+.-+.. .|+ ...+.. .++++-|...-.+..+.-.+++..+.-.-...|+.++.=+
T Consensus 226 r~~I~iGs~Iplv~yl~W~~~~lg~---l~~~~~~~~~--~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlG 300 (414)
T PRK10483 226 VKCLVYGTLMALALYTIWLLATMGN---IPRPEFIGIA--EKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLG 300 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHH--HcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888777766554322111 121 000000 0111111111222222333455544444445566666666
Q ss_pred HHHhhhhhhhHHHHHhhcCCCCCCC-eeh-hHHHHHHHHHHHhcCCchHHHHHHHHH--HhhhhhcccccccccccC
Q psy14002 353 GILSSSSMFTRNIYKLSFRPKLTPN-WVA-FFGLGAVTAAVMSSADAGILSSSSMFT--RNIYKLSFRPKVDLTPDE 425 (454)
Q Consensus 353 ~l~a~ss~l~~Di~~~~~~~~~s~~-Ri~-~~~i~i~a~~la~~~~~~i~~l~~~~~--~~~~~~~f~p~~~~~~~k 425 (454)
.-++...-+ +|..| .+.+.+ |.. -++.-+..+.+++..|+.-+.-..+++ ..+.....|+.+.-..+|
T Consensus 301 v~LGL~d~l-~D~~k----~~~~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk 372 (414)
T PRK10483 301 VTLGLFDYL-ADLFG----FDDSAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRK 372 (414)
T ss_pred HHHHHHHHH-HHHhC----CCCccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666654443 35443 333222 443 344556788889988855444444433 233345555554433333
No 28
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.42 E-value=0.00046 Score=72.43 Aligned_cols=107 Identities=12% Similarity=-0.043 Sum_probs=76.9
Q ss_pred cCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCc
Q psy14002 39 AGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNR 117 (454)
Q Consensus 39 agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~ 117 (454)
=.|+++.+.+.+..+++.+|++-+++........|-...+..+...+.....++-+++.-++. ..-...++.++.||+.
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~ 89 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRW 89 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcH
Confidence 369999999999999999999999988777767776544322223334444556666665543 3346789999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhh
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVV 145 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~ 145 (454)
...+......+......+.+..+.+..+
T Consensus 90 ~gf~~gw~~~~~~~~~~~~~~~~~~~~l 117 (452)
T TIGR01773 90 AGFTIGWLYWWFWVLVIPLEAIAAAGIL 117 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777777666666677777777776
No 29
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.41 E-value=0.00018 Score=73.04 Aligned_cols=141 Identities=11% Similarity=0.004 Sum_probs=93.3
Q ss_pred ccChHHHHHHHHHHhhccccccccchHHHh-cchhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchh
Q psy14002 42 NVGLFVGVLTLTATWVGGGYINATAEALFT-TGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGG 120 (454)
Q Consensus 42 sl~~~~~~~s~~at~~sa~~~~G~~~~~y~-~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~ 120 (454)
+++.+...+...++.+|++ ++..|+...+ .|-++....+...+...+.++.+.+..+|+...+..|+.++.+|+..+.
T Consensus 2 ~is~~q~~~l~~~~~iG~g-il~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSG-LLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGR 80 (359)
T ss_pred cCcHHHHHHHHHHHHHHHH-HHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHH
Confidence 4667777888888888877 4555655554 3444332233333334445667788888876679999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccc-ccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 121 LLFLPALCGDVFWIASVLSSLGSVVDTLCLSF-PFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 121 ~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~-~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
+..+...+..+...+......+..+ +. .++-.+...+.+..+++..| ...+|.+...++..+-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~tp~~~~~l~~l~~~~~--~~~~Gi~~i~r~~~i~ 144 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFI-----KTYLLPRTPIIVIIILIIIVSIY--IVRKGIEVLLRTAEIL 144 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHHHHHHHH--HHHccHHHHHHHHHHH
Confidence 7777666555555555555555555 32 22222333445556666788 8999999999988887
No 30
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=98.41 E-value=0.00022 Score=73.27 Aligned_cols=119 Identities=11% Similarity=-0.033 Sum_probs=76.6
Q ss_pred HHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc---CccCchHHHHHhhcCcchhHHHHHHHHHH
Q psy14002 54 ATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA---SYVTMLDPFQQAYGNRIGGLLFLPALCGD 130 (454)
Q Consensus 54 at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~---~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~ 130 (454)
++.++.++.....+.+.++|+.=.|..+-..+. ++.+....-|. ...+..|..++||+++.+....+...+..
T Consensus 15 ~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~----~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~~~~~~~~l~i 90 (390)
T TIGR01197 15 IAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIM----ALLLQRLCARLGVVTGLDLAEVCREHYPKVPRITLWILAELAI 90 (390)
T ss_pred HHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHH----HHHHHHHHHHheeecCCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 445677777777777778888777643322222 22333333343 34668999999999876544444444455
Q ss_pred HHHHHHHHHhhhHhhhccccccccCCCchhhhhhhh--hhhhhhhchhcchhhHH
Q psy14002 131 VFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEP--NMTIFSKIDWLGTVETK 183 (454)
Q Consensus 131 ~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~--~v~~~Y~~t~~GGl~av 183 (454)
+.....|+.|.+..+ +.++|+|.+.++.+.. .+..++ ...++.|-.
T Consensus 91 i~~~~~e~~G~a~al-----~ll~g~p~~~~v~~~~~~~~~~~~--~~~~~yr~~ 138 (390)
T TIGR01197 91 IATDMAEVIGTAIAL-----NLLSHIPLWGGVLITIVDVFLFLF--LDKPGLRIL 138 (390)
T ss_pred HHHHHHHHHHHHHHH-----HHHhCCcHHHHHHHHHHHHHHHHH--HHhCCceeH
Confidence 667888999999888 8889999887766633 333344 556666543
No 31
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.39 E-value=0.00017 Score=74.47 Aligned_cols=329 Identities=10% Similarity=-0.052 Sum_probs=161.5
Q ss_pred HHHHHHHHHHhhccccccccchHHHhcchhHHH--HHHHHHHHHHHHHHHHhhhhhc-cCccCchHHHHHhhcCcchhHH
Q psy14002 46 FVGVLTLTATWVGGGYINATAEALFTTGLVWCQ--VPLGYSLALVVGALLFVKPMRE-ASYVTMLDPFQQAYGNRIGGLL 122 (454)
Q Consensus 46 ~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~--~~~~~~l~~~~~~~~~~~~~r~-~~~~T~~d~l~~Ryg~~~~~~~ 122 (454)
+-..+.+.+|.+|++. ++.|-.+-..|+.... ..+.+. .+...+..+.+...+ .+..++.+..|+.+|++.+.+.
T Consensus 6 ~g~~~li~GTaIGAGm-LaLPi~~~~~Gf~~~~~~li~~w~-~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 6 LGSIFIVAGTTIGAGM-LAMPLAAAGVGFSVTLILLIGLWA-LMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred HHHHHHHHhcchhHHH-HHHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 3456778888888764 5666666666664332 122222 223345556664333 3457899999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhcccccccc--CCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHH-HHHHHHH
Q psy14002 123 FLPALCGDVFWIASVLSSLGSVVDTLCLSFPF--AISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGM-LLLAFGG 199 (454)
Q Consensus 123 ~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~--gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~-~~il~~~ 199 (454)
.+...+....-+.+-..+.|.+++... +..+ ++|.+.+.++..++... ...-|.|.+ |.++.. +..+++.
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l-~~~~~~~i~~~~~~l~F~~~~~~---iv~~g~~~v---~~~n~~L~~~~ii~ 156 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSI-SDWTGISMSPTAGVLLFTLVAGG---VVCVGTSSV---DLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHH-HHhccCCCChHHHHHHHHHHHHH---HHhccHHHH---HHHHHHHHHHHHHH
Confidence 777766666667777888777762211 2212 34555555555444443 233355654 555532 1111221
Q ss_pred HHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHH-HHHHHhhhcchhHHHHHhccCCHHHHHHHHH
Q psy14002 200 IPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGM-LLLAFGGIPWQSYFQRVLSLRSTKAAYHLST 278 (454)
Q Consensus 200 ~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~ 278 (454)
.+. ...... +.++. +++.+ .++ +. + ..|.+.. +...++.-..=....|++ .+|+|+.||+..
T Consensus 157 -~~~---~~~~l~---p~~~~--~~L~~-~~~----~~-~-~~~~~iPvl~~SFgfh~iIpsl~~y~-~~~~~~~~k~i~ 219 (403)
T PRK15132 157 -LVV---MLALMM---PHIHK--VNLLT-LPL----QQ-G-LALSAIPVIFTSFGFHGSVPSIVSYM-GGNIRKLRWVFI 219 (403)
T ss_pred -HHH---HHHHHH---HhcCH--HHHhc-CCc----cc-c-HHHHHHHHHHHHhhCCcccHHHHHHh-CcCHHHHHHHHH
Confidence 111 101111 11111 11110 011 11 1 1233222 122233211113344555 578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhh
Q psy14002 279 LSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSS 358 (454)
Q Consensus 279 ~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~s 358 (454)
++..+-..+++.+.+.=+.. +-|+...+. ..++.+-+..+-.+..+.-.+++..+.-.-...|+.++.=+.-++..
T Consensus 220 ~Gs~i~li~yl~W~~~~lg~--l~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~ 295 (403)
T PRK15132 220 IGSAIPLVAYIFWQLATLGS--IDSTTFMGL--LANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLF 295 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCHHHHHHH--HHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777666554322211 111100000 00011112233333333444666655555455577777666666655
Q ss_pred hhhhHHHHHhhcCCCCCCCeehhHHHHHHHHHHHhcCCchHHHHHHHHH
Q psy14002 359 SMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFT 407 (454)
Q Consensus 359 s~l~~Di~~~~~~~~~s~~Ri~~~~i~i~a~~la~~~~~~i~~l~~~~~ 407 (454)
.-+ +|..++ +++.+.|+...++.-+....++...|+.......+++
T Consensus 296 d~l-~d~~~~--~~~~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG 341 (403)
T PRK15132 296 DYL-ADLFQR--RNTVGGRLQTGLITFLPPLAFALFYPRGFVMALGYAG 341 (403)
T ss_pred HHH-HHHHcc--CccccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 544 455433 2222223334555666778888888833333333433
No 32
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.39 E-value=0.00019 Score=75.52 Aligned_cols=296 Identities=11% Similarity=-0.033 Sum_probs=151.1
Q ss_pred cCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCc
Q psy14002 39 AGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNR 117 (454)
Q Consensus 39 agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~ 117 (454)
-.|+++.+...+-.+++.+|++-|++.....-..|-+..|..+...+.....+.-+++.-.+. ..-+..++.++.||+.
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~ 89 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSF 89 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcH
Confidence 369999999999999999999999988877777776444322222333333444555554433 3446788999999998
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC-CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHH
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA-ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLA 196 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g-i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il 196 (454)
...+......+......+++..+.+..+ +..++ .+.+....+.. +...+ .-.-|.|.....+.+-.+ +-
T Consensus 90 ~gf~~Gw~~~~~~~~~~~~~~~~~~~~~-----~~~~p~~~~~~~~~i~~-~~~~~--lN~~gv~~~~~~~~~~~~--ik 159 (456)
T PRK10238 90 AGFASGWNYWVLYVLVAMAELTAVGKYI-----QFWYPEIPTWVSAAVFF-VVINA--INLTNVKVFGEMEFWFAI--IK 159 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCcCcHHHHHHHHH-HHHHH--HHHHhHHHHHHHHHHHHH--HH
Confidence 8888888877777777778888777777 55443 33333222222 22223 444566766665554421 22
Q ss_pred HHHHHHHhhhhhhhe-eccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCH-HHHH
Q psy14002 197 FGGIPWQCLSFPFAI-SNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRST-KAAY 274 (454)
Q Consensus 197 ~~~~~ii~~~~~~~~-~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~-~~ar 274 (454)
+...+++.+ +.+.. ....++.+...++.. + .+.+.+++...+........+++...-....-.=+.||+ |+..
T Consensus 160 i~~i~~~ii-~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iP 234 (456)
T PRK10238 160 VIAVVAMII-FGGWLLFSGNGGPQATVSNLW---D-QGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIP 234 (456)
T ss_pred HHHHHHHHH-HHHHHHHcCCCCCCccccccC---C-CCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHH
Confidence 222111100 11111 110011110000000 0 011112222212111111223333333333444456666 4688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhH
Q psy14002 275 HLSTLSALLCFSMAIPAGAFGIIAR-MVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAG 353 (454)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~iG~~a~-~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~ 353 (454)
|+...+.......++. +.... ...|.. +..+.+..+.....+...++...++...++.+.+|+.++.
T Consensus 235 rAi~~~~~~i~~~y~~----~~~~~~~~~p~~--------~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~ 302 (456)
T PRK10238 235 KATNQVIYRILIFYIG----SLAVLLSLMPWT--------RVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSC 302 (456)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHheecChh--------ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 8775443333222222 11111 112210 1112234455555566666777777777777888888888
Q ss_pred HHhhhhhh
Q psy14002 354 ILSSSSMF 361 (454)
Q Consensus 354 l~a~ss~l 361 (454)
+.+.|-.+
T Consensus 303 ~~~~sR~l 310 (456)
T PRK10238 303 VYCNSRML 310 (456)
T ss_pred HHHHHHHH
Confidence 77766553
No 33
>PRK10249 phenylalanine transporter; Provisional
Probab=98.38 E-value=0.00011 Score=77.34 Aligned_cols=295 Identities=13% Similarity=-0.049 Sum_probs=147.8
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRI 118 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~ 118 (454)
.|+++.+.+.+-.+++.+|++-+++.....-..|-...+..+-..+...+.+.-+++.-.+. ..-...++.+++||+..
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~~ 99 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFA 99 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 48899999999999999999999988777766676544322222233333445555554442 23467889999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC-CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHH
Q psy14002 119 GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA-ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAF 197 (454)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g-i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~ 197 (454)
..+......+.......++..+.+..+ +..++ .+.+....+... .... .-.-|.|.....+..-.+ +.+
T Consensus 100 gf~~gw~~~~~~~~~~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~-l~~~--lN~~gv~~~~~i~~~~~~--ikv 169 (458)
T PRK10249 100 GFLSGWNYWVMFVLVGMAELTAAGIYM-----QYWFPDVPTWIWAAAFFI-IINA--VNLVNVRLYGETEFWFAL--IKV 169 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHcCCcCcHHHHHHHHHH-HHHH--HHHhcchhhhhHHHHHHH--HHH
Confidence 878877777666666677777777666 54443 222221111111 1111 233355555444333211 111
Q ss_pred HHHHHHhhhhhhheeccCCCcchhHhhhhhcCccC-CCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCC-HHHHHH
Q psy14002 198 GGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWL-GTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRS-TKAAYH 275 (454)
Q Consensus 198 ~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks-~~~ar~ 275 (454)
+. ++..+.+.+.... ++.++-.....+ .+. +...+.++..+........+.+.......+-.=+.|| +|+..|
T Consensus 170 ~~-i~~~i~~~i~~~~--~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPr 244 (458)
T PRK10249 170 LA-IIGMIGFGLWLLF--SGHGGEKASIDN--LWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPK 244 (458)
T ss_pred HH-HHHHHHHHHHHHH--cCCCCCCCChhh--ccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHH
Confidence 11 1100001111111 111100000000 010 1111233322222222233333344444444455666 456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHH
Q psy14002 276 LSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGIL 355 (454)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~ 355 (454)
+...+......+++... ... ....|+. +..+.+..+.....+...++...++...++.+..++.++.+.
T Consensus 245 ai~~~~~~~~~~y~~~~-~~~--~~~~~~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 313 (458)
T PRK10249 245 AVNQVVYRILLFYIGSL-VVL--LALYPWV--------EVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVY 313 (458)
T ss_pred HHHHHHHHHHHHHHHHH-HHH--heecccc--------ccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776555444443322 111 1222331 111223445555556666677777777777888888888777
Q ss_pred hhhhh
Q psy14002 356 SSSSM 360 (454)
Q Consensus 356 a~ss~ 360 (454)
+.|-.
T Consensus 314 ~~sR~ 318 (458)
T PRK10249 314 SNSRM 318 (458)
T ss_pred HHHHH
Confidence 66554
No 34
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.37 E-value=0.00044 Score=72.35 Aligned_cols=105 Identities=10% Similarity=-0.080 Sum_probs=60.3
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHH-HHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWC-QVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNR 117 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~-~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~ 117 (454)
.|+++.+-..+..++..++ +.+.+........|..+. +..+-..+.....++-+++.-.+. +.-...+|.++.||+.
T Consensus 6 ~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~ 84 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPW 84 (442)
T ss_pred hccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcH
Confidence 4788888887777776665 344443332233444332 111111122223334455554443 3346788999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhh
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVV 145 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~ 145 (454)
...+......+......+....+.+..+
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~a~~~~~~l 112 (442)
T TIGR00908 85 GGFLAGTAILIEFAFAPPAIACFIGAYC 112 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777766665555566666666665
No 35
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.36 E-value=0.0001 Score=77.91 Aligned_cols=290 Identities=12% Similarity=0.006 Sum_probs=144.9
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhH-HHHHHHHHHHHHHHHHHHhhhhhccC--ccCchHHHHHhhcC
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVW-CQVPLGYSLALVVGALLFVKPMREAS--YVTMLDPFQQAYGN 116 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~-~~~~~~~~l~~~~~~~~~~~~~r~~~--~~T~~d~l~~Ryg~ 116 (454)
.|+++.+......+++.+|++.+.-....+...|... .+..+-..+.....++-+++.-++.. .-...+|.++.||+
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~ 85 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGP 85 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccc
Confidence 5889999999999999999987665555444444432 22122223333445566776666653 34578899999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC----CCchhhhh--hhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 117 RIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA----ISNAQPYL--KEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g----i~~~~~i~--i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
....+......+.......+........+ +.+++ .+.+...+ +...+...+ ...-|.|...+.+.+-
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l-----~~~~p~~~~~~~~~~~~~~~~~~~~~~~--ln~~Gi~~~~~i~~~~ 158 (473)
T TIGR00905 86 YIGFMSGWGYWLSAWIGNVAYAVLLFSAL-----GYFFPLFGSGNPVPSILGASVLLWVFTF--LVLRGVRQAAFINTIT 158 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhhcCCCcHHHHHHHHHHHHHHHH--HHHhCHHHHHHHHHHH
Confidence 98777766554433222111111111222 22222 11222111 112222344 5566788777666655
Q ss_pred HHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCC--C-CCchhhHHHHHHHHHHhhhcchhHHHHHhcc
Q psy14002 191 GMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTV--E-TKDYGLWIEGMLLLAFGGIPWQSYFQRVLSL 267 (454)
Q Consensus 191 ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aa 267 (454)
. .+.+..++++.+ +.+...+ + ++... ++.++. + ++....+........+++..+.....-.-+.
T Consensus 159 ~--~~~l~~l~~~ii-~~~~~~~--~--~~~~~------~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 225 (473)
T TIGR00905 159 T--IAKLIPLFLFII-IGWFWFK--L--DLFTA------DFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA 225 (473)
T ss_pred H--HHHHHHHHHHHH-HHHHHhC--c--hhccc------ccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2 232332111110 1111111 1 11100 111111 1 1111222222222333444444444444456
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccch-HHHHHHHhCchHHHHHHHHHHHHHH
Q psy14002 268 RSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSV-LPLVLKELTPNWVAFFGLGAVTAAV 346 (454)
Q Consensus 268 ks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~-~p~l~~~~lp~~l~gl~~~~~laA~ 346 (454)
||+|+..|+...+......+++..... .....|. .+..+.+.. ...+..+..+++...++.++.+.+.
T Consensus 226 k~~r~iPrai~~~~~i~~~~Yil~~~~---~~~~~~~--------~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~ 294 (473)
T TIGR00905 226 KNKSDVGKATVLGTLGALVIYILITLL---SLGVLPQ--------QELANLPNPSMAAVLEMIVGKWGAVLISLGLIISV 294 (473)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHH---HHhCcCH--------HHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 778888999988877766665543322 1112221 011122333 4455666777887777777777788
Q ss_pred HhhhhhHHHhhhhh
Q psy14002 347 MSSADAGILSSSSM 360 (454)
Q Consensus 347 mST~ds~l~a~ss~ 360 (454)
+++..+.+.+.+-.
T Consensus 295 ~~~~~~~~~~~sR~ 308 (473)
T TIGR00905 295 LGSLLSWTMLAAEV 308 (473)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877776554
No 36
>PRK15049 L-asparagine permease; Provisional
Probab=98.33 E-value=0.0011 Score=70.66 Aligned_cols=295 Identities=8% Similarity=-0.082 Sum_probs=146.8
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRI 118 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~ 118 (454)
.|+++.+...+-.+++.+|++-|++........|-...+..+-..+...+.+.-+++.-.+. ..-+..+|.++.+|+..
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~~ 106 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKA 106 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcHh
Confidence 47899999999999999999999999888877786554322222233333344455554443 44578999999999987
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccc--c-CCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHH
Q psy14002 119 GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFP--F-AISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLL 195 (454)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~--~-gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~i 195 (454)
..+......+........+..+.+... +.. + +.+.+....+..++... .-.=|.|.....+.+-.+ +
T Consensus 107 gf~~GW~~~l~~~~~~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~---iN~~gvk~~~~i~~~~~~--i 176 (499)
T PRK15049 107 AYVAGWMYFINWAMTGIVDITAVALYM-----HYWGAFGGVPQWVFALAALTIVGT---MNMIGVKWFAEMEFWFAL--I 176 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccCCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--H
Confidence 777776666554444455555555554 322 2 23433322222222222 222244444443333211 1
Q ss_pred HHHHHH-HHhhhhhhheeccCCCcchhHhhhhhcCc-cC--CCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHH
Q psy14002 196 AFGGIP-WQCLSFPFAISNAQPYLKEPNMTIFSKVD-WL--GTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTK 271 (454)
Q Consensus 196 l~~~~~-ii~~~~~~~~~~~~gg~~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~ 271 (454)
.++.++ ++. +.+.... .+...+ .. ..... +. +.+.+++...++.......+++.......+-.-+.||++
T Consensus 177 ki~~l~~~ii--~~i~~~~-~~~~~~--~~-~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~ 250 (499)
T PRK15049 177 KVLAIVTFLV--VGTVFLG-SGQPLD--GN-TTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ 250 (499)
T ss_pred HHHHHHHHHH--HHHHHHh-CCCCCC--CC-CcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh
Confidence 112201 110 1111111 011100 00 00000 00 011122222222111222333334444445555667665
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhh
Q psy14002 272 -AAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSA 350 (454)
Q Consensus 272 -~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ 350 (454)
+..|+...+......+++...+ .. ....|.. +..+.+..+.....+...++...++.+.++.+.+|+.
T Consensus 251 r~iPrAi~~~~~~i~~~yi~~~~-~~--~~~~p~~--------~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ 319 (499)
T PRK15049 251 TMVPKAINSVIWRIGLFYVGSVV-LL--VMLLPWS--------AYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSL 319 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HH--heecchh--------ccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 5888877655544444433221 11 1122320 1112334455555666667778888888888999999
Q ss_pred hhHHHhhhhhh
Q psy14002 351 DAGILSSSSMF 361 (454)
Q Consensus 351 ds~l~a~ss~l 361 (454)
++.+.+.|-++
T Consensus 320 ns~~~~~sR~l 330 (499)
T PRK15049 320 NSGLYCTGRIL 330 (499)
T ss_pred HHHHHHHHHHH
Confidence 99887765543
No 37
>PRK10655 potE putrescine transporter; Provisional
Probab=98.32 E-value=0.00038 Score=72.77 Aligned_cols=284 Identities=8% Similarity=-0.091 Sum_probs=133.5
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRI 118 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~ 118 (454)
.|+++.+-.....+++.+|++-+.-.... .+.|-...+..+...+...+.++-+++.-.+. +.-...+|.++.||+..
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~-~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~ 83 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKL-AQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSG 83 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcch
Confidence 47889999988888999998877754444 44565443322222333333445556543322 23356899999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCch-hhhhhh---hhhhhhhhchhcchhhHHHHHHHHHHHHH
Q psy14002 119 GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNA-QPYLKE---PNMTIFSKIDWLGTVETKDYGLWIEGMLL 194 (454)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~-~~i~i~---~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~ 194 (454)
..+......+..+.-..+.-.+....+ ...++.+.+ ....+. ......+ .-..|.|-....+.+. +.
