RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14002
(454 letters)
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline
cotransporter CHT and related proteins; solute-binding
domain. Na+/choline co-transport by CHT is Cl-
dependent. Human CHT (also called CHT1) is encoded by
the SLC5A7 gene, and is expressed in the central nervous
system. hCHT1-mediated choline uptake may be the
rate-limiting step in acetylcholine synthesis, and
essential for cholinergic transmission. Changes in this
choline uptake in cortical neurons may contribute to
Alzheimer's dementia. This subfamily belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 464
Score = 310 bits (798), Expect = e-101
Identities = 138/411 (33%), Positives = 201/411 (48%), Gaps = 64/411 (15%)
Query: 7 LAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATA 66
L GII++Y L+L IG+WA + KN E+ ++AGR++ L VG TL ATW GG I A
Sbjct: 1 LIGIILYYLLILGIGLWASRRVKN--SEDFLVAGRSLPLPVGTFTLFATWFGGETILGAA 58
Query: 67 EALFTTGLVW-CQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLP 125
E + GL Q P GY+L L++G L F KPMR +T+ D F+Q YG R+ LL +P
Sbjct: 59 ETFYEEGLGGVAQDPFGYALCLILGGLFFAKPMRRMGLLTLGDFFRQRYGRRVEVLLSIP 118
Query: 126 ALCGDVFWIASVLSSLGSVVDTL---------CLSFPFAISNAQPYLKEPNMTIFSKIDW 176
A+ + W+A+ L +LG V+ + +S + T+F
Sbjct: 119 AVPSYLGWVAAQLVALGLVLSVILGLPVTLGILISAAIVLI----------YTLFG---- 164
Query: 177 LGTVETKDYGLW------IEGMLLLAFGGIPWQCLSFPFAISNA---QPYLKEPNMTIFS 227
G+W + ++++ G + L PF ++N F
Sbjct: 165 ---------GMWSVAYTDVVQLIVIFIGLL----LLVPFVLTNPGGVDASAAAAGKLRF- 210
Query: 228 KVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSM 287
WLGT D+ +WI+ L L G IP Q FQRVLS +S K A LS L+
Sbjct: 211 -FPWLGTKP-SDWLIWIDAWLTLGLGSIPQQDVFQRVLSAKSEKTAQRLSLLAGFGYLLF 268
Query: 288 AIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVM 347
AIP G+ A +D ++ ++ +LP++L+ LTP WV LGA+ +A+M
Sbjct: 269 AIPPLLIGLAAASIDPDLTSYGLED----DAQLILPILLQYLTPLWVQVLFLGALLSAIM 324
Query: 348 SSADAGILSSSSMFTRNIYKLSFRPKLTP---NWVA-----FFGLGAVTAA 390
S+AD+ +L+ SS+F+ NIYK FRPK + WV FG A A
Sbjct: 325 STADSALLAPSSVFSENIYKP-FRPKASDRELLWVMRISVVVFGAIATLLA 374
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 129 bits (327), Expect = 4e-33
Identities = 101/418 (24%), Positives = 176/418 (42%), Gaps = 52/418 (12%)
Query: 7 LAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATA 66
L +I++ ++L IG+++ K K+ E+ LAGR++G FV LTL AT + G A
Sbjct: 3 LIIVIVYLLILLGIGLYSRKKVKS--SEDYFLAGRSLGPFVLALTLAATNISAGSFVGVA 60
Query: 67 EALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLD-PFQQAYGNRIGGLLFLP 125
+T G+ +G +L L++ AL F +R T+ + ++ Y + L +
Sbjct: 61 GLAYTYGISAGWYVIGAALGLLLLALFFAPRLRRLGVKTIPETLLERYYSKGVRILSAII 120
Query: 126 ALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKI----DWLGTVE 181
+ + ++A+ L G ++ TL L P+ I + I G
Sbjct: 121 IIIFLIGYLAAQLIGGGIILSTL-LGIPYWTG----------AIILAVIVILYTVFG--- 166
Query: 182 TKDYGLW-------IEGMLLLAFGGIPWQCLSFPFAISNAQPY-LKEPNMTIFSKVDWLG 233
GL I+G+L+L + FA+S L + + + LG
Sbjct: 167 ----GLRAVAWTDVIQGVLMLIGVIL-----LAFFALSKVGGGGLSALAAALPALLLSLG 217
Query: 234 TVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGA 293
+G + LL FG + QR L+ + K A L+ LL + A
Sbjct: 218 PGGGPGWGTILGLFLLGGFGVLANPQIVQRFLAAKDEKTARRGLLLAGLLILLIGFLAAL 277
Query: 294 FGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAG 353
G+ AR + + LP +++EL P +A L + AA+MS+AD+
Sbjct: 278 IGLAARALFPD---------LEGNPDLALPTLIQELLPPGLAGLVLAGLLAAIMSTADSL 328
Query: 354 ILSSSSMFTRNIYKLSFRPKLTPNWVAFFG-----LGAVTAAVMSSADAGILSSSSMF 406
+L++S++FTR+IYK PK + + G + V A +++ I+ S+
Sbjct: 329 LLAASTLFTRDIYKRLINPKASDKKLLRVGRIATVVVGVLALLLALFPPSIILLLSLA 386
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only].
