Query psy14002
Match_columns 454
No_of_seqs 146 out of 1637
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 17:02:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xq2_A Sodium/glucose cotransp 100.0 2.3E-60 8E-65 510.4 25.0 427 2-442 8-466 (593)
2 3dh4_A Sodium/glucose cotransp 100.0 2.1E-57 7.3E-62 481.4 20.6 397 32-442 11-437 (530)
3 2jln_A MHP1; hydantoin, transp 99.1 5.7E-09 2E-13 109.4 19.9 306 39-396 23-355 (501)
4 3l1l_A Arginine/agmatine antip 99.0 4.5E-07 1.5E-11 92.8 28.6 319 40-394 7-340 (445)
5 3gia_A Uncharacterized protein 98.6 2.3E-05 8E-10 80.0 26.9 321 40-396 5-339 (444)
6 4djk_A Probable glutamate/gamm 97.3 0.055 1.9E-06 55.8 24.7 297 40-366 10-324 (511)
7 2wsw_A BCCT family betaine/car 97.2 0.061 2.1E-06 55.5 22.9 103 259-364 338-442 (509)
8 4ain_A Glycine betaine transpo 95.9 0.082 2.8E-06 54.9 13.5 122 259-394 343-469 (539)
9 2a65_A Leutaa, Na(+):neurotran 61.8 1.5E+02 0.005 30.5 15.3 44 321-364 326-370 (519)
10 2jwa_A Receptor tyrosine-prote 11.4 2.3E+02 0.0077 18.7 3.2 17 13-29 24-40 (44)
No 1
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=100.00 E-value=2.3e-60 Score=510.44 Aligned_cols=427 Identities=14% Similarity=0.115 Sum_probs=327.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCC--CCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHH
Q psy14002 2 VDVYGLAGIIIFYTLVLAIGVWAGTKQKN--HGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQV 79 (454)
Q Consensus 2 ~~~~~~~i~~~y~~~~l~ig~~~~r~~~~--~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~ 79 (454)
+|+.|++++++|+++++++|+|.+||+|+ +|.|||++|||++|+|+.++|+.||++|+++++|.++.+|++|+.+.++
T Consensus 8 ~~~~d~~i~~~yl~~~~~ig~~~~r~~~~~~~~~~dy~laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~ 87 (593)
T 2xq2_A 8 LSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASY 87 (593)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTCC-------------------CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHhcCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHH
Confidence 68899999999999999999999888763 3689999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHhhhHhhhccccccccCCCc
Q psy14002 80 PLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALC-GDVFWIASVLSSLGSVVDTLCLSFPFAISN 158 (454)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~-~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~ 158 (454)
.+++.++.++.++++.|++||.|.+|++|++|+|||++.|.+.+++.++ ..+.+++.|+++.+.++ +.++|+|+
T Consensus 88 ~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l-----~~~~Gi~~ 162 (593)
T 2xq2_A 88 EWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLAL-----ETILGIPL 162 (593)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-----HHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCccH
Confidence 8888888888889999999999999999999999999988888777664 45568999999999999 99999999
Q ss_pred hhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhh---h-cCccCCC
Q psy14002 159 AQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIF---S-KVDWLGT 234 (454)
Q Consensus 159 ~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~---~-~~~~~~~ 234 (454)
+.++++.++++++| |..||+|+++|||++|++ +++++ .++ +++....+.||.+++.+... + .++..+.
