RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14002
         (454 letters)



>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK
          {Bacillus subtilis [TaxId: 1423]}
          Length = 392

 Score = 26.3 bits (57), Expect = 8.0
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 33 EEEVMLAGRNVGLFVGVLTLTATWVGGGYINAT 65
          E   +     +GLF    TLT   +G G +N  
Sbjct: 10 ESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYV 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,667,556
Number of extensions: 74136
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 5
Length of query: 454
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,199,356
Effective search space: 438964296
Effective search space used: 438964296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.2 bits)