Length = 493
Score = 108 bits (273), Expect = 1e-25
Identities = 87/402 (21%), Positives = 143/402 (35%), Gaps = 43/402 (10%)
Query: 6 GLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINAT 65
L +I+ L+L IG++A K K+ E+ L GR++G FV L+ A+ G
Sbjct: 5 LLIIFLIYLILMLLIGLYAYRKTKSL--EDYFLGGRSLGPFVYALSAAASDTSGWTFLGL 62
Query: 66 AEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREAS----YVTMLDPFQQAYGNRIGGL 121
+ +GL + +G + + LLF +R + T+ D + +G++I +
Sbjct: 63 PGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRI 122
Query: 122 LF-LPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTI-------FSK 173
L L + + +IA L + G + LS F IS L +
Sbjct: 123 LSALIIIVFFIPYIALQLVAGGLL-----LSLLFGISYVTGILIGALIVALYTFLGGLRA 177
Query: 174 IDWLGTVETKDYGLWIEGM------LLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFS 227
+ W ++ + + + +L+ FGG FA+ + P
Sbjct: 178 VVWTDFIQG---LIMLIALIVIPILVLILFGGF-----GELFAVLAS----LAPLFLTHP 225
Query: 228 KVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSM 287
L + W L + K+A L L C
Sbjct: 226 FDGALSPIYIISLIAWGTLFLGYFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLG 285
Query: 288 AIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVM 347
A G GI + V P ++ L P W+A L A+ AAVM
Sbjct: 286 AFLLGLLGIAYF------PLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAILAAVM 339
Query: 348 SSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTA 389
S+A + +L +SS TR+IYK R + + G V
Sbjct: 340 STASSQLLVASSAITRDIYKRFLRKNASEKELVRIGRVVVLV 381
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family. The Solute:Sodium
Symporter (SSS) Family (TC 2.A.21) Members of the SSS
family catalyze solute:Na+ symport. The solutes
transported may be sugars, amino acids, nucleosides,
inositols, vitamins, urea or anions, depending on the
system. Members of the SSS family have been identified
in bacteria, archaea and animals, and all functionally
well characterized members catalyze solute uptake via
Na+ symport. Proteins of the SSS generally share a core
of 13 TMSs, but different members of the family may have
different numbers of TMSs. A 13 TMS topology with a
periplasmic N-terminus and a cytoplasmic C-terminus has
been experimentally determined for the proline:Na+
symporter, PutP, of E. coli [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 407
Score = 75.0 bits (185), Expect = 1e-14
Identities = 84/390 (21%), Positives = 146/390 (37%), Gaps = 48/390 (12%)
Query: 39 AGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPM 98
AGR++G +V +L A+++ A++ G LG + L++ LFV
Sbjct: 1 AGRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIF 60
Query: 99 REASYVTMLDPFQQAYGNRIG-GLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAIS 157
TM + ++ +G RI GL L + +++ L S G+++ L +S
Sbjct: 61 INNGAYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFS-GALLIELITGLDLYLS 119
Query: 158 NAQPYLKEPNMTI-------FSKIDWLGTVETKD--YGLWIE-GMLLLAFGGIPWQCLSF 207
L +TI + W T++ G +I GG+ +F
Sbjct: 120 L----LLLGAITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAFSEVGGL----GTF 171
Query: 208 PFAISNAQPYLKEPN-------MTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSY 260
S A P P+ S + W G + G+ +A Q
Sbjct: 172 VEKASQAAPTNPSPDDLYDFFRDPSTSDLPW---------GAGVFGLPHVALWYWTNQVI 222
Query: 261 FQRVLSLRSTKAAYHLSTLSALLCFSMA-IPAGAFGIIARMVDWSAIPTYGKNFTAAESN 319
QR L+ +S K A L + + + A G+IAR + P S+
Sbjct: 223 VQRCLAAKSAKHA-KKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPA-LAGAVNQNSD 280
Query: 320 SVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN-- 377
PL+++EL P +A L A+ AAVMS+ + + S+S++FT ++YK
Sbjct: 281 QAYPLLVQELMPPGLAGLFLAAILAAVMSTLSSQLNSASTVFTMDLYK-KIIRPNASGEK 339
Query: 378 ------WVAFFGLGAVTAAVMSSADAGILS 401
+A + V ++ +L
Sbjct: 340 KIVMRGRIAVLVAAVIAGFVAAAQGGQVLQ 369
Score = 40.7 bits (96), Expect = 0.001
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 364 NIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRP 417
+ +L P +A L A+ AAVMS+ + + S+S++FT ++YK RP
Sbjct: 280 DQAYPLLVQELMPPGLAGLFLAAILAAVMSTLSSQLNSASTVFTMDLYKKIIRP 333
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family. Membership of this
family is supported by a significant blast score.
Length = 406
Score = 67.7 bits (166), Expect = 3e-12
Identities = 81/368 (22%), Positives = 130/368 (35%), Gaps = 29/368 (7%)
Query: 38 LAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKP 97
LAGR++ FV L+L A+++ A A +GL +G + + + LF
Sbjct: 3 LAGRSMTGFVNGLSLAASYMSAASFVGLAGAGAASGLAGGLYAIGALVGVWLLLWLFAPR 62
Query: 98 MREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAIS 157
+R TM D ++ +G + L++L AL +++ + + + L+
Sbjct: 63 LRNLGAYTMPDYLRKRFGGKR-ILVYLSALSLLLYFFTYMSVQIVGGARLIELALGLNYY 121
Query: 158 NAQPYLKEPNM--TIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQ 215
A L T F + +T L + G ++L F
Sbjct: 122 TAVLLLGALTAIYTFFGGFLAVSWTDTIQAVLMLFGTIILMI---------IVFHEVGGY 172
Query: 216 PYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLL----AFGGIPWQSYFQRVLSLRSTK 271
E MT L T + L L G QR L+ + K
Sbjct: 173 SSAVEKYMTADPNGVDLYTPDGLHILRDPLTGLSLWPGLVLGTTGLPHILQRCLAAKDAK 232
Query: 272 AAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAA-----ESNSVLPLVL 326
L F + +P G AI G N A SN P +
Sbjct: 233 CI-RCGVLILTPMFIIVMP-GMISRG-----LFAIALAGANPRACGTVVGCSNIAYPTLA 285
Query: 327 KELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGA 386
+L P +A L + AA+MS+ + +LSSSS FT ++YK + R K + G
Sbjct: 286 VKLGPPGLAGIMLAVMLAAIMSTLTSQLLSSSSAFTHDLYK-NIRRKASATEKELVGRSR 344
Query: 387 VTAAVMSS 394
+ V+ S
Sbjct: 345 IIVLVVIS 352
Score = 41.2 bits (97), Expect = 8e-04
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 373 KLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRP 417
KL P +A L + AA+MS+ + +LSSSS FT ++YK R
Sbjct: 287 KLGPPGLAGIMLAVMLAAIMSTLTSQLLSSSSAFTHDLYKNIRRK 331
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related
proteins; solute binding domain. Escherichia coli PutP
catalyzes the Na+-coupled uptake of proline with a
stoichiometry of 1:1. The putP gene is part of the put
operon; this operon in addition encodes a proline
dehydrogenase, allowing the use of proline as a source
of nitrogen and/or carbon. This subfamily also includes
the Bacillus subtilis Na+/proline cotransporter (OpuE)
which has an osmoprotective instead of catabolic role.