T Consensus 163 ~~~i~i~~~i~~~Y--t~~GGl~av~~TD~iQ~i--iml~~-~l~---v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~ 234 (593)
T 2xq2_A 163 MYSILGLALFALVY--SIYGGLSAVVWTDVIQVF--FLVLG-GFM---TTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEM 234 (593)
T ss_dssp HHHHHHHHHHHHHH--HHTTC---CCHHHHHHHH--HHHHH-HHH---HHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCS
T ss_pred HHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHH--HHHHH-HHH---HHHHHHHHcCCchhHHHHHHHHHhhChhhccc
Confidence 99999999999999 999999999999999964 77777 443 22333344466655443221 1 1222211
Q ss_pred CCC-Cch----hhHHHHH----HHHHHhh-hcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Q psy14002 235 VET-KDY----GLWIEGM----LLLAFGG-IPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMV-DW 303 (454)
Q Consensus 235 ~~~-~~~----~~~~~~~----~~~~~~~-~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~-~p 303 (454)
..+ .+. ..+.+.. ....+++ ..+|+++||++++||+|++||+.++++++..++.+...++|+.++.+ ++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~ 314 (593)
T 2xq2_A 235 ILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSD 314 (593)
T ss_dssp SCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSCHHHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTC
T ss_pred ccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 100 0111111 1223333 46788999999999999999999999999888888778889998877 21
Q ss_pred CCC-CccCC-----ccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC
Q psy14002 304 SAI-PTYGK-----NFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN 377 (454)
Q Consensus 304 ~~~-~~~~~-----~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~ 377 (454)
+.. +..+. .++..++|+++|.++ +.+|+|+.|+++++++||+|||+||.+++.|+.+++|+|+|++|||++||
T Consensus 315 ~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~~~Diy~~~~~~~~s~~ 393 (593)
T 2xq2_A 315 PQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDH 393 (593)
T ss_dssp HHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCSCCCHH
T ss_pred ccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 100 00000 011247899999999 99999999999999999999999999999999999999999989999988
Q ss_pred ------eehhHHHHHHHHHHHhc--CCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhhc
Q psy14002 378 ------WVAFFGLGAVTAAVMSS--ADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQM 442 (454)
Q Consensus 378 ------Ri~~~~i~i~a~~la~~--~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~~ 442 (454)
|+.+++++++++.++.. ..++++++.....+....++++|++.+.+|||.|.+|.+.|...+...
T Consensus 394 ~~l~v~Ri~~v~~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~llglfwkr~~~~gA~~g~i~G~~~ 466 (593)
T 2xq2_A 394 KLVNVGRTAAVVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIPF 466 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88999999999999973 345788877776667777899999999999999999999988776543
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.1e-57 Score=481.40 Aligned_cols=397 Identities=14% Similarity=0.076 Sum_probs=311.2
Q ss_pred CcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhccCccCchHHHH
Q psy14002 32 GEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQ 111 (454)
Q Consensus 32 ~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~ 111 (454)
|.|||++|||++|+|++++|+.||++|+++++|.++.+|++|+.+.++.+.+.++.++.++++.|++||.|..|+||++|
T Consensus 11 ~~~dy~laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~T~~e~l~ 90 (530)
T 3dh4_A 11 XXXXXXXAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVE 90 (530)
T ss_dssp HHHHHHCCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTCCSHHHHHH
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence 89999999999999999999999999999999999999999999887777777888888889999999999999999999
Q ss_pred HhhcCcchhHHHHHHHHH-HHHHHHHHHHhhhHhhhccccccccCCCchhhhhhhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 112 QAYGNRIGGLLFLPALCG-DVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 112 ~Ryg~~~~~~~~~~~~~~-~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
+|||++.|.+.+++.++. .+.++++|+++.+.++ +.++|+|++.++++.++++++| |..||+|+|+|||++|
T Consensus 91 ~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~-----~~~~Gi~~~~~i~i~~~i~~~Y--t~~GGl~aV~~TD~iQ 163 (530)
T 3dh4_A 91 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLAL-----ETILGIPLMYSILGLALFALVY--SIYGGLSAVVWTDVIQ 163 (530)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-----HHHTTCCHHHHHHHHHHHHHHT--TC------CCSHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHHHH--HHhcchHHHHHHHHHH
Confidence 999999888887766653 4557899999999999 9999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhh---h-cCccCC----CCCCCc--hhhH---HHHHHHHHHhhh-c
Q psy14002 191 GMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIF---S-KVDWLG----TVETKD--YGLW---IEGMLLLAFGGI-P 256 (454)
Q Consensus 191 ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~---~-~~~~~~----~~~~~~--~~~~---~~~~~~~~~~~~-~ 256 (454)
++ +|+++ .+++ . +....+.||.+++.+.+. + .++.++ +.++.. ...+ ++......+++. .