T Consensus 84 gf~~gw~~~~~~~~~~~~~a~~~~~y~-----~~~~~~~~~~~~~~~~~~~~l~~~~~--ln~~g~~~~~~i~~i~--~~ 154 (438)
T PRK10655 84 NFMANYTYGVSLLIANVAIAISAVGYG-----TELFGATLSPVQICLATIGVLWLCTV--ANFGGARITGQISSVT--VW 154 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcccccchHHHHHHHHHHHHHHHH--HHHhCHHHHHHHHHHH--HH
Confidence 766666554433321111111222233 333433211 111111 1122233 3445666655555444 22
Q ss_pred HHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCch---hhHHHHHHHHHHhhhcchhHHHHHhccCCH-
Q psy14002 195 LAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDY---GLWIEGMLLLAFGGIPWQSYFQRVLSLRST- 270 (454)
Q Consensus 195 il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~qr~~aaks~- 270 (454)
..++. +++. ....... .+.++ . .+++ ++.+. ..+........+.+..+....+-.-+.||+
T Consensus 155 ~~l~~-l~~~--~i~~~~~--~~~~~----~--~~~~----~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~ 219 (438)
T PRK10655 155 GVIIP-VVGL--SIIGWFW--FSPSL----Y--VAAW----NPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE 219 (438)
T ss_pred HHHHH-HHHH--HHHHHHH--hCccc----c--cCCc----CccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc
Confidence 22232 2111 1111111 00111 0 0111 11111 112111222233344444444444556775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhh
Q psy14002 271 KAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSA 350 (454)
Q Consensus 271 ~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ 350 (454)
|+..|+...+......+++..... .....|+. +..+.+..+.....+.++++...++.+..+.+.+++.
T Consensus 220 r~iPrAi~~~~~~~~~~Y~l~~~~---~~~~~~~~--------~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~ 288 (438)
T PRK10655 220 RNVPIAVLGGTLGAAVIYIVSTNV---IAGIVPNM--------ELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSL 288 (438)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH---HHhCCCHH--------HHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence 589999988877766655443321 11222321 1122233344455677777776666665555666776
Q ss_pred hhHHHhhhh
Q psy14002 351 DAGILSSSS 359 (454)
Q Consensus 351 ds~l~a~ss 359 (454)
.+.+.+.+-
T Consensus 289 ~~~~~~~sR 297 (438)
T PRK10655 289 LGWQFTIAQ 297 (438)
T ss_pred HHHHHHHHH
Confidence 666555544
No 38
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.29 E-value=0.00059 Score=71.51 Aligned_cols=89 Identities=16% Similarity=0.048 Sum_probs=58.5
Q ss_pred cCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCc
Q psy14002 39 AGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNR 117 (454)
Q Consensus 39 agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~ 117 (454)
-.|+++.+-.....+++.+|++-+......+. .|-...|..+...+.....++-+++.-.+. +.-...++.++.||+.
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~-~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~ 84 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS-TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPF 84 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCch
Confidence 46889999999999999999998887655544 343333322222333444555666655444 3347888999999998
Q ss_pred chhHHHHHHHH
Q psy14002 118 IGGLLFLPALC 128 (454)
Q Consensus 118 ~~~~~~~~~~~ 128 (454)
...+......+
T Consensus 85 ~gf~~gw~~~~ 95 (445)
T PRK10644 85 LGYQTNVLYWL 95 (445)
T ss_pred HHHHHHHHHHH
Confidence 76666554443
No 39
>PRK11017 codB cytosine permease; Provisional
Probab=98.29 E-value=0.00038 Score=72.05 Aligned_cols=169 Identities=12% Similarity=-0.061 Sum_probs=96.8
Q ss_pred cCchHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHH
Q psy14002 104 VTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETK 183 (454)
Q Consensus 104 ~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av 183 (454)
.+.+..-|.-||.+..++.++...+..+.|.+.|....+..+ +..+|++.+...++..++.+. ...-|.|..
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l-----~~~~~~~~~~~~~i~~~l~~~---~~~~G~~~i 142 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPV-----VKATGLDINLLIVLSGLLMTV---TAYFGISAL 142 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 667778888899998778888888888999999988888777 777888877766655555544 556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHHHH
Q psy14002 184 DYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQR 263 (454)
Q Consensus 184 ~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr 263 (454)
-+-+.+-. .++.+. .+.+ ... ..++.||.+++.+.-+ + ++..+...++..+....+...+...+.|
T Consensus 143 ~~~~~~~~--p~~~~~-~~~~--~~~-~~~~~~g~~~~~~~~~---~-----~~~~~~~a~~~~~g~~~~~~~~~~DysR 208 (404)
T PRK11017 143 TILSRIAV--PAIALL-GGYS--VWL-AVNDVGGLDGLKAIVP---A-----EPLDFSAALTLVVGSFISGGTLTADFVR 208 (404)
T ss_pred HHHHHHHH--HHHHHH-HHHH--HHH-HHhccCchhhhhcCCC---C-----CcccHHHHHHHHHHHHHHhHhcCCChHh
Confidence 77666652 233332 2211 111 2233355544432111 0 1112222222233333444445555788
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14002 264 VLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIAR 299 (454)
Q Consensus 264 ~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~ 299 (454)
+ +|++|++..+..++.... ...+.++|....
T Consensus 209 y--~k~~~~~~~~~~lg~~i~---~~~~~~~G~~~a 239 (404)
T PRK11017 209 F--GRSAKIAVLATMVAFFLG---NSLMFIFGAAGA 239 (404)
T ss_pred h--ccCccceeehhHHHHHHH---HHHHHHHHHHHH
Confidence 8 466666655555543332 223444565443
No 40
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.28 E-value=0.002 Score=68.02 Aligned_cols=295 Identities=12% Similarity=-0.044 Sum_probs=143.6
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHH-H-HHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcC
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWC-Q-VPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGN 116 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~-~-~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~ 116 (454)
.|+++.+...+-.+++.+|++-|.+........|-.+. + +.++ .+...+.+.-+++.-++. +.-...+|.++.||+
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~-~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~ 91 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIG-ALVVYLVMQCLGELSVAMPETGAFHVYAARYLGP 91 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCh
Confidence 59999999999999999999988877776666664332 2 2222 222233344445444332 223478899999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC-CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHH
Q psy14002 117 RIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA-ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLL 195 (454)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g-i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~i 195 (454)
....+......+......+.+..+.+..+ +...+ .+.+....+..++..+ .-.=|.|-....+..-. .+
T Consensus 92 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~-----~~~~p~~~~~~~~~~~~~~~~~---in~~gvk~~~~~~~~~~--~~ 161 (471)
T PRK11387 92 ATGYTVAWLYWLTWTVALGSSLTAAGFCM-----QYWFPQVPVWPWCLLFCALIFG---LNVVSTRFFAEGEFWFS--LI 161 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCcCcHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHH--HH
Confidence 87767776666665555555555555544 43333 2222222222222222 22335555554443221 11
Q ss_pred HHHHHH-HHhhhhhhheeccCCCcc-hhHhhhhhcCccC-CCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHH-
Q psy14002 196 AFGGIP-WQCLSFPFAISNAQPYLK-EPNMTIFSKVDWL-GTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTK- 271 (454)
Q Consensus 196 l~~~~~-ii~~~~~~~~~~~~gg~~-~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~- 271 (454)
.++.++ ++. +.+.... +... +-.+..+...++. ++..+++...+........+++.......+-.=+.||+|
T Consensus 162 ki~~l~~~ii--~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r 237 (471)
T PRK11387 162 KVVTILAFIV--LGGAAIF--GFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAK 237 (471)
T ss_pred HHHHHHHHHH--HHHHHHH--cCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhh
Confidence 122101 110 1110000 1000 0000000000000 111122222222222233344455555556566677765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhh
Q psy14002 272 AAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSAD 351 (454)
Q Consensus 272 ~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~d 351 (454)
+..|+...+......+++... +......|.. +....+..+.....+...++...++...++.+..++.+
T Consensus 238 ~iPrAi~~~~~~~~~~y~~~~---~~~~~~~p~~--------~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~ 306 (471)
T PRK11387 238 VIPVAIRTTIARLVIFFVGTV---LVLAALIPMQ--------QAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAAN 306 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHheecCcc--------ccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 578887766554444443322 1112223321 11112334444566666778777777777888888888
Q ss_pred hHHHhhhhh
Q psy14002 352 AGILSSSSM 360 (454)
Q Consensus 352 s~l~a~ss~ 360 (454)
+.+.+.|-.
T Consensus 307 ~~~~~~sR~ 315 (471)
T PRK11387 307 SGLYASGRM 315 (471)
T ss_pred HHHHHhhHH
Confidence 888776653
No 41
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.28 E-value=0.00052 Score=71.71 Aligned_cols=290 Identities=11% Similarity=0.017 Sum_probs=138.6
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRI 118 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~ 118 (454)
.|+++.+-.....+++.+|++-+.-.... .+.|-...+..+-..++....++-+++.-.+. +.-...+|.++ +|+..
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~-a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~ 81 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALLPANL-ASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAF 81 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHH
Confidence 58899999999999999999988655544 44565444433333444555566666665443 33356778877 88877
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHhhhHhhhccccccccCC-C-chhhhhhhhhh--hhhhhchhcchhhHHHHHHHHHHHH
Q psy14002 119 GGLLFLPALCGD-VFWIASVLSSLGSVVDTLCLSFPFAI-S-NAQPYLKEPNM--TIFSKIDWLGTVETKDYGLWIEGML 193 (454)
Q Consensus 119 ~~~~~~~~~~~~-~~~~~~ql~~~g~i~~~~~~~~~~gi-~-~~~~i~i~~~v--~~~Y~~t~~GGl~av~~TD~iQ~~~ 193 (454)
....+....+.. +...+.+....+ .+ ...++. + .....++..++ ...+ .-.-|.|. +..+|.+
T Consensus 82 gf~~gw~~~~~~~~~~~~~~~~~~~-y~-----~~~~p~~~~~~~~~~~~~~i~~~~~~--ln~~gvk~---~~~i~~i- 149 (435)
T PRK10435 82 GFQTGVLYYHANWIGNLAIGITAVS-YL-----STFFPVLNDPIPAGIACIAIVWVFTF--VNMLGGTW---VSRLTTI- 149 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHccccCChHHHHHHHHHHHHHHHH--HHHHhHHH---HHHHHHH-
Confidence 655555433221 222233233322 22 222221 1 11111111111 2223 33445554 4455532
Q ss_pred HHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCH-HH
Q psy14002 194 LLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRST-KA 272 (454)
Q Consensus 194 ~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~-~~ 272 (454)
..+.. ++.. +.+... ++........ ..+| .+.++.+...+........+++........-.-+.||+ |+
T Consensus 150 -~~~~~-li~~--~~~~i~----g~~~~~~~~~-~~~~-~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~ 219 (435)
T PRK10435 150 -GLVLV-LIPV--VGTAIV----GWHWFDAATY-AANW-NTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRT 219 (435)
T ss_pred -HHHHH-HHHH--HHHHHH----HHHHcCHHhh-cccc-cCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcccc
Confidence 11111 1111 101111 1100000000 0122 11112222333332333344444555555555677887 68
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhh
Q psy14002 273 AYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADA 352 (454)
Q Consensus 273 ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds 352 (454)
..|+...+......+++...+ ......|.. +..+.+..+....++..+++..-++.+.++.+++++.++
T Consensus 220 iPrAi~~~~~iv~ilYil~~~---~~~~~~p~~--------~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~ 288 (435)
T PRK10435 220 VPLATMLGTGLAGIIYIAATQ---VISGMFPAS--------VMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGS 288 (435)
T ss_pred ccHHHHHHHHHHHHHHHHHHH---HHHhcCCHH--------HHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 999998887666555554332 222222321 111233444455666777787777666666677788776
Q ss_pred HHHhhhhh---hhHH
Q psy14002 353 GILSSSSM---FTRN 364 (454)
Q Consensus 353 ~l~a~ss~---l~~D 364 (454)
.+...+.. .+||
T Consensus 289 ~~~~~~r~~~~~ard 303 (435)
T PRK10435 289 WMMLVGQAGVRAAND 303 (435)
T ss_pred HHHHHHHHHHHHHhC
Confidence 65544422 4555
No 42
>PRK11021 putative transporter; Provisional
Probab=98.27 E-value=0.00096 Score=69.10 Aligned_cols=284 Identities=12% Similarity=0.018 Sum_probs=135.8
Q ss_pred cChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcchhH
Q psy14002 43 VGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRIGGL 121 (454)
Q Consensus 43 l~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~~~~ 121 (454)
++.|......+++.+|++-|.......-..|-...+..+-..+.....++-+++.-++. +.-...+|.++.||+.....
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 36677778888999999999987776666665444322222333444455566655443 33467899999999998766
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHH
Q psy14002 122 LFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIP 201 (454)
Q Consensus 122 ~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ 201 (454)
.+....+.......+......... +..++.+.+....+...+..+. + .=-.+++-.+..+|.+ +.++. +
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~-~ln~~Gv~~~~~~~~~--~~~~~-~ 149 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFG-----QALFGWSSWQLLLAELLTLALL--W-LLNLRGASSSANLQTV--IALLI-V 149 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-----HHHcCCCCchHHHHHHHHHHHH--H-HHHHhhHHHHHHHHHH--HHHHH-H
Confidence 666554432222222222222333 3444444322222211112111 1 1124444455555532 21111 1
Q ss_pred HHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCH-HHHHHHHHHH
Q psy14002 202 WQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRST-KAAYHLSTLS 280 (454)
Q Consensus 202 ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~-~~ar~~~~~~ 280 (454)
.+. . ..... ++.+ +++.++ .+.++.++..+........+.+.......+-.-+.||+ |+..|+...+
T Consensus 150 ~i~--~-~~~~~--~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~ 217 (410)
T PRK11021 150 ALV--V-AIWWA--GDIK------PADIPF-PAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIG 217 (410)
T ss_pred HHH--H-HHHHH--cCCc------hhcCCC-CCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHH
Confidence 111 1 11111 2111 001111 11122232223222222233334444445555567774 6899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhh
Q psy14002 281 ALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSM 360 (454)
Q Consensus 281 ~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~ 360 (454)
......+++.... .. ....|.. +..+.+...+....+.++++...++....+.+.+++..+.+.+.+-.
T Consensus 218 ~~~~~~lYil~~~-~~--~~~~~~~--------~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~ 286 (410)
T PRK11021 218 LLLAGLVYWACTV-VV--LHFPAYG--------DKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARL 286 (410)
T ss_pred HHHHHHHHHHHHH-HH--HhcCCCc--------chhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666654332 11 1122210 11123445666666666655444444445556666666665554443
No 43
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.27 E-value=0.00021 Score=73.30 Aligned_cols=340 Identities=11% Similarity=-0.040 Sum_probs=192.2
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhh-hccCccCchHHHHHhhcCc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPM-REASYVTMLDPFQQAYGNR 117 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~-r~~~~~T~~d~l~~Ryg~~ 117 (454)
.|.++...+-+--.+..+|++-|+|.....-..|-+.+. |.++..+.+ +...-+.+.. .+-+..|..||-++-+|+.
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f-~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~ 90 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVF-LIMRALGEMLVANPVSGSFSDYARKYLGPW 90 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCcHHHHHHHHhcch
Confidence 488888888888888899999999999999999998764 333332222 2233344433 3457789999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhhhcccccccc-CCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHH
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPF-AISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLA 196 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~-gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il 196 (454)
..-......-+..+.-..+|+.+.+..+ +..+ ++|.|+..++..++... .-.=+.|.---++.--++ +.
T Consensus 91 Agf~tgW~YW~~wv~v~~ae~tAi~~y~-----~~WfP~vP~Wv~al~~~~l~~~---~NL~sVk~FGE~EfWfAl--IK 160 (462)
T COG1113 91 AGFLTGWTYWFFWVLVGIAELTAIGIYL-----QFWFPDVPQWVFALAAVVLLLA---VNLISVKVFGELEFWFAL--IK 160 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HH
Confidence 9888888777777777889999999999 8877 56777766555554443 222234444444433321 22
Q ss_pred HHHH--HHHhhhhhhhe--eccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHHH
Q psy14002 197 FGGI--PWQCLSFPFAI--SNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKA 272 (454)
Q Consensus 197 ~~~~--~ii~~~~~~~~--~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ 272 (454)
+..+ .++. ++.++. +...++..++ +++.+|.++ -|++....+.......+++..-.-+-.-.-.+|||++
T Consensus 161 V~aIi~~Iv~-G~~ll~~g~~~~~~~~g~-snl~~hGGf----fP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k 234 (462)
T COG1113 161 VAAIIAFIVV-GIVLLFGGFGGGGGAAGF-SNLWDHGGF----FPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEK 234 (462)
T ss_pred HHHHHHHHHH-HHHHHhhccCCCCCCccc-cccccCCCc----CCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhh
Confidence 2221 1110 011111 1111111111 111112222 2445443332233333444343444455567777776
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhh
Q psy14002 273 AY-HLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSAD 351 (454)
Q Consensus 273 ar-~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~d 351 (454)
.- |+.=--..-...++.... .+.. .++|= .+..+.+.-+-....+..=|+..+++-..++.|.+|+.+
T Consensus 235 ~ipkAin~V~~RI~iFYvgsl--~vi~-~l~PW--------~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~N 303 (462)
T COG1113 235 AIPKAINSVIWRILIFYVGSL--FVIL-SLYPW--------NQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALN 303 (462)
T ss_pred HHHHHHhhhhHHHHHHHHHHH--HHHh-eeccc--------cccCCCCCcHHHHHHHcCCcccccceeEEEeechhhccc
Confidence 44 443211111222332211 1111 23341 011223345555566666678889998889999999999
Q ss_pred hHHHhhhhhhhH-----HHHHhhcCCCCCCC------eehhHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q psy14002 352 AGILSSSSMFTR-----NIYKLSFRPKLTPN------WVAFFGLGAVTAAVMSSADAGILSSSSMFTRN 409 (454)
Q Consensus 352 s~l~a~ss~l~~-----Di~~~~~~~~~s~~------Ri~~~~i~i~a~~la~~~~~~i~~l~~~~~~~ 409 (454)
|.+.+.+.++-. |--|.+ .+.|.+ -..+.+...++..+-+..|+++++++......
T Consensus 304 SglystsRmL~~la~~g~APk~~--~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~ 370 (462)
T COG1113 304 SGLYSTSRMLYSLAKQGDAPKAF--AKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGL 370 (462)
T ss_pred ccccccchHHHHHhhcCcccHhH--hhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 999998887643 111111 122222 22455667777788888888888876554433
No 44
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.22 E-value=0.0019 Score=66.64 Aligned_cols=338 Identities=12% Similarity=0.040 Sum_probs=166.8
Q ss_pred HHHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhc-cCccCchHHHHHhhcCcchhHHHHH
Q psy14002 48 GVLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMRE-ASYVTMLDPFQQAYGNRIGGLLFLP 125 (454)
Q Consensus 48 ~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~-~~~~T~~d~l~~Ryg~~~~~~~~~~ 125 (454)
..+-+.+|.+||+ .++.|-.....|+.... ..+...+.+...++.+.+---+ .+..++..+-|+-.|++.+.+..+.
T Consensus 14 g~~iIaGT~IGAG-MLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i~~~~ 92 (415)
T PRK09664 14 GVMVIAGTVIGGG-MFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGIT 92 (415)
T ss_pred hhHHhhhccHhHH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHH
Confidence 4556667777765 45677777777764332 2233334444456667765433 3667788888999999887777766
Q ss_pred HHHHHHHHHHHHHHhhhHhhhcccccccc------CCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHH
Q psy14002 126 ALCGDVFWIASVLSSLGSVVDTLCLSFPF------AISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGG 199 (454)
Q Consensus 126 ~~~~~~~~~~~ql~~~g~i~~~~~~~~~~------gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~ 199 (454)
.++....-+.+=+.+.|.++ +..+ ++|.+.+.++...+.... ... |.|.+-+-+.+- +..+++.
T Consensus 93 ~~fl~Y~Ll~AYisggG~il-----~~~l~~~~~~~i~~~~~~llF~~~~~~~--v~~-gt~~vd~~nr~l--~~~~ii~ 162 (415)
T PRK09664 93 VAFVLYILTYAYISANGAII-----SETISMNLGYHANPRIVGICTAIFVASV--LWI-SSLAASRITSLF--LGLKIIS 162 (415)
T ss_pred HHHHHHHHHHHHHhccHHHH-----HHHHhhhccCCCcHHHHHHHHHHHHHHH--HHh-chhHHHHHHHHH--HHHHHHH
Confidence 55554455667788888888 4443 445565555555555443 333 446665555444 2222222
Q ss_pred HHHHhhhhhhheeccCCCcchhH-hhhhhcCccCCCCCCCch--hhHHHHH-HHHHHhhh-cchhHHHHHhccCCHHHHH
Q psy14002 200 IPWQCLSFPFAISNAQPYLKEPN-MTIFSKVDWLGTVETKDY--GLWIEGM-LLLAFGGI-PWQSYFQRVLSLRSTKAAY 274 (454)
Q Consensus 200 ~~ii~~~~~~~~~~~~gg~~~l~-~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~-~~p~~~qr~~aaks~~~ar 274 (454)
.++. + ... ..++. +.+.+ .++.. +.... ..|.+.. +...+++- .- ....|++. +|+|+.|
T Consensus 163 -f~~~--~-~~l------~~~i~~~~L~~-~~~~~--~~~~~~~~i~~alPVl~~SFgfh~iI-Psl~~y~~-~d~~~~~ 227 (415)
T PRK09664 163 -FVIV--F-GSF------FFQVDYSILRD-ATSTT--AGTSYFPYIFMALPVCLASFGFHGNI-PSLIICYG-KRKDKLI 227 (415)
T ss_pred -HHHH--H-HHH------hhcccHHHHhc-Ccccc--ccchHHHHHHHHHHHHHHhhhCCCcc-hHHHHHhC-ccHHHHH
Confidence 1110 1 111 11111 11111 11100 01111 1222221 22223331 12 33446664 7789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCc-cCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhH
Q psy14002 275 HLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKN-FTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAG 353 (454)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~-~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~ 353 (454)
|+.+.+..+-..+++++.. ...+. .|+. ++.+. .++++-+...-.+..+.-.+++.-+.-.-...|+.++.=+.
T Consensus 228 kaIl~Gs~IpLviY~~W~~-~ilG~--lp~~--~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv 302 (415)
T PRK09664 228 KSVVFGSLLALVIYLFWLY-CTMGN--IPRE--SFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGV 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcC--CCHH--HHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776665554332 22221 1210 00000 01112222223333333445555555545555666666666
Q ss_pred HHhhhhhhhHHHHHhhcCCCCCCCee-hhHHHHHHHHHHHhcCCchHHHHHHHHH--Hhhhhhccccccc
Q psy14002 354 ILSSSSMFTRNIYKLSFRPKLTPNWV-AFFGLGAVTAAVMSSADAGILSSSSMFT--RNIYKLSFRPKVD 420 (454)
Q Consensus 354 l~a~ss~l~~Di~~~~~~~~~s~~Ri-~~~~i~i~a~~la~~~~~~i~~l~~~~~--~~~~~~~f~p~~~ 420 (454)
-++...-+ +|..+. +++... |. .-++.-+..+.+++..|+.-+.-..+++ ..+.....|+.+.
T Consensus 303 ~LGL~D~l-~D~~~~--~~~~~~-r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~ 368 (415)
T PRK09664 303 TLGLFDYL-ADLFKI--DNSHGG-RFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLA 368 (415)
T ss_pred HHHHHHHH-HHHhCC--CCcccc-ceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655444 355433 222223 44 3344556788888888855444444433 2334455555544
No 45
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.21 E-value=0.00012 Score=75.56 Aligned_cols=319 Identities=13% Similarity=0.035 Sum_probs=169.7
Q ss_pred ChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHH---HHHHHHHHHhhhhhccCccCchHHHHHhhcCcchh
Q psy14002 44 GLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSL---ALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGG 120 (454)
Q Consensus 44 ~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l---~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~ 120 (454)
..+.+++.++|-.+||+-++=.|..+++.|-.+.+..+|+.+ +..+.+..-.-+. |. + .|=+.+|-|++...
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~---~~-~-~~~l~~~v~~~f~~ 78 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKS---GG-G-IEDLASRVGPKFAL 78 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc---CC-C-HHHHhcccCcHHHH
Confidence 345688999999999999999999999999888876666554 3344443222222 22 3 33345566666544
Q ss_pred HHHHHHHHHHHH-----HHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHH-HHH
Q psy14002 121 LLFLPALCGDVF-----WIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEG-MLL 194 (454)
Q Consensus 121 ~~~~~~~~~~~~-----~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~-~~~ 194 (454)
+...+..+..-+ ..++--+..+ + +..++.+.+...++..++...- +..=-+|-.-..|.+-- +..
T Consensus 79 if~~~i~l~IGP~~aiPRtaa~sfe~~--i-----~p~~~~~~~~~~~ifs~iFF~i--~~~l~~~p~kivd~iGk~LTP 149 (427)
T PF05525_consen 79 IFTILIYLSIGPLFAIPRTAAVSFEMG--I-----APFFPENSNISLLIFSIIFFAI--TYLLSLNPSKIVDRIGKFLTP 149 (427)
T ss_pred HHHHHHHHHHHhcccCcchhhhhHHHh--h-----hccCCcccccchhhhhHHHHHH--HHHHHhchhhHHHHHHHHHHH
Confidence 433322222211 2222222111 1 4445533333333332222111 22223566666676642 133
Q ss_pred HHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCC-CCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHH
Q psy14002 195 LAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLG-TVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAA 273 (454)
Q Consensus 195 il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~a 273 (454)
++++.+.++ +.....+-.|...+..+...+ .++.. ..+..+-..- .-...++.....+.-+| ..||+|+.