Expression of the opuE gene is under osmotic control and
different sigma factors contribute to its regulation; it
is also a putative CcpA-activated gene. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 464
Score = 67.1 bits (165), Expect = 6e-12
Identities = 81/403 (20%), Positives = 152/403 (37%), Gaps = 78/403 (19%)
Query: 7 LAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGG----GYI 62
L I++ L+L IG+++ K K + L GR++G +V L+ A+ + G G
Sbjct: 1 LITFIVYLLLMLGIGIYSYRKTKTL--SDYFLGGRSLGPWVTALSAGASDMSGWLLLGLP 58
Query: 63 NATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYV----TMLDPFQQAYGNR- 117
A + +GL + +G L + L K +R + T+ D + + ++
Sbjct: 59 GAA----YASGLSAIWIAIGLILGTYLNWLFVAKRLRRYTEKNDSITLPDYLENRFRDKS 114
Query: 118 -----IGGLLFLPALCGDVFWIASVLSSLGSVVDTLC-LSFPFAISNAQPYLKEPNMTIF 171
+ L+ L + A+ L + G + ++L + + +
Sbjct: 115 KLLRILSALIILIFF---TIYAAAQLVAGGKLFESLFGIDYSTGL--------------- 156
Query: 172 SKIDWLGTVETKDY----GLW-------IEGML-LLAFGGIPWQCLSF---PFAISNAQP 216
+G V Y G +G+L LLA +P L+ + A
Sbjct: 157 ----LIGAVVVVAYTFLGGFLAVSWTDFFQGLLMLLALVLLPIVALAALGGLSGLVTALA 212
Query: 217 YLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKA---A 273
+ ++ F LG + L I +L G R ++++ K A
Sbjct: 213 AIDPGLLSPFGGGLGLGGL------LAIISLLAWGLGYFGQPHILVRFMAIKDPKEIKKA 266
Query: 274 YHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNW 333
++ + +L A+ G G + + V P++ +EL P W
Sbjct: 267 RRIAMVWMILFLLGAVLVGLLGRA-----------LLPDLLLFDPELVFPVLAQELFPPW 315
Query: 334 VAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTP 376
+A L A+ AA+MS+AD+ +L SS T ++YK R + +
Sbjct: 316 LAGILLAAILAAIMSTADSQLLVCSSALTEDLYKAFLRKEASD 358
Score = 45.6 bits (109), Expect = 4e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 373 KLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVD 420
+L P W+A L A+ AA+MS+AD+ +L SS T ++YK R +
Sbjct: 310 ELFPPWLAGILLAAILAAIMSTADSQLLVCSSALTEDLYKAFLRKEAS 357
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and
related proteins; solute-binding domain. Dur3 is the
yeast plasma membrane urea transporter. Saccharomyces
cerevisiae DUR3 also transports polyamine. The polyamine
uptake of S. cerevisiae DUR3 is activated upon its
phosphorylation by polyamine transport protein kinase 2
(PTK2). S. cerevisiae DUR3 also appears to play a role
in regulating the cellular boron concentration. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 493
Score = 54.9 bits (133), Expect = 5e-08
Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 20/146 (13%)
Query: 258 QSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIP---AGAFGIIARMVDWSAIPTYGKNFT 314
Q Y+QR ++ + AA L L F AIP A G+ A + F
Sbjct: 258 QGYWQRAIAAKP-SAAVKGYFLGGLAWF--AIPFLLATFLGLAALALG------LNPTFE 308
Query: 315 AAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKL 374
+ VLP V L A L + AV S+A A +++ SS+ T +IY+ P
Sbjct: 309 EVSAGLVLPYVAAALLGKGGAAAVLILLFMAVTSTASAELIAVSSIVTYDIYRTYINPNA 368
Query: 375 TPNW--------VAFFGLGAVTAAVM 392
T V FGL AV
Sbjct: 369 TGKQLLRVSRIAVIGFGLFMGGLAVG 394
Score = 37.9 bits (89), Expect = 0.010
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 5 YGLA-GIIIFYTLVLAIGVWAGTK--QKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGY 61
YG+ G+ + L++ + K EE M AGR+VG + ++ ++W
Sbjct: 1 YGVVLGLGALFALLMVFITRLLKRYRGKKQSSEEFMTAGRSVGTGLTAASIVSSWTWAAT 60
Query: 62 INATAEALFTTGLVWCQVPLGYSLALVVGALLF 94
+ +A + G+ P Y+ + LLF
Sbjct: 61 LLQSATVAYQYGVS---GPFWYASGAALQILLF 90
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of
Escherichia coli and related proteins; solute binding
domain. PanF catalyzes the Na+-coupled uptake of
extracellular pantothenate for coenzyme A biosynthesis
in cells. This subfamily belongs to the solute carrier 5
(SLC5) transporter family.
Length = 472
Score = 48.7 bits (117), Expect = 3e-06
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 10 IIIFYTLVLAIGVWAGTKQKNHGE---EEVMLAGRNVGLFVGVLTLTATWVGGGYINATA 66
III+ ++L IG +A +K EE + GR++G FV +TL AT+
Sbjct: 5 IIIYLVILLGIGFYARRSKKRRSGDFLEEYFIGGRSMGGFVLAMTLVATYTSASSFIGGP 64
Query: 67 EALFTTGLVWC-----QVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGL 121
A + GL W QVP G+ L L V F R+ + VT++D + Y ++ L
Sbjct: 65 GAAYKIGLGWVLLAMIQVPTGF-LTLGVLGKKFAIIARKINAVTIIDYLRARYNSKA--L 121
Query: 122 LFLPALCGDVFWIASVLSSL 141
+ L +L VF+IA++++
Sbjct: 122 VVLSSLALIVFFIAAMVAQF 141
Score = 43.0 bits (102), Expect = 3e-04
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 316 AESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK 373
+ V+P + ++ P W+A L AA+MS+ D+ ++ +SS +++Y +
Sbjct: 299 EVPDKVIPTLALKVLPPWLAGLFLAGPLAAIMSTVDSQLILASSAIVKDLYLNYKNKE 356
Score = 40.3 bits (95), Expect = 0.002
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 373 KLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPD 424
K+ P W+A L AA+MS+ D+ ++ +SS +++Y + +
Sbjct: 311 KVLPPWLAGLFLAGPLAAIMSTVDSQLILASSAIVKDLYLNYKNKEKKTSEK 362
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 46.4 bits (111), Expect = 2e-05
Identities = 90/419 (21%), Positives = 148/419 (35%), Gaps = 53/419 (12%)
Query: 10 IIIFYTLV-LAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEA 68
+I Y L+ L IG++ +K+ + + L GRN+ ++ L++ AT A A
Sbjct: 5 VIALYFLLMLGIGLYF-SKRASKSTSDFFLGGRNLPWWLAGLSMFATTFSADTFVAVAGI 63
Query: 69 LFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALC 128
+T GLV + +++A ++GA F R VT + ++ YG R G L
Sbjct: 64 AYTYGLVGNWIWWLWAVAGLLGAFFFAPRWRRLRVVTDGELPEERYGGRFGA-----PLR 118
Query: 129 GDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPN----------MTIFSKIDWLG 178
W ++LS V + AI A + I+S I L
Sbjct: 119 QFYAWYFALLS----NVGIGAWLYLAAIKVAAVFGPWDITLTILILGLITLIYSVIGGLW 174
Query: 179 TVETKDYGLWIEGMLL-LAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVET 237
V D ++ M +A + + P + + P + G
Sbjct: 175 AVVVTDVVQFVILMAASIAVAVLALNAVGGPGGLWSQLP-----EGFFDFFLSLDGFTGF 229
Query: 238 KDYGLWIEGMLLLAFGGIPWQSYF-QRVLSLRSTKAAYHLSTLSALLCF-----SMAIPA 291
+I A Y QR LS +S KAA + L A L M
Sbjct: 230 GALFFFILWFGWYAGSASGGGWYDAQRYLSAKSEKAAKKAALLFAALYLVRPLPWMLPAL 289
Query: 292 GAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGL--GAVTAAVMSS 349
A + + D +A + + P ++KEL P GL + AA MS+
Sbjct: 290 AALVLYPDLADPAA--------ALIDFEAAYPAMIKELLP--AGLLGLVLAGLFAATMST 339
Query: 350 ADAGILSSSSMFTRNIYKLSFRPKLTPN---WVA-----FFGLGAVTAAVMSSADAGIL 400
+ ++ +IYK +P + V FGL ++ A+ S + G
Sbjct: 340 VSTHLNWGAAYLVNDIYKRFIKPDASEKELLRVGRLATVLFGLLSIVVALASDSIGGAF 398
>gnl|CDD|131174 TIGR02119, panF, sodium/pantothenate symporter. Pantothenate
(vitamin B5) is a precursor of coenzyme A and is made
from aspartate and 2-oxoisovalerate in most bacteria
with completed genome sequences. However, some pathogens
must import pantothenate. This model describes PanF, a
sodium/pantothenate symporter, from a larger family of
Sodium/substrate symporters (pfam00474). Several species
that have this transporter appear to lack all enzymes of
pantothenate biosynthesis, namely Haemophilus
influenzae, Pasteurella multocida, Fusobacterium
nucleatum, and Borrelia burgdorferi [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pantothenate
and coenzyme A, Transport and binding proteins, Other].