T Consensus 164 ~~--im~~g-~~~v--~-~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~ 237 (530)
T 3dh4_A 164 VF--FLVLG-GFMT--T-YMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGF 237 (530)
T ss_dssp HH--HHHHH-HHHH--H-HHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTT
T ss_pred HH--HHHHH-HHHH--H-HHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcC
Confidence 54 77777 4432 2 333333466554433221 1 122111 111110 0111 111122334444 5
Q ss_pred chhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CccCC-----ccCccCccchHHHHHHHh
Q psy14002 257 WQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAI--PTYGK-----NFTAAESNSVLPLVLKEL 329 (454)
Q Consensus 257 ~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~--~~~~~-----~~~~~~~~~~~p~l~~~~ 329 (454)
+|+++||++++||+|++||+.++++++..++.++..++|+.++.++++.. +..+. .++..++|+++|.+++ .
T Consensus 238 ~q~i~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~-~ 316 (530)
T 3dh4_A 238 NQYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ-F 316 (530)
T ss_dssp TCHHHHHHHSSSCHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-T
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-H
Confidence 78999999999999999999999999988888888899999998874310 00000 0123578999999985 9
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHHHHHHHHHHhcCC--chHHH
Q psy14002 330 TPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGLGAVTAAVMSSAD--AGILS 401 (454)
Q Consensus 330 lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i~i~a~~la~~~~--~~i~~ 401 (454)
+|+++.|+++++++||+|||+||.+++.|+.+++|+|++++|||++|| |+.+++++++++.+|...+ +++++
T Consensus 317 lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Diy~~~~~~~~s~~~~~~v~R~~~v~~~i~a~~~a~~~~~~~~~~~ 396 (530)
T 3dh4_A 317 LPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQ 396 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCSCSSHHHHHHHHHHHHHHHHHHHHGGGGGGCSCHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999999999999999989999999 9999999999999996432 35666
Q ss_pred HHHHHHHhhhhhcccccccccccCCCCcccccccchhhhhc
Q psy14002 402 SSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQM 442 (454)
Q Consensus 402 l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~~ 442 (454)
......+++..++++|++.+.+|||.|.+|.+.|...+...
T Consensus 397 ~~~~~~g~~~~~~~~~~llgl~wkr~~~~gA~~g~i~G~~~ 437 (530)
T 3dh4_A 397 YIQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIPF 437 (530)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 65555556667788899999999999999999888766544
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.07 E-value=5.7e-09 Score=109.35 Aligned_cols=306 Identities=9% Similarity=-0.080 Sum_probs=168.4
Q ss_pred cCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHH---HhhhhhccCccCchHHHHHhhc
Q psy14002 39 AGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALL---FVKPMREASYVTMLDPFQQAYG 115 (454)
Q Consensus 39 agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~---~~~~~r~~~~~T~~d~l~~Ryg 115 (454)
.+|+.+++-.+..-++..++-.++.- .+.... |++..+..++..++.++...+ .+..-.|.|.. .+++.|.+||
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~-Ga~~~~-GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~-~~v~~R~~FG 99 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIA-AGQMTS-SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN-FTVAARMPFG 99 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHH-HHHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC-HHHHTTTTSC
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHH-HHHHhc-CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC-hhhhhHhhcc
Confidence 35777877665444444443333321 112223 776655445444554443333 33444556654 8999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhHhhhcccccccc----CCC-chhhhhhhhhhhhhhhchhcchhhHHHHHHHHH
Q psy14002 116 NRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPF----AIS-NAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIE 190 (454)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~----gi~-~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ 190 (454)
.+..++.+++..+..++|.+.|....|..+ +.++ |++ .+.++++..++.+. +...|+|.+.+.+.++
T Consensus 100 ~~Gs~i~~ll~~i~~igw~~v~~~~gg~al-----~~~~~~~~g~~~~~v~~~i~~~l~~~---~~~~G~~~i~~~~~~~ 171 (501)
T 2jln_A 100 IRGSLIPITLKALLSLFWFGFQTWLGALAL-----DEITRLLTGFTNLPLWIVIFGAIQVV---TTFYGITFIRWMNVFA 171 (501)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCCHHHHHHHHHHHHHH---HHTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcCcchHHHHHHHHHHHHHH---HHHhCHHHHHHHHHHH
Confidence 999888888899999999999999888887 5543 777 46777777776666 5588999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhheeccCCCc--chhHhhhhhcCccCCCCCCCchhhHHH---HHHHHHHhhhcchhHHHHHh
Q psy14002 191 GMLLLAFGGIPWQCLSFPFAISNAQPYL--KEPNMTIFSKVDWLGTVETKDYGLWIE---GMLLLAFGGIPWQSYFQRVL 265 (454)
Q Consensus 191 ~~~~il~~~~~ii~~~~~~~~~~~~gg~--~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~qr~~ 265 (454)
. .++++. .+.. ......+ .|+ +++.+. ++ ....+.+.+ .......+...++..++|+.