T Consensus 150 ~LL~~l~il---ii~~i~~p~g~~~~~~~~y~~-~~f~~Gf~eGY~TMD~---laal~Fg~iIi~~i~~~--g~~~~k~~ 220 (427)
T PF05525_consen 150 ILLILLAIL---IIKGIFSPIGPPQAPSGAYAS-NPFFKGFLEGYQTMDA---LAALAFGIIIINAIRQK--GYKDKKEI 220 (427)
T ss_pred HHHHHHHHH---HHHHHHcCCCCccccchhhhh-hHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHh--CCCCHHHH
Confidence 444431221 112222322333222211111 11111 0111000011 12223444444454444 55577887
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhh
Q psy14002 274 YHLSTLSALLCF----SMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSS 349 (454)
Q Consensus 274 r~~~~~~~~~~~----~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST 349 (454)
+|....+++... .++..+..+|......+ .+..|..+.+-...++++++.-..++...+.-|++.|
T Consensus 221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~----------~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTT 290 (427)
T PF05525_consen 221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSF----------PDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTT 290 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc----------cCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 777776665543 33333333333222221 1235677788888999999888888888889999999
Q ss_pred hhhHHHhhhhhhhHHHHHhhcCCCCCCCeehhHHHHHHHHHHHhcCCchHHHH
Q psy14002 350 ADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSS 402 (454)
Q Consensus 350 ~ds~l~a~ss~l~~Di~~~~~~~~~s~~Ri~~~~i~i~a~~la~~~~~~i~~l 402 (454)
+-++..+++.-+.|..- +.+. |..+++..+++..+|...-+.++.+
T Consensus 291 aIGL~~a~a~yf~~~~~------kisY-~~~v~i~~i~S~~ian~Gl~~Ii~~ 336 (427)
T PF05525_consen 291 AIGLISACAEYFSELFP------KISY-KVWVIIFTIFSFIIANLGLDQIIKI 336 (427)
T ss_pred HHHHHHHHHHHHHHHhc------ccCh-HHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999988777755432 2222 6677778899999999988888765
No 46
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.20 E-value=0.0045 Score=65.39 Aligned_cols=296 Identities=13% Similarity=-0.004 Sum_probs=143.2
Q ss_pred cCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhc-cCccCchHHHHHhhcCc
Q psy14002 39 AGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMRE-ASYVTMLDPFQQAYGNR 117 (454)
Q Consensus 39 agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~-~~~~T~~d~l~~Ryg~~ 117 (454)
=.|+++.+-..+-.+++.+|++-+.+........|-...|..+-..+.....+.-+++.--. -...+..++.++.||+.
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~~ 97 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPW 97 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCcH
Confidence 47899999998888999999999998887777777744432111122222233334444321 22335678999999998
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC-CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHH
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA-ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLA 196 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g-i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il 196 (454)
...+......+.......++..+.+..+ +..++ .+.+....+...+..+ .-.-|.|-....+.+-.. +.
T Consensus 98 ~gf~~gW~~~~~~~~~~~a~~~a~~~~~-----~~~~p~~~~~~~~~~~~~~~~~---iN~~g~~~~~~i~~~~~~--~k 167 (469)
T PRK11049 98 AGYFTGWTYWFCWVVTGIADVVAITAYA-----QFWFPDLSDWVASLAVVLLLLS---LNLATVKMFGEMEFWFAM--IK 167 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCCCcHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH--HH
Confidence 8777777766655444455555666555 44443 2222211221121222 223355655555544321 21
Q ss_pred HHHHHHHhhhhhhheeccCCCc---chhHhhhhhcCccCC--CCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHH
Q psy14002 197 FGGIPWQCLSFPFAISNAQPYL---KEPNMTIFSKVDWLG--TVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTK 271 (454)
Q Consensus 197 ~~~~~ii~~~~~~~~~~~~gg~---~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~ 271 (454)
+.....+.+ ..+.... ++. ++...... ++.+ ...|.+...+........+.+..+....+-.-+.||+|
T Consensus 168 l~~l~~~ii-~g~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~ 241 (469)
T PRK11049 168 IVAIVALIV-VGLVMVA--MHFQSPTGVEASFA---HLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE 241 (469)
T ss_pred HHHHHHHHH-HHHHHHH--cCCCCCCCCCCccc---ccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh
Confidence 221111100 1111111 111 11000000 1001 11122322233222333344445555555555667754
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhh
Q psy14002 272 -AAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSA 350 (454)
Q Consensus 272 -~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ 350 (454)
+..|+...........++... .... ...|. .+..+.+..+.....+...++...++...++.+.+++.
T Consensus 242 r~iPrai~~~~~~~~~~y~l~~-~~~~--~~~~~--------~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~ 310 (469)
T PRK11049 242 KSLPRAINSIPIRIIMFYVFAL-IVIM--SVTPW--------SSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSA 310 (469)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHe--eecCc--------cccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 678887543333333332211 1111 11221 11112234455555555556666666777777888888
Q ss_pred hhHHHhhhhhh
Q psy14002 351 DAGILSSSSMF 361 (454)
Q Consensus 351 ds~l~a~ss~l 361 (454)
++.+.+.|-.+
T Consensus 311 ~~~~~~~sR~l 321 (469)
T PRK11049 311 NSGVFSTSRML 321 (469)
T ss_pred HHHHHHHHHHH
Confidence 88877665543
No 47
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.17 E-value=0.0014 Score=67.88 Aligned_cols=341 Identities=10% Similarity=-0.001 Sum_probs=155.9
Q ss_pred HHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhc--cCccCchHHHHHhhcCcchhHHHHH
Q psy14002 49 VLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMRE--ASYVTMLDPFQQAYGNRIGGLLFLP 125 (454)
Q Consensus 49 ~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~--~~~~T~~d~l~~Ryg~~~~~~~~~~ 125 (454)
.+++.+|.+||+.+ ..|-.+-..|+-... ..+.........+..+.+..-+ .+..++.|..|+.+|++.+.+..+.
T Consensus 25 ~l~l~GTAIGAGmL-fLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 25 TLGLFGTAIGAGVL-FFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHHhHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 37889999998754 456655555553321 1111112222233344443222 3568899999999999998888777
Q ss_pred HHHHHHHHHHHHHHhhhHhhhccccccccCC---CchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy14002 126 ALCGDVFWIASVLSSLGSVVDTLCLSFPFAI---SNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPW 202 (454)
Q Consensus 126 ~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi---~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~i 202 (454)
..+...+.+.+=..++...++++.-++ +++ |.+...++...+... ...-|-|.+.+..-+- +..+++. ++
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~q-l~~~~~~r~l~slifv~~l~~---iv~~G~~~v~kv~~~L--v~~~i~~-l~ 176 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQ-LGFAPLNRGFVALFLLLLMAF---VIWFGKDLMVKVMSYL--VWPFIAS-LV 176 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcCCccHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHH--HHHHHHH-HH
Confidence 666555544433344444442221112 333 444444443333333 3344556665555444 2222222 21
Q ss_pred HhhhhhhheeccCCCcchhHhhhhhcCccC--CCCCCCc--hhhHHHHH-HHHHHhhh-cch---hHHHHHhc---cCC-
Q psy14002 203 QCLSFPFAISNAQPYLKEPNMTIFSKVDWL--GTVETKD--YGLWIEGM-LLLAFGGI-PWQ---SYFQRVLS---LRS- 269 (454)
Q Consensus 203 i~~~~~~~~~~~~gg~~~l~~~~~~~~~~~--~~~~~~~--~~~~~~~~-~~~~~~~~-~~p---~~~qr~~a---aks- 269 (454)
. +.+... +.++. +.+.+ .++. ++....+ ...|.+.. +...++.- .-| .+.+|-+. .||
T Consensus 177 ~---l~~~Li---P~w~~--~~L~~-~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~ 247 (443)
T PRK13629 177 L---ISLSLI---PYWNS--AVIDQ-VDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDF 247 (443)
T ss_pred H---HHHHHH---HHcCH--HHHhc-CccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccch
Confidence 1 111111 22221 11111 1110 1111111 12343322 22233331 122 23344454 567
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCc---------hHHHHHHH
Q psy14002 270 -TKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTP---------NWVAFFGL 339 (454)
Q Consensus 270 -~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp---------~~l~gl~~ 339 (454)
+|++||....+..+...+++++.+. .. -.+-|++.. ...++...++-+++++.-. +++..+.-
T Consensus 248 a~~k~~rii~~gs~i~lv~y~fwv~S-~~-gsLs~~~l~-----~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ 320 (443)
T PRK13629 248 TERKCSQIISRASMLMVAVVMFFAFS-CL-FTLSPQNMA-----EAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAAS 320 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCCHHHHH-----HHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHH
Confidence 8999999999988877666554431 11 111122100 0011223345556554443 44554444
Q ss_pred HHHHHHHHhhhhhHHHhhhhhhhHHHHHh----hcCCCCCCC---eehhHHHHHHHHHHHhcCCchHHHHHH-HHHHhhh
Q psy14002 340 GAVTAAVMSSADAGILSSSSMFTRNIYKL----SFRPKLTPN---WVAFFGLGAVTAAVMSSADAGILSSSS-MFTRNIY 411 (454)
Q Consensus 340 ~~~laA~mST~ds~l~a~ss~l~~Di~~~----~~~~~~s~~---Ri~~~~i~i~a~~la~~~~~~i~~l~~-~~~~~~~ 411 (454)
.-...|+.++.=+..+..---+ +.+..+ -.+++.++| |+..+.+-+.+-..+...| +++++.. +.++++.
T Consensus 321 ifa~~AI~TSFlGv~LGl~E~l-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np-~il~~i~~~~gPiia 398 (443)
T PRK13629 321 IIALVAIFKSFFGHYLGTLEGL-NGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANP-NILDLIEAMGAPIIA 398 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHHHHhhhHHHH
Confidence 3334455555444444433332 222211 112234555 4444444444444455555 9999887 4555554
Q ss_pred hhcc
Q psy14002 412 KLSF 415 (454)
Q Consensus 412 ~~~f 415 (454)
..+|
T Consensus 399 ~il~ 402 (443)
T PRK13629 399 SLLC 402 (443)
T ss_pred HHHH
Confidence 4433
No 48
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.17 E-value=0.0011 Score=70.09 Aligned_cols=297 Identities=9% Similarity=-0.008 Sum_probs=142.5
Q ss_pred cccChHHHHHHHHHHhhccccccccchHHHhcchhH-HHHHHHHHHHHHHHHHHHhhhhhccCc-c-CchHHHHHhhcCc
Q psy14002 41 RNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVW-CQVPLGYSLALVVGALLFVKPMREASY-V-TMLDPFQQAYGNR 117 (454)
Q Consensus 41 rsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~-~~~~~~~~l~~~~~~~~~~~~~r~~~~-~-T~~d~l~~Ryg~~ 117 (454)
|+++.+-.....+++.+|++-+......+...|..+ .+..+...++....++-+++.-++... . ...+|.++.||+.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 678888888889999999988877666665556432 222222334445556777777666643 3 6899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCc-hhhhhhh--hhhhhhhhchhcchhhHHHHHHHHHHHHH
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISN-AQPYLKE--PNMTIFSKIDWLGTVETKDYGLWIEGMLL 194 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~-~~~i~i~--~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~ 194 (454)
...+.+....+.......+.........+.. ++. ++.+. ....++. ....+.+ ...-|.|...+.+.+-. .
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~-~p~-~~~~~~~~~~~~~~~~~~~~~~--ln~~Gv~~~~~i~~i~~--~ 154 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYF-FPI-FGGGNNPPSIIGASVLLWCVHF--LVLRGVEGAAFINTITT--I 154 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc-ccCCCcHHHHHHHHHHHHHHHH--HHHhCHHHHHHHHHHHH--H
Confidence 8777766554433221111111111112000 011 11111 1111111 1222333 44456676655555442 1
Q ss_pred HHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCc-hhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHH
Q psy14002 195 LAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKD-YGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAA 273 (454)
Q Consensus 195 il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~a 273 (454)
+.++.++++.+ ..+...+ ++ .......++.+ +.+...+ ...+........+.+........-.-..||+|+.
T Consensus 155 ~ki~~l~~~ii-~~~~~~~--~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~i 227 (468)
T TIGR03810 155 AKLVPLFVFIV-IGIFAFK--GD--TFTNDFWGNAN--GGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDV 227 (468)
T ss_pred HHHHHHHHHHH-HHHHHhc--Hh--hcCcccccccc--ccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccc
Confidence 22222111100 1111111 11 00000000000 0000111 1112122222233333333222222246788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccc-hHHHHHHHhCchHHHHHHHHHHHHHHHhhhhh
Q psy14002 274 YHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNS-VLPLVLKELTPNWVAFFGLGAVTAAVMSSADA 352 (454)
Q Consensus 274 r~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~-~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds 352 (454)
.|+...+......+++...... ....|+. +..+.+. .......+..+++...++..+++.+.+++..+
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~---~g~~~~~--------~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~ 296 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLS---YGIMTQA--------QLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLS 296 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HhCcCHH--------HHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999887777666665443222 1122220 0111111 23345556778888888888888888898888
Q ss_pred HHHhhhhhh
Q psy14002 353 GILSSSSMF 361 (454)
Q Consensus 353 ~l~a~ss~l 361 (454)
.+.+.+-..
T Consensus 297 ~~~~~sR~~ 305 (468)
T TIGR03810 297 WTLLPAEIP 305 (468)
T ss_pred HHHHHHHHH
Confidence 888776553
No 49
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.16 E-value=0.003 Score=66.43 Aligned_cols=298 Identities=9% Similarity=-0.030 Sum_probs=146.6
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRI 118 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~ 118 (454)
.|+++.+.+.+-.+++.+|++-+.+........|-+..+..+-..+.....+.-+++.-.+. ..-...+|.++.+|+..
T Consensus 8 ~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~~ 87 (457)
T PRK10580 8 KRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLA 87 (457)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcHH
Confidence 48899999999999999999888887766666676554322223333344455566665544 34567789999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC-CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHH
Q psy14002 119 GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA-ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAF 197 (454)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g-i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~ 197 (454)
..+......+........+..+.+... +..++ .+.+...++ ..+...+ .-.=|.|.....+.+-.+ +.+
T Consensus 88 gf~~gw~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~l~~~--ln~~gv~~~~~~~~~~~~--~~~ 157 (457)
T PRK10580 88 GYITGWTYCFEILIVAIADVTAFGIYM-----GVWFPTVPHWIWVLS-VVLIICA--VNLMSVKVFGELEFWFSF--FKV 157 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCCCChHHHHHH-HHHHHHH--HHHccchhHHHHHHHHHH--HHH
Confidence 777777666655555556666666555 44432 232222222 2222223 333466766665554321 222
Q ss_pred HHHHHHh-hhhhhheec--cCCCcchhHhhhhhcCccCC-CCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHH-H
Q psy14002 198 GGIPWQC-LSFPFAISN--AQPYLKEPNMTIFSKVDWLG-TVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTK-A 272 (454)
Q Consensus 198 ~~~~ii~-~~~~~~~~~--~~gg~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~-~ 272 (454)
..+++++ +++.+.... ..++..+.. ..+.+ ..-+.+...+........+.+.......+-.-++||+| +
T Consensus 158 ~~l~~~ii~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~ 231 (457)
T PRK10580 158 ATIIIMIVAGIGIIIWGIGNGGQPTGIH------NLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKS 231 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcc------ccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhH
Confidence 2211110 001111111 000000100 01100 01122222222222222333444444445555566665 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhh
Q psy14002 273 AYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADA 352 (454)
Q Consensus 273 ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds 352 (454)
..|+...+......++.... .......|.. +..+.+..+....++...++...++...++.+..|+.++
T Consensus 232 iPrAi~~~~~~~~~~y~~~~---~~~~~~~p~~--------~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 300 (457)
T PRK10580 232 IPRAINSVPMRILVFYVGTL---FVIMSIYPWN--------QVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINS 300 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHheecccC--------CCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Confidence 78887755433333332221 1111112320 111112223333344555666666666677788888888
Q ss_pred HHHhhhhh---hhHH
Q psy14002 353 GILSSSSM---FTRN 364 (454)
Q Consensus 353 ~l~a~ss~---l~~D 364 (454)
.+.+.|-. +++|
T Consensus 301 ~~~~~sR~~~~~ard 315 (457)
T PRK10580 301 DVFGVGRMLHGMAEQ 315 (457)
T ss_pred HHHHHHHHHHHHHhC
Confidence 77776665 3455
No 50
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.10 E-value=0.00096 Score=69.94 Aligned_cols=88 Identities=9% Similarity=-0.003 Sum_probs=59.2
Q ss_pred hccCccCchHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCC----C------chhhhhhhhhh
Q psy14002 99 REASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAI----S------NAQPYLKEPNM 168 (454)
Q Consensus 99 r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi----~------~~~~i~i~~~v 168 (454)
.|.| .+.+..-|..||.+..++.+++..+..+.|.+.|..-.+..++.+. +.+++- + ...+.++...+
T Consensus 72 ~r~G-l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l-~~i~~~~~~~~~~~t~~~~~~~~i~~~l 149 (442)
T TIGR00800 72 AKYG-LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALML-DSIFPGYLHLGNGMTTLELICFIIFWAL 149 (442)
T ss_pred HHhC-CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHhcccccccCCcccHHHHHHHHHHHHH
Confidence 4444 5667788899999987788888889999999999887765441111 333332 1 12334444455
Q ss_pred hhhhhchhcchhhHHHHHHHHH
Q psy14002 169 TIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 169 ~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
.+.. +..+|.|..-..+..-
T Consensus 150 ~~~~--~~~~g~~~~~~~~~~a 169 (442)
T TIGR00800 150 VLVF--LFFFGYKIRHLFEWLA 169 (442)
T ss_pred HHHH--HHcCHHHHHHHHHHHH
Confidence 5555 7789999888777776
No 51
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.10 E-value=0.0022 Score=66.21 Aligned_cols=120 Identities=15% Similarity=0.078 Sum_probs=83.4
Q ss_pred HHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHHHHHHH
Q psy14002 54 ATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFW 133 (454)
Q Consensus 54 at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~ 133 (454)
.+.++.+.+....+.+.++|+.=.|..+-..+..++.-..-+ |+-.....+.+|-.++||+++......+...+..+..
T Consensus 28 ~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~a-rLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at 106 (416)
T COG1914 28 VAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSA-RLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIAT 106 (416)
T ss_pred HhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 345677777777777788887766643322222222211122 2212235778999999999999878877777777888
Q ss_pred HHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhh
Q psy14002 134 IASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVE 181 (454)
Q Consensus 134 ~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~ 181 (454)
-.+|+.|.+.-+ +.++++|...+.++.++.+.+- -..+|.|
T Consensus 107 ~iae~~G~aial-----~ll~~ip~~~g~iItav~~~ii--l~~~~~r 147 (416)
T COG1914 107 DIAEVAGIAIAL-----NLLFGIPLIIGAVITAVDVLII--LLLKGYR 147 (416)
T ss_pred HHHHHHHHHHHH-----HHHcCChHHHHHHHHHHHHHHH--HHhcchH
Confidence 889999999999 9999999999999888877764 3344344
No 52
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.08 E-value=0.0022 Score=69.27 Aligned_cols=331 Identities=12% Similarity=0.011 Sum_probs=162.4
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHh-cchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFT-TGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNR 117 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~-~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~ 117 (454)
.|+++.+-+.+.-++..+|++.+.-....+.. .|-+..+..+-.++...+.++-+++.-.+. +.-+...|.++.+|+.
T Consensus 27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~ 106 (557)
T TIGR00906 27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGEL 106 (557)
T ss_pred hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcH
Confidence 68999999999999999998888766555543 465443322222334444555666665544 3346677888889988
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhhhccc---cc----cccCCC--------chhhhhhhhhhhhhhhchhcchhhH
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVVDTLC---LS----FPFAIS--------NAQPYLKEPNMTIFSKIDWLGTVET 182 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~---~~----~~~gi~--------~~~~i~i~~~v~~~Y~~t~~GGl~a 182 (454)
...+.+...++......+....+.+..++.+. ++ ...+.+ ...++.+. +.... ...-|.|.
T Consensus 107 ~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii--~l~~~--ln~~Gik~ 182 (557)
T TIGR00906 107 WAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLI--LLLAV--LLSFGVKE 182 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHH--HHHHH--HHHhchhH
Confidence 77777766665555444444333333321110 00 001111 11111111 11222 34456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHHH
Q psy14002 183 KDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQ 262 (454)
Q Consensus 183 v~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~q 262 (454)
..+.+.+-. .+.+.. +++. +.....+ ++.++....... + .+++.+.+...++.......+.+...-...+
T Consensus 183 s~~v~~i~~--~iki~~-l~~~--iv~g~~~--~~~~~~~~~~~~--~-~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~ 252 (557)
T TIGR00906 183 SAWVNKIFT--AINILV-LLFV--IIAGFTK--ADVANWSITEEK--G-AGGFMPYGFTGVLSGAATCFFAFIGFDAIAT 252 (557)
T ss_pred HHHHHHHHH--HHHHHH-HHHh--hhHHHhh--CCchhccccccc--c-CCCCCCcchHHHHHHHHHHHHHHhhHHHHHH
Confidence 666555442 122222 1111 1111111 111111100000 0 0112222222222222222333333344444
Q ss_pred HHhccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHH
Q psy14002 263 RVLSLRSTK-AAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGA 341 (454)
Q Consensus 263 r~~aaks~~-~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~ 341 (454)
-.-..||+| +..|+...+......+++...+ .+. ...|. +..+++..++....+...++...++.++
T Consensus 253 ~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~-~l~--~~vp~---------~~l~~~~p~~~a~~~~g~~~~~~ii~~~ 320 (557)
T TIGR00906 253 TGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSA-ALT--LMMPY---------YLLDPDAPFPVAFEYVGWGPAKYIVAVG 320 (557)
T ss_pred hHHhccCccccccHHHHHHHHHHHHHHHHHHH-HHh--ccccH---------HHhCcCcHHHHHHHHcCchHHHHHHHHH
Confidence 455677754 5888888877766666654332 111 12232 1123445555555555566777777777
Q ss_pred HHHHHHhhhhhHHHhhhhhh---hHHHHHhhcCCCCCCC----eehhHHHHHHHHHHHhcCC
Q psy14002 342 VTAAVMSSADAGILSSSSMF---TRNIYKLSFRPKLTPN----WVAFFGLGAVTAAVMSSAD 396 (454)
Q Consensus 342 ~laA~mST~ds~l~a~ss~l---~~Di~~~~~~~~~s~~----Ri~~~~i~i~a~~la~~~~ 396 (454)
.+.+..++..+.+.+.+-.+ ++|=.-|-.-.+.++| ..++++.++++.++++..+
T Consensus 321 ~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~ 382 (557)
T TIGR00906 321 ALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFD 382 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 77777777777776655433 4443322111122333 5567777888877776654
No 53
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.07 E-value=0.0044 Score=65.47 Aligned_cols=303 Identities=9% Similarity=-0.099 Sum_probs=146.4
Q ss_pred cccChHHHHHHHHHHhhccccccccchHHHhcchhH-HHHHHHHHHHHHHHHHHHhhhhhccC--ccCchHHHHHhhcCc
Q psy14002 41 RNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVW-CQVPLGYSLALVVGALLFVKPMREAS--YVTMLDPFQQAYGNR 117 (454)
Q Consensus 41 rsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~-~~~~~~~~l~~~~~~~~~~~~~r~~~--~~T~~d~l~~Ryg~~ 117 (454)
|+++.+.+.+..+++.+|++-+.+.....-..|-.+ .+..+...+.....+.-+++.-++.. .-...++.++.+|+.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~ 81 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPA 81 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcH
Confidence 778888888888899999888888877777777533 33222223333444555666655443 124568999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC-CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHH
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA-ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLA 196 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g-i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il 196 (454)
...+......+..+...+.+..+.+..+ +...+ .+.+....+.. +.... .-.-|.|...+.+.+-.+ +.
T Consensus 82 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~--in~~gv~~~~~~~~~~~~--~k 151 (478)
T TIGR00913 82 FGFAVGWNYWLQWLIVLPLELVTASMTI-----QYWTDKVNPAVWIAIFY-VFIVI--INLFGVKGYGEAEFWFSS--IK 151 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHcCCCCCHHHHHHHHH-HHHHH--HHHhcchHHHHHHHHHHH--HH
Confidence 8878877777777666777777777666 44332 22222111111 11112 223344444444432211 11
Q ss_pred HHHHH-HHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCC----chhhHHHHHHHHHHhhhcchhHHHHHhccCCH-
Q psy14002 197 FGGIP-WQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETK----DYGLWIEGMLLLAFGGIPWQSYFQRVLSLRST- 270 (454)
Q Consensus 197 ~~~~~-ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~- 270 (454)
++.++ ++. +.+.... ++..+-.....++....+.+.+. ....+........+.+.......+-.-+.||+
T Consensus 152 i~~l~~~ii--~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~ 227 (478)
T TIGR00913 152 ILAIIGFII--LSIILNC--GGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR 227 (478)
T ss_pred HHHHHHHHH--HHHHHHH--cCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh
Confidence 11101 110 1111111 11110000000000000111111 12222222223334444555555666677875
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-CCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhh
Q psy14002 271 KAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTY-GKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSS 349 (454)
Q Consensus 271 ~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~-~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST 349 (454)
|+..|+...+......+++...+ ......|....+. .........+..+....++...++...++...++.+.+++
T Consensus 228 r~iPrai~~~~~~~~~~Y~l~~~---~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~ 304 (478)
T TIGR00913 228 KSIPRAAKRTFWRILVFYILTLF---LIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSA 304 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHH
Confidence 57888888877666555543221 1111223210000 0000000011222233344445677767777777788888
Q ss_pred hhhHHHhhhhh
Q psy14002 350 ADAGILSSSSM 360 (454)
Q Consensus 350 ~ds~l~a~ss~ 360 (454)
..+.+.+.|-.