Length = 471
Score = 45.9 bits (109), Expect = 3e-05
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 10 IIIFYTLVLAIGVWAGTKQK--NHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAE 67
+II+ V I ++A + + + E L GR++G FV +TL AT+
Sbjct: 7 LIIYLVTVFLIAIYASKRVQSTDSFLNEYFLGGRSMGGFVLAMTLVATYGSASSFIGGPG 66
Query: 68 ALFTTGLVWC-----QVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLL 122
+ GL W QVP GY L V F R+ + +T+ D + Y N+ L+
Sbjct: 67 IAYNYGLGWVLLAMIQVPTGY-FVLGVLGKKFAIISRKYNAITINDVLKARYNNKF--LV 123
Query: 123 FLPALCGDVFWIASV 137
+L ++ VF+ +++
Sbjct: 124 WLSSISLLVFFFSAM 138
Score = 40.5 bits (95), Expect = 0.002
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 243 WIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVD 302
WI L+ G I R +S + +KA + + ++ + + G++ R V
Sbjct: 242 WI----LVGIGVIGLPQTAVRCMSYKDSKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAV- 296
Query: 303 WSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFT 362
IP + V+PL+ ++ P +A L A AA+MS+ ++ +L SSS
Sbjct: 297 ---IPDL------TVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSSTII 347
Query: 363 RNIYKLSFRPK 373
+++Y L++ PK
Sbjct: 348 KDLY-LNYIPK 357
Score = 33.5 bits (77), Expect = 0.22
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 373 KLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK 418
K+ P +A L A AA+MS+ ++ +L SSS +++Y L++ PK
Sbjct: 313 KVLPPILAGIFLAAPMAAIMSTVNSLLLQSSSTIIKDLY-LNYIPK 357
>gnl|CDD|212049 cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 454
Score = 45.3 bits (108), Expect = 4e-05
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 248 LLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIP 307
LL FG + Q +QRV + RS K A + L C + G+ AR++ +P
Sbjct: 227 LLYFFGILIGQDIWQRVFTARSEKVARWGGVAAGLYCVLYGLAGALIGMAARVL----LP 282
Query: 308 TYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYK 367
A ++ + +E+ P + L A AA+MS+A +L+SS++ T ++Y
Sbjct: 283 DL------ANPDNAFATMAQEVLPVGLRGLVLAAALAAMMSTASGALLASSTVLTNDVYP 336
Query: 368 LSFRP 372
Sbjct: 337 RFRAK 341
Score = 43.8 bits (104), Expect = 1e-04
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 9 GIIIFYTLV-LAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAE 67
G+I Y +AIG W + K E+ ++AGR +G + + T+ A +GG
Sbjct: 4 GVIALYFAAMIAIGWWGMRRAKTS--EDYLVAGRRLGPGLYLGTMAAVVLGGASTIGGVG 61
Query: 68 ALFTTGL--VWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGG 120
+ G+ +W +G L ++ LL K + T+ + + YG
Sbjct: 62 LGYQYGISGMWLVFMIG--LGIIALGLLLAKRIARLKVYTVSEVLELRYGPSARV 114
Score = 33.0 bits (76), Expect = 0.32
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 384 LGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRP 417
L A AA+MS+A +L+SS++ T ++Y
Sbjct: 308 LAAALAAMMSTASGALLASSTVLTNDVYPRFRAK 341
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional.
Length = 483
Score = 42.9 bits (102), Expect = 2e-04
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 10 IIIFYTLVLAIGVWAGTK-QKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEA 68
++I+ LV I V+A K Q E L R++G FV +TL AT++ A
Sbjct: 9 LVIYLVLVFGISVYAYRKRQAGDFLNEYFLGNRSMGGFVLAMTLIATYISASSFIGGPGA 68
Query: 69 LFTTGLVWC-----QVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLF 123
+ GL W QVP + L+L + F R+ + VT+ D + Y +R+ L++
Sbjct: 69 AYKYGLGWVLLAMIQVPTVW-LSLGILGKKFAILARKYNAVTLNDMLRARYQSRL--LVW 125
Query: 124 LPALCGDVFWIA 135
L +L VF+ A
Sbjct: 126 LASLSLLVFFFA 137
Score = 41.8 bits (99), Expect = 6e-04
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 321 VLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN 377
V+P ++ ++ P + A L A AA+MS+ D+ +L SSS +++Y L+ RP N
Sbjct: 307 VIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSSTIIKDLY-LNIRPDQIAN 362
Score = 37.9 bits (89), Expect = 0.009
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 373 KLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK 418
K+ P + A L A AA+MS+ D+ +L SSS +++Y L+ RP
Sbjct: 314 KVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSSTIIKDLY-LNIRPD 358
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 42.3 bits (100), Expect = 4e-04
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 262 QRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAF--GIIARMVDWSAIPTYGKNFTAAESN 319
QR L+ + AA + A M IP G+IA ++ +P G + + N
Sbjct: 258 QRALAAKDLSAAKRTPLIGAF--PKMFIPILVILPGLIALVL----VPELGAS--GLDYN 309
Query: 320 SVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRP 372
LP ++ + P + GL A+ AA MS + + +++FT +IY+ R
Sbjct: 310 QALPYLMAKYLPPGLLGLGLTALLAAFMSGMAGNVSAFNTVFTYDIYQTYIRK 362
Score = 31.1 bits (71), Expect = 1.4
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 373 KLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEH 426
K P + GL A+ AA MS + + +++FT +IY+ R D+H
Sbjct: 318 KYLPPGLLGLGLTALLAAFMSGMAGNVSAFNTVFTYDIYQTYIRKD---ASDKH 368
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism].