T Consensus 172 ~--p~~~i~-~i~~--~~~~l~~--~g~~~~~~~~~----~~------~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~ 234 (501)
T 2jln_A 172 S--PVLLAM-GVYM--VYLMLDG--ADVSLGEVMSM----GG------ENPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC 234 (501)
T ss_dssp H--HHHHHH-HHHH--HHHHHHH--HTCCHHHHTTC----CC------SSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB
T ss_pred H--HHHHHH-HHHH--HHHHHHh--cCCcchhhhcc----CC------ccchHHHHHHHHHHHHHHHHHHhccCcccccC
Confidence 4 455554 3221 2222222 123 222211 11 011111221 11111122234566788987
Q ss_pred ccCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchH
Q psy14002 266 SLRSTKA------------AYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNW 333 (454)
Q Consensus 266 aaks~~~------------ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~ 333 (454)
|++|+ +..+..++..+.. ....++|....... ...||...+.... .-|.+
T Consensus 235 --~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~---~~~~~lG~~~~~~~-----------~~~dp~~~l~~~l--~~~~~ 296 (501)
T 2jln_A 235 --KVDPNASREGQTKADARYATAQWLGMVPAS---IIFGFIGAASMVLV-----------GEWNPVIAITEVV--GGVSI 296 (501)
T ss_dssp --CCCTTCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-----------SCSCHHHHHHHHH--TCCCH
T ss_pred --CCCccccccchhhccchHHHHHHHHHHHHH---HHHHHHHHHHHHhc-----------cccCHHHHHHHHh--ccchH
Confidence 33444 4444444433322 22334454332211 1123333322211 12333
Q ss_pred HHHHHH-HHHHHHHHhhhhh-HHHhhhhhhhHHHHHhhcCCCCCCCeehhHHHHHHHHHHHhcCC
Q psy14002 334 VAFFGL-GAVTAAVMSSADA-GILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSAD 396 (454)
Q Consensus 334 l~gl~~-~~~laA~mST~ds-~l~a~ss~l~~Di~~~~~~~~~s~~Ri~~~~i~i~a~~la~~~~ 396 (454)
+..+.+ ..++.+.++|-+. ++.+.+..+.+.. ++ .-++|..+++.+++++.++....
T Consensus 297 ~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~-~~-----~i~~~~~~~i~~vi~~~i~~~~~ 355 (501)
T 2jln_A 297 PMAILFQVFVLLATWSTNPAANLLSPAYTLCSTF-PR-----VFTFKTGVIVSAVVGLLMMPWQF 355 (501)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHS-TT-----TCCHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhC-cc-----ccchhHHHHHHHHHHHHHHHHHh
Confidence 366666 7778888888884 7888877776653 22 11225556667788877776543
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.96 E-value=4.5e-07 Score=92.82 Aligned_cols=319 Identities=11% Similarity=-0.066 Sum_probs=176.0
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCcc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNRI 118 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~~ 118 (454)
.|+++.+...+..+++.+|++.+..... ....|..+.+..+...+.....++-+++.-++. +.-...++.++.+|+..
T Consensus 7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~-~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 85 (445)
T 3l1l_A 7 AHKVGLIPVTLMVSGAIMGSGVFLLPAN-LASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFL 85 (445)
T ss_dssp CCCBCHHHHHHHHHHHHCSSHHHHHHHH-HHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHH
T ss_pred CCcccHHHHHHHHHHhHHhhhHHhhHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChH
Confidence 4889999999999999999888876444 445565544322223333444455566665555 33478999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCC-Cc-hh--hhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHH
Q psy14002 119 GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAI-SN-AQ--PYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLL 194 (454)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi-~~-~~--~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~ 194 (454)
..+.+....+......+.+..+.+..+ +..++. +. +. .+.+...+...+ ....|.|...+.+.+-. .