T Consensus 305 ~~~~~~~~sR~ 315 (478)
T TIGR00913 305 ANSSLYASSRT 315 (478)
T ss_pred HHhhHHHHHHH
Confidence 88888776655
No 54
>PRK10746 putative transport protein YifK; Provisional
Probab=98.06 E-value=0.0036 Score=65.99 Aligned_cols=293 Identities=10% Similarity=-0.065 Sum_probs=148.2
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNR 117 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~ 117 (454)
.|+++.+.+.+-.+++.+|++-|+|.....-..|-+..+ +.++. +.....+.-+++.-.+. ..-+..++.++.+|+.
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g-~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~ 87 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAG-LFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPF 87 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcH
Confidence 488999999999999999999999988877777764332 22222 22222334455554433 3346789999999998
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC-CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHH-HH
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA-ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGML-LL 195 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g-i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~-~i 195 (454)
..........+.......++..+.+..+ +..++ .+.+....+.. +.... . .++++-+...+|..+ .+
T Consensus 88 ~Gf~~gw~~~~~~~~~~~~~~~a~~~~l-----~~~~p~~~~~~~~~~~~-~~~~~--l---N~~gv~~~~~~e~~~~~~ 156 (461)
T PRK10746 88 FGYLTAWSYWFMWMAVGISEITAIGVYV-----QFWFPEMAQWIPALIAV-ALVAL--A---NLAAVRLYGEIEFWFAMI 156 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHccCCCchHHHHHHHH-HHHHH--H---HHHhHHHHHHHHHHHHHH
Confidence 8877777777666666777888877777 55543 33332222211 11111 2 344444444444210 01
Q ss_pred HHHHHH-HHhhhhhhheeccCCCcchhHhhhhhcCccCCC--CCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHH-
Q psy14002 196 AFGGIP-WQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGT--VETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTK- 271 (454)
Q Consensus 196 l~~~~~-ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~- 271 (454)
.++.+. ++++.++..... .+..++ .... .++.++ ..++++..+........+.+.......+-.-++||+|
T Consensus 157 ki~~i~~~ii~~~~~~~~~-~~~~~~-~~~~---~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k 231 (461)
T PRK10746 157 KVTTIIVMIVIGLGVIFFG-FGNGGQ-SIGF---SNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQV 231 (461)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCCC-CCcc---ccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhh
Confidence 111100 100001111111 010000 0000 011111 1122322222222222333444445556666777764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhh
Q psy14002 272 AAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSAD 351 (454)
Q Consensus 272 ~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~d 351 (454)
+..|+..........+++...+. .....|.. +..+.+..+.....+...++...++...++.+..|+.+
T Consensus 232 ~iP~Ai~~~~~~i~~~yv~~~~~---~~~~~p~~--------~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n 300 (461)
T PRK10746 232 TLRSAVGKVLWRILIFYVGAIFV---IVTIFPWN--------EIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCN 300 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HeeeeCCC--------CCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHH
Confidence 67777655433333333322111 11123321 11123344555556666666667777777888899999
Q ss_pred hHHHhhhhh
Q psy14002 352 AGILSSSSM 360 (454)
Q Consensus 352 s~l~a~ss~ 360 (454)
+.+.+.|-+
T Consensus 301 ~~~~~~sR~ 309 (461)
T PRK10746 301 SGMYSCGRM 309 (461)
T ss_pred HHHHHHHHH
Confidence 988876654
No 55
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.04 E-value=0.003 Score=65.49 Aligned_cols=292 Identities=14% Similarity=0.069 Sum_probs=136.2
Q ss_pred ChHHHHHHHHHHhhccccccccchHHHhcchhHH-HHHHHHHHHHHHHHHHHhhhhhc-cCccCchHHHHHhhcCcchhH
Q psy14002 44 GLFVGVLTLTATWVGGGYINATAEALFTTGLVWC-QVPLGYSLALVVGALLFVKPMRE-ASYVTMLDPFQQAYGNRIGGL 121 (454)
Q Consensus 44 ~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~-~~~~~~~l~~~~~~~~~~~~~r~-~~~~T~~d~l~~Ryg~~~~~~ 121 (454)
++|-.....+++.++++.+... .....|.... ++.++..+.....++-+++.-++ .+.-...++.++-+|++.+.+
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP--AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH--HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 3444555555555665554432 3333455433 33344333323445555555443 356678899999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCC--c--hhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHH
Q psy14002 122 LFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAIS--N--AQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAF 197 (454)
Q Consensus 122 ~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~--~--~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~ 197 (454)
......+......++.....+..+ ...++-+ . +...++..++..+......-|.|...+...+-.+ +.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~i 152 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYL-----LSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTV--IKI 152 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----TTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH--HHH
T ss_pred ccceeEEEeeccccccccchhhhh-----hhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhh--hhh
Confidence 777777766666555544444444 3333211 1 1222222222211101334456666655555532 222
Q ss_pred HHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHH
Q psy14002 198 GGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLS 277 (454)
Q Consensus 198 ~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~ 277 (454)
+..+++. +...... ...+.-...-.+.+++.++ +............+.+.......+-.=+.|+ |+.+|+.
T Consensus 153 ~~~l~~~--i~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai 223 (426)
T PF13520_consen 153 VIPLLVL--IILGIVS--FSFSGFNSLSFSLSTFFPS----GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAI 223 (426)
T ss_dssp HHHHHHH--HHHHHHS--TTCCHHH----SHSCSSCS----SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHH
T ss_pred hhhhhhh--eeEEEee--ecccccccccccccccCCc----cccchhhHHHHHHhhcccccccccccccccc-hhheeec
Confidence 1101111 1111111 1111111110001111111 1111122222222333333322222233777 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhh
Q psy14002 278 TLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSS 357 (454)
Q Consensus 278 ~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ 357 (454)
.++......+++...+ ......|+. +....++.......+.++..+++..-++.....-+.+++..+.+.+.
T Consensus 224 ~~~~~~~~i~y~l~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 295 (426)
T PF13520_consen 224 IISIIIVAIIYILFSI---ALLGALPDD-----ELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGA 295 (426)
T ss_dssp HHHHHHHHHHHHHHHH---HHHTTSTHC-----HHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhh---eeeecccch-----hhhcccccccccchhhccccccccccccccccccccccccchhhcch
Confidence 9988877766655332 222233331 00001111223556666666667777777777778888888888777
Q ss_pred hhhh
Q psy14002 358 SSMF 361 (454)
Q Consensus 358 ss~l 361 (454)
+..+
T Consensus 296 sR~l 299 (426)
T PF13520_consen 296 SRLL 299 (426)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 6654
No 56
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.02 E-value=0.0005 Score=70.30 Aligned_cols=312 Identities=14% Similarity=0.057 Sum_probs=159.3
Q ss_pred HHHHHHhhccccccccchHHHhcchhHHHHHHHHHH---HHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHH
Q psy14002 50 LTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSL---ALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPA 126 (454)
Q Consensus 50 ~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l---~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~ 126 (454)
+.+++-.+|++-++=.|..+++.|-.+.+..+++.+ +.++.+..-.++ .| .-.+.+++|+|++...+..+..
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~---~g--G~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALAL---VG--GGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeee---cC--CCHHHHHHHhChHHHHHHHHHH
Confidence 467788899999999999999999765554455544 344444432222 22 3678999999999866654443
Q ss_pred HHHHHH-----HHHHHHHhhhHhhhccccccccCCCc-hhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHH-HHHHHHH
Q psy14002 127 LCGDVF-----WIASVLSSLGSVVDTLCLSFPFAISN-AQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGM-LLLAFGG 199 (454)
Q Consensus 127 ~~~~~~-----~~~~ql~~~g~i~~~~~~~~~~gi~~-~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~-~~il~~~ 199 (454)
.+..-+ ..++--+..+ + +.+++.+. .....+..++...- +..=-+|..-..|.+|-. ..++++.
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~--i-----~p~~~~~~~~~~l~i~siiff~i--~~~l~~~~~k~~~~iGk~LTP~lLi~ 147 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG--I-----APLLHSPTSLLALFIFSLIFFAV--VLLLSLNPSKLIDRVGKFLTPALLVT 147 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH--H-----HhccCcccchHHHHHHHHHHHHH--HHHHHcCcccHHHHhHHHHHHHHHHH
Confidence 332222 1222222222 2 34444321 11111111111111 222235666677887742 1122222
Q ss_pred HHHHhhhhhhheeccCCCcchhHhhhhhcCccCC-CCCCCch-hhHHHH--HHHHHHhhhcchhHHHHHhccCCHHHHHH
Q psy14002 200 IPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLG-TVETKDY-GLWIEG--MLLLAFGGIPWQSYFQRVLSLRSTKAAYH 275 (454)
Q Consensus 200 ~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~-~~~~~~~-~~~~~~--~~~~~~~~~~~p~~~qr~~aaks~~~ar~ 275 (454)
+.++ +.....+-.|+..+.. .++.+ ..-..+. ..+.++ .-...++....... |-...||+|+..|
T Consensus 148 l~~l---ii~g~~~p~g~~~~~~------~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i--~~~g~~~~~~~~~ 216 (378)
T TIGR00796 148 LLAL---IIKALLWPAGPILAAS------GAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAI--RSRGVTKPKKITK 216 (378)
T ss_pred HHHH---HHHHHHcCCCCcCCcc------cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCHHHHHH
Confidence 1111 1111122112211110 01100 0000000 000010 01112222222222 3345677777666
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhh
Q psy14002 276 LSTLSALLCF----SMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSAD 351 (454)
Q Consensus 276 ~~~~~~~~~~----~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~d 351 (454)
....+++... .++..+..+|....... .+..|++..+-...++.+++.-.-++.+.+.-|++.|+.
T Consensus 217 ~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~----------~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~i 286 (378)
T TIGR00796 217 YTIKAGLIAAVLLAFIYLSLFYLGATSAAAA----------GDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAV 286 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHhhh----------cccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Confidence 6666665332 22333333332221111 112357788888899999998888888889999999999
Q ss_pred hHHHhhhhhhhHHHHHhhcCCCCCCCeehhHHHHHHHHHHHhcCCchHHHHH
Q psy14002 352 AGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSS 403 (454)
Q Consensus 352 s~l~a~ss~l~~Di~~~~~~~~~s~~Ri~~~~i~i~a~~la~~~~~~i~~l~ 403 (454)
+.+.+++.-+.+.. |+ .+-|..++...+.+..++....++++++.
T Consensus 287 Gli~~~a~~f~~~~------~k-~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~ 331 (378)
T TIGR00796 287 GLTTACSEYFHKLV------PK-LSYKTWVIVFTLFSFIVANLGLTQIISIS 331 (378)
T ss_pred HHHHHHHHHHHHhc------CC-CCHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999666654442 21 11177788888899999998887888753
No 57
>PRK10836 lysine transporter; Provisional
Probab=97.98 E-value=0.017 Score=61.30 Aligned_cols=312 Identities=12% Similarity=-0.052 Sum_probs=142.5
Q ss_pred CcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhH-HHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHH
Q psy14002 32 GEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVW-CQVPLGYSLALVVGALLFVKPMREA-SYVTMLDP 109 (454)
Q Consensus 32 ~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~-~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~ 109 (454)
+.||.- =.|+++.+-..+-.+++.+|++-|.+........|-.+ .+..+...+...+.+.-+++.-.+. +.-...+|
T Consensus 7 ~~~~~~-l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y 85 (489)
T PRK10836 7 TTEAPG-LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATY 85 (489)
T ss_pred cCCccc-ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Confidence 445532 25899999999999999999999999888877777643 3322222233334445556554443 33344555
Q ss_pred HHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC-CCchhhhhhhhhhhhhhhchhcchhhHHHHHHH
Q psy14002 110 FQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA-ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLW 188 (454)
Q Consensus 110 l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g-i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~ 188 (454)
.++.+|+..+.+......+......+.+..+....+ +..++ .+.+.... ..++.+.. .-.=|.|.....+.
T Consensus 86 ~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~--lN~~gv~~~~~~~~ 157 (489)
T PRK10836 86 GQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVM-----SWWFPDTPGWIWSA-LFLGVIFL--LNYISVRGFGEAEY 157 (489)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcCCCCchHHHHH-HHHHHHHH--HHHHcchhhhhhHH
Confidence 555566655555555444433333344444444444 43332 22221111 11111122 22335555544443
Q ss_pred HHHHHHHHHHHH-HHHhhhhhhheeccCCCcchhHhhhhhcCccCC--CCCCCchhhHHHHHHHHHHhhhcchhHHHHHh
Q psy14002 189 IEGMLLLAFGGI-PWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLG--TVETKDYGLWIEGMLLLAFGGIPWQSYFQRVL 265 (454)
Q Consensus 189 iQ~~~~il~~~~-~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~ 265 (454)
+..+ +.+..+ .++.+.+........++ +.. .. .++.. ...+.+....++......+.+..+....+-.=
T Consensus 158 ~~~~--~ki~~~~~~i~~~~~~~~~~~~~~-~~~---~~--~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~ 229 (489)
T PRK10836 158 WFSL--IKVTTVIVFIIVGVLMIIGIFKGA-EPA---GW--SNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAG 229 (489)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHcCCCCC-CCC---cc--ccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3311 111110 01000011100000011 000 00 01100 01112222222222222344455555666666
Q ss_pred ccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHH
Q psy14002 266 SLRST-KAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSA-IPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVT 343 (454)
Q Consensus 266 aaks~-~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~-~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~l 343 (454)
+.||+ |+..|+...+......+++...+ ......|.. ......+. ....+..+.....+...++...++...++
T Consensus 230 E~knP~r~iPrAi~~~~~~v~~~Yvl~~~---~~~~~vp~~~~~~~~~~~-~~~~~sp~~~~~~~~g~~~~~~ii~~~il 305 (489)
T PRK10836 230 ESEDPAKNIPRAVRQVFWRILLFYVFAIL---IISLIIPYTDPSLLRNDV-KDISVSPFTLVFQHAGLLSAAAVMNAVIL 305 (489)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHheecCCCChhhhcccc-ccccCCcHHHHHHHcCChhHHHHHHHHHH
Confidence 77887 46788887665555555443321 111122310 00000000 00112223334444444566667777778
Q ss_pred HHHHhhhhhHHHhhhhhh---hHH
Q psy14002 344 AAVMSSADAGILSSSSMF---TRN 364 (454)
Q Consensus 344 aA~mST~ds~l~a~ss~l---~~D 364 (454)
.+.+|+.++.+.+.|-++ +||
T Consensus 306 ~a~~~~~n~~~~~~sR~l~a~Ard 329 (489)
T PRK10836 306 TAVLSAGNSGMYASTRMLYTLACD 329 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888999999888777653 455
No 58
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.98 E-value=0.011 Score=61.95 Aligned_cols=283 Identities=11% Similarity=-0.051 Sum_probs=133.8
Q ss_pred HHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcchhHHHHHHHHHHHH
Q psy14002 54 ATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRIGGLLFLPALCGDVF 132 (454)
Q Consensus 54 at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~ 132 (454)
++.+|++-|++......+.|-...+..+-..+...+.+.-+++.-.+. +.-...++.++.||+...........+..+.
T Consensus 5 g~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~ 84 (446)
T PRK10197 5 AGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVL 84 (446)
T ss_pred cchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 456778888886666666676544322222233333455556554443 3347899999999999888888777776666
Q ss_pred HHHHHHHhhhHhhhccccccccC-CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Q psy14002 133 WIASVLSSLGSVVDTLCLSFPFA-ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAI 211 (454)
Q Consensus 133 ~~~~ql~~~g~i~~~~~~~~~~g-i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~ 211 (454)
....+..+.+..+ +...+ .+.+....+...+... .-.-|.|.....+.+-.. +.++. ++..+...+..
T Consensus 85 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~---lN~~gv~~~~~i~~~~~~--~ki~~-li~~ii~~~~~ 153 (446)
T PRK10197 85 VIPLEANIAAMIL-----HSWVPGIPIWLFSLVITLALTG---SNLLSVKNYGEFEFWLAL--CKVIA-ILAFIFLGAVA 153 (446)
T ss_pred HHHHHHHHHHHHH-----HhccccCcHHHHHHHHHHHHHH---HHHHhhHHHhhhHHHHHH--HHHHH-HHHHHHHHHHH
Confidence 6666666666665 44432 2222211111111111 122244444333333211 11121 11110011111
Q ss_pred eccCCCcchhH-hhhhhcCccC-CCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHH-HHHHHHHHHHHHHHHHH
Q psy14002 212 SNAQPYLKEPN-MTIFSKVDWL-GTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTK-AAYHLSTLSALLCFSMA 288 (454)
Q Consensus 212 ~~~~gg~~~l~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~-~ar~~~~~~~~~~~~~~ 288 (454)
.. |+.+.-. .... +.+. +...+.++..+........+.+..+....+-.-+.||+| +..|+...+......++
T Consensus 154 ~~--g~~~~~~~~~~~--~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Y 229 (446)
T PRK10197 154 IS--GFYPYAEVSGIS--RLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFY 229 (446)
T ss_pred hc--CCCCCCCCCcch--hcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH
Confidence 11 2111000 0000 0010 111122322233233333445555666666666777765 57787765544444444
Q ss_pred HHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhh
Q psy14002 289 IPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMF 361 (454)
Q Consensus 289 ~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l 361 (454)
+...+. .....|.. .++.+....+....++...++..-++.+.++.+..|+.++.+.+.|-.+
T Consensus 230 il~~~~---~~~~~p~~-------~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l 292 (446)
T PRK10197 230 LCSIFV---VVALIPWN-------MPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRML 292 (446)
T ss_pred HHHHHH---HheecCcC-------cccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432221 11122321 1111111223334455555677677777777888899999888877654
No 59
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.97 E-value=0.012 Score=61.56 Aligned_cols=324 Identities=11% Similarity=0.053 Sum_probs=141.2
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchh-HHH--HHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLV-WCQ--VPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYG 115 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~-~~~--~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg 115 (454)
.|+++.+-...-.+++.++++.+.......-..|-. ..+ +.++ .+.....++-+++.-++. +.-....|.++.||
T Consensus 7 ~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~-~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~g 85 (445)
T PRK11357 7 QRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIG-GLIVIPQMCVYAELSTAYPENGADYVYLKNAGS 85 (445)
T ss_pred cccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCceeeHHHhcC
Confidence 588999988888888878777665544333333432 122 2222 222333445555544332 23355678889999
Q ss_pred CcchhHHHHHHHHH-HHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHH-H
Q psy14002 116 NRIGGLLFLPALCG-DVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGM-L 193 (454)
Q Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~-~ 193 (454)
+....+......+. .....+.+..+.+..+ +..++.+......+...+..+. +.. ..|++-....+|-+ .
T Consensus 86 ~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~-----~~~~~~~~~~~~~~~~~~~~~~--~~l-n~~gv~~~~~v~~~~~ 157 (445)
T PRK11357 86 RPLAFLSGWASFWANDAPSLSIMALAIVSNL-----GFLTPIDPLLGKFIAAGLIIAF--MLL-HLRSVEGGAAFQTLIT 157 (445)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCCchHHHHHHHHHHHHHH--HHH-HHhhhhHHHHHHHHHH
Confidence 88765555543322 2222333334444444 4445544432222222222222 222 34444444445522 1
Q ss_pred HHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCc-hhhHHHHHHHHHHhhhcchhHHHHHhccCCH-H
Q psy14002 194 LLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKD-YGLWIEGMLLLAFGGIPWQSYFQRVLSLRST-K 271 (454)
Q Consensus 194 ~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~-~ 271 (454)
.+.++..+++.+ +.+...+ .+++.+ . .+. ..+..+ ...+........+.+..+....+-.=+.||+ |
T Consensus 158 ~~~~~~l~~~ii-~g~~~~~-~~~~~~---~----~~~--~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r 226 (445)
T PRK11357 158 IAKIIPFTIVIG-LGIFWFK-AENFAA---P----TTT--AIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGK 226 (445)
T ss_pred HHHHHHHHHHHH-HHHHHcC-CccccC---C----Ccc--cccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc
Confidence 111222111110 1111111 111110 0 000 001111 1122211222233333444444444456775 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHh--CchHHHHHHHHHHHHHHHhh
Q psy14002 272 AAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKEL--TPNWVAFFGLGAVTAAVMSS 349 (454)
Q Consensus 272 ~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~--lp~~l~gl~~~~~laA~mST 349 (454)
+..|+...+......+++.... ......|. .+..+.+..++....+. ++++...++....+.+.+++
T Consensus 227 ~iP~Ai~~~~~i~~~~Y~l~~~---~~~~~~~~--------~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 295 (445)
T PRK11357 227 TMPRALIGSCLLVLVLYTLLAL---VISGLMPF--------DKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGS 295 (445)
T ss_pred cchHHHHHHHHHHHHHHHHHHH---HHHhcCCH--------HHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 6788888877766655544332 11112221 01112233344444432 45554444555555566777
Q ss_pred hhhHHHhhhhh---hhHHH-HHhhcCCCCCCC----eehhHHHHHHHHHHHhcC
Q psy14002 350 ADAGILSSSSM---FTRNI-YKLSFRPKLTPN----WVAFFGLGAVTAAVMSSA 395 (454)
Q Consensus 350 ~ds~l~a~ss~---l~~Di-~~~~~~~~~s~~----Ri~~~~i~i~a~~la~~~ 395 (454)
..+.+.+.+-. .++|= ..+.+. +.++| +.++++.++++..+.+..
T Consensus 296 ~~~~~~~~sR~~~a~ardg~lp~~~~-~v~~~~~tP~~a~l~~~~~~~~~~~~~ 348 (445)
T PRK11357 296 LSSCVMYQPRLEYAMAKDNLFFKCFG-HVHPKYNTPDVSIILQGALGIFFIFVS 348 (445)
T ss_pred HHHHHHhhhhHHHHHHhcCCchHHHH-HhCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 77776665533 23441 122211 22222 556666677776666543
No 60
>PRK11375 allantoin permease; Provisional
Probab=97.96 E-value=0.0052 Score=65.16 Aligned_cols=103 Identities=14% Similarity=-0.014 Sum_probs=57.4
Q ss_pred CcccChHHHHHHHHHHhhccccc-cccchHHHhcchhHHHHHHHHHHHHHHHHHHHh---hhhhccCccCchHHHHHhhc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYI-NATAEALFTTGLVWCQVPLGYSLALVVGALLFV---KPMREASYVTMLDPFQQAYG 115 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~-~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~---~~~r~~~~~T~~d~l~~Ryg 115 (454)
.|+-+++-...--++..++-.++ ++.... ..|++.....+...+|..+...+.. ..=.|. ..+.+-.-|.-||
T Consensus 24 ~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l--~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-Gl~~~v~sR~sFG 100 (484)
T PRK11375 24 QRTWKTFNYFTLWMGSVHNVPNYVMVGGFF--ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKY-GVPFAMILRASYG 100 (484)
T ss_pred ccCCcHHHHHHHHHHHhccHHHHHHHHHHH--HccchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCChhHhHHHHHc
Confidence 45566655544444444332222 221222 3566544433444444444333322 222333 3667778889999
Q ss_pred CcchhHHHHHH-HHHHHHHHHHHHHhhhHhh
Q psy14002 116 NRIGGLLFLPA-LCGDVFWIASVLSSLGSVV 145 (454)
Q Consensus 116 ~~~~~~~~~~~-~~~~~~~~~~ql~~~g~i~ 145 (454)
.+..++.+++- ++..++|.+.|..-.|..+
T Consensus 101 ~~Gs~l~~~~rai~~~igW~~vqt~~~g~al 131 (484)
T PRK11375 101 VRGALFPGLLRGGIAAIMWFGLQCYAGSLAL 131 (484)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88866666666 4677899999988777666
No 61
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.90 E-value=0.0047 Score=63.61 Aligned_cols=111 Identities=13% Similarity=-0.052 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCC-ch
Q psy14002 81 LGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAIS-NA 159 (454)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~-~~ 159 (454)
+|..++.++.+ +.+..=.|.| .+.+-.-|..||.+..++.+++..+..+.|.+.|....|..++... +..+|.+ ..
T Consensus 37 lG~~i~~~~~~-l~~~~G~~~G-l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~-~~~~~~~~~~ 113 (386)
T TIGR02358 37 LGHLVGVLLLS-AAGVIGADTG-LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLG-GRLFGEESPM 113 (386)
T ss_pred HHHHHHHHHHH-HHHHhhcccC-cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCchH
Confidence 44444443332 2333333444 6667788889999988888888889999999999988887772221 2233432 23
Q ss_pred hhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHH
Q psy14002 160 QPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGG 199 (454)
Q Consensus 160 ~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~ 199 (454)
..+.+...+. .. +..-|.|...+-+.+-. .++.+.