Length = 473
Score = 40.8 bits (96), Expect = 0.001
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 7 LAGIIIFYTLVLAIGVWAGTK-QKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINAT 65
+ +I + +V I ++A K K E L R++G V +T TAT++
Sbjct: 4 ILPLIGYLVVVFGIAIYAYRKRSKGSFLNEYYLGNRSMGGIVLAMTFTATYISASSFIGG 63
Query: 66 AEALFTTGLVWC-----QVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNR 117
A + GL W QVP + LAL V F RE + +T+ D Y +R
Sbjct: 64 PGAAYKYGLGWVLLAMIQVPTVW-LALGVLGKKFAILAREYNALTINDLLFARYQSR 119
Score = 38.9 bits (91), Expect = 0.004
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 19/117 (16%)
Query: 263 RVLSLRSTKAAYH---LSTLS-ALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAES 318
R ++ + +KA + + T+ A+L M + AGA G + IP
Sbjct: 257 RCIAFKDSKAIHRGMIIGTIVIAILMLGMHL-AGALG-------RAVIPDL------TVV 302
Query: 319 NSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLT 375
+ V+P + ++ P + A L A AA+MS+ ++ +L SSS +++Y L+ R KL
Sbjct: 303 DLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSSTLIKDLY-LNVRDKLK 358
Score = 33.1 bits (76), Expect = 0.28
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 373 KLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIY 411
K+ P + A L A AA+MS+ ++ +L SSS +++Y
Sbjct: 312 KVLPPFAAGIFLAAPMAAIMSTINSQLLQSSSTLIKDLY 350
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter. This family
consists of the sodium/proline symporter (proline
permease) from a number of Gram-negative and
Gram-positive bacteria and from the archaeal genus
Methanosarcina. Using the related pantothenate permease
as an outgroup, candidate sequences from Bifidobacterium
longum and several from archaea are found to be outside
the clade defined by known proline permeases. These
sequences, scoring between 570 and -40, define the range
between trusted and noise cutoff scores [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 487
Score = 40.0 bits (94), Expect = 0.002
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 313 FTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRP 372
F A S+ LP + + +W+ LGA+ + A + R +
Sbjct: 254 FMAIRSHKELPKA-RRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQ 312
Query: 373 KLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK 418
L W+A L A+ AA+MS+ + +L SSS T + YK F+ +
Sbjct: 313 ILFHPWIAGILLAAILAAIMSTISSQLLVSSSALTEDFYKAFFKRE 358
Score = 37.0 bits (86), Expect = 0.019
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 10 IIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEAL 69
++ ++L IG +A K N + +L GR++G FV L+ A+ + G + AL
Sbjct: 7 FGVYLIIMLLIGFYAYKKTTNL--SDYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGAL 64
Query: 70 FTTGL 74
+ TGL
Sbjct: 65 YVTGL 69
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 36.0 bits (84), Expect = 0.039
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 258 QSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGA-FGIIARMVDWSAIPTYGKNF--- 313
Q QR L+ +S K A S L +++P F I +A+ + +
Sbjct: 249 QDVVQRYLTTKSEKEA----RKSLWLNALLSLPVWLLFFFIG-----TALYVFYQQHPEL 299
Query: 314 --TAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFR 371
++V P + P VA + A+ AA MS+ + + S +++ T + YK +
Sbjct: 300 LDATINGDAVFPYFIVTQLPAGVAGLVIAAIFAAAMSTLSSSLNSIATVITTDFYK-RLK 358
Query: 372 PKLTP 376
P +
Sbjct: 359 PGRSD 363
>gnl|CDD|236699 PRK10484, PRK10484, putative transporter; Provisional.
Length = 523
Score = 35.6 bits (83), Expect = 0.050
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 258 QSYFQRVLSLRSTKAAYHLSTLSALL----CFSMAIPAGAFGIIARMVDWSAIPTYGKNF 313
QS QR L ++ + L+A + +P GIIA + YG
Sbjct: 261 QSIVQRALGAKNLAEGQKGALLAAFFKLLGPLILVLP----GIIAFHL-------YGDGL 309
Query: 314 TAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK 373
A + P ++ ++ P + F + A++S+ + + S+S++F+ +IYK P
Sbjct: 310 PNA--DMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLNSASTLFSLDIYKPIINPN 367
Query: 374 LTPNWVAFFG--LGAVTAAV 391
+ + G G V A +
Sbjct: 368 ASEKQLVKVGKKFGFVLAII 387
Score = 31.0 bits (71), Expect = 1.3
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 376 PNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVD 420
P + F + A++S+ + + S+S++F+ +IYK P
Sbjct: 325 PVPLVGFFAAVLFGAILSTFNGFLNSASTLFSLDIYKPIINPNAS 369
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 481
Score = 35.3 bits (82), Expect = 0.062
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 10 IIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGG-GYINATAEA 68
+I + +L G++ G KN +E+ L GR++ + L++ AT +++A +A
Sbjct: 6 LIGYLLGILVYGLYKGRGNKN--QEDYFLGGRSMPWWPIGLSVMATQASAITFLSAPGQA 63
Query: 69 LFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNR---IGGLLFL 124
+ G+ + Q G LA++ + FV T + ++ +G + + LFL
Sbjct: 64 -YLDGMRFVQFYFGLPLAMIFLCITFVPIFYRLKVYTAYEYLERRFGLKTRLLTSFLFL 121
Score = 31.4 bits (72), Expect = 0.91
Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 31/188 (16%)
Query: 237 TKDYGLW--IEGMLLLA---FGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPA 291
++ Y W + G L FG QS QR L+ +S A ++ LL F M
Sbjct: 223 SETYTFWSGLIGGFFLYLSYFGTD--QSQVQRYLTAKSIGEARKSLLMNGLLKFPMQF-- 278
Query: 292 GAFGIIARMV-------------DWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFG 338
+I ++ + + + N ++N + + P +
Sbjct: 279 -FILLIGVLLFVFYQFKPFPLSFNPAEVQRLDPNAETNDTNYIFLRFVLNYLPPGLVGLL 337
Query: 339 LGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRP--------KLTPNWVAFFGLGAVTAA 390
+ A+ AA MSS D+ + S +++ +IYK F+ K++ F+GL A+ A
Sbjct: 338 IAAIFAAAMSSIDSALNSLATVTVIDIYKRFFKKEASDEHYLKVSRLLTVFWGLLAIVFA 397
Query: 391 VMSSADAG 398
+ + G
Sbjct: 398 LFFAGSLG 405
Score = 29.1 bits (66), Expect = 4.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 384 LGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEH 426
+ A+ AA MSS D+ + S +++ +IYK F+ DEH
Sbjct: 338 IAAIFAAAMSSIDSALNSLATVTVIDIYKRFFKK---EASDEH 377
>gnl|CDD|185317 PRK15419, PRK15419, proline:sodium symporter PutP; Provisional.
