RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14002
(454 letters)
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 77.9 bits (192), Expect = 1e-15
Identities = 68/416 (16%), Positives = 142/416 (34%), Gaps = 32/416 (7%)
Query: 10 IIIFYTLVLAIGVWAG--TKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAE 67
I+ +++ +G+W K E+ LAG+++ + +L A + +
Sbjct: 16 FAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSG 75
Query: 68 ALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPAL 127
+ ++ GL ++ L++ F+ E T+ + ++ + ++ +L + +
Sbjct: 76 SGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWI 135
Query: 128 CGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKI-DWLGTVETKDY- 185
+F + + LG + L P S + +F+ + G + +
Sbjct: 136 SLYIFVNLTSVLYLGGLALETILGIPLMYSILG-------LALFALVYSIYGGLSAVVWT 188
Query: 186 -----------GLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGT 234
G M + GG + A + + + L
Sbjct: 189 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPG 248
Query: 235 VETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAF 294
+ GLW+ + F Q QR L+ +S A +A L +
Sbjct: 249 IAVLIGGLWVANLYYWGFN----QYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLP 304
Query: 295 GIIAR------MVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMS 348
GI A + S N +A + L + P V A+ AA++S
Sbjct: 305 GIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLPVGVKGVVFAALAAAIVS 364
Query: 349 SADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSS 404
S + + S++++FT +IYK P + + G A A++ +A +
Sbjct: 365 SLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIAALIAPMLGGI 420
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 66.7 bits (163), Expect = 5e-12
Identities = 61/386 (15%), Positives = 131/386 (33%), Gaps = 32/386 (8%)
Query: 39 AGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPM 98
AG+++ + +L A + + + ++ GL ++ L++ F+
Sbjct: 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIF 77
Query: 99 REASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISN 158
E T+ + ++ + ++ +L + + +F + + LG + L P S
Sbjct: 78 IEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSI 137
Query: 159 AQPYLKEPNMTIFSKI-DWLGTVETKDY------------GLWIEGMLLLAFGGIPWQCL 205
+ +F+ + G + + G M + GG
Sbjct: 138 LG-------LALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFA 190
Query: 206 SFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVL 265
+ A + + + L + GLW+ + F Q QR L
Sbjct: 191 GVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFN----QYIIQRTL 246
Query: 266 SLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMV-------DWSAIPTYGKNFTAAES 318
+ +S A +A L + GI A ++ +AA +
Sbjct: 247 AAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANA 306
Query: 319 NSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNW 378
+ P + + L P V A+ AA++SS + + S++++FT +IYK P +
Sbjct: 307 DKAYPWLTQFL-PVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHK 365
Query: 379 VAFFGLGAVTAAVMSSADAGILSSSS 404
+ G A A++ + +
Sbjct: 366 LVNVGRTAAVVALIIACLIAPMLGGI 391
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 67/409 (16%), Positives = 120/409 (29%), Gaps = 134/409 (32%)
Query: 87 LVVGALLFVKPMREASYV--------TMLDPFQQAYGNRIGGLLFLPALCG-DVFWIASV 137
LV L +V + E S V L F+ Y L G D I ++
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY------------LEGND---IHAL 104
Query: 138 LSSLGSVVDTLCLSFPFAISN--------AQPYLKEPNMTIFSKIDWLGTVETKDYGLWI 189
+ L DT + I N +P+ K+ N +F V + L
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA------VGEGNAQLV- 157
Query: 190 EGMLLLAFGGIPWQCLSFPFAISNAQPYLKE---------PNM-----TIFSKVDWLGTV 235
FGG Q N Y +E + + L
Sbjct: 158 -----AIFGG---Q--------GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 236 ETKDYGLWIEGMLLLAF----GGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPA 291
++ +G+ +L + P + Y L S + L + L +
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDY------LLSIPISCPLIGVIQLAHYV----- 250
Query: 292 GAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGA--VTAAVMSS 349
+ A+++ ++ P EL G VTA ++
Sbjct: 251 ----VTAKLLGFT------------------P---GELRSYLKGATGHSQGLVTAVAIAE 285
Query: 350 ADAGILSSSSMF--TRNIYKLSFRPKLTPNWVAF-----FGLGAVTAAVMS-SADAGILS 401
D S S F R + F ++ + ++ +++ S +
Sbjct: 286 TD----SWESFFVSVRKAITVLF-------FIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 402 SSSMFT-RNIYKLSFRPKVDLTPDEHP---HYQVDLTGTAEKVQMSGLP 446
S M + N+ + + V+ T P ++ L A+ + +SG P
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Score = 30.0 bits (67), Expect = 2.3
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 28/115 (24%)
Query: 250 LAFGGIPWQSYFQRVLSLR----STKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSA 305
L + + + ++ T L LS + + + II V W
Sbjct: 443 LVKNNVSFNAK-----DIQIPVYDTFDGSDLRVLSGSISERI-VDC----IIRLPVKWET 492
Query: 306 IPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSM 360
T ++ +L + P + GLG +T ++ + ++
Sbjct: 493 T-------TQFKATHIL-----DFGPGGAS--GLGVLTHRNKDGTGVRVIVAGTL 533
Score = 28.5 bits (63), Expect = 7.0
Identities = 20/121 (16%), Positives = 33/121 (27%), Gaps = 45/121 (37%)
Query: 281 ALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKE--LTPNWVAFFG 338
AL A + LK L P F G
Sbjct: 1735 ALTLMEKAA-------------FE--------------------DLKSKGLIPADATFAG 1761