T Consensus 114 ~~~~i~~~l~-~~--~~~~G~~~i~~~~~~~~--~~~~i~ 148 (386)
T TIGR02358 114 LWILIVGILV-TL--WLLSGPLAFVWLNNWSV--WLLLIA 148 (386)
T ss_pred HHHHHHHHHH-HH--HHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3344433333 33 56679999988888873 344443
No 62
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.88 E-value=0.0014 Score=67.93 Aligned_cols=321 Identities=12% Similarity=0.016 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHH---HHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhH
Q psy14002 45 LFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSL---ALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGL 121 (454)
Q Consensus 45 ~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l---~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~ 121 (454)
.+.+++.++|-.+||+-++=.|..+++.|-.+.+..+|+.+ +..+.+..-.-+ .| .+. |=+.+|-|++...+
T Consensus 10 ~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~---~~-g~~-~~l~~rv~~~f~~~ 84 (439)
T PRK15433 10 IIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAK---VG-GGV-DSLSTPIGKVAGVL 84 (439)
T ss_pred HHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh---cC-CCH-HHHhhhcchHHHHH
Confidence 56789999999999999999999999999888775565544 444444332222 22 233 44556667666544
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHH-HHHHHHHH
Q psy14002 122 LFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGM-LLLAFGGI 200 (454)
Q Consensus 122 ~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~-~~il~~~~ 200 (454)
...+..+..-+..+ .=...+.-+| +.++.+++-+ +...++..++...- +..=-+|-.-..|.+-=. ..++++.+
T Consensus 85 f~~~i~l~IGP~~a-iPRtaavsfE-m~i~p~~~~~-~~~~~ifs~iFF~i--~~~l~l~p~klvd~iGK~LTP~LL~~l 159 (439)
T PRK15433 85 LATVCYLAVGPLFA-TPRTATVSFE-VGIAPLTGDS-ALPLFIYSLVYFAI--VILVSLYPGKLLDTVGNFLAPLKIIAL 159 (439)
T ss_pred HHHHHHHHHhhccc-cCCccccchh-heeeccCCcc-cHHHHHHHHHHHHH--HHHHHcChhhHHHHhHHHHHHHHHHHH
Confidence 43322222211110 0011111110 1113334321 12222221111111 222246666666666421 22333331
Q ss_pred HHHhhhhhhheeccCCCcchhHhhhhhcCccCC-CCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHH
Q psy14002 201 PWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLG-TVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTL 279 (454)
Q Consensus 201 ~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~ 279 (454)
.++ +.....+-.|......+... +.++.. ..++.+-..-+ -...++.+.-... |....||+|+.+|....
T Consensus 160 ~~l---ii~~i~~p~g~~~~~~~~y~-~~~f~~Gf~eGY~TMDal---aal~Fg~iii~~i--~~~G~~~~~~~~k~t~~ 230 (439)
T PRK15433 160 VIL---SVAAIVWPAGSISTATEAYQ-NAAFSNGFVNGYLTMDTL---GAMVFGIVIVNAA--RSRGVTEARLLTRYTVW 230 (439)
T ss_pred HHH---HHHHHhcCCCCCCCcchhhh-hhhHHHHHHhhHHHHHHH---HHHHHHHHHHHHH--HHcCCCCHHHHHHHHHH
Confidence 111 11122221232211111111 111211 11111101111 1123333333333 34445677777666665
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHH
Q psy14002 280 SALL----CFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGIL 355 (454)
Q Consensus 280 ~~~~----~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~ 355 (454)
+++. ...++..+..+|......++ +..|+.+..-..+.+.++++...++...++.|++.|+-+...
T Consensus 231 ag~ia~~~L~~vY~gL~~lGa~s~~~~~----------~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~ 300 (439)
T PRK15433 231 AGLMAGVGLTLLYLALFRLGSDSASLVD----------QSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTC 300 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccc----------CCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 34444444444432211111 112445555567889999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhcCCCCCCCeehhHHHHHHHHHHHhcCCchHHHH
Q psy14002 356 SSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSS 402 (454)
Q Consensus 356 a~ss~l~~Di~~~~~~~~~s~~Ri~~~~i~i~a~~la~~~~~~i~~l 402 (454)
+++.-+.+..-.+| |....++.+++..++..+-++++.+
T Consensus 301 a~a~~f~~~~~isY--------~~~v~i~~l~S~~lSn~G~~~II~~ 339 (439)
T PRK15433 301 ACAEFFAQYVPLSY--------RTLVFILGGFSMVVSNLGLSQLIQI 339 (439)
T ss_pred HHHHHHHhhcCCcH--------HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 98888766542222 7788889999999999888787765
No 63
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.72 E-value=0.071 Score=55.44 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=77.0
Q ss_pred HHHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhccCc--cCchHHHHHhhcCcchhHHHH
Q psy14002 48 GVLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMREASY--VTMLDPFQQAYGNRIGGLLFL 124 (454)
Q Consensus 48 ~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~~~~--~T~~d~l~~Ryg~~~~~~~~~ 124 (454)
..+.+..|.+|++.+ ..|-..-..|+...+ ..+..........+.+.+-..+.+. .+..|..|+.+|++.+.+..+
T Consensus 14 ~vl~l~gT~IGAGvL-~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~ 92 (415)
T COG0814 14 GVLILAGTAIGAGVL-FLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGL 92 (415)
T ss_pred HHHHHHccccccchh-hhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHH
Confidence 557788888887644 344444445553332 1222233444556667776655544 499999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhccccccccC---CCchhhhhhhhhhhhhh
Q psy14002 125 PALCGDVFWIASVLSSLGSVVDTLCLSFPFA---ISNAQPYLKEPNMTIFS 172 (454)
Q Consensus 125 ~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g---i~~~~~i~i~~~v~~~Y 172 (454)
...+...+...+=..+.|..++... +..++ .+.....++...+....
T Consensus 93 s~~~~~~~~~~aY~~~~g~~l~~~~-~~~~~~~~~~r~~~~lif~~~~~~l 142 (415)
T COG0814 93 SYFFALYGLLVAYIVGIGNLLASFL-GNQFGLNPLPRKLGSLIFALVLAFL 142 (415)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHH-HhhcccCCcchHHHHHHHHHHHHHH
Confidence 7777777777777788888873322 22222 45566655555555544
No 64
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.017 Score=59.84 Aligned_cols=129 Identities=12% Similarity=-0.041 Sum_probs=78.5
Q ss_pred HHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHH
Q psy14002 49 VLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALC 128 (454)
Q Consensus 49 ~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~ 128 (454)
+.++..+.+..+.+.+.- +.+.+.+... .+|..++.++.+ +++-.=.|.|.. .-..=|..||.+...+-+++..+
T Consensus 31 ga~~~ias~~~G~ll~~~-L~~~~si~ai--llG~llG~i~~A-~~s~~Ga~~Glp-qmi~sR~~fG~~Gs~l~sll~~~ 105 (442)
T COG1457 31 GANFTIASMVTGGLLVPG-LSFGQSLLAI--LLGNLLGGIFMA-YFSYQGARTGLP-QMILSRYPFGVKGSILPSLLNGI 105 (442)
T ss_pred HhHhHHHHHHHhcccccc-ccHHHHHHHH--HHHHHHHHHHHH-HHHHhccccCCC-hheeecccccchhHHHHHHHHHH
Confidence 334444444444444333 5555444333 244444444433 222222333322 22333455677777888888889
Q ss_pred HHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 129 GDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 129 ~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
..++|.+.|....|... ....++|++..+++.++++++- + +=|.|..-.-+.+-
T Consensus 106 ~~iGW~~v~~~l~~~a~-----~~~~~~~~~~~ili~g~l~~l~--~-ifG~r~l~~l~~~a 159 (442)
T COG1457 106 TLIGWFGVNVILSGIAI-----GSGTGLPVWAGILIIGVLMTLV--T-IFGYRALHKLERIA 159 (442)
T ss_pred HHhhHHHHHHHHhcccc-----ccCCCCcHHHHHHHHHHHHHHH--H-HHhHHHHHHHHHHH
Confidence 99999999999888754 4449999999999988888774 3 44788887777776
No 65
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.68 E-value=0.015 Score=59.93 Aligned_cols=150 Identities=14% Similarity=0.051 Sum_probs=102.6
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhH-HHHHHHHHHHHHH--HHHHHhhhhhccCcc-----CchHHHH
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVW-CQVPLGYSLALVV--GALLFVKPMREASYV-----TMLDPFQ 111 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~-~~~~~~~~l~~~~--~~~~~~~~~r~~~~~-----T~~d~l~ 111 (454)
++++.++...++-.|+.+|.+.+.|.+......|-.+ +|..+...+|+.. .=..++-++|+.+-. -+.-|++
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~ 95 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIE 95 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHH
Confidence 4588999999999999999999999999999988865 4544555555533 122466677764322 2667888
Q ss_pred HhhcCcc-hhHHHHHHHHHHHH-HHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHH
Q psy14002 112 QAYGNRI-GGLLFLPALCGDVF-WIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWI 189 (454)
Q Consensus 112 ~Ryg~~~-~~~~~~~~~~~~~~-~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~i 189 (454)
+..|+|. ..+.+++.++.... .-..|.......+ +.-+++|.+...++..+++ .. +.+||.|.+. ++.
T Consensus 96 ~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~-----~~~f~i~~~~~gi~l~~l~-~~--vi~GGikrI~--~v~ 165 (416)
T PF01235_consen 96 KGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADAL-----SSAFGIPPWITGIILAILV-AL--VIFGGIKRIA--KVS 165 (416)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----HhhccccHHHHHHHHHHHH-HH--HHHcchhHHH--HHH
Confidence 8888876 34444442222222 2467888888888 8889999877655555444 45 9999999877 555
Q ss_pred HHHHHHHHHH
Q psy14002 190 EGMLLLAFGG 199 (454)
Q Consensus 190 Q~~~~il~~~ 199 (454)
+-++.+|.+.
T Consensus 166 ~~lVP~Ma~~ 175 (416)
T PF01235_consen 166 EKLVPFMAIL 175 (416)
T ss_pred HHHHHHHHHH
Confidence 5445666554
No 66
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.63 E-value=0.033 Score=59.35 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=50.8
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHH--H-HHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWC--Q-VPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYG 115 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~--~-~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg 115 (454)
.|+++.+......+++.+|++.+.......-..|-.+. + +.++ ++.....++-+++.-.+. +.-...+|.++.||
T Consensus 41 ~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~-~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g 119 (501)
T TIGR00911 41 KKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVC-GIFSIVGALVYAELGTTIPKSGGEYNYILEVFG 119 (501)
T ss_pred CccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhC
Confidence 68889988888777778877655544443333453222 1 1122 233333445566555443 22367889999999
Q ss_pred CcchhHHHHHH
Q psy14002 116 NRIGGLLFLPA 126 (454)
Q Consensus 116 ~~~~~~~~~~~ 126 (454)
+....+.....
T Consensus 120 ~~~gf~~gw~~ 130 (501)
T TIGR00911 120 PLLAFLRLWIE 130 (501)
T ss_pred CHHHHHHHHHH
Confidence 98766655543
No 67
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.33 E-value=0.27 Score=51.10 Aligned_cols=148 Identities=14% Similarity=0.003 Sum_probs=95.8
Q ss_pred cccChHHHHHHHHHHhhccccccccchHHHhcchhH-HHHHHHHHHHHHH--HHHHHhhhhhccCccC-----chHHHHH
Q psy14002 41 RNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVW-CQVPLGYSLALVV--GALLFVKPMREASYVT-----MLDPFQQ 112 (454)
Q Consensus 41 rsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~-~~~~~~~~l~~~~--~~~~~~~~~r~~~~~T-----~~d~l~~ 112 (454)
++++++...++..++.+|.+.+.|.+......|-++ +|..+...++... .-..++-++||.+..+ +..++++
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~ 124 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKK 124 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHH
Confidence 469999999999999999999999998877777654 3444444444432 2345677777543333 3467788
Q ss_pred hhcCcc-hhHHHHHHHHHHHH-HHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 113 AYGNRI-GGLLFLPALCGDVF-WIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 113 Ryg~~~-~~~~~~~~~~~~~~-~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
..++|. ..+.+++ ++..+. ....|....+..+ +..+++|.+...++ ..+...| ...||.|.++..-..-
T Consensus 125 gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~-----~~~~~~~~~v~~i~-l~~l~~~--vi~GGik~Ia~v~~~l 195 (425)
T TIGR00835 125 GLGMRWLAVLFAVF-LIASFGIGNMVQANAIASAL-----SNAFNVPKLVTGIV-LTVLTAL--IIFGGLKRIAKISSVV 195 (425)
T ss_pred HhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHH-----HHHcCCcHHHHHHH-HHHHHHH--HHhcCchHHHHHHHHH
Confidence 877654 3344443 222222 2467777877777 65568887665444 4555667 8999999988544443
Q ss_pred HHHHHHHHH
Q psy14002 191 GMLLLAFGG 199 (454)
Q Consensus 191 ~~~~il~~~ 199 (454)
+.+|.+.
T Consensus 196 --vP~m~~~ 202 (425)
T TIGR00835 196 --VPFMALL 202 (425)
T ss_pred --HHHHHHH
Confidence 4554444
No 68
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.29 E-value=0.037 Score=58.51 Aligned_cols=292 Identities=14% Similarity=0.097 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhhhhhccCccC-chHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH----HhhhHhhhccccccccCCCch
Q psy14002 85 LALVVGALLFVKPMREASYVT-MLDPFQQAYGNRIGGLLFLPALCGDVFWIASVL----SSLGSVVDTLCLSFPFAISNA 159 (454)
Q Consensus 85 l~~~~~~~~~~~~~r~~~~~T-~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql----~~~g~i~~~~~~~~~~gi~~~ 159 (454)
+..+..+++..+|-|+.+..+ ....+++|-++..+.+.-.+.+++.+.-++.-+ .-++.-+ +.++|++..
T Consensus 141 ~~~l~~ay~~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl-----~~~~Gi~~~ 215 (485)
T PF02028_consen 141 LVGLAIAYFFYNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGL-----SSLFGIPNT 215 (485)
T ss_dssp HHHHHHHHHHHTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCTSSST
T ss_pred HHHHHHheeeeecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHcCCCCc
Confidence 334444555554333333332 345566665555566666666555544222111 1112223 666787654
Q ss_pred h--hhhhhhhhhhhhhchhcchh-hHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhe-ec-cCCCcchhHhhhhhcCccCC
Q psy14002 160 Q--PYLKEPNMTIFSKIDWLGTV-ETKDYGLWIEGMLLLAFGGIPWQC-LSFPFAI-SN-AQPYLKEPNMTIFSKVDWLG 233 (454)
Q Consensus 160 ~--~i~i~~~v~~~Y~~t~~GGl-~av~~TD~iQ~~~~il~~~~~ii~-~~~~~~~-~~-~~gg~~~l~~~~~~~~~~~~ 233 (454)
. -+.+..+++++|.++..-|+ |++-+-.-++. .+ .+++++.. +..|... .+ ...+.++..++..+..-+.+
T Consensus 216 ~~~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~--~l-~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~ 292 (485)
T PF02028_consen 216 FGLQIIIIIVITVIFTISAVSGLDKGIKRLSNINV--YL-AFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTD 292 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHH--HH-HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3 34444555555544777776 66776666662 12 22211110 0012111 01 01122222233322111111
Q ss_pred CCCCCc-hh-hHHHHHHHHHHhhhcc-hhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Q psy14002 234 TVETKD-YG-LWIEGMLLLAFGGIPW-QSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYG 310 (454)
Q Consensus 234 ~~~~~~-~~-~~~~~~~~~~~~~~~~-p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~ 310 (454)
..+..+ +. .|--....+.++.... -.+.-|+-.-|+.||---+.++.+.+...+.+ ...|=.+....-+......
T Consensus 293 ~~~~~~~w~~~WTvFYwaWWiawaPfvG~FiArISkGRTIRE~il~~~~~psl~~~~wf--~ifGg~al~~~~~g~~~~~ 370 (485)
T PF02028_consen 293 PFGNSGQWPQDWTVFYWAWWIAWAPFVGLFIARISKGRTIREFILGVLLVPSLFCFLWF--SIFGGYALYLQLSGAGDLA 370 (485)
T ss_dssp TTTTTTHHHHHTHHHHHHHHHHTHHHHHHHHHHCTTTSBHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCTSS-HH
T ss_pred cccCcccccCCCHHHHHHHHHHHHHHHHHHHhhhcCCcCHHHHHHHHHHhhHHHHHHHH--HHHCchHHhhHhhhhhhHH
Confidence 122222 21 2211112222322211 24668888888888877666655544332221 2234444332111000000
Q ss_pred CccCccCccchHHHHHHHhCc--hHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC-ee-hhHHHHH
Q psy14002 311 KNFTAAESNSVLPLVLKELTP--NWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN-WV-AFFGLGA 386 (454)
Q Consensus 311 ~~~~~~~~~~~~p~l~~~~lp--~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~-Ri-~~~~i~i 386 (454)
+ ....+++.++..+.. .+| ..+..+++..++.-...|+||...+.++.-+++ ++|++.. |+ .-+++++
T Consensus 371 ~-~~~~g~~~a~~~~l~-~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~------~~ep~~~~ri~W~~~~~~ 442 (485)
T PF02028_consen 371 A-ANEQGPEAALFAFLE-QLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKG------DEEPPRWLRIFWGLIIGA 442 (485)
T ss_dssp H-HHHH-HHHHHHHHHH-TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT------TSSS-HHHHHHHHHHHHH
T ss_pred H-HhhcchhhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC------CCCCchHHHHHHHHHHHH
Confidence 0 123345556665554 455 455566666677778899999999999998887 2222222 55 3555666
Q ss_pred HHHHHHhc
Q psy14002 387 VTAAVMSS 394 (454)
Q Consensus 387 ~a~~la~~ 394 (454)
+++.+-..
T Consensus 443 ~a~~ll~~ 450 (485)
T PF02028_consen 443 LAIVLLLI 450 (485)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655554
No 69
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.27 E-value=0.14 Score=52.37 Aligned_cols=319 Identities=14% Similarity=0.062 Sum_probs=164.3
Q ss_pred ChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHH---HHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchh
Q psy14002 44 GLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYS---LALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGG 120 (454)
Q Consensus 44 ~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~---l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~ 120 (454)
..+.+++.++|=.+||+-.+=.|..++..|-...+..+|+. ++.++.+..-.-+..+ ++.. +.+|=|+....
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~-~~~~----l~~~i~~~fg~ 80 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGG-GVES----LATRIGPWFGV 80 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCC-CHHH----HhhhccchHHH
Confidence 45678899999999999999999999999987766555544 4555555433333322 4333 34444554433
Q ss_pred HHHHHHHHHHHHH-----HHHHHHhhhHhhhccccccccCCCchhhhhhhhh--hhhhhhchhcchhhHHHHHHHHHHH-
Q psy14002 121 LLFLPALCGDVFW-----IASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPN--MTIFSKIDWLGTVETKDYGLWIEGM- 192 (454)
Q Consensus 121 ~~~~~~~~~~~~~-----~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~--v~~~Y~~t~~GGl~av~~TD~iQ~~- 192 (454)
+......+..-++ .++.=+..+ + ....+-+......+..+ ..+.| .=-++-.-..|.+--+
T Consensus 81 ~f~~~iyLsIGPffAiPRt~~vsfe~~--i-----~p~~~~~~~~~l~ifs~ifF~ia~----~~sl~psklid~vGk~L 149 (431)
T COG1114 81 LFAIAIYLSIGPFFAIPRTGAVSFEVG--I-----SPLLGDSSLPSLFIFSVIFFAIAY----LFSLNPSKLIDRVGKFL 149 (431)
T ss_pred HHHHHHHHHhcccccCCcccchhHHHh--h-----hcccCCCcchHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHH
Confidence 3332222221111 111111111 1 22222222221222211 11222 1124444455554431
Q ss_pred HHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccC-CCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCC--
Q psy14002 193 LLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWL-GTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRS-- 269 (454)
Q Consensus 193 ~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks-- 269 (454)
..++++.+.++. + ....+-.|...+..++..+ .++. +..++..-..-+ -...++.+.-...-||-.+.|.
T Consensus 150 TPilLv~l~il~--i-~~~~~p~g~~~~a~~~y~~-~pf~~GfleGY~TMDaL---Aal~FgivIv~alk~~g~~~~~~~ 222 (431)
T COG1114 150 TPILLVLLLILV--I-AAIIPPAGPISAASGAYQS-QPFSKGFLEGYLTMDAL---AALAFGIVIVNALKSKGVTTKKQI 222 (431)
T ss_pred hHHHHHHHHHHH--H-HHHhCCCCCcccccHHHHh-ChHHHHHhcchHHHHHH---HHHHHHHHHHHHHHHhccCcHHHH
Confidence 223333312211 1 1222323545544444333 2332 222221111111 1223443333333333332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhh
Q psy14002 270 TKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSS 349 (454)
Q Consensus 270 ~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST 349 (454)
.|...++-+++++....++..+..+|-......++ ..|+.+.+-+..++.+++.-..++.+.+.-|++.|
T Consensus 223 ~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~----------~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTT 292 (431)
T COG1114 223 IKYTIKAGLIAAILLALIYLSLFYLGATSASAAGL----------AANGGQILSAYSQHLFGSYGSILLGLIVFLACLTT 292 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhhccc----------ccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 13445556666666667777777777444433322 34567788889999998866666677778899999
Q ss_pred hhhHHHhhhhhhhHHHHHhhcCCCCCCCeehhHHHHHHHHHHHhcCCchHHHH
Q psy14002 350 ADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSS 402 (454)
Q Consensus 350 ~ds~l~a~ss~l~~Di~~~~~~~~~s~~Ri~~~~i~i~a~~la~~~~~~i~~l 402 (454)
+-+.+.++|.-+++-+ |+.|- |....+..+++..+|-.+.+.++.+
T Consensus 293 aiGLi~a~aefF~~~~------p~~SY-~~~v~if~i~sflvan~GL~~Ii~i 338 (431)
T COG1114 293 AVGLIVACAEFFSKLV------PKLSY-KTWVIIFTLISFLVANLGLEQIIKI 338 (431)
T ss_pred HHHHHHHHHHHHHHhc------ccccH-HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999998776654433 22222 5667778899999999888777654
No 70
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.25 E-value=0.12 Score=59.11 Aligned_cols=106 Identities=13% Similarity=0.061 Sum_probs=64.5
Q ss_pred cCcccChHHHHHHH-HHHhhccccccccchHHHhcchhHHH--HHHHHHHHHHHHHHHHhhhhhc--cCccCchHHHHHh
Q psy14002 39 AGRNVGLFVGVLTL-TATWVGGGYINATAEALFTTGLVWCQ--VPLGYSLALVVGALLFVKPMRE--ASYVTMLDPFQQA 113 (454)
Q Consensus 39 agrsl~~~~~~~s~-~at~~sa~~~~G~~~~~y~~G~~~~~--~~~~~~l~~~~~~~~~~~~~r~--~~~~T~~d~l~~R 113 (454)
.+|++|++...+.- +.+.+|...|+-.+...-+.|....+ +.+++ +...+.++=++..--+ -+.--...++++.
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~-~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCC-CVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 46788988887777 77888888888777777677754322 22322 2222333334444332 1333456678888
Q ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHhhhHhh
Q psy14002 114 YGNRIGGLLFLPALCGDVFWIASVLSSLGSVV 145 (454)
Q Consensus 114 yg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~ 145 (454)
+|+......++...+....-.+....+.+..+
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl 184 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETV 184 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987766666665555555555555555554
No 71
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.21 E-value=0.34 Score=51.26 Aligned_cols=101 Identities=11% Similarity=-0.081 Sum_probs=54.3
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhc-chhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTT-GLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNR 117 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~-G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~ 117 (454)
.|+++.+-...--++..-.........+.+... |-...|..+...++....+.-+++.-.+. +.-...++.++.+|+.
T Consensus 12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~ 91 (475)
T TIGR03428 12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEV 91 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCcc
Confidence 477777766443333321122333344455443 44333333333445555566666665554 3446788999999988
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSS 140 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~ 140 (454)
...+......+......+....+
T Consensus 92 ~gf~~gW~~~~~~~~~~~~~~~~ 114 (475)
T TIGR03428 92 IGWFAGWFMIIAQIVTAAAAAIA 114 (475)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766665544433333333
No 72
>PTZ00206 amino acid transporter; Provisional
Probab=97.06 E-value=0.28 Score=51.82 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhccccccccchHHHhcchh-HHHH-HHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHH
Q psy14002 46 FVGVLTLTATWVGGGYINATAEALFTTGLV-WCQV-PLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLF 123 (454)
Q Consensus 46 ~~~~~s~~at~~sa~~~~G~~~~~y~~G~~-~~~~-~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~ 123 (454)
...++.+..+.+|+ ..++.|....+.|+. +... .+...+. ......+.+-.++.+..|..|.-++-||++.+.+..