Length = 502
Score = 35.0 bits (80), Expect = 0.076
Identities = 78/377 (20%), Positives = 145/377 (38%), Gaps = 41/377 (10%)
Query: 10 IIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEAL 69
+ IF +++ W TK ++ +L GR++G FV L+ A+ + G + A+
Sbjct: 13 VYIFGMILIGFIAWRSTKNF----DDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAV 68
Query: 70 FTTGLVWCQVPLGYSLAL-----VVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFL 124
F +G+ + +G +L +V L V + +T+ D F + ++ L +
Sbjct: 69 FLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRII 128
Query: 125 PALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTI-------FSKIDWL 177
AL +F+ ++ + G V F +S TI F + W
Sbjct: 129 SALVILLFF--TIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFLAVSWT 186
Query: 178 GTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEP---NMTIFSKVDWLGT 234
TV+ +++ A P + ++ +K+ N+ + ++++
Sbjct: 187 DTVQAS--------LMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAI 238
Query: 235 VETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAF 294
+ +GL FG + F S S A +S +LC + A+ G F
Sbjct: 239 ISLMGWGLGY-------FGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFF 291
Query: 295 GIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGI 354
GI + +N + V + + L W+A L A+ AAVMS+ +
Sbjct: 292 GIAYFNEHPAVAGAVNQN-----AERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQL 346
Query: 355 LSSSSMFTRNIYKLSFR 371
L SS T ++YK R
Sbjct: 347 LVCSSAITEDLYKAFLR 363
Score = 30.4 bits (68), Expect = 2.5
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 378 WVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFR 416
W+A L A+ AAVMS+ +L SS T ++YK R
Sbjct: 325 WIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLR 363
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and
related proteins; solute binding domain. This subfamily
includes the solute-binding domain of SGLT proteins that
cotransport Na+ with various solutes. Its members
include: the human glucose (SGLT1, -2, -4, -5 ),
chiro-inositol (SGLT5), and myo-inositol (SMIT)
cotransporters. It also includes human SGLT3 which has
been characterized as a glucose sensor and not a
transporter. It belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 564
Score = 35.0 bits (81), Expect = 0.078
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 318 SNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLT 375
SN P ++ EL P + L + AA+MSS + SSS++FT +I+K RP+ +
Sbjct: 333 SNIAYPKLVLELMPVGLRGLMLAVMLAALMSSLTSIFNSSSTLFTMDIWKR-IRPRAS 389
Score = 31.5 bits (72), Expect = 0.94
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 373 KLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK 418
+L P + L + AA+MSS + SSS++FT +I+K RP+
Sbjct: 343 ELMPVGLRGLMLAVMLAALMSSLTSIFNSSSTLFTMDIWKR-IRPR 387
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 34.5 bits (79), Expect = 0.12
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 10 IIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEAL 69
I+I++ +VLA+GVWA + LAGR++ + +L A+ +G G+ A
Sbjct: 6 IVIYFVVVLAVGVWAMVRTNRGTVGGFFLAGRSMVWWPIGASLFASNIGSGHFVGLAGTG 65
Query: 70 FTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAY-GNRIGGLLFLPALC 128
G+ + +V+ LFV +A VTM + ++ + G RI L + +L
Sbjct: 66 AAGGIAIGGFEWNALVVVVILGWLFVPIYIKAGVVTMPEYLRKRFGGQRIQIYLSVLSLL 125
Query: 129 GDVF 132
VF
Sbjct: 126 LYVF 129
Score = 31.8 bits (72), Expect = 0.92
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 279 LSALLCFSMAIPAGAFGIIARM----VDWSAIPTYGKNFTAAE---SNSVLPLVLKELTP 331
L L F M P G+I+R+ +P+ K E +N P ++ EL P
Sbjct: 294 LKLLPMFLMVFP----GMISRILYTDEIACVVPSECKKVCGTEVGCTNIAYPKLVVELMP 349
Query: 332 NWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIY 366
N + L + A++MSS + S+S++FT +IY
Sbjct: 350 NGLRGLMLSVMLASLMSSLTSIFNSASTLFTMDIY 384
>gnl|CDD|212038 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfamily, Escherichia
coli YidK-like; solute binding domain. Uncharacterized
subfamily of the solute binding domain of the solute
carrier 5 (SLC5) transporter family (also called the
sodium/glucose cotransporter family or solute sodium
symporter family) that co-transports Na+ with sugars,
amino acids, inorganic ions or vitamins. One member of
the SLC5 family, human SGLT3, has been characterized as
a glucose sensor and not a transporter. This subfamily
includes the uncharacterized Escherichia coli YidK
protein, and belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 472
Score = 34.0 bits (79), Expect = 0.15
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 323 PLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFF 382
P ++ ++ P W+ F + A++SS ++ + S++++F+ +IYK P T +
Sbjct: 311 PTLVADVLPKWLVGFFAAVLFGAILSSFNSALNSAATLFSLDIYKPIINPNATDKQLVKV 370
Query: 383 G 383
G
Sbjct: 371 G 371
Score = 31.7 bits (73), Expect = 0.87
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 376 PNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVD 420
P W+ F + A++SS ++ + S++++F+ +IYK P
Sbjct: 319 PKWLVGFFAAVLFGAILSSFNSALNSAATLFSLDIYKPIINPNAT 363
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and 2. SMCT1(the product
of the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and
pyruvate, short-chain fatty acids, ketone bodies,
nicotinate and its structural analogs, pyroglutamate,
benzoate and its derivatives, and iodide. SMCT2
(product of the SLC5A12 gene) is a low-affinity
transporter for short-chain fatty acids, lactate,
pyruvate, and nicotinate. This subfamily belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 33.7 bits (78), Expect = 0.19
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 10 IIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGG-GYINATAEA 68
I ++ ++L IG++ K K+ E+ L GR + ++ ++ AT + G +++ E
Sbjct: 5 IALYLLILLLIGIYTSRKNKS--NEDFFLGGRQMPWYLVAFSMIATSLSGVTFLSVPGEV 62
Query: 69 LFTTGLVWCQVPLGYSLALVVGALLFV 95
+ +G + Q LGY L ++ A + +
Sbjct: 63 -YGSGFTYLQFVLGYLLGYLIIAFVLL 88
Score = 29.0 bits (66), Expect = 5.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 318 SNSVLP-LVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRP 372
+ + P L L P F G + AA MSSAD+ + + +++F + K R
Sbjct: 307 GDQLFPYFALDGLPPGLPGLFVAG-IIAAAMSSADSALNALTTVFCEDFLKRFKRS 361
Score = 28.3 bits (64), Expect = 9.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 386 AVTAAVMSSADAGILSSSSMFTRNIYKLSFRP 417
+ AA MSSAD+ + + +++F + K R
Sbjct: 330 GIIAAAMSSADSALNALTTVFCEDFLKRFKRS 361
>gnl|CDD|212059 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotransporter SGLT6
and related proteins; solute-binding domain. Human
SGLT6 (also called KST1, SMIT2) is a chiro-inositol
transporter, which also transports myo-inositol. It is
encoded by the SLC5A11 gene. Xenopus Na1-glucose
cotransporter type 1 (SGLT-1)-like protein is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 602
Score = 32.5 bits (74), Expect = 0.46
Identities = 26/108 (24%), Positives = 53/108 (49%)
Query: 10 IIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEAL 69
+++++ VLA+G+W+ K K + LAG+++ + +L A+ VG G+ A +
Sbjct: 5 LVLYFLFVLAVGLWSMWKTKRSTVKGYFLAGKDMVWWPVGASLFASNVGSGHFIGLAGSG 64
Query: 70 FTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNR 117
+G+ +++V A LF+ A TM + Q+ +G +
Sbjct: 65 AASGIAATAYEWNGMFSVLVLAWLFLPIYIAAGVTTMPEYLQKRFGGK 112
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and
related proteins; solute-binding domain. Human SGLT5 is
a glucose transporter, which also transports galactose.
It is encoded by the SLC5A10 gene, and is exclusively
expressed in the renal cortex. This subgroup belongs to
the solute carrier 5 (SLC5) transporter family.