T Consensus 86 g~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--in~~g~~~~~~~~~~~~--~ 156 (445)
T 3l1l_A 86 GYQTNVLYWLACWIGNIAMVVIGVGYL-----SYFFPILKDPWVLTITCVVVLWIFVL--LNIVGPKMITRVQAVAT--V 156 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTTCGGGGSHHHHHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCccccccHHHHHHHHHHHHHHHH--HHHhchHHHHHHHHHHH--H
Confidence 877777777666655666666767666 555442 11 11 122222333344 66678887777766552 2
Q ss_pred HHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCc---hhhHHHHHHHHHHhhhcchhHHHHHhccCCH-
Q psy14002 195 LAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKD---YGLWIEGMLLLAFGGIPWQSYFQRVLSLRST- 270 (454)
Q Consensus 195 il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~- 270 (454)
+.++. +++. ......+. +.+. +.+++++.+ ...+........+++........-.-..||+
T Consensus 157 ~~i~~-~~~~--~i~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~ 221 (445)
T 3l1l_A 157 LALIP-IVGI--AVFGWFWF--RGET----------YMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK 221 (445)
T ss_dssp HHHHH-HHHH--HHTTSTTC--CCCC----------CCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH
T ss_pred HHHHH-HHHH--HHHHHHHh--Chhh----------cccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc
Confidence 33333 2211 11111110 0010 001111111 1112222222334444444444555567886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhh
Q psy14002 271 KAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSA 350 (454)
Q Consensus 271 ~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ 350 (454)
|+..|+...+......+++...+ ......|.. +..+.+..+....++..+++...++..+.+.+..++.
T Consensus 222 r~ip~a~~~~~~~~~~~y~~~~~---~~~~~~~~~--------~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 290 (445)
T 3l1l_A 222 RNVPIATIGGVLIAAVCYVLSTT---AIMGMIPNA--------ALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSL 290 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHSCTT--------TSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTH
T ss_pred ccccHHHHHHHHHHHHHHHHHHH---HHHhcCCHH--------HHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 77899998887776666554332 222233431 1223445566777787888888888888888889999
Q ss_pred hhHHHhhhh---hhhHHHHH-hhcCC-CCCCC-eehhHHHHHHHHHHHhc
Q psy14002 351 DAGILSSSS---MFTRNIYK-LSFRP-KLTPN-WVAFFGLGAVTAAVMSS 394 (454)
Q Consensus 351 ds~l~a~ss---~l~~Di~~-~~~~~-~~s~~-Ri~~~~i~i~a~~la~~ 394 (454)
.+.+.+.+- .+++|=.. +.+.+ |..+. +..+++.++++..+.+.
T Consensus 291 ~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 340 (445)
T 3l1l_A 291 GGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLS 340 (445)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 888888776 34455222 22222 21111 44555566656555543
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.58 E-value=2.3e-05 Score=79.97 Aligned_cols=321 Identities=10% Similarity=-0.064 Sum_probs=162.3
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhhcc-CccCchHHHHHhhcCc
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMREA-SYVTMLDPFQQAYGNR 117 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r~~-~~~T~~d~l~~Ryg~~ 117 (454)
.|+++.+-..+..+++.+|++.+..........|....+ +.++. +.....++-+++.-++. +.-...++.++.+|++
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~-~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~ 83 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSG-IYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDN 83 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHH-HHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSS
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcc
Confidence 588999999888888888887776654444444553332 22332 33333445556555554 3346889999999997
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCCCch--h--hhhhhhhhhhhhhchhcchhhHHHHHHHHHHH
Q psy14002 118 I-GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNA--Q--PYLKEPNMTIFSKIDWLGTVETKDYGLWIEGM 192 (454)
Q Consensus 118 ~-~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~~--~--~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~ 192 (454)
. ....+....+......+.+..+.+..+ +..++.+.. . .+.+...+...+ ....|.|.....+.+-.