T Consensus 63 ~~s~fnL~~~~iGa-GILsLP~Af~~~G~v~giillil~a~ls-~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~v~ 140 (467)
T PTZ00206 63 AASAFNIASSTVGA-GIVGLPSAANSSGLVMAMIYLIIITAMT-IFSIYALGVAADKTNIRTYEGVARVLLGPWGSYYVA 140 (467)
T ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHHHHH
Confidence 44566666666665 456677766667765 3222 2222222 223445555556677889999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHhhhHhh
Q psy14002 124 LPALCGDVFWIASVLSSLGSVV 145 (454)
Q Consensus 124 ~~~~~~~~~~~~~ql~~~g~i~ 145 (454)
+...+..++...+-+.-.|..+
T Consensus 141 ~~~~~~~~G~cv~YlIiigd~l 162 (467)
T PTZ00206 141 ATRAFHGFSACVAYVISVGDIL 162 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666665555555556544
No 73
>PRK09950 putative transporter; Provisional
Probab=97.05 E-value=0.036 Score=58.69 Aligned_cols=270 Identities=11% Similarity=-0.004 Sum_probs=127.8
Q ss_pred hhccCccCchHHHHHhhcCc----chhHHHHHHHHHHHHHHHHHH----HhhhHhhhccccccccCCCchh--hhhhhhh
Q psy14002 98 MREASYVTMLDPFQQAYGNR----IGGLLFLPALCGDVFWIASVL----SSLGSVVDTLCLSFPFAISNAQ--PYLKEPN 167 (454)
Q Consensus 98 ~r~~~~~T~~d~l~~Ryg~~----~~~~~~~~~~~~~~~~~~~ql----~~~g~i~~~~~~~~~~gi~~~~--~i~i~~~ 167 (454)
+||.+-.++.+.++--.|++ .+++..++.+++.+.-++.-+ .-++.-+ +.++|++... -+.+..+
T Consensus 161 ~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl-----~~l~Gi~~~~~~~~~ii~v 235 (506)
T PRK09950 161 VRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGL-----SALTGLPNNFTVQAFVILL 235 (506)
T ss_pred hhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHcCCCCchHHHHHHHHH
Confidence 35555566666666666544 345565666655544222111 1111222 5667776543 3444455
Q ss_pred hhhhhhchhcchh-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCC-----------cchhHhhhhhcCccCCCC
Q psy14002 168 MTIFSKIDWLGTV-ETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPY-----------LKEPNMTIFSKVDWLGTV 235 (454)
Q Consensus 168 v~~~Y~~t~~GGl-~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg-----------~~~l~~~~~~~~~~~~~~ 235 (454)
++++|.++..-|+ |++-+-.-++ +. +.++ +. +.+... |. ++...++..+..-+.+..
T Consensus 236 i~~if~~S~~~Gl~kGIk~LS~~N--~~-la~~-ll----~~vli~---GPT~fil~~~~~siG~yl~~f~~ms~~t~~~ 304 (506)
T PRK09950 236 SGVIFCLSSYIGIDNGLQRLSKMV--GW-GAFL-FA----LLVLIV---GPTEFITNNIINSIGLTTQNFLQMSLFTDPM 304 (506)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH--HH-HHHH-HH----hheeec---cCHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 5555555888888 8888877777 22 2222 11 111111 22 112222222211111111
Q ss_pred CCCch-hhH----HHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Q psy14002 236 ETKDY-GLW----IEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYG 310 (454)
Q Consensus 236 ~~~~~-~~~----~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~ 310 (454)
+.+++ ..| .++++.++- .-..+.-|+-.-|+.||.-.+.++.+-+...+. ....|=.+..+.-+......
T Consensus 305 ~~~~w~~~WTiFYWaWWiawaP---fvG~FiARISrGRTIRe~ilg~l~~psl~~~~w--f~ifGg~ai~l~~~g~~~~~ 379 (506)
T PRK09950 305 GDGSFTRNWTVFYWLWWISYTP---GVAMFVTRVSRGRKIKEVIWGLILGSSVGCWFF--FGVLESYAIHQFINGVINVP 379 (506)
T ss_pred CccCccccChHHHHHHHHHHHH---HHHHHhhhhcCCcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHccchhHH
Confidence 11121 112 122222221 113567899889998887777666654432222 12234334332101000000
Q ss_pred CccCccCccchHHHHHHHhCc--hHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC---ee-hhHHH
Q psy14002 311 KNFTAAESNSVLPLVLKELTP--NWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN---WV-AFFGL 384 (454)
Q Consensus 311 ~~~~~~~~~~~~p~l~~~~lp--~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~---Ri-~~~~i 384 (454)
......+++.++..+.. .+| ..+..+.+..++.-...|+||...++++.-++.. +++.+++ |+ .-+.+
T Consensus 380 ~~~~~~~~~~a~~~~l~-~lP~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~-----~~~~~P~~~~ri~W~i~~ 453 (506)
T PRK09950 380 QILNTLGGETAVQQLLS-SLPAGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNL-----REGDDPDRGLRLFWCVVI 453 (506)
T ss_pred HHHHccCcchHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCC-----CCCCCCCcchhHHHHHHH
Confidence 00112234556665554 455 4555566666667788899999999998876532 1122222 54 34556
Q ss_pred HHHHHHHHhc
Q psy14002 385 GAVTAAVMSS 394 (454)
Q Consensus 385 ~i~a~~la~~ 394 (454)
++++..+-+.
T Consensus 454 g~ia~~Ll~~ 463 (506)
T PRK09950 454 TLIPLSILFT 463 (506)
T ss_pred HHHHHHHHHh
Confidence 6666554443
No 74
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.01 E-value=0.38 Score=50.88 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=24.8
Q ss_pred hHHHHHHHhC-chHHHHHHHHHHHHHHHhhhhhHHHhhhhhh---hHHHH
Q psy14002 321 VLPLVLKELT-PNWVAFFGLGAVTAAVMSSADAGILSSSSMF---TRNIY 366 (454)
Q Consensus 321 ~~p~l~~~~l-p~~l~gl~~~~~laA~mST~ds~l~a~ss~l---~~Di~ 366 (454)
.+.....+.+ +++...++...++.+..++..+.+.+.|-.+ +||=.
T Consensus 290 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~ 339 (482)
T TIGR00907 290 PIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGG 339 (482)
T ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3434444433 3355545555555666777777777666543 46633
No 75
>PRK09928 choline transport protein BetT; Provisional
Probab=96.90 E-value=0.16 Score=55.35 Aligned_cols=126 Identities=15% Similarity=0.117 Sum_probs=67.7
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCc--hHHHH
Q psy14002 259 SYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTP--NWVAF 336 (454)
Q Consensus 259 ~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp--~~l~g 336 (454)
.+.-|+---|+.||--.+.++.+.+...+.+ .+.|=.+..+.-+....... ....+++.++..+..+ +| ..+..
T Consensus 338 lFIARISRGRTIREfilgvllvPsl~~~~Wf--sIfGgsal~l~~~g~~~l~~-~~~~~~~~alf~~l~~-lP~~~i~~~ 413 (679)
T PRK09928 338 LFLARISRGRTIRQFVLGTLIIPFTFTLLWL--SIFGNSALYEIIHGNAAFAE-EAMAHPERGFYSLLAQ-YPAFTFSAS 413 (679)
T ss_pred HHHhhhcCCccHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHcCCccHHH-HhhcchhhHHHHHHHh-CcHHHHHHH
Confidence 4668888888888877666665544333221 22343333221110000000 0113556677766654 45 44445
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCC-CCC--ee-hhHHHHHHHHHHHh
Q psy14002 337 FGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKL-TPN--WV-AFFGLGAVTAAVMS 393 (454)
Q Consensus 337 l~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~-s~~--Ri-~~~~i~i~a~~la~ 393 (454)
+.+..++.-...|+||....+++.-++.. +++. +++ |+ .-++++++++.+-.
T Consensus 414 l~~il~~iFfvTSaDS~s~Vla~lts~g~-----~~~~~pp~~~RifW~v~ig~la~~LL~ 469 (679)
T PRK09928 414 VATITGLLFYVTSADSGALVLGNFTSKLK-----DINSDAPNWLRVFWSVAIGLLTLGMLM 469 (679)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHcCCC-----CCCCCCCcceeeHHHHHHHHHHHHHHH
Confidence 55555666678899999999988877642 1111 222 65 35556666655444
No 76
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=96.78 E-value=0.084 Score=55.22 Aligned_cols=129 Identities=15% Similarity=0.088 Sum_probs=67.8
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCc--hHHHH
Q psy14002 259 SYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTP--NWVAF 336 (454)
Q Consensus 259 ~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp--~~l~g 336 (454)
.+.-|+-.-|+.||.-.+.++.+-+...+.+ ...|-.+..+.-+.-........+++.+.++..+.. .+| ..+..
T Consensus 284 ~FiARISrGRTIRe~ilg~~~~psl~~~~wf--~ifGg~ai~~~~~g~~~~~~~~~~~~~~~a~~~~l~-~lP~~~i~~~ 360 (453)
T TIGR00842 284 MFIARISRGRTIREFIFGVLLGPTAFTYLWF--SVFGNSALYLQQNGGFINAPFVVETNGARALFGLLQ-ALPLGTITSA 360 (453)
T ss_pred hheeeecCCcCHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHhcchhhhHHHhcccchhHHHHHHH-HCcHHHHHHH
Confidence 4668888888888877766666544322221 223444433211100000000011223456665554 455 34555
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCC--CCCC-ee-hhHHHHHHHHHHHhcC
Q psy14002 337 FGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK--LTPN-WV-AFFGLGAVTAAVMSSA 395 (454)
Q Consensus 337 l~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~--~s~~-Ri-~~~~i~i~a~~la~~~ 395 (454)
+.+..++.-...|+||...+.++..+++. +++ .+.+ |+ .-+.++.++..+-...
T Consensus 361 l~~il~~if~vTs~DS~s~vla~~~s~~g-----~~~~ep~~~~ri~W~v~ig~~a~~ll~~g 418 (453)
T TIGR00842 361 LALIVIIIFFITSADSGALVLANTSSRGG-----QLGEEPPKWVRVFWAVAIGLIALVLLFSG 418 (453)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcCC-----CCCCCCCcccchHHHHHHHHHHHHHHHhc
Confidence 56666666788899999999988877552 222 2222 55 3455666666555443
No 77
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=96.76 E-value=0.29 Score=51.77 Aligned_cols=338 Identities=10% Similarity=-0.027 Sum_probs=168.4
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHH---HHHHhhhhhccCccCchHHHHHhhcC
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVG---ALLFVKPMREASYVTMLDPFQQAYGN 116 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~---~~~~~~~~r~~~~~T~~d~l~~Ryg~ 116 (454)
.|++..-.+.+--++..+|.+-|+|....-.+.|-.+.. ++|.+.-... ..=++..---.....--.-...||=+
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~l--i~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLL--IAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 488999999998899999999999999999999987764 3333322111 11122221112211112334566666
Q ss_pred cc-hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC--CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHH-
Q psy14002 117 RI-GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA--ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGM- 192 (454)
Q Consensus 117 ~~-~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g--i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~- 192 (454)
+. ....+....+.-..-++.|+.+.+.++ +..++ +|.+.-+.+..+++.+. -+ =|.|+-.-++..-++
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi-----~yW~p~~v~~~~w~~iF~~~i~~i--N~-~~Vk~fGE~Efw~s~i 192 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVI-----QYWFPDTVPPWIWIAIFLVLIFLL--NL-FGVKGFGETEFWFSSI 192 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhh-----hhhcCCCCChHHHHHHHHHHHHHH--HH-hcccccceehHHHHHH
Confidence 65 555566666666667899999999999 88763 34444444444444332 22 244544444443332
Q ss_pred -HHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCC--CCchhhHHHHHHHHHHhhhcchhHHHHHhccCC
Q psy14002 193 -LLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVE--TKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRS 269 (454)
Q Consensus 193 -~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks 269 (454)
+ +.+++ .++ +.++.. .||.++ +..... .+..++. +.+...+.+.++..+++.-..-..-.-.-.+||
T Consensus 193 KV-~~ii~-Fii---~gii~~--~Gg~~~-~~~ig~--~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~n 262 (541)
T COG0833 193 KV-LTIIG-FII---LGIIII--CGGGPT-HGYIGF--NYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESEN 262 (541)
T ss_pred HH-HHHHH-HHH---HHHHHh--cCCCCC-CCCcce--eeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCC
Confidence 2 22232 221 112221 244444 222221 1111111 123333333333333333222233344445666
Q ss_pred HH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHH
Q psy14002 270 TK-AAYHLSTLSALLCFSMA-IPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVM 347 (454)
Q Consensus 270 ~~-~ar~~~~~~~~~~~~~~-~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~m 347 (454)
|+ +..|+.-=-..-..+++ +...++|+.--.-.|++.. . ........-+-...++..=+.+..++=+.++.+++
T Consensus 263 P~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~---~-~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svl 338 (541)
T COG0833 263 PRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLG---N-SSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVL 338 (541)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCccccc---C-CcCCccCCChhHhHHhcCCccchHHHHHHHHHHHH
Confidence 33 23332221111122222 2233345444333343210 0 00001122333345555556888899999999999
Q ss_pred hhhhhHHHhhhhhhh---HHHHHhhcCCCCCCC-------eehhHHHHHHHHHHHhcCCchHHHH
Q psy14002 348 SSADAGILSSSSMFT---RNIYKLSFRPKLTPN-------WVAFFGLGAVTAAVMSSADAGILSS 402 (454)
Q Consensus 348 ST~ds~l~a~ss~l~---~Di~~~~~~~~~s~~-------Ri~~~~i~i~a~~la~~~~~~i~~l 402 (454)
|.++|.+.+.|-++- +|=+.|-+- +..+| =..+.++++++.+-+....+.+++.
T Consensus 339 Sa~NS~lYasSR~L~sLA~~g~APk~f-~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~w 402 (541)
T COG0833 339 SAANSGLYASSRMLYSLAKQGKAPKIF-AKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNW 402 (541)
T ss_pred HHhhccchHHHHHHHHHHhcCCCchHH-HhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999999887652 222222110 11233 2255667888877777744335543
No 78
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=96.68 E-value=1 Score=46.72 Aligned_cols=151 Identities=15% Similarity=0.003 Sum_probs=104.0
Q ss_pred ecCcccChHHHHHHHHHHhhccccccccchHHHhcchhH-HHHHHHHHHHHHH--HHHHHhhhhhccCc----c-CchHH
Q psy14002 38 LAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVW-CQVPLGYSLALVV--GALLFVKPMREASY----V-TMLDP 109 (454)
Q Consensus 38 ~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~-~~~~~~~~l~~~~--~~~~~~~~~r~~~~----~-T~~d~ 109 (454)
-.++.+.++...++-.|+.+|.+.+-|.+-.....|-.+ +|..+...+|..- .=-.++.++|+.+. + -+.-|
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 556788999999999999999999999999999888765 3443444444422 23357778876432 2 24668
Q ss_pred HHHhhcCcc-hhHHHHHHHHHHHH--HHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHH
Q psy14002 110 FQQAYGNRI-GGLLFLPALCGDVF--WIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYG 186 (454)
Q Consensus 110 l~~Ryg~~~-~~~~~~~~~~~~~~--~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~T 186 (454)
+++..|.+. ..+.+ +.++..+. .-..|-...+..+ +.-+++|++..-++. .+.+.+ ..+||.|.+...
T Consensus 138 i~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~-----~~af~~~~~~~gi~l-a~l~~~--VI~GGi~rIa~v 208 (452)
T COG1115 138 IEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASAL-----ANAFGIPPLVTGIVL-ALLVAL--VIFGGIKRIAKV 208 (452)
T ss_pred HHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHH-----HHhcCCcHHHHHHHH-HHHHHH--HHHcchHHHHHH
Confidence 899999776 44555 33333333 5678999999998 899999976655544 444555 899999998854
Q ss_pred HHHHHHHHHHHHH
Q psy14002 187 LWIEGMLLLAFGG 199 (454)
Q Consensus 187 D~iQ~~~~il~~~ 199 (454)
--.- +..|-+.
T Consensus 209 ~~~v--VPfMA~~ 219 (452)
T COG1115 209 SSKV--VPFMAIL 219 (452)
T ss_pred HHHH--HHHHHHH
Confidence 4333 4555544
No 79
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=96.67 E-value=0.12 Score=54.68 Aligned_cols=130 Identities=8% Similarity=-0.048 Sum_probs=66.7
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCc--hHHHH
Q psy14002 259 SYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTP--NWVAF 336 (454)
Q Consensus 259 ~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp--~~l~g 336 (454)
.+.-|+-.-|+.||.-.+.++.+-+...+.+ ...|=.+..+.-+.....++..+..+++.++..+. +.+| ..+..
T Consensus 333 ~FiARISrGRTIRE~ilg~l~~psl~~~~wf--~ifGg~al~~~~~g~~~~~~~~~~~~~~~alf~~l-~~lPl~~i~~~ 409 (504)
T PRK03356 333 IFLARISRGRTVRELCFGMVLGLTASTWILW--TVLGSNTLLLMDKNIINIPNLIEQYGVARAIIETW-AALPLSTATMW 409 (504)
T ss_pred HHHHHHcCCCcHHHHhhhhhHHHHHHHHHHH--HHHhHHHHHHHHcCchhHHHHHhccChhhHHHHHH-HHCcHHHHHHH
Confidence 4678999999998877776665544322221 22343333221110000000011224456666555 4556 33344
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC-ee-hhHHHHHHHHHHHhc
Q psy14002 337 FGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN-WV-AFFGLGAVTAAVMSS 394 (454)
Q Consensus 337 l~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~-Ri-~~~~i~i~a~~la~~ 394 (454)
+.+..++.-...|+||...++++.-++..-. ++|.+.+ |+ .-+.++.+++.+-..
T Consensus 410 l~~il~~if~vTsaDS~t~vla~~ts~g~~~---~~~p~~~~ri~W~v~ig~ia~~Ll~~ 466 (504)
T PRK03356 410 GFFILCFIATVTLINACSYTLAMSTCREVRD---GEEPPLLVRIGWSILVGIIGIVLLAL 466 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHcCCCCC---CCCCCcchhhHHHHHHHHHHHHHHHh
Confidence 4444445556889999999999887754211 1122221 54 355566666655443
No 80
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.61 E-value=1.1 Score=46.60 Aligned_cols=292 Identities=15% Similarity=0.081 Sum_probs=129.1
Q ss_pred CcccChHH-HHHHHHHHhhccccccccchHHHhc-chhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcC
Q psy14002 40 GRNVGLFV-GVLTLTATWVGGGYINATAEALFTT-GLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGN 116 (454)
Q Consensus 40 grsl~~~~-~~~s~~at~~sa~~~~G~~~~~y~~-G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~ 116 (454)
.|+++.+. ......++..+.+.+...+..+... +....| .++ .+...+.++.+++.-++. +.--..+|.++-+|+
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~-li~-~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~ 88 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAW-LIA-GIIILFLALSYAELSSAIPSAGGAYAYAKRALGP 88 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHH-HHH-HHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCc
Confidence 36777777 5555555555543444333333332 111122 222 222222344455544432 333688999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCC------chhhhhhhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 117 RIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAIS------NAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~------~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
+.....+....+.............+..+ +..++.. .+....+..++..+..+.-.-|.|...+.+.+-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~ 163 (466)
T COG0531 89 RLGFLAGWLYLLAYVIALAAIAIGAASYL-----SYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSII 163 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 98777777777766666665555555555 4444321 112222222222221114444555555544444
Q ss_pred HHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCH
Q psy14002 191 GMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRST 270 (454)
Q Consensus 191 ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~ 270 (454)
.+ +.++..+++ ......+ .+.+. .... ....+ ................+.+.......+-.=+.||+
T Consensus 164 ~~--~~i~~~i~~---~i~~~~~--~~~~~--~~~~---~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp 230 (466)
T COG0531 164 TI--LKIIILLIF---IILGLFA--FGFSN--GNLF---APFNP-GGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNP 230 (466)
T ss_pred HH--HHHHHHHHH---HHHHHHH--hCccc--cccC---CCccc-ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCc
Confidence 21 222221111 1111122 11111 0000 00000 11111112222222233344455555666678885
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhh
Q psy14002 271 -KAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSS 349 (454)
Q Consensus 271 -~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST 349 (454)
|+..|+...+......+++... .......|+. + ....+++..+........+.+...++.+..+.+..++
T Consensus 231 ~r~ip~aii~~~~~~~~~y~~~~---~~~~~~~~~~--~----~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 301 (466)
T COG0531 231 KRTIPRAIILSLLIVLILYILGA---LVIVGVLPAG--D----LAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGS 301 (466)
T ss_pred cccccHHHHHHHHHHHHHHHHHH---HHHHhCccHH--H----HhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 6778888877644444433221 1221122210 0 0001222333333444444567777776666677777
Q ss_pred hhhHHHhhhhh
Q psy14002 350 ADAGILSSSSM 360 (454)
Q Consensus 350 ~ds~l~a~ss~ 360 (454)
..+..++.+-.
T Consensus 302 ~~~~~~~~sR~ 312 (466)
T COG0531 302 LLAWILAVSRV 312 (466)
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 81
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.60 E-value=0.13 Score=53.79 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccC-----
Q psy14002 81 LGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFA----- 155 (454)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~g----- 155 (454)
+|..++.++.+ +.+..=.|.| .+....-|.-||.+..++.+++..+..+.|.+.|..-.|..++... +..+|
T Consensus 50 ~G~~l~~i~~~-~~~~~G~r~G-l~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~-~~~~g~~~~~ 126 (440)
T PF02133_consen 50 IGNLLGAILVA-LMGIIGPRTG-LPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALL-GIIFGSFLWI 126 (440)
T ss_dssp HHHHHHHHHHH-HHTHHHHCC----HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC-----H
T ss_pred HHHHHHHHHHH-HhcccccccC-CCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCcchhh
Confidence 44444444433 3444445555 4445566777888888888888888899999999887777762211 23333
Q ss_pred --------CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 156 --------ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 156 --------i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
.+...+.++ ..+...+ +...|++.+..-..+-
T Consensus 127 ~~~~~~~~~~~~~~~~~-~~~i~~~--~~~~g~~~l~~~~~~~ 166 (440)
T PF02133_consen 127 GNAIIGIALPLWVCFFI-FWLIQTL--FAIYGMKALRRLAVIA 166 (440)
T ss_dssp H-----------HHHHH-HHHHHHH--HHCTHHHHHHHHHHCC
T ss_pred hhhhhcchhhHHHHHHH-HHHHHHH--HHhcCHHHHHhHHhhh
Confidence 111122222 2233344 6677888877666655
No 82
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=96.55 E-value=0.4 Score=50.59 Aligned_cols=249 Identities=16% Similarity=0.095 Sum_probs=118.9
Q ss_pred hhccCccCchHHHHHhhcCcc----hhHHHHHHHHHHHHH-------HHHHHHhhhHhhhccccccccCCCc--hhhhhh
Q psy14002 98 MREASYVTMLDPFQQAYGNRI----GGLLFLPALCGDVFW-------IASVLSSLGSVVDTLCLSFPFAISN--AQPYLK 164 (454)
Q Consensus 98 ~r~~~~~T~~d~l~~Ryg~~~----~~~~~~~~~~~~~~~-------~~~ql~~~g~i~~~~~~~~~~gi~~--~~~i~i 164 (454)
+||..-.++.+-++-+.|++. +....++.+++.++- .+.|+.++ + +.++|+|. ++-..+
T Consensus 164 ~rk~~pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~G---l-----~~l~gip~~~~~q~~i 235 (537)
T COG1292 164 YRKGLPLLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSLGLGALQLTAG---L-----SYLFGIPNSFAVQAII 235 (537)
T ss_pred EecCCCchhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHHHHhHHHHHHH---H-----HHHhCCCChHHHHHHH
Confidence 455555556666666666652 445555566555443 33333322 2 67788873 333444
Q ss_pred hhhhhhhhhchhcchh-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhe-ec-cCCCcchhHhhhhhcCccCCCCCCC---
Q psy14002 165 EPNMTIFSKIDWLGTV-ETKDYGLWIEGMLLLAFGGIPWQCLSFPFAI-SN-AQPYLKEPNMTIFSKVDWLGTVETK--- 238 (454)
Q Consensus 165 ~~~v~~~Y~~t~~GGl-~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~-~~-~~gg~~~l~~~~~~~~~~~~~~~~~--- 238 (454)
.++++.++.++...|+ |++-+..-++ +.+..+-++++.+.-|-.. .+ -..+.+...+++....-+....++.
T Consensus 236 I~vi~~~~~~S~~sGv~KGIr~LS~~n--~~la~~lllfvli~GPT~fll~~~~~~iG~yl~nf~~ms~~t~p~~~~~w~ 313 (537)
T COG1292 236 IAVITALFTISVWSGLDKGIRVLSNIN--MVLAFLLLLFVLIVGPTLFLLNSFVDNIGLYLQNFVQMSFFTDPYGDGGWP 313 (537)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccCcCCCCCcc
Confidence 4555555544666666 8888777777 2222211011100011111 11 0012222222332211111111111
Q ss_pred -chh-hHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC--ccC
Q psy14002 239 -DYG-LWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGK--NFT 314 (454)
Q Consensus 239 -~~~-~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~--~~~ 314 (454)
++. .+.++++.+... -..+.-|+-.-|+.||---+.++.+.+...+. +..+|-.+....-+ ...+. ...