Length = 604
Score = 32.6 bits (74), Expect = 0.48
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Query: 4 VYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYIN 63
V + I +++ L +A+G+W+ + + LAGR++ + +L A+ G G
Sbjct: 2 VADIIVIGVYFALNVAVGIWSSCRVSRNTVSGYFLAGRDMAWWPIGASLFASSEGSGLFI 61
Query: 64 ATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAY-GNRIGGLL 122
A G+ + AL+ A +FV + VTM + Q+ + G RI L
Sbjct: 62 GLAGTGAAGGIAVAGFEWNATYALLALAWVFVPVYISSGIVTMPEYLQRRFGGERIRMYL 121
Query: 123 FLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAIS 157
+ +L VF S G++ +CL + +S
Sbjct: 122 SVLSLLLSVFTKISTDLYSGALFVQVCLGWNLYLS 156
Score = 31.1 bits (70), Expect = 1.3
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 258 QSYFQRVLSLRSTKAAYHLSTLSALL----CFSMAIPAGAFGIIARMVDWSAI----PTY 309
Q QR LS RS A S L++ L + +P G+I+R + + P
Sbjct: 266 QVIVQRSLSARSLSHAKGGSILASYLKMLPMGLIIMP----GMISRALFPDDVACVDPEE 321
Query: 310 GKNFTAAE---SNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIY 366
AE SN P ++ EL P+ + + + AA+MSS + SSS++FT +I+
Sbjct: 322 CLRVCGAEVGCSNIAYPKLVMELMPSGLRGLMIAVMMAALMSSLTSIFNSSSTLFTMDIW 381
Query: 367 KLSFRPK 373
+ RP
Sbjct: 382 R-RLRPG 387
>gnl|CDD|217441 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7. Members of
this family contain two repeats of about 90 amino acids,
that contains two conserved motifs. One of these DXEXXH
may be part of an enzyme active site.
Length = 170
Score = 31.4 bits (72), Expect = 0.54
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 361 FTRNIYKLSFRP-KLTPNW-VAFFGLGAVTAA 390
F I + RP L P W VA F LGA TA
Sbjct: 52 FNELILERRVRPTLLLPLWHVAGFALGAGTAL 83
>gnl|CDD|212056 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporter SGLT2 and
related proteins; solute-binding domain. Human SGLT2
(hSGLT2) is a high-capacity, low-affinity glucose
transporter, that plays an important role in renal
glucose reabsorption. It is encoded by the SLC5A2 gene
and expressed almost exclusively in renal proximal
tubule cells. Mutations in hSGLT2 cause Familial Renal
Glucosuria (FRG), a rare autosomal defect in glucose
transport. hSGLT2 is a major drug target for regulating
blood glucose levels in diabetes. hSGLT2 is predicted to
have 14 membrane-spanning regions. This subgroup belongs
to the solute carrier 5 (SLC5) transporter family.
Length = 583
Score = 31.8 bits (72), Expect = 0.75
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 318 SNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK 373
SN P ++ +L PN + L + AA+MSS + SSS++FT +I+ RP+
Sbjct: 339 SNIAYPKLVVKLMPNGLRGLMLAVMLAALMSSLASIFNSSSTLFTMDIWT-RLRPQ 393
>gnl|CDD|212035 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose
cotransporter (vSGLT) and related proteins; solute
binding domain. vSGLT transports D-galactose,
D-glucose, and alpha-D-fucose, with a sugar specificity
in the order of D-galactose >D-fucose >D-glucose. It
transports one Na+ ion for each sugar molecule, and
appears to function as a monomer. vSGLT has 13
transmembrane helices (TMs): TM-1, an inverted topology
repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered
to conform to the solute carrier 6 family Aquifex
aeolicus LeuT). This subfamily belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 523
Score = 31.8 bits (73), Expect = 0.86
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 325 VLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGL 384
L P + A+TAA++SS + + S S++FT +IYK + + G
Sbjct: 321 WLLRNLPTGLKGLVFAALTAAIVSSLASMLNSISTIFTMDIYKKYINKDASEKQLVNVGR 380
Query: 385 GAVTAAV 391
A AV
Sbjct: 381 IAAVVAV 387
Score = 29.5 bits (67), Expect = 4.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 376 PNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK 418
P + A+TAA++SS + + S S++FT +IYK
Sbjct: 327 PTGLKGLVFAALTAAIVSSLASMLNSISTIFTMDIYKKYINKD 369
>gnl|CDD|212060 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransporter SMIT and
related proteins; solute-binding domain. Human SMIT is
a high-affinity myo-inositol transporter, and is
expressed in brain, heart, kidney, and lung. Inhibition
of myo-inositol uptake, through down-regulation of SMIT,
may be a common mechanism of action of mood stabilizers,
including lithium, carbamazepine, and valproate. SMIT is
encoded by the SLC5A3 gene, which is a candidate gene
for pathogenesis of nervous system dysfunction in Down
syndrome (DS). The SNP, 21q22 near SLC5A3-MRPS6-KCNE2,
has been associated with coronary heart disease,
cardiovascular disease, and myocardial infarction. SMIT
may also be involved in the pathogeneisis of congenital
cataract. SMIT also plays roles in osteogenesis, bone
formation, and bone mineral density determination. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 600
Score = 30.9 bits (70), Expect = 1.6
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 258 QSYFQRVLSLRSTKAAYHLSTLSALL----CFSMAIPAGAFGIIARMVDWSAIPTYGK-- 311
Q QRVL+ +S A + + L F + IP G+I+R++ +
Sbjct: 265 QVIVQRVLAAKSLSHAQGATLFAGFLKVLPLFIIVIP----GMISRILFPDEVACIPPEH 320
Query: 312 -----NFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIY 366
A SN P ++ + P+ + + + AA+MS D+ S+S++FT ++Y
Sbjct: 321 CMAVCGSRAGCSNIAYPRLVLNIMPSGLRGLMMAVMLAALMSDLDSIFNSASTIFTIDVY 380
Query: 367 KLSFRPK 373
K +
Sbjct: 381 KRIRKKA 387
>gnl|CDD|140204 PTZ00176, PTZ00176, erythrocyte membrane protein 1 (PfEMP1);
Provisional.
Length = 1317
Score = 31.2 bits (70), Expect = 1.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 79 VPLGYSLALVVGALLF---VKPMREASYVTMLDPFQQAYG 115
VP G +AL +G LLF K R+ + +L Q YG
Sbjct: 891 VPAGIGVALTLGLLLFKMRRKAKRQVDMIRILQMSQNEYG 930
>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional.
Length = 895
Score = 30.4 bits (69), Expect = 2.5
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 330 TPNWVAFFGLGAVTAAVMSS-----ADAGILSSSSMFTRNIY 366
P+ FF A T A M DA I++SSS FT + Y
Sbjct: 711 APDQHDFF---AATVAAMDQLNLNIHDARIITSSSQFTLDTY 749
Score = 30.4 bits (69), Expect = 2.5
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 375 TPNWVAFFGLGAVTAAVMSS-----ADAGILSSSSMFTRNIY 411
P+ FF A T A M DA I++SSS FT + Y
Sbjct: 711 APDQHDFF---AATVAAMDQLNLNIHDARIITSSSQFTLDTY 749
>gnl|CDD|212057 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporter SGLT4 and
related proteins; solute-binding domain. Human SGLT4
(hSGLT4) has been reported to be a low-affinity glucose
transporter with unusual sugar selectivity: it
transports D-mannose but not galactose or
3-O-methyl-D-glucoside. It is encoded by the SLC5A9 gene
and is expressed in intestine, kidney, liver, brain,
lung, trachea, uterus, and pancreas. hSLGT4 is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5 )transporter
family.