T Consensus 84 ~~~g~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--in~~g~~~~~~~~~~~~- 155 (444)
T 3gia_A 84 IITGALSILLWMSYVISIALFAKGFAGYF-----LPLINAPINTFNIAITEIGIVAFFTA--LNFFGSKAVGRAEFFIV- 155 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHTTCCCCHHHHHHHHHHHHHHHHH--HHHHTHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCchHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHH-
Confidence 3 222234444444455666667777666 555554321 1 112222333334 55667777766665552
Q ss_pred HHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCH-H
Q psy14002 193 LLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRST-K 271 (454)
Q Consensus 193 ~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~-~ 271 (454)
.+.++. +++. +...... .+.+ ++.+...+.++..++.......+++........-.-..||+ |
T Consensus 156 -~~~i~~-~~~~--ii~~~~~--~~~~----------~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r 219 (444)
T 3gia_A 156 -LVKLLI-LGLF--IFAGLIT--IHPS----------YVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKK 219 (444)
T ss_dssp -HHHHHH-HHHH--HHHHHHH--CCGG----------GTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH
T ss_pred -HHHHHH-HHHH--HHHHHHH--cChh----------hcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc
Confidence 233333 2111 1111111 0111 11111122221112111111112222233333444467886 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhh
Q psy14002 272 AAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSAD 351 (454)
Q Consensus 272 ~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~d 351 (454)
+.+|+...+......+++...+ ......|.. .-..+.+..+.....+..+++...++.++.+.+..++..
T Consensus 220 ~ip~ai~~~~~~~~~~y~~~~~---~~~~~~~~~-------~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~ 289 (444)
T 3gia_A 220 NVPRAIFISILIVMFVYVGVAI---SAIGNLPID-------ELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMN 289 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHTTSCHH-------HHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHH---HHHhCCCHH-------HHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6889988887776665544332 111222320 001123445555666667777777777777888888888
Q ss_pred hHHHhhhhhh---hHHHHHh-hcCCCCCCC--eehhHHHHHHHHHHHhcCC
Q psy14002 352 AGILSSSSMF---TRNIYKL-SFRPKLTPN--WVAFFGLGAVTAAVMSSAD 396 (454)
Q Consensus 352 s~l~a~ss~l---~~Di~~~-~~~~~~s~~--Ri~~~~i~i~a~~la~~~~ 396 (454)
+.+.+.+-.+ ++|=+.| .+.+ .+.+ ...+++.++++..+....+
T Consensus 290 ~~~~~~sR~l~a~a~dg~lP~~f~~-~~~~~P~~a~~~~~~~~~~~~~~~~ 339 (444)
T 3gia_A 290 ATIYGGANVAYSLAKDGELPEFFER-KVWFKSTEGLYITSALGVLFALLFN 339 (444)
T ss_dssp HHHTTTHHHHHHHHHHSSCCSSCCT-TSCCSCTHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHhC-CCCCCCcHHHHHHHHHHHHHHHHcC
Confidence 8887765543 4553322 2222 1222 4455666666666665544
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.32 E-value=0.055 Score=55.75 Aligned_cols=297 Identities=9% Similarity=-0.034 Sum_probs=131.7
Q ss_pred CcccChHHHHHHHHHHhhccccccccchHHHhcchhHHH-HHHHHHHHHHHHHHHHhhhhh--ccCccCchHHHHHhhcC
Q psy14002 40 GRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQ-VPLGYSLALVVGALLFVKPMR--EASYVTMLDPFQQAYGN 116 (454)
Q Consensus 40 grsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~-~~~~~~l~~~~~~~~~~~~~r--~~~~~T~~d~l~~Ryg~ 116 (454)
.|+++.+-..+-.+++.+| ..+.+. ....|..... +.++..+..+..++-+++.-+ +...-...++.++-+|+
T Consensus 10 ~r~l~~~~~~~l~~~~~ig---~~~~~~-~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P~GG~y~~~~~~~g~ 85 (511)
T 4djk_A 10 AKQLTLLGFFAITASMVMA---VYEYPT-FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGP 85 (511)
T ss_dssp --CCCHHHHHHHTGGGGCC---GGGHHH-HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC---CHHHHHHHHHCH