T Consensus 314 ~~WTiFYWaWWisWsPf---VG~FIARISrGRTIREfi~gvl~~P~~~~~~w--ftVfG~~ai~~~~~--~~~~~~~~~~ 386 (537)
T COG1292 314 QGWTVFYWAWWISWSPF---VGMFIARISRGRTIREFIVGVLLIPTLFTWLW--FTVFGNYALYLIIN--GGGGILGLVT 386 (537)
T ss_pred cchHHHHHHHHHHHhHH---HHHHHHHHhCCccHHHHHHHHHHHhHHHHHHH--HHHHhhhHHHHHhc--cccchhhhhh
Confidence 111 112233333221 13577899888888887666655544332221 22345444433211 00010 012
Q ss_pred ccCccchHHHHHHHhCc--hHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHH
Q psy14002 315 AAESNSVLPLVLKELTP--NWVAFFGLGAVTAAVMSSADAGILSSSSMFTRN 364 (454)
Q Consensus 315 ~~~~~~~~p~l~~~~lp--~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~D 364 (454)
..+++.++..+..+ +| .....+.+..+..-..+++||....+++.-++|
T Consensus 387 ~~~~e~alf~~l~~-lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~ 437 (537)
T COG1292 387 TEGPETALFQVLSH-LPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRG 437 (537)
T ss_pred ccchhhHHHHHHHh-CCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccC
Confidence 23567777777654 45 334444444455567889999998888888777
No 83
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=96.47 E-value=1.5 Score=46.39 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=49.6
Q ss_pred cChHHHHHHHHHHhhccccccccchHHHhcchhHH-HHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcchh
Q psy14002 43 VGLFVGVLTLTATWVGGGYINATAEALFTTGLVWC-QVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRIGG 120 (454)
Q Consensus 43 l~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~-~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~~~ 120 (454)
++.+-+.+-.+++.+| +-+.+..+ ..|.+.. ++.++..+..+..++-+++.-++. +.-...++.++.||++...
T Consensus 3 ~~~~~l~~~~~~~v~~---~~~~~~~a-~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf 78 (474)
T TIGR03813 3 LTVVTLAIMNITAVVS---LRGLPAEA-EYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGF 78 (474)
T ss_pred ccHHHHHHHHHHHHHH---hhcchHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHH
Confidence 4444444444444333 44445554 4676554 333333323333445555554433 3346779999999999877
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14002 121 LLFLPALCGDVFWIASVL 138 (454)
Q Consensus 121 ~~~~~~~~~~~~~~~~ql 138 (454)
+......+....+...++
T Consensus 79 ~~gw~~w~~~~~~~p~~~ 96 (474)
T TIGR03813 79 LAIFMLWAQVTIWFPTVL 96 (474)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 776665555544444433
No 84
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=96.42 E-value=1.6 Score=46.63 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=44.0
Q ss_pred cccChHHHHHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhcc--CccCchHHHHHhhcCc
Q psy14002 41 RNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMREA--SYVTMLDPFQQAYGNR 117 (454)
Q Consensus 41 rsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~~--~~~T~~d~l~~Ryg~~ 117 (454)
|+++.+-+.+-.++...| .-+.|. .+++|.+... +.++..+-.+..++-+++.-... +.-...+|.++-||++
T Consensus 4 ~~l~~~~~~~~~~~~v~~---~~~~~~-~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~ 79 (507)
T TIGR00910 4 KKLSLFGFFAITASMVLA---VYEYPT-FATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGER 79 (507)
T ss_pred cEeeHHHHHHHHHHHHHH---HHhhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCcc
Confidence 556666555544444332 334453 4567876643 33332222222344555553321 2346788999999998
Q ss_pred chhHHHHHHH
Q psy14002 118 IGGLLFLPAL 127 (454)
Q Consensus 118 ~~~~~~~~~~ 127 (454)
.+.+......
T Consensus 80 ~Gf~~~~~~W 89 (507)
T TIGR00910 80 FGFAAIFFGW 89 (507)
T ss_pred HHHHHHHHHH
Confidence 8665544333
No 85
>KOG1303|consensus
Probab=96.10 E-value=1.1 Score=46.74 Aligned_cols=324 Identities=13% Similarity=0.053 Sum_probs=154.1
Q ss_pred cCcccChHHHHHHHHHHhhccccccccchHHHhcchhH-HHHHHHHHHHHHHHHHHHhhhhhcc------CccCchHHHH
Q psy14002 39 AGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVW-CQVPLGYSLALVVGALLFVKPMREA------SYVTMLDPFQ 111 (454)
Q Consensus 39 agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~-~~~~~~~~l~~~~~~~~~~~~~r~~------~~~T~~d~l~ 111 (454)
..|+-++|..++-.+... .|...++.|-.--+-|+.+ ...-+.+.+-..-.+.++.+-++++ +..+.+|.-+
T Consensus 34 ~~~~~s~~~a~~~~i~~~-~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINAL-IGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred cCCCCcceehhhheehhh-hhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence 477777777777666554 4455677775555567654 3222222322222344455554432 3366899999
Q ss_pred HhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhh----hccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHH
Q psy14002 112 QAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVV----DTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGL 187 (454)
Q Consensus 112 ~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~----~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD 187 (454)
+-||++.|.+.+....+-.+......+...|+-+ +.++++.. ..+...-+++.+.+.+.. +.+=-+...-+-.
T Consensus 113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-~l~~~~f~iif~~i~~~~--s~lp~~~~l~~~S 189 (437)
T KOG1303|consen 113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-SLDKQYFIIIFGLIVLPL--SQLPNFHSLSYLS 189 (437)
T ss_pred HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cccceehhhhHHHHHHHH--HHCCCcchhHHHH
Confidence 9999888766666555544443333333333333 11111110 233445566666666665 5544444444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHH-HHHHHHhh-hcchhHHHHHh
Q psy14002 188 WIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEG-MLLLAFGG-IPWQSYFQRVL 265 (454)
Q Consensus 188 ~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~p~~~qr~~ 265 (454)
..-++ .-...+ .+. ......+ |.+. ..++ .+ ..+.++.+. ...+. .+.++++. ...|. .|.
T Consensus 190 ~~~av-mS~~~a-~~~---~~~g~~~---g~~~---~~~~-~~-~~~~~~~~~-~f~a~g~iaFaf~gH~v~pe-Iq~-- 252 (437)
T KOG1303|consen 190 LVGAV-MSTLYA-VIL---IVLGIAD---GVGF---CAPS-GG-YLDLGTIPT-VFTALGIIAFAYGGHAVLPE-IQH-- 252 (437)
T ss_pred HHHHH-HHHHHH-HHH---HHHhhcc---cccc---CCcc-cC-cccCCCCcc-hhhhhhheeeeecCCeeeee-hHh--
Confidence 33321 000111 110 1111111 1111 0010 00 001111110 01110 11112221 12222 232
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHH
Q psy14002 266 SLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAA 345 (454)
Q Consensus 266 aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA 345 (454)
+.|++++.+|+.+++-..+..++++....|..++ .| ..+|+.++.+- -|.|+....-+.+...
T Consensus 253 tMk~p~~f~~~~lis~~~~~~~y~~vai~GY~aF---G~-----------~~~~~il~s~~---~p~~~~~~ani~i~~h 315 (437)
T KOG1303|consen 253 TMKSPPKFKKALLISYIIVTFLYFPVAIIGYWAF---GD-----------SVPDNILLSLQ---PPTWLIALANILIVLH 315 (437)
T ss_pred hcCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh---cc-----------ccchhhhhccc---CchhHHHHHHHHHHHH
Confidence 6778888999999998888888888776665554 21 23344444221 3889998876656555
Q ss_pred HHhhhhhHHHhhhhhhhHHHHHhhcCCCCC-----C--Ceehh-HHHHHHHHHHHhcCC--chHHHHHHH
Q psy14002 346 VMSSADAGILSSSSMFTRNIYKLSFRPKLT-----P--NWVAF-FGLGAVTAAVMSSAD--AGILSSSSM 405 (454)
Q Consensus 346 ~mST~ds~l~a~ss~l~~Di~~~~~~~~~s-----~--~Ri~~-~~i~i~a~~la~~~~--~~i~~l~~~ 405 (454)
...+..=..+. ..|...+..+.+.+ . +|... ..+.+....+|...| +.+.+++.-
T Consensus 316 ~i~s~~i~a~p-----l~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa 380 (437)
T KOG1303|consen 316 LIGSYQIYAQP-----LFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGA 380 (437)
T ss_pred Hhhhhhhhhcc-----hHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHH
Confidence 55553322222 23444444332222 1 15532 344556666676555 345555433
No 86
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.04 E-value=0.046 Score=57.80 Aligned_cols=294 Identities=12% Similarity=0.004 Sum_probs=141.5
Q ss_pred HHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcchhHHHHHHHHHHH
Q psy14002 54 ATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRIGGLLFLPALCGDV 131 (454)
Q Consensus 54 at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~ 131 (454)
+..++.+.+.|........|..+.. ..+-..+...+.+.-+++.-|+. +.-...++.++-.|++.....+....+..+
T Consensus 8 g~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~~ 87 (478)
T PF00324_consen 8 GGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLSYI 87 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHHHH
Confidence 3445666677776666666663332 11222223333333444444443 445677888888888877777777777777
Q ss_pred HHHHHHHHhhhHhhhccccccc---cCCC-chhh----hhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy14002 132 FWIASVLSSLGSVVDTLCLSFP---FAIS-NAQP----YLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQ 203 (454)
Q Consensus 132 ~~~~~ql~~~g~i~~~~~~~~~---~gi~-~~~~----i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii 203 (454)
...+.+..+.+..+ +.. .+.+ .+.. ..+..+++.+ ...=|.|.....+.+-.+ +.++.++..
T Consensus 88 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---l~~~gv~~~~~~~~~~~~--i~~~~li~~ 157 (478)
T PF00324_consen 88 AAIAAEATAAGSFL-----QFWGYFPGLPSTWVWGILIAIIFILLITL---LNLFGVRVSGKIEFILTI--IKLIALIAF 157 (478)
T ss_pred HHHHhhhhhhhhhh-----ccccccccccccccccchhhhhhhhhhhh---hhhhhhhccchHHHHHHH--HhhhHhhhh
Confidence 77888888888777 443 3333 2221 1122222222 333366777666665532 333331111
Q ss_pred hhhhhhheeccCCCcchhHhhhhhcCc---cCCC----CCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHH-HHHH
Q psy14002 204 CLSFPFAISNAQPYLKEPNMTIFSKVD---WLGT----VETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTK-AAYH 275 (454)
Q Consensus 204 ~~~~~~~~~~~~gg~~~l~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~-~ar~ 275 (454)
.+ ..+......++..+- +...++.. ++++ .+..+............+++.......+..-++||+| +..|
T Consensus 158 ii-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPr 235 (478)
T PF00324_consen 158 II-VGVIILFFGGGPSNG-RYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPR 235 (478)
T ss_pred hh-hcccccccccCCCcc-cccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhh
Confidence 10 111111111111111 11111011 1110 1111122222112222222333334455556677665 6777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccC-cc--chHHHHHHHhCchHHHHHHHHHHHHHHHhhhhh
Q psy14002 276 LSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAE-SN--SVLPLVLKELTPNWVAFFGLGAVTAAVMSSADA 352 (454)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~-~~--~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds 352 (454)
+...+......++...... .....|.. . ....+ .+ ..+....++...+++..++.++.+.+..|+..+
T Consensus 236 a~~~~~~~~~v~y~~~~~~---~~~~~~~~----~--~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~ 306 (478)
T PF00324_consen 236 ATLLSVLRIGVFYVLTSYA---LTLAVPYD----N--LGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANA 306 (478)
T ss_pred Hhhhhhhhhhhhhhhhhhh---cccccCcc----c--hhhccccccccchhhhhhhcccccccceecccchhhhhhhhhh
Confidence 7777655555444432221 11112221 0 00111 11 233445566677888888888888899999988
Q ss_pred HHHhhhhh---hhHHHHHh
Q psy14002 353 GILSSSSM---FTRNIYKL 368 (454)
Q Consensus 353 ~l~a~ss~---l~~Di~~~ 368 (454)
.+++.|-. +++|=..|
T Consensus 307 ~~~~~sR~l~ama~dg~lP 325 (478)
T PF00324_consen 307 SLYAASRLLYAMARDGLLP 325 (478)
T ss_pred hhcccceeehhhhhhhhhh
Confidence 88877754 45665555
No 87
>PLN03074 auxin influx permease; Provisional
Probab=96.03 E-value=1.3 Score=46.84 Aligned_cols=131 Identities=8% Similarity=-0.040 Sum_probs=64.0
Q ss_pred HHHHhhccccccccchHHHhcchh-HHHHHHHHHHHHHHHHHHHhh---hhhc-c--Cc-------cCchHHHHHhhcCc
Q psy14002 52 LTATWVGGGYINATAEALFTTGLV-WCQVPLGYSLALVVGALLFVK---PMRE-A--SY-------VTMLDPFQQAYGNR 117 (454)
Q Consensus 52 ~~at~~sa~~~~G~~~~~y~~G~~-~~~~~~~~~l~~~~~~~~~~~---~~r~-~--~~-------~T~~d~l~~Ryg~~ 117 (454)
++...+ |..+++.|....+.|+. |....+...+-..-.++.+.+ .+|+ . +. .+..|..+..+|+.
T Consensus 55 l~~~~v-G~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~ 133 (473)
T PLN03074 55 CASNQV-AQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPY 133 (473)
T ss_pred HHHHHH-hHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChh
Confidence 444444 45677788887778875 333222222211112333332 2221 1 11 13466677788988
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccc-cCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 118 IGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFP-FAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~-~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
.+........+..++....++...+..+ ..+ ..+|....+.+...+.+.- +..=-++...+...+-
T Consensus 134 ~~~~~~~~~~v~l~~~~v~~li~~~~~~-----~~l~~~~~~~~~~~i~~~v~~~~--~~i~sl~~l~~~S~ig 200 (473)
T PLN03074 134 WKNVGLAFNCTFLLFGSVIQLIACASNI-----YYINDNLDKRTWTYIFGACCATT--VFIPSFHNYRIWSFLG 200 (473)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhh-----hhhCCCcCCCeEEeehHHHHHHH--HHccCHHHHHHHHHHH
Confidence 8766655444444555556666555444 222 2234444333444333333 3333466666655544
No 88
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=95.86 E-value=2.9 Score=43.97 Aligned_cols=317 Identities=13% Similarity=0.013 Sum_probs=155.8
Q ss_pred cCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHh--hhhhccCccCchHHHHHhhcC
Q psy14002 39 AGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFV--KPMREASYVTMLDPFQQAYGN 116 (454)
Q Consensus 39 agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~--~~~r~~~~~T~~d~l~~Ryg~ 116 (454)
.+|+-++|-...--.+...+-.+.. .++...+.|++....-+...+|..+...++. -+.-..-....|...|.-||-
T Consensus 37 ~~rtWg~~~~~~~W~~~~~nv~~~~-~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi 115 (497)
T COG1953 37 EQRTWGWWNYFALWLGMVHNVPTYM-LAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGI 115 (497)
T ss_pred ccCcchHHHHHHHHHHhhccHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhh
Confidence 3566666655444333333333222 2333445677765433334444444332221 111122347889999999998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCC---C------------chhhhhhhhhhhhhhhchhcchhh
Q psy14002 117 RIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAI---S------------NAQPYLKEPNMTIFSKIDWLGTVE 181 (454)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi---~------------~~~~i~i~~~v~~~Y~~t~~GGl~ 181 (454)
.....-.+.-.+..+.|-..|-+..|..++.+. ..+++. + ...+-++..++.+. ....|++
T Consensus 116 ~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL-~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l---~~~~g~~ 191 (497)
T COG1953 116 YGANFPALIRAIVAIVWYGVQTYAGGLAVNLLL-GSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLL---VLFKGME 191 (497)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHhccccccCCccccccCCcHHHHHHHHHHHHHHHH---HHhcCHH
Confidence 876666666677778899999998887773332 222221 1 12233333333333 5678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCc-hhhHHHHHHHHHHhh----hc
Q psy14002 182 TKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKD-YGLWIEGMLLLAFGG----IP 256 (454)
Q Consensus 182 av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~ 256 (454)
.+=+-..+.+- +..+....+ +.....+ .||.+.+.+. +. +..+..+ .+.+.. .+....+. ..
T Consensus 192 ~Ir~~~~~a~p--~~~~~~~gl---~Iw~~~~-a~g~~~~~~~-p~-----~~~~~~~~~w~~~~-~~~~~v~~~Atl~l 258 (497)
T COG1953 192 SIRKFETWAGP--LVYIAMLGL---AIWALVK-AGGSSILGEL-PA-----GTVSGSNSSWAFLA-GIAAWVGFWATLAL 258 (497)
T ss_pred HHHHHHHHhch--HHHHHHHHH---HHHHHHh-cCCcCccccC-CC-----CCCCcchhHHHHHH-HHHHHHHHHHHHhc
Confidence 88888888864 333331222 2232333 3553322221 11 1122222 122221 11122222 35
Q ss_pred chhHHHHHhccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHH
Q psy14002 257 WQSYFQRVLSLRSTKAAYHLSTLSALLCF-SMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVA 335 (454)
Q Consensus 257 ~p~~~qr~~aaks~~~ar~~~~~~~~~~~-~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~ 335 (454)
+..-+.|+ +||+|+.+++..++-.+.. ++.++-+...-.+..+| |+ +.-||.+.+ .+..+....
T Consensus 259 N~~DFsRf--a~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~ly-------G~--~~w~P~di~----~~~~~~~~~ 323 (497)
T COG1953 259 NIPDFTRF--AKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILY-------GE--TIWDPLDIV----ARFLSGFYA 323 (497)
T ss_pred CCchhhcc--cCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhh-------Cc--ccCCHHHHH----HHhccchHH
Confidence 66667776 6788888888655543332 23333333333333333 22 123444433 333333333
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCCeehhHHHHHHHHHHH
Q psy14002 336 FFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVM 392 (454)
Q Consensus 336 gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~Ri~~~~i~i~a~~la 392 (454)
. ....+.=+++|...++.+..-.-.+|+-.-+ |+.-+.|-...+-+++++++.
T Consensus 324 ~--fl~~l~~~iati~~Ni~aN~vsp~~D~s~l~--Pk~in~krg~liaA~ial~~~ 376 (497)
T COG1953 324 A--FLAGLTFAVATISTNIAANIVSPGYDLSALF--PKYINIKRGGLIAAIIALLIC 376 (497)
T ss_pred H--HHHHHHHHHHHHhhhHHhccCChHHHHHHhc--ccccchhhhHHHHHHHHHHHc
Confidence 3 1223445667777777777777788886653 444443223333444444443
No 89
>KOG1287|consensus
Probab=95.52 E-value=0.94 Score=47.56 Aligned_cols=332 Identities=13% Similarity=0.078 Sum_probs=156.4
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHH--HHHHHHHHHHHHHHHHhh---hhhccCccCchHHHHHhh
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQ--VPLGYSLALVVGALLFVK---PMREASYVTMLDPFQQAY 114 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~--~~~~~~l~~~~~~~~~~~---~~r~~~~~T~~d~l~~Ry 114 (454)
.|+++.+-...-.+.+.+|++-|....+.--..|-.+.. ..+..++-....++-.+. -++|.|.. .-|+.+-|
T Consensus 11 ~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd--~ayi~~af 88 (479)
T KOG1287|consen 11 KKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGD--YAYISEAF 88 (479)
T ss_pred cceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcc--hhhHHHHh
Confidence 466777666666667778887777655554444422221 111111111223333333 35666543 35788889
Q ss_pred cCcchhHHHHHHHHHHHHHH-HHHHHhhhHh-hhccccccccC---CCchhhhhhhhhhhhhhhchhcchhhHHHHHHHH
Q psy14002 115 GNRIGGLLFLPALCGDVFWI-ASVLSSLGSV-VDTLCLSFPFA---ISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWI 189 (454)
Q Consensus 115 g~~~~~~~~~~~~~~~~~~~-~~ql~~~g~i-~~~~~~~~~~g---i~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~i 189 (454)
|+.........+.+...+.. +.+-...+.. + +..++ .|....-.+ +...+.+ ...=+..+|=+.-.+
T Consensus 89 g~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l-----~p~fp~c~~p~~~~~ll-a~~~l~~--lt~~n~~~V~~a~~v 160 (479)
T KOG1287|consen 89 GPFPAFLFLWVSLLIIVPTSAAIIALTFATYLL-----KPFFPLCDVPRVASKLL-AAALLVL--LTLINSFSVKWATRV 160 (479)
T ss_pred ccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----cccCCCCCCchHHHHHH-HHHHHHH--HHHHhhhhhhHHHHH
Confidence 99876666666665555543 4444444543 4 55554 444444444 3333333 444455666688888
Q ss_pred HHHHH-HHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHH-HhhhcchhHHHHHhcc
Q psy14002 190 EGMLL-LAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLA-FGGIPWQSYFQRVLSL 267 (454)
Q Consensus 190 Q~~~~-il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~qr~~aa 267 (454)
|.++. .-++.+.+++ ++=......|..++..+ +++.+ .+. +...+ +..+..+ +++-.|-..---.=.-
T Consensus 161 q~~ft~~Kl~al~lIi--i~G~~~~~~g~~~~~~~-----~~f~g-~~~-~~g~i-~lafysglfa~~GWd~lN~vteEi 230 (479)
T KOG1287|consen 161 QIVFTIAKLLALLLII--ITGLYLLFWGSTQNFEN-----SEFEG-SDT-DVGNI-ALAFYSGLFAFSGWDYLNYVTEEI 230 (479)
T ss_pred HHHHHHHHHHHHHHHH--HhchheeEecccccccc-----ccccc-CcC-chHHH-HHHHHHhhhcccCchhhccchHhh
Confidence 85411 1111111111 11111111122222211 11111 111 11222 2222222 2222222111111123
Q ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHH
Q psy14002 268 R-STKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAV 346 (454)
Q Consensus 268 k-s~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~ 346 (454)
| ..|+..|+...+-.++..+++...+..+.+ +-|| +..++|.+.-...++.+|.+. -.+-..+--..
T Consensus 231 knP~ktLP~Ai~isi~lvt~iYil~NvAy~~v--ls~~---------e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~ 298 (479)
T KOG1287|consen 231 KNPRRTLPRAILISIPLVTVIYVLVNVAYFTV--LSPD---------EILSSDAVAVTFADRILGVFA-WAIPFSVALSL 298 (479)
T ss_pred cCccccchHHHHHhhHHHHHHHHHhHhheeEe--cCHH---------HhcccchHHHHHHHHhccchH-HHHHHHHHHHh
Confidence 3 456788888888777777777655433222 1222 235566677778888888776 22222222234
Q ss_pred HhhhhhHHHhhhhhhhHHHHHhhcC---C----CCCCC----eehhHHHHHHHHHHHhcC-CchHHHHHHHHH
Q psy14002 347 MSSADAGILSSSSMFTRNIYKLSFR---P----KLTPN----WVAFFGLGAVTAAVMSSA-DAGILSSSSMFT 407 (454)
Q Consensus 347 mST~ds~l~a~ss~l~~Di~~~~~~---~----~~s~~----Ri~~~~i~i~a~~la~~~-~~~i~~l~~~~~ 407 (454)
++++++.+.+.|-. ++..-.+ | ..+.+ |..++.-+..+++..+.. .+++++...+..
T Consensus 299 ~G~~n~~ifs~SR~----~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~ 367 (479)
T KOG1287|consen 299 IGSLNSVIFSSSRL----FYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAY 367 (479)
T ss_pred hhhhhhHHHHHHHH----HHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444544444433 3322211 1 12222 667777788887777765 345666555544
No 90
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=95.49 E-value=0.0024 Score=65.71 Aligned_cols=145 Identities=15% Similarity=0.093 Sum_probs=84.3
Q ss_pred ccChHHHHHHHHHHhhccccccccchHHHhcchhH-HHHHHHHHHHHHHHHHHHhhhhh----ccCccCchHHHHHhhcC
Q psy14002 42 NVGLFVGVLTLTATWVGGGYINATAEALFTTGLVW-CQVPLGYSLALVVGALLFVKPMR----EASYVTMLDPFQQAYGN 116 (454)
Q Consensus 42 sl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~-~~~~~~~~l~~~~~~~~~~~~~r----~~~~~T~~d~l~~Ryg~ 116 (454)
+-+++...+.+..+.+|++ .++.|-..++.|+.. ....+..+.........+.+-.+ +.+..|.+|.-++-||+
T Consensus 2 ~~s~~~~~~~l~~~~iG~G-~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 2 KGSWFSAFFNLINSIIGAG-ILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CccHHHHHHHHHHHHHhHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 4466777777877777654 566777777777643 22222222222333444554443 35899999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhHhhhcccccccc---CCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 117 RIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPF---AISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~---gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
+.+.+..+...+..++....-+...+..++.+. +... ..+.....++...++..- +..--++...+...+.
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~i~~pl--s~~~~l~~l~~~s~~~ 154 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLI-PSFFGDLFISRYVWIIIFALIVLPL--SFLKNLKSLRYLSILG 154 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccc-ccccccccccccccccccccccccc--cccchhhHHHHHhhhh
Confidence 987777666655555444444444444441111 2221 234445555555555555 6666666666666666
No 91
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=94.68 E-value=6.4 Score=40.93 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=30.2
Q ss_pred hHHHHHHHh-CchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHH
Q psy14002 321 VLPLVLKEL-TPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNI 365 (454)
Q Consensus 321 ~~p~l~~~~-lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di 365 (454)
.+|....|. ++..+..++...++-|.+|+.-|.+-...+.+.++.
