Query psy14002
Match_columns 454
No_of_seqs 146 out of 1637
Neff 7.9
Searched_HMMs 13730
Date Fri Aug 16 17:02:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14002.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14002hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 51.4 97 0.007 28.9 21.7 43 321-364 322-365 (509)
2 d2v4ja2 d.58.36.2 (A:2-167) Di 8.6 48 0.0035 26.4 0.8 13 442-454 83-100 (166)
3 d1r5ba2 b.44.1.1 (A:555-622) E 4.8 91 0.0066 20.6 0.5 9 446-454 25-33 (68)
4 d2axti1 f.23.37.1 (I:1-35) Pho 4.4 3.5E+02 0.025 15.2 3.3 21 9-29 10-30 (35)
5 d1af7a1 a.58.1.1 (A:11-91) Che 4.3 1.4E+02 0.01 19.9 1.3 25 93-117 43-67 (81)
6 d1lghb_ f.3.1.1 (B:) Light-har 2.7 1.3E+02 0.0097 18.1 -0.3 10 441-450 2-11 (43)
7 d1rc2a_ f.19.1.1 (A:) Aquapori 2.4 6.3E+02 0.046 19.8 4.0 51 79-140 39-91 (231)
8 d1ppjd2 f.23.11.1 (D:196-241) 2.3 4.8E+02 0.035 15.6 2.2 18 11-28 14-31 (46)
9 d1szpa1 a.60.4.1 (A:81-144) DN 2.3 3.4E+02 0.025 17.3 1.5 18 94-111 15-32 (64)
10 d3c7ba2 d.58.36.2 (A:1-166) Di 2.3 1.8E+02 0.013 22.8 -0.1 8 447-454 91-98 (166)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=51.40 E-value=97 Score=28.94 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=31.5
Q ss_pred hHHHHHHHh-CchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHH
Q psy14002 321 VLPLVLKEL-TPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRN 364 (454)
Q Consensus 321 ~~p~l~~~~-lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~D 364 (454)
++|....+. .|+....++...++.+.+++.-+.+-...+.+ +|
T Consensus 322 ~~P~~fs~~~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l-~d 365 (509)
T d2a65a1 322 TLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFL-ED 365 (509)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred hhHHHhhcCCcchhHHHHHHHHHHHHHHHHHhccccchhHHH-HH
Confidence 456555443 45667778888888888999888888888877 44
No 2
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=8.58 E-value=48 Score=26.45 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=9.6
Q ss_pred ccCcc-----ccccccCC
Q psy14002 442 MSGLP-----DEHAHTIR 454 (454)
Q Consensus 442 ~s~~~-----~~~~~~~~ 454 (454)
-|.+| +.|.||+|
T Consensus 83 Ysd~pe~fP~v~~FHT~R 100 (166)
T d2v4ja2 83 YCDQPEKFPGVAHFHTVR 100 (166)
T ss_dssp BBSSTTTCGGGSBCCEEE
T ss_pred CCCCccccCCcccccccc
Confidence 46666 78889886
No 3
>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=4.80 E-value=91 Score=20.58 Aligned_cols=9 Identities=33% Similarity=0.110 Sum_probs=6.7
Q ss_pred cccccccCC
Q psy14002 446 PDEHAHTIR 454 (454)
Q Consensus 446 ~~~~~~~~~ 454 (454)
|..|.||+|
T Consensus 25 ~vlH~ht~~ 33 (68)
T d1r5ba2 25 CVMHIHTAV 33 (68)
T ss_dssp BEEESSSCC
T ss_pred EEEEeeeeE
Confidence 577888875
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.37 E-value=3.5e+02 Score=15.18 Aligned_cols=21 Identities=19% Similarity=0.599 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhcccC
Q psy14002 9 GIIIFYTLVLAIGVWAGTKQK 29 (454)
Q Consensus 9 i~~~y~~~~l~ig~~~~r~~~ 29 (454)
++++|++.++..|+.+.--.|
T Consensus 10 ~vV~fFv~lFiFGFLSnDP~R 30 (35)
T d2axti1 10 IVVTFFVLLFVFGFLSGDPAR 30 (35)