T ss_pred CccccHHHHHHHHHHHHHh---hchhHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCChhhhHHhhcCc
Confidence 4888888877776666554 333343 2345554432 223322222223445555555 44445678888998999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhHhhhcccccccc---CC--Cchhhhhhh--hhhhhhhhchhcchhhHHHHHHHH
Q psy14002 117 RIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPF---AI--SNAQPYLKE--PNMTIFSKIDWLGTVETKDYGLWI 189 (454)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~---gi--~~~~~i~i~--~~v~~~Y~~t~~GGl~av~~TD~i 189 (454)
+.+.+......+..+.+.+....+.+..+ +..+ ++ +.+...++. ..+.... ...-|.|...+.+.+
T Consensus 86 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--in~~g~~~~~~~~~~ 158 (511)
T 4djk_A 86 RWGFAAISFGYLQIAIGFIPMLYFVLGAL-----SYILKWPALNEDPITKTIAALIILWALAL--TQFGGTKYTARIAKV 158 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----HTTTTCGGGTSCSSHHHHHHHHHHHHHHH--HHHTCSSSHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhcCcccccCcHHHHHHHHHHHHHHHH--HHHhChHHHHHHHHH
Confidence 88777777776666666666666555555 3332 11 112122222 2222223 444566655554433
Q ss_pred HHHHHHHHHHH-HHHhhhhhhheeccCCCcchhHhhhhhcCccCCCCCCCchhhHHHHHHHHHHhhhcchhHHHHHhccC
Q psy14002 190 EGMLLLAFGGI-PWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLR 268 (454)
Q Consensus 190 Q~~~~il~~~~-~ii~~~~~~~~~~~~gg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aak 268 (454)
-.. +.+++.+ .++. +.+.... .++..+.... ..++.++.+..+..... ....+++........-.=..|
T Consensus 159 ~~~-~~~~~~~~~~i~--~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~a~~G~e~~~~~a~E~k 228 (511)
T 4djk_A 159 GFF-AGILLPAFILIA--LAAIYLH-SGAPVAIEMD---SKTFFPDFSKVGTLVVF---VAFILSYMGVEASATHVNEMS 228 (511)
T ss_dssp HHH-HTTHHHHHHHHH--HHHHHTC----------------CCCCCTTSTTTTTTH---HHHHHHHTTGGGGTGGGSSSS
T ss_pred HHH-HHHHHHHHHHHH--HHHHHHh-cCCcccccCc---ccccCCCcccchHHHHH---HHHHHHHhhHHHHHHHHHhcc
Confidence 211 1011110 1111 1111111 1211111101 01222222211111111 112233333333333444567
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCc---hHHHHHHHHHHHH
Q psy14002 269 ST-KAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTP---NWVAFFGLGAVTA 344 (454)
Q Consensus 269 s~-~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp---~~l~gl~~~~~la 344 (454)
|+ |+..|+...+......+++...+ ......|+. + ....++.......+.+..+ +++..++.+.++.
T Consensus 229 ~P~k~ip~ai~~~~~~~~~~y~~~~~---~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 299 (511)
T 4djk_A 229 NPGRDYPLAMLLLMVAAICLSSVGGL---SIAMVIPGN-----E-INLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLL 299 (511)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHH---HHHTTSCTT-----S-CCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHH---HHHeecCHh-----h-ccccchHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 64 67889988887776666554332 122233431 0 1111111111112223333 6777777777777
Q ss_pred HHHhhhhhHHHhhhhh---hhHHHH
Q psy14002 345 AVMSSADAGILSSSSM---FTRNIY 366 (454)
Q Consensus 345 A~mST~ds~l~a~ss~---l~~Di~ 366 (454)
+.+++..+.+.+.+-. +++|=.
T Consensus 300 ~~~~~~~~~~~~~sR~l~a~ardg~ 324 (511)
T 4djk_A 300 GVLAEIASWIVGPSRGMYVTAQKNL 324 (511)
T ss_dssp HHHHHHHHHTTHHHHHTCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCc
Confidence 8888877777766654 345533
No 7
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=97.21 E-value=0.061 Score=55.53 Aligned_cols=103 Identities=8% Similarity=-0.120 Sum_probs=56.1
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCccCccchHHHHHHHhCch--HHHH
Q psy14002 259 SYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPN--WVAF 336 (454)
Q Consensus 259 ~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~~~~~~~~p~l~~~~lp~--~l~g 336 (454)
.+.-|+-.-|+.||--.+.++.+.+...+.+ ...|-.+..+.-+......+..+..+++.++..+. +.+|- .+..