T Consensus 290 ~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~~ 335 (439)
T COG0733 290 VLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKF 335 (439)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445554432 234556677777888888888888888887776553
No 92
>KOG1286|consensus
Probab=94.64 E-value=0.76 Score=49.54 Aligned_cols=328 Identities=13% Similarity=0.001 Sum_probs=158.1
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHH-HHHHHHHHHHHHHHhhhhhccCc--cCchHHHHHhhcC
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVP-LGYSLALVVGALLFVKPMREASY--VTMLDPFQQAYGN 116 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~-~~~~l~~~~~~~~~~~~~r~~~~--~T~~d~l~~Ryg~ 116 (454)
.|+++++-+.+.-+++.+|++-++|......+.|-.+.... +-..+..++.+.-++..--+.-. -+..-+-.+-.|+
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e 108 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGE 108 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeCc
Confidence 58889999999999999999999999999999887665421 11112233333333333222211 1222233333333
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhHhhhcccccccc----------CC--Cchhhhhhhhhhhhhhhc-hhcchhhHH
Q psy14002 117 RIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPF----------AI--SNAQPYLKEPNMTIFSKI-DWLGTVETK 183 (454)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~----------gi--~~~~~i~i~~~v~~~Y~~-t~~GGl~av 183 (454)
......+.-..+-.+.-.++|..+.+..+ +..+ +. ..+..+.+..++++.... -.+||.+=+
T Consensus 109 ~~aF~~gWny~l~y~i~~a~e~~a~s~~~-----~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 109 SLAFAIGWNYLLEYVIGLAAEARAWSSYL-----DYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----HHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 34556666666667777899999999999 5543 22 223444444444333200 223666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcc-hhHhhhhh---cCccCCCCCCCchhhHHHHHHHHHHhhhcchh
Q psy14002 184 DYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLK-EPNMTIFS---KVDWLGTVETKDYGLWIEGMLLLAFGGIPWQS 259 (454)
Q Consensus 184 ~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~-~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 259 (454)
.....+- ..++ .++ +.++ ... ||.. +....... ++| +.+.+.+.....+......+++...-.
T Consensus 184 ~~~~kvl-----~~v~-~~I---l~iV-i~~-G~~~~d~~~~ig~~y~~~~--g~F~p~gf~Gv~s~~~~~~fsf~G~e~ 250 (554)
T KOG1286|consen 184 LAFNKIL-----TAVG-FII---LAIV-IIA-GGGPADVKNWIGFRYWHDP--GAFFPFGFKGVLSGAATAFFSFIGFEL 250 (554)
T ss_pred HHHHHHH-----HHHH-HHH---hhee-eec-CCCcCCcCCCcCccccCCC--CCcCCCCcceeeHHHHHHHHHHhhHHH
Confidence 6555544 2333 222 1122 221 3332 21111111 110 112222222233333333444433333
Q ss_pred HHHHHhccCCHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHH-HhCchHHHH
Q psy14002 260 YFQRVLSLRSTK-AAYHLSTLSALLCFSMAI-PAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLK-ELTPNWVAF 336 (454)
Q Consensus 260 ~~qr~~aaks~~-~ar~~~~~~~~~~~~~~~-~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~-~~lp~~l~g 336 (454)
.-.-.-++|||+ +..++..........+++ ....+|+..-...|+ .+++.+.+.--. ...-++...
T Consensus 251 va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~-----------L~~~~~~~spF~iai~~~~~k~ 319 (554)
T KOG1286|consen 251 VATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPR-----------LDPGAALASPFVIAIGNAGAKY 319 (554)
T ss_pred HHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccc-----------cCCCCccccHHHHHHhccCccc
Confidence 334445666643 233333222222222222 222234443322232 233333322111 222334444
Q ss_pred ---HHHHHHHHHHHhhhhhHHHhhhhhh---hHHHHHhhcCCCCCCC---eehhHHHHHHHHHHHhcCC
Q psy14002 337 ---FGLGAVTAAVMSSADAGILSSSSMF---TRNIYKLSFRPKLTPN---WVAFFGLGAVTAAVMSSAD 396 (454)
Q Consensus 337 ---l~~~~~laA~mST~ds~l~a~ss~l---~~Di~~~~~~~~~s~~---Ri~~~~i~i~a~~la~~~~ 396 (454)
++-++++.+..|.+++.+.+.+-.+ ++|=+.|-+-.+.+.| -..+++.++.+.+.++..+
T Consensus 320 ~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~ 388 (554)
T KOG1286|consen 320 LPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFS 388 (554)
T ss_pred cchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 7777788888888888888776543 4554443222222222 3356667777777776655
No 93
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=94.16 E-value=9.2 Score=40.63 Aligned_cols=87 Identities=11% Similarity=0.052 Sum_probs=51.8
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHH-HHHHHHHHHHHHHHHHHhhhhhccC--ccCchHHHHHhhcC
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWC-QVPLGYSLALVVGALLFVKPMREAS--YVTMLDPFQQAYGN 116 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~-~~~~~~~l~~~~~~~~~~~~~r~~~--~~T~~d~l~~Ryg~ 116 (454)
.|+++.+-+.+-.+++.+|.. +.+......|.+.. |+.++..+..+..+.-+++.-.+.. .-...+|.++.+|+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~---~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~ 82 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA---NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGP 82 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC---chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCc
Confidence 467888888777777777632 23322334565443 3334443333444555666655442 35789999999999
Q ss_pred cchhHHHHHHHHH
Q psy14002 117 RIGGLLFLPALCG 129 (454)
Q Consensus 117 ~~~~~~~~~~~~~ 129 (454)
+.+.+.+......
T Consensus 83 ~~gf~~~w~~~~~ 95 (496)
T PRK15238 83 KFAFIGTFMWFAS 95 (496)
T ss_pred hHHHHHHHHHHHH
Confidence 9876655443333
No 94
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=89.48 E-value=27 Score=35.64 Aligned_cols=94 Identities=13% Similarity=0.008 Sum_probs=55.0
Q ss_pred CcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchh--HHHHHHHHHHHHHHHHHHHhhhhhccCccCchHH
Q psy14002 32 GEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLV--WCQVPLGYSLALVVGALLFVKPMREASYVTMLDP 109 (454)
Q Consensus 32 ~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~--~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~ 109 (454)
|-.||.=.+| |.+..=-+++--|++=+.|. -.+..+|.. .+|..+|..+.-.+==+.-.-..-|++..|++|.
T Consensus 45 DGvDYvP~~~----~vlfghhf~sIAGaGPI~GP-i~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i 119 (376)
T PF02554_consen 45 DGVDYVPTNK----WVLFGHHFASIAGAGPIVGP-ILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEI 119 (376)
T ss_pred CCCCCCCCch----HHhhHHHHHHHhccccchHH-HHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 6677875554 45555555555566666664 444667764 3465555433221110001111246778999999
Q ss_pred HHHhhcCcchhHHHHHHHHHH
Q psy14002 110 FQQAYGNRIGGLLFLPALCGD 130 (454)
Q Consensus 110 l~~Ryg~~~~~~~~~~~~~~~ 130 (454)
.++.-|++.+.+..+...+..
T Consensus 120 ~~~~lG~~~~~lf~~f~~~~l 140 (376)
T PF02554_consen 120 AGKYLGKRAKKLFLIFIFFLL 140 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876665544443
No 95
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=86.07 E-value=4.4 Score=43.19 Aligned_cols=123 Identities=14% Similarity=-0.031 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCc--
Q psy14002 241 GLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAES-- 318 (454)
Q Consensus 241 ~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~-- 318 (454)
..|.+..+.....--..|+++++....|++|++|+..+..+++++...++..+.+.......|+...... +.+..-+
T Consensus 239 ~~~~~~~l~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~l 317 (493)
T COG0591 239 IAWGTLFLGYFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLL-NPELVFPYL 317 (493)
T ss_pred HHHHHHHhhhhcCchhhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCC-CHHHHHHHH
Confidence 3455555565566678899999888888899999999999999998888889999999888764111100 1111112
Q ss_pred -cchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHh
Q psy14002 319 -NSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKL 368 (454)
Q Consensus 319 -~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~ 368 (454)
...+|.... -.+..-.++++++++.|..++.....+--+-+++.+|
T Consensus 318 ~~~~~p~~~~----g~~~~ailaAvmSt~ss~ll~~ss~~t~Diyk~~~~~ 364 (493)
T COG0591 318 ILALFPPWIA----GLLLAAILAAVMSTASSQLLVASSAITRDIYKRFLRK 364 (493)
T ss_pred HHHHChHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCC
Confidence 333443332 2455566777899999999999999999999999987
No 96
>KOG1289|consensus
Probab=80.47 E-value=88 Score=33.60 Aligned_cols=163 Identities=11% Similarity=-0.063 Sum_probs=77.0
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCc-hHHHHH
Q psy14002 259 SYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTP-NWVAFF 337 (454)
Q Consensus 259 ~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp-~~l~gl 337 (454)
|+.... .+.+|++.|++..+.....+...+.. +++..- .-||... .-..+..+.+-....+.++ .+..++
T Consensus 273 H~aEE~--~nAsk~aPrgIi~s~~i~~i~gw~~~-I~i~~~-i~~D~~~-----v~ns~~g~p~~~i~~~~lg~k~~v~~ 343 (550)
T KOG1289|consen 273 HMAEET--KNASKAAPRGIISSIAIGFILGWIII-IGIAYT-IPDDLDA-----VLNSSLGQPIVQIYYQALGKKGAVFL 343 (550)
T ss_pred HHHHHh--cchhhhccHHHHHHHHHHHHHHHHHH-HHHHHh-ccchHHH-----HhcCCCCChHHHHHHHhcCCCceEeh
Confidence 555544 44567788888877777666655433 333322 2123100 0112223333344444444 344455
Q ss_pred HHHHHHHHHHhhhhhHHHh--hhhhhhHHHHHhhcC--CCCCCC----eehhHHHHHHHHHHHhcCCchHHH---HHHHH
Q psy14002 338 GLGAVTAAVMSSADAGILS--SSSMFTRNIYKLSFR--PKLTPN----WVAFFGLGAVTAAVMSSADAGILS---SSSMF 406 (454)
Q Consensus 338 ~~~~~laA~mST~ds~l~a--~ss~l~~Di~~~~~~--~~~s~~----Ri~~~~i~i~a~~la~~~~~~i~~---l~~~~ 406 (454)
....+++..++...+...+ ..=.++||=..|+-| ++.+++ .-++...-++++++.+....+... +...+
T Consensus 344 ~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a 423 (550)
T KOG1289|consen 344 LSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAA 423 (550)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5555555555554443322 122356665555432 122222 445666666666666654433332 22222
Q ss_pred HHhhhhhcccccccccccCCCCcc
Q psy14002 407 TRNIYKLSFRPKVDLTPDEHPHYQ 430 (454)
Q Consensus 407 ~~~~~~~~f~p~~~~~~~k~~~~~ 430 (454)
......+...|.++.++.+|.+.+
T Consensus 424 ~i~l~~Ay~iP~~~rlf~~r~~f~ 447 (550)
T KOG1289|consen 424 AIALFIAYAIPIFCRLFFGRDDFR 447 (550)
T ss_pred HHHHHHHHHHhHHhheeecccccC
Confidence 223334556677777776664433
No 97
>KOG1304|consensus
Probab=80.34 E-value=25 Score=36.88 Aligned_cols=79 Identities=10% Similarity=0.025 Sum_probs=49.5
Q ss_pred HHhhcCcchhHHHHHHHHHHHHHH-------HHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHH
Q psy14002 111 QQAYGNRIGGLLFLPALCGDVFWI-------ASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETK 183 (454)
Q Consensus 111 ~~Ryg~~~~~~~~~~~~~~~~~~~-------~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av 183 (454)
.++||+..|.+.-...++..+++. +-++..+-.. ...-.+|...-+++.....+.- ....-+|..
T Consensus 131 ~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~------~~~~~~s~~~~i~~~~~~~lll--~~Ir~Lk~L 202 (449)
T KOG1304|consen 131 LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE------HSPGVLSVRLYILIQLPPLLLL--NLIRNLKIL 202 (449)
T ss_pred HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc------cCCCCccHHHHHHHHHHHHHHH--HHHHhhHHh
Confidence 778888888777666666666543 3333332211 1123345555556666666666 888889999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14002 184 DYGLWIEGMLLLAFGG 199 (454)
Q Consensus 184 ~~TD~iQ~~~~il~~~ 199 (454)
+-...+-.+ ++++|
T Consensus 203 sp~Sl~Anv--~~~~g 216 (449)
T KOG1304|consen 203 SPFSLFANV--FILVG 216 (449)
T ss_pred hHHHHHHHH--HHHHH
Confidence 888888853 67777
No 98
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=64.79 E-value=89 Score=33.60 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=58.0
Q ss_pred CcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcc-hhH-HHHHHHHHHHHHHHHHHHhhhhhccCccCchHH
Q psy14002 32 GEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTG-LVW-CQVPLGYSLALVVGALLFVKPMREASYVTMLDP 109 (454)
Q Consensus 32 ~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G-~~~-~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~ 109 (454)
|-.||.=.+| +++..--+++--|++=+.| |..+.++| ..+ .|..+|..++--+==++..=..-|++..|++|.
T Consensus 45 DG~DYVPtnk----~vlfGhHFaaIAGAGPivG-PvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~i 119 (575)
T COG1966 45 DGVDYVPTNK----WVLFGHHFASIAGAGPIVG-PALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEI 119 (575)
T ss_pred CCcccccCCc----hhhhHHHHHHHhccCcchh-HHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHH
Confidence 7788875555 4555555566556676766 56777788 444 455555433222211111112246678999999
Q ss_pred HHHhhcCcchhHHHHHHHHHHH
Q psy14002 110 FQQAYGNRIGGLLFLPALCGDV 131 (454)
Q Consensus 110 l~~Ryg~~~~~~~~~~~~~~~~ 131 (454)
.++--|++.+.+..+..++.++
T Consensus 120 a~~~lG~~a~~~~~~~~l~ili 141 (575)
T COG1966 120 AGKYLGRTAKVFFLLLALILLI 141 (575)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999998776655544443
No 99
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=61.07 E-value=8.7 Score=27.01 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccCCCCccc
Q psy14002 4 VYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEE 35 (454)
Q Consensus 4 ~~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~d 35 (454)
....+..++++++.+++-+|+.|++++++.||
T Consensus 9 ~~~~~~~v~~~~~F~gi~~w~~~~~~k~~~e~ 40 (49)
T PF05545_consen 9 FARSIGTVLFFVFFIGIVIWAYRPRNKKRFEE 40 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhhHHH
Confidence 34455666677777788888876554324444
No 100
>KOG1291|consensus
Probab=50.50 E-value=3.3e+02 Score=28.81 Aligned_cols=75 Identities=15% Similarity=-0.035 Sum_probs=45.6
Q ss_pred HHHHhhhhhccCccCchHH---HHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhh
Q psy14002 91 ALLFVKPMREASYVTMLDP---FQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPN 167 (454)
Q Consensus 91 ~~~~~~~~r~~~~~T~~d~---l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~ 167 (454)
+.++-+.--|.|..|--|+ =++.|.+..|....+..=+..+.-=..|..|.+..+ +.++++|.|.++++...
T Consensus 73 alllQ~LaARLGvVTG~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAl-----niL~~IPL~~GVliTil 147 (503)
T KOG1291|consen 73 ALLLQRLAARLGVVTGKHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIAL-----NILSNIPLWAGVLITIL 147 (503)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHhCCcHHHHHHHHHH
Confidence 3444444556787776555 455555555544433332333333345667778888 88899999999998865
Q ss_pred hhh
Q psy14002 168 MTI 170 (454)
Q Consensus 168 v~~ 170 (454)
=+.
T Consensus 148 D~f 150 (503)
T KOG1291|consen 148 DTF 150 (503)
T ss_pred HHH
Confidence 443
No 101
>PRK15015 carbon starvation protein A; Provisional
Probab=50.33 E-value=2.2e+02 Score=31.51 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=52.9
Q ss_pred CcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchh--HHHHHHHHHHHHHHHHHHHhhhhhccCccCchHH
Q psy14002 32 GEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLV--WCQVPLGYSLALVVGALLFVKPMREASYVTMLDP 109 (454)
Q Consensus 32 ~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~--~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~ 109 (454)
|-.||.=.+|..-. .=-+++--|++=++|..-.+ +.|+- -+|..+|..+.-.+==+.-.-..-|++.+|+.|.
T Consensus 76 DG~DYvPt~k~VLf----GHHFasIAGAGPivGPvlAa-~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~i 150 (701)
T PRK15015 76 DGLDYVPTDKKVLF----GHHFAAIAGAGPLVGPVLAA-QMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGEL 150 (701)
T ss_pred CCCCcCcCCccchh----HHHHHHHhccCccHHHHHHH-HHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHH
Confidence 67788876666544 44455555677777755444 67763 3454444332111100000001235677999999
Q ss_pred HHHhhcCcchhHHHHHHHH
Q psy14002 110 FQQAYGNRIGGLLFLPALC 128 (454)
Q Consensus 110 l~~Ryg~~~~~~~~~~~~~ 128 (454)
.++--|++.+.+..+...+
T Consensus 151 a~~~iG~~~~~lfli~i~~ 169 (701)
T PRK15015 151 VKEEMGPTAGVIALVACFM 169 (701)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999987666554433
No 102
>PRK01741 cell division protein ZipA; Provisional
Probab=46.64 E-value=16 Score=36.41 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=23.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCC
Q psy14002 2 VDVYGLAGIIIFYTLVLAIGVWAGTKQKN 30 (454)
Q Consensus 2 ~~~~~~~i~~~y~~~~l~ig~~~~r~~~~ 30 (454)
+|++.++.-++-++++++-|+|+.||-|+
T Consensus 3 Ln~iliILg~lal~~Lv~hgiWsnRrEKS 31 (332)
T PRK01741 3 LNTILIILGILALVALVAHGIWSNRREKS 31 (332)
T ss_pred ceehHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 67777666677777888999999999884
No 103
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=40.30 E-value=32 Score=24.21 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccC
Q psy14002 5 YGLAGIIIFYTLVLAIGVWAGTKQK 29 (454)
Q Consensus 5 ~~~~i~~~y~~~~l~ig~~~~r~~~ 29 (454)
.+...++.++++.+++-+|+.|+.+
T Consensus 11 a~~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 11 ADSWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3445555566667777777776544
No 104
>KOG1305|consensus
Probab=37.73 E-value=4.9e+02 Score=27.08 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHH
Q psy14002 44 GLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLL 122 (454)
Q Consensus 44 ~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~ 122 (454)
+.......+..|.+|++ .++.|-.--..|....+ .....++......+++.+--++.+..|.+++-++-+|+..+...
T Consensus 7 s~~~~v~nl~~ti~GaG-Il~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g~~~~ 85 (411)
T KOG1305|consen 7 SFRSAVFNLVNTIMGAG-ILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLGKVDA 85 (411)
T ss_pred chhhhHHHHHhhhhccH-HHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCceeee
Confidence 44455566666666654 44555544456654333 22233333333445555555566666999999999999985555
Q ss_pred HHHHHHH
Q psy14002 123 FLPALCG 129 (454)
Q Consensus 123 ~~~~~~~ 129 (454)
++...+.
T Consensus 86 ~v~~~~~ 92 (411)
T KOG1305|consen 86 AVAVKCF 92 (411)
T ss_pred hhhHHhh
Confidence 4444333
No 105
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.71 E-value=29 Score=29.78 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHh-hcccC
Q psy14002 4 VYGLAGIIIFYTLVLAIGVWA-GTKQK 29 (454)
Q Consensus 4 ~~~~~i~~~y~~~~l~ig~~~-~r~~~ 29 (454)
|..++++++.++++++.+.+. +||.|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556555555544444444 34333
No 106
>PF14150 YesK: YesK-like protein
Probab=28.56 E-value=2.5e+02 Score=22.16 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhc
Q psy14002 9 GIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVG 58 (454)
Q Consensus 9 i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~s 58 (454)
....++.+...+.++.+||.++++ -| ..++......++..-.+|
T Consensus 4 lg~~~~ii~f~~S~~lr~r~p~k~-~~-----~il~~ililis~~~v~~S 47 (81)
T PF14150_consen 4 LGIVTFIIVFGVSVLLRKRFPKKQ-PE-----IILPLILILISLLTVLIS 47 (81)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcc-hh-----HHHHHHHHHHHHHHHHHH
Confidence 344566667777888877765312 33 333444455555444444
No 107
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=25.53 E-value=6.5e+02 Score=24.67 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=44.3
Q ss_pred CccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCCeehhHHHHHHHHHHHhcCC
Q psy14002 317 ESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSAD 396 (454)
Q Consensus 317 ~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~Ri~~~~i~i~a~~la~~~~ 396 (454)
.|++-+.....+.+++|++-++......-..-.....+.. -.|+.+.+.-|+ ++.-.....+.+.+...+..+.
T Consensus 59 ~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~-----~~~~i~~~~lp~-TP~~~i~~~~ll~~~y~a~~G~ 132 (320)
T PF03845_consen 59 FPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLRE-----FSEFIKTYLLPE-TPIWVIILLFLLVAAYAARKGI 132 (320)
T ss_pred CCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCc-CCHHHHHHHHHHHHHHHHhcCH
Confidence 3556677888888998888766654443333332222222 223334333222 3334455556677777777777
Q ss_pred chHHHH
Q psy14002 397 AGILSS 402 (454)
Q Consensus 397 ~~i~~l 402 (454)
+.+...
T Consensus 133 e~i~R~ 138 (320)
T PF03845_consen 133 EVIARV 138 (320)
T ss_pred HHHHHH
Confidence 666543
No 108
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=24.85 E-value=2.6e+02 Score=25.95 Aligned_cols=89 Identities=17% Similarity=0.096 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHH
Q psy14002 5 YGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYS 84 (454)
Q Consensus 5 ~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~ 84 (454)
.+......|-.+++.+|.+.+.|.| +.+|=+--.|.+..-....+......-...+....+ +++...... ...
T Consensus 149 ~~~~~~~~y~~~Ll~~~~~la~~~R--~~~~~~nEa~~I~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~ 221 (238)
T PF00003_consen 149 IWLILSLGYNGLLLLIGFFLAFKTR--NVPSNFNEARYIAFAIYNITIIWIIFIPLYFVTDGE--WRFLIISFG---ILL 221 (238)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhC--CCCcccchhhhHhHhHHHHHHHHHHhhhheeeccch--HHHHHHHHH---HHH
Confidence 3445677888888899988887777 444445555655444444333322222222222222 333332221 111
Q ss_pred HHHHHHHHHHhhhhhc
Q psy14002 85 LALVVGALLFVKPMRE 100 (454)
Q Consensus 85 l~~~~~~~~~~~~~r~ 100 (454)
-.....+..+.||.+.
T Consensus 222 ~~~~~l~~lF~PKi~~ 237 (238)
T PF00003_consen 222 CATVTLGLLFIPKIYI 237 (238)
T ss_pred HHHHHHHHhhhheEEe
Confidence 2233445678998764
No 109
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=23.27 E-value=1.1e+02 Score=22.89 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=18.5
Q ss_pred CchhhHHHHHHHHH-HHHHHHHHhhcc
Q psy14002 2 VDVYGLAGIIIFYT-LVLAIGVWAGTK 27 (454)
Q Consensus 2 ~~~~~~~i~~~y~~-~~l~ig~~~~r~ 27 (454)
||..|++=+++..+ +.+..|++++|.
T Consensus 1 M~i~DiiQii~l~AlI~~pLGyl~~~~ 27 (62)
T PF11120_consen 1 MNISDIIQIIILCALIFFPLGYLARRW 27 (62)
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 68889985555544 577889888654
No 110
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=23.14 E-value=9.3e+02 Score=25.66 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=31.2
Q ss_pred hHHHHHHHh-CchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHH
Q psy14002 321 VLPLVLKEL-TPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRN 364 (454)
Q Consensus 321 ~~p~l~~~~-lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~D 364 (454)
.+|....+. .++....++...++-+.+++.-+.+-...+.+.+.
T Consensus 333 ~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~ 377 (523)
T PF00209_consen 333 VLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDE 377 (523)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeec
Confidence 456555543 45677778887888888888888888777776444
No 111
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.11 E-value=1.2e+02 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=18.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccc
Q psy14002 3 DVYGLAGIIIFYTLVLAIGVWAGTKQ 28 (454)
Q Consensus 3 ~~~~~~i~~~y~~~~l~ig~~~~r~~ 28 (454)
.+..++.+++.+++-+..|+|.+||.
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666667778899998875
No 112
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=20.68 E-value=1.4e+02 Score=31.34 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=48.9
Q ss_pred chHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhh
Q psy14002 106 MLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFS 172 (454)
Q Consensus 106 ~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y 172 (454)
+.+..++.+|+..+.+.+++..+.++.-......+++..+ ++.++++|...+.+.+++....
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f-----~~~~~isY~~~v~i~~l~S~~l 328 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFF-----AQYVPLSYRTLVFILGGFSMVV 328 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhcCCcHHHHHHHHHHHHHHH
Confidence 4456788899998888887777777777788888999998 8887788888777766666664
Done!