Length = 605
Score = 29.9 bits (67), Expect = 3.5
Identities = 24/108 (22%), Positives = 47/108 (43%)
Query: 10 IIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEAL 69
+++++ VLA+G+W+ + LAGR++ + +L ++ VG G A
Sbjct: 5 VVVYFVFVLAVGIWSSIRASRGTVGGYFLAGRSMTWWPIGASLMSSNVGSGLFIGLAGTG 64
Query: 70 FTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNR 117
GL + L+ +FV A VTM + ++ +G +
Sbjct: 65 AAGGLAVGGFEWNATWVLLALGWIFVPVYIAAGVVTMPEYLKKRFGGQ 112
Score = 28.3 bits (63), Expect = 8.9
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 318 SNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLT 375
SN P ++ EL P + + + AA+MSS + SSS++FT +++ R +
Sbjct: 330 SNIAYPKLVVELMPVGLRGLMIAVIMAALMSSLTSIFNSSSTLFTIDVW-QRIRRNAS 386
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports
biotin, pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 479
Score = 29.1 bits (66), Expect = 4.9
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 7 LAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATA 66
LA I+++ + +G+W +QK+ + L GR++ + L++ AT +
Sbjct: 2 LAVIVLYLLGLALLGLWLSGRQKS--TADYFLGGRSMPWWAVCLSIVATETSTLTFLSVP 59
Query: 67 EALFTTGLVWCQVPLGYSLALVVGALLFVKP 97
+ L + Q+ LGY L ++ A + +
Sbjct: 60 GVAYGGDLTFLQLALGYILGRIIVAFVLLPR 90
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic
ions or vitamins. SLC6s include Na+/Cl--dependent plasma
membrane transporters for the monoamine
neurotransmitters serotonin, dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NCS1s are essential components of
salvage pathways for nucleobases and related
metabolites; their known substrates include allantoin,
uracil, thiamine, and nicotinamide riboside. Members of
this superfamily are important in human physiology and
disease. They contain a functional core of 10
transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 29.1 bits (65), Expect = 4.9
Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 218 LKEPNMTIFSKVDWLGT---VETKDYGLWIEGMLLLAFGGIPW---QSYFQRVLSLRSTK 271
+ VD + G+ + L W Q QR L+ +S
Sbjct: 162 FIGGFAGVSKMVDAAPGHFEMILNLPGIAVAIGGLWVANLYYWGFIQYIIQRTLADKSVS 221
Query: 272 AAYHLSTLSALLCFSMAIPAGAFGIIARMV--DWSAIPTYGKNFTAAESNSVLPLVLKEL 329
A +A L I G GI A ++ D + + G +AA ++ P + + L
Sbjct: 222 EAQKGIVFAAFLMLIAPILVGLIGIAAYVITSDPQLMASLGNLPSAANADKAYPWLTQFL 281
Query: 330 TPN-WVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYK 367
+ V A+ AA++SS A + S++++ T +IYK
Sbjct: 282 PGSVGVKGLVFAALAAAIVSSLAAMLNSTATILTMDIYK 320
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1
and related proteins; solute-binding domain. SMCT1 is
a high-affinity transporter of various monocarboxylates
including lactate and pyruvate, short-chain fatty
acids, ketone bodies, nicotinate and its structural
analogs, pyroglutamate, benzoate and its derivatives,
and iodide. Human SMCT1 (hSMCT1, also called AIT) is
encoded by the tumor suppressor gene SLC5A8. Its
expression is under the control of the C/EBP
transcription factor. Its tumor-suppressive role is
related to uptake of butyrate, propionate, and
pyruvate, these latter are inhibitors of histone
deacetylases. SMCT1 is expressed in the colon, small
intestine, kidney, thyroid gland, retina, and brain.
SMCT1 may contribute to the intestinal/colonic and oral
absorption of monocarboxylate drugs. SMCT1 also
mediates iodide transport from thyrocyte into the
colloid lumen in thyroid gland and through transporting
l-lactate and ketone bodies helps maintain the energy
status and the function of neurons. In the kidney its
expression is limited to the S3 segment of the proximal
convoluted tubule (in contrast to the low-affinity
monocarboxylate transporter SMCT2, belonging to a
different family, which is expressed along the entire
length of the tubule). In the retina, SMCT1 and SMCT2
may play a differential role in monocarboxylate
transport in a cell type-specific manner, SMCT1 is
expressed predominantly in retinal neurons and in
retinal pigmented epithelial (RPE) cells. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 541
Score = 28.9 bits (65), Expect = 5.5
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 8 AGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAE 67
A I I+Y +AG QK + ++ GR++ L+LTA+++ + T
Sbjct: 20 AAIGIYYA-------FAGGGQKTSKD--FLMGGRSMTAVPVALSLTASFMSAVTVLGTPA 70
Query: 68 ALFTTGLVWCQVPLGYSLALVVGALLFV 95
++ G ++ Y++ +++ A +F+
Sbjct: 71 EVYRFGAIFSIFAFSYAIVVLISAEVFL 98
>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in
choline phosphorylation for cell surface LPS epitopes
[Cell envelope biogenesis, outer membrane].
Length = 231
Score = 28.6 bits (64), Expect = 6.5
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 350 ADAGILSSSSMFTRNIYKLS---------FRPKLTPNWVAFFGL-GAVTAAVMSSADAGI 399
+ I+ S + T+NI+ +R T W+ + G +T + + I
Sbjct: 94 NNTYIIDSDNYLTKNIFLTKESHSKYFAVYRSGKTNEWLLIYNSDGKITRVDIGGLNGYI 153
Query: 400 LSSSSMFTRN 409
+S S F
Sbjct: 154 MSGISFFDAQ 163
>gnl|CDD|226626 COG4146, COG4146, Predicted symporter [General function prediction
only].
Length = 571
Score = 29.0 bits (65), Expect = 6.9
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 258 QSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAE 317
Q QR L+ +S + L+A+ + G+IA + + +P +
Sbjct: 263 QGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGLIAFHL-YGDLPKADMAYPTL- 320
Query: 318 SNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTP 376
N+VLP+ L V FFG + A++S+ + + S+S++F+ +IY+ +
Sbjct: 321 VNNVLPVPL-------VGFFG-AVLFGAILSTFNGFLNSASTLFSMDIYRRIIKQNAEE 371
>gnl|CDD|221176 pfam11707, Npa1, Ribosome 60S biogenesis N-terminal. Npa1p is
required for ribosome biogenesis and operates in the
same functional environment as Rsa3p and Dbp6p during
early maturation of 60S ribosomal subunits. The protein
partners of Npa1p include eight putative helicases as
well as the novel Npa2p factor. Npa1p can also associate
with a subset of H/ACA and C/D small nucleolar RNPs
(snoRNPs) involved in the chemical modification of
residues in the vicinity of the peptidyl transferase
centre. The protein has also been referred to as Urb1,
and this domain at the N-terminal is one of several
conserved regions along the length.
Length = 327
Score = 28.4 bits (64), Expect = 7.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 361 FTRNIYKLSFRPKLTPNWVAF 381
F + S PKLT W+ +
Sbjct: 306 FNKLSLSFSHDPKLTSTWLGY 326
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.428
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,621,993
Number of extensions: 2336240
Number of successful extensions: 2453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2415
Number of HSP's successfully gapped: 151
Length of query: 454
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 354
Effective length of database: 6,502,202
Effective search space: 2301779508
Effective search space used: 2301779508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.2 bits)