T Consensus 338 ~FIARISrGRTIREfi~gvl~vPs~~~~~Wf--svfGg~ai~~~~~g~~~l~~~~~~~~~~~alf~~l-~~lP~~~i~~~ 414 (509)
T 2wsw_A 338 IFLARISKGRTVRELCLGMVSGLTAGTWLIW--TILGGNTLQLIDQNILNIPQLIDQYGVPRAIIETW-AALPLSTATMW 414 (509)
T ss_dssp HHHHHTTTTCBHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTSCCHHHHHHHHCHHHHHHHHH-HTSSSHHHHHH
T ss_pred HHhheecCCcCHHHHHHHHHHHHHHHHHHhH--HHHhHHHHHHHHhCCccHHHHHhccChhhHHHHHH-HHCChHHHHHH
Confidence 5678888888888876666555544332222 22354444331110000000001123445555555 44563 4445
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhhhhhHH
Q psy14002 337 FGLGAVTAAVMSSADAGILSSSSMFTRN 364 (454)
Q Consensus 337 l~~~~~laA~mST~ds~l~a~ss~l~~D 364 (454)
+.+..++.-...|+||....+++.-+++
T Consensus 415 l~iil~~~FfvTSaDS~s~vi~~~ss~g 442 (509)
T 2wsw_A 415 GFFILCFIATVTLINACSYTLAMSTCRS 442 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBCC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHcCC
Confidence 5555566668899999999988887765
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=95.92 E-value=0.082 Score=54.88 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=66.6
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCc-cCccCccchHHHHHHHhCc--hHHH
Q psy14002 259 SYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKN-FTAAESNSVLPLVLKELTP--NWVA 335 (454)
Q Consensus 259 ~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~-~~~~~~~~~~p~l~~~~lp--~~l~ 335 (454)
.+.-|+---|+.||--.+.++.+.+...+.+ ...|-.+..+.-+ +.+ ....+++.++..+.. .+| ..+.
T Consensus 343 ~FIARISrGRTIREfv~gvl~vPsl~~~~Wf--svfGg~ai~~~~~-----g~~~~~~~~~~~alf~~l~-~lP~~~i~~ 414 (539)
T 4ain_A 343 MFLARISRGRSIREFILGVLLVPAGVSTVWF--SIFGGTAIVFEQN-----GESIWGDGAAEEQLFGLLH-ALPGGQIMG 414 (539)
T ss_dssp HHHHHTTTTCBHHHHHHTTTHHHHHHHHHHH--HHHHHHHHHHHHT-----TCCCCTTSCHHHHHHHHHH-TSTTHHHHH
T ss_pred HHhhhccCCcCHHHHHHHHHHHHHHHHHHHH--HHhCHHHHHHHHh-----ccchhhcCCHhhHHHHHHH-HCchHHHHH
Confidence 5678998888888877666655544333222 2234444432111 111 112344556666654 455 3344
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC-ee-hhHHHHHHHHHHHhc
Q psy14002 336 FFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN-WV-AFFGLGAVTAAVMSS 394 (454)
Q Consensus 336 gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~-Ri-~~~~i~i~a~~la~~ 394 (454)
.+.+..++.-...|+||....+++.-+++ ++|++.+ |+ .-+..++++..+-+.
T Consensus 415 ~l~iili~~FfvTSaDS~s~vl~~~ss~g------~~~p~~~~rifWgv~~g~va~~LL~~ 469 (539)
T 4ain_A 415 IIAMILLGTFFITSADSASTVMGTMSQHG------QLEANKWVTAAWGVATAAIGLTLLLS 469 (539)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHTTT------CSSCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHcCC------CCCCCcchhhHHHHHHHHHHHHHHHh
Confidence 44455555557789999999988887653 2222222 55 345566666555444
No 9
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=61.84 E-value=1.5e+02 Score=30.45 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=30.9
Q ss_pred hHHHHHHHh-CchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHH
Q psy14002 321 VLPLVLKEL-TPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRN 364 (454)
Q Consensus 321 ~~p~l~~~~-lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~D 364 (454)
++|....+. .|+....++...++-|.++|.-+.+-...+.+.++
T Consensus 326 ~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~ 370 (519)
T 2a65_A 326 TLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDE 370 (519)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 446555443 34566777777888888888888888888877443
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=11.42 E-value=2.3e+02 Score=18.70 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhcccC
Q psy14002 13 FYTLVLAIGVWAGTKQK 29 (454)
Q Consensus 13 y~~~~l~ig~~~~r~~~ 29 (454)
.+++.+.+++|.+||+.
T Consensus 24 ~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 24 VVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhheehhhh
Confidence 33345566777776654
Done!