T ss_dssp HHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHHHHHHHHHhhccCCCCC
Confidence 446677778888988764443
No 5
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.26 E-value=1.4e+02 Score=19.93 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=20.1
Q ss_pred HHhhhhhccCccCchHHHHHhhcCc
Q psy14002 93 LFVKPMREASYVTMLDPFQQAYGNR 117 (454)
Q Consensus 93 ~~~~~~r~~~~~T~~d~l~~Ryg~~ 117 (454)
-+.|++|+.|..|+.||++.--.++
T Consensus 43 RL~~rm~~~g~~s~~~Y~~~L~~~~ 67 (81)
T d1af7a1 43 RLVRRLRALGLDDFGRYLSMLEANQ 67 (81)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 4677888899999999998766554
No 6
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=2.65 E-value=1.3e+02 Score=18.13 Aligned_cols=10 Identities=50% Similarity=0.833 Sum_probs=7.2
Q ss_pred hccCcccccc
Q psy14002 441 QMSGLPDEHA 450 (454)
Q Consensus 441 ~~s~~~~~~~ 450 (454)
+||||.++.|
T Consensus 2 S~sGLT~~EA 11 (43)
T d1lghb_ 2 SLSGLTEEEA 11 (43)
T ss_dssp CSSSCCHHHH
T ss_pred CCCcCCHHHH
Confidence 5889986644
No 7
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=2.44 E-value=6.3e+02 Score=19.84 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc--cCccCchHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHh
Q psy14002 79 VPLGYSLALVVGALLFVKPMRE--ASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSS 140 (454)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~~r~--~~~~T~~d~l~~Ryg~~~~~~~~~~~~~~~~~~~~~ql~~ 140 (454)
..+++.++..+..+.+.+..-- +-+.|+..++.+|..-+. .+.|+.+|+.|
T Consensus 39 ia~~~Gl~v~~~i~~~g~iSGaH~NPAVTla~~~~g~~~~~~-----------~~~Yi~aQ~lG 91 (231)
T d1rc2a_ 39 VALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKE-----------VVGYVIAQVVG 91 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTCSCTTT-----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCccCCCchhHHHHhcCCCcHHH-----------HHHHHHHHHHH
Confidence 3455555554444455554322 367888888877665443 23466666664
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.33 E-value=4.8e+02 Score=15.56 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhccc
Q psy14002 11 IIFYTLVLAIGVWAGTKQ 28 (454)
Q Consensus 11 ~~y~~~~l~ig~~~~r~~ 28 (454)
++++.++.++.+|..|+.
T Consensus 14 ~~~l~~l~~l~yy~KR~~ 31 (46)
T d1ppjd2 14 LLMMGLLLPLVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455556666666543
No 9
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.29 E-value=3.4e+02 Score=17.29 Aligned_cols=18 Identities=28% Similarity=0.095 Sum_probs=13.5
Q ss_pred HhhhhhccCccCchHHHH
Q psy14002 94 FVKPMREASYVTMLDPFQ 111 (454)
Q Consensus 94 ~~~~~r~~~~~T~~d~l~ 111 (454)
-++++|+.|+.|+.++..
T Consensus 15 ~~~kL~~aG~~Tve~ia~ 32 (64)
T d1szpa1 15 DVKKLRESGLHTAEAVAY 32 (64)
T ss_dssp HHHHHHTTSCCSHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHh
Confidence 356788888888887754
No 10
>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.25 E-value=1.8e+02 Score=22.84 Aligned_cols=8 Identities=63% Similarity=0.837 Sum_probs=5.8
Q ss_pred ccccccCC
Q psy14002 447 DEHAHTIR 454 (454)
Q Consensus 447 ~~~~~~~~ 454 (454)
+.|.||+|
T Consensus 91 v~hFHT~R 98 (166)
T d3c7ba2 91 VEHFHTMR 98 (166)
T ss_dssp GSBCEEEE
T ss_pred cccccccc
Confidence 45888876
Done!