Query: 339 --LGAVTAAVMSSADAGILSSSSM----FTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVM 392
LG A + A ++S S+ F R + P+ + +G+ A+ +
Sbjct: 1762 HSLGEYAALA---SLADVMSIESLVEVVFYRGMTMQVAVPR-DELGRSNYGMIAINPGRV 1817
Query: 393 S 393
+
Sbjct: 1818 A 1818
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.003
Identities = 46/334 (13%), Positives = 90/334 (26%), Gaps = 110/334 (32%)
Query: 2 VDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGY 61
V + G+ G +A+ V ++ + M + +F W+
Sbjct: 153 VLIDGVLG---SGKTWVALDVC-----LSYKVQCKM----DFKIF---------WLNLKN 191
Query: 62 INATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPF--QQAYGNRIG 119
N+ L + Q+ ++ + + +R S L + Y N
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKPYEN--- 245
Query: 120 GLLFLPALCGDVFWIASVLSSLG------------SVVDTLCLSFPFAIS---NAQPYLK 164
LL L +V A ++ V D L + IS ++
Sbjct: 246 CLLVL----LNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 165 EPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQ-CLSFPFAISNAQPYLKEPNM 223
+ ++ K +L +D +P + + P +S +++
Sbjct: 301 DEVKSLLLK--YLD-CRPQD---------------LPREVLTTNPRRLSIIAESIRDGLA 342
Query: 224 TIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSY----FQRVL--SLRSTKAAYHLS 277
T W D W+ ++ SL + A +
Sbjct: 343 T------W-------DN----------------WKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 278 TLSALLCF--SMAIPAGAFGIIARMVDWSAIPTY 309
L F S IP +I W +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLI-----WFDVIKS 402
Score = 35.2 bits (80), Expect = 0.053
Identities = 44/280 (15%), Positives = 76/280 (27%), Gaps = 91/280 (32%)
Query: 91 ALLFVKPMREASYVTMLDPFQQAYGNRIGG-------------LLFLPALCGDVFWIASV 137
ALL ++P A V + G + G + +FW+
Sbjct: 143 ALLELRP---AKNVLI-------DG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWL--- 187
Query: 138 LSSLGSV---------VDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWL-GTVETKDYGL 187
+L + + L ++ + + I S L +++K Y
Sbjct: 188 --NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-- 243
Query: 188 WIEGMLLL----------AFGGIPWQC----LSFPFAISNAQPYLKEPNMTIFSKVDWLG 233
+L+L AF C + +++ L T S
Sbjct: 244 -ENCLLVLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDF---LSAATTTHISLDHHSM 296
Query: 234 TVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGA 293
T+ T D E LL + L R L L +
Sbjct: 297 TL-TPD-----EVKSLLL-----------KYLDCRPQD----LP-REVLTTNPRRL---- 330
Query: 294 FGIIARMV-DWSAIPTYGKNFTAAESNSVLPLVLKELTPN 332
IIA + D A K+ + +++ L L P
Sbjct: 331 -SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Score = 32.9 bits (74), Expect = 0.26
Identities = 56/372 (15%), Positives = 107/372 (28%), Gaps = 102/372 (27%)
Query: 115 GNRIGGLLFLPALCGDVFWIASVLSSLGS------VVDTLCLSFPFAISNAQPYLKEPNM 168
+ + G L L FW L S V + L +++ F +S + ++P+M
Sbjct: 58 KDAVSGTLRL-------FWT---LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 169 TIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSF-PFAISNAQPYLK-------- 219
T+ Y + + + F + +S QPYLK
Sbjct: 108 ------------MTRMYIEQRDRL----YNDNQ----VFAKYNVSRLQPYLKLRQALLEL 147
Query: 220 --EPNMTI-----FSKVDWLGTVET-KDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTK 271
N+ I K W+ ++ Y + I W L+L++
Sbjct: 148 RPAKNVLIDGVLGSGK-TWV-ALDVCLSYKV-----QCKMDFKIFW-------LNLKNCN 193
Query: 272 AAYHLSTLSALLCFSM-----AIPAGAFGIIARMVDWSAIPTYGKNFTAAES-NSVLPLV 325
+ + + L + + + + I R+ A + ++ + L LV
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA---ELRRLLKSKPYENCL-LV 249
Query: 326 LKEL-TPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPK-LTP-NWVAFF 382
L + F L ++++ + S T L LTP +
Sbjct: 250 LLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 383 G--LGAVTAAVMSSADAGILSSSSMFTRNI---------YKLSFRPKVD---------LT 422
L + S+ +I +K K+ L
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 423 PDEHPHYQVDLT 434
P E+ L+
Sbjct: 368 PAEYRKMFDRLS 379
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 27.9 bits (63), Expect = 7.0
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 338 GLGAVTAAVMSSADAG--ILSSSSMF 361
G+ AV ++ + AG ++++ S+F
Sbjct: 105 GMAAVFTSLGALLGAGDRLVAARSLF 130
Score = 27.9 bits (63), Expect = 7.0
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 383 GLGAVTAAVMSSADAG--ILSSSSMF 406
G+ AV ++ + AG ++++ S+F
Sbjct: 105 GMAAVFTSLGALLGAGDRLVAARSLF 130
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 27.9 bits (63), Expect = 8.6
Identities = 7/26 (26%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 338 GLGAVTAAVMSSADAG--ILSSSSMF 361
G+ A+T +++ G I+S+S+++
Sbjct: 88 GISAITTTLLTLCQQGDHIVSASAIY 113
Score = 27.9 bits (63), Expect = 8.6
Identities = 7/26 (26%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 383 GLGAVTAAVMSSADAG--ILSSSSMF 406
G+ A+T +++ G I+S+S+++
Sbjct: 88 GISAITTTLLTLCQQGDHIVSASAIY 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.428
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,033,286
Number of extensions: 419986
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 27
Length of query: 454
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 357
Effective length of database: 3,993,456
Effective search space: 1425663792
Effective search space used: 1425663792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.7 bits)