BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14005
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 97/182 (53%), Gaps = 35/182 (19%)
Query: 40 VPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY-DVYKVETIGD 98
PA+ T+ FSDIVGFT I++ SSP+EV ++L+ LY+ FD+ I +Y +YKVETIGD
Sbjct: 2 APAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGD 61
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV 158
AYMVV + + F +R +H
Sbjct: 62 AYMVVCNVTVPCDDHADVLLEFALR--------------------MHE------------ 89
Query: 159 GIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSF 218
E ++ + + IRVG+++GP VAGVVG MPR+ LFGDT+NTASRMES G+
Sbjct: 90 --EASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQI 147
Query: 219 FI 220
I
Sbjct: 148 HI 149
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 97/182 (53%), Gaps = 35/182 (19%)
Query: 40 VPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY-DVYKVETIGD 98
PA+ T+ FSDIVGFT I++ SSP+EV ++L+ LY+ FD+ I +Y +YKVETIGD
Sbjct: 2 APAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGD 61
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV 158
AYMVV + + F +R +H
Sbjct: 62 AYMVVCNVTVPCDDHADVLLEFALR--------------------MHE------------ 89
Query: 159 GIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSF 218
E ++ + + IRVG+++GP VAGVVG MPR+ LFGDT+NTASRMES G+
Sbjct: 90 --EASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQI 147
Query: 219 FI 220
I
Sbjct: 148 HI 149
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 93/173 (53%), Gaps = 34/173 (19%)
Query: 40 VPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDA 99
V A+ F +VT+ FSDIVGFT I + SP++V+ MLN LY FD + + DVYKVETIGDA
Sbjct: 7 VQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDA 66
Query: 100 YMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVG 159
Y V GL + + H +IA M+L ++
Sbjct: 67 YCVAGGLHKES--------------------------------DTHAVQIALMALKMMEL 94
Query: 160 IEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESA 212
+ PH + +++R+G+++G AGVVG MPRYCLFG+ + A++ ES
Sbjct: 95 SDEVMSPH--GEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESC 145
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 34/170 (20%)
Query: 42 AENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYM 101
A+ +D ++ F+DIVGFT ++ ++P ++V L+ LY FD + ++ + K+E GD+YM
Sbjct: 5 ADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYM 64
Query: 102 VVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIE 161
VVSG+P RP H +A +LD+
Sbjct: 65 VVSGVP------------------------------RPRPD--HTQALADFALDMTNVAA 92
Query: 162 HFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMES 211
K P + + +RVG+ TGP VAGVVG+ RYC++GD +N ASRMES
Sbjct: 93 QLKDPR--GNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMES 140
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 93/183 (50%), Gaps = 44/183 (24%)
Query: 40 VPAENFDSVTIYFSDIVGFTNISADSS----PMEVVNMLNTLYKLFD----SRIRKYDVY 91
VPA+ +D+VTI FS IVGF + + M++VN+LN LY FD SR + VY
Sbjct: 5 VPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPF-VY 63
Query: 92 KVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIAT 151
KVET+GD YM VSGLP+ H I
Sbjct: 64 KVETVGDKYMTVSGLPE--------------------------------PCIHHARSICH 91
Query: 152 MSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMES 211
++LD++ ++ + ++I +GI+TG V GV+G MPRYCLFG+T+N SR E+
Sbjct: 92 LALDMMEIAGQVQV---DGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTET 148
Query: 212 AGD 214
G+
Sbjct: 149 TGE 151
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 91/183 (49%), Gaps = 44/183 (24%)
Query: 40 VPAENFDSVTIYFSDIVGFTNISADSS----PMEVVNMLNTLYKLFD----SRIRKYDVY 91
VPA+ +D+VTI FS IVGF + + M++VN+LN LY FD SR + VY
Sbjct: 6 VPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPF-VY 64
Query: 92 KVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIAT 151
KVET+ D YM VSGLP+ H I
Sbjct: 65 KVETVCDKYMTVSGLPE--------------------------------PCIHHARSICH 92
Query: 152 MSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMES 211
++LD++ ++ + ++I +GI+TG V GV+G MPRY LFG+T+N SR E+
Sbjct: 93 LALDMMEIAGQVQV---DGESVQITIGIHTGEVVTGVIGQRMPRYSLFGNTVNLTSRTET 149
Query: 212 AGD 214
G+
Sbjct: 150 TGE 152
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 38/184 (20%)
Query: 43 ENFDSVTIYFSDIVGF----TNISADSSPMEVVNMLNTLYKLFDSRIRK---YDVYKVET 95
+++D V + F+ I F T + +E + +LN + FD + K V K++T
Sbjct: 10 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 69
Query: 96 IGDAYMVVSGLP----QRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIAT 151
IG YM +GL Q + + P R + +H+G +
Sbjct: 70 IGSTYMAATGLSAIPSQEHAQEPE----------------------RQY---MHIGTMVE 104
Query: 152 MSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMES 211
+ L+ ++ H ND ++RVGIN GP +AGV+G P+Y ++G+T+N ASRM+S
Sbjct: 105 FAYALVGKLDAIN-KHSFND-FKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDS 162
Query: 212 AGDL 215
G L
Sbjct: 163 TGVL 166
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 38/184 (20%)
Query: 43 ENFDSVTIYFSDIVGF----TNISADSSPMEVVNMLNTLYKLFDSRIRK---YDVYKVET 95
+++D V + F+ I F T + +E + +LN + FD + K V K++T
Sbjct: 11 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 70
Query: 96 IGDAYMVVSGLP----QRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIAT 151
IG YM +GL Q + + P R + +H+G +
Sbjct: 71 IGSTYMAATGLSAIPSQEHAQEPE----------------------RQY---MHIGTMVE 105
Query: 152 MSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMES 211
+ L+ ++ H ND ++RVGIN GP +AGV+G P+Y ++G+T+N ASRM+S
Sbjct: 106 FAYALVGKLDAIN-KHSFND-FKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDS 163
Query: 212 AGDL 215
G L
Sbjct: 164 TGVL 167
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 38/184 (20%)
Query: 43 ENFDSVTIYFSDIVGF----TNISADSSPMEVVNMLNTLYKLFDSRIRK---YDVYKVET 95
+++D V + F+ I F T + +E + +LN + FD + K V K++T
Sbjct: 7 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 66
Query: 96 IGDAYMVVSGLP----QRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIAT 151
IG YM +GL Q + + P R + +H+G +
Sbjct: 67 IGSTYMAATGLSAIPSQEHAQEPE----------------------RQY---MHIGTMVE 101
Query: 152 MSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMES 211
+ L+ ++ H ND ++RVGIN GP +AGV+G P+Y ++G+T+N ASRM+S
Sbjct: 102 FAYALVGKLDAIN-KHSFND-FKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDS 159
Query: 212 AGDL 215
G L
Sbjct: 160 TGVL 163
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 34/187 (18%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGD 98
++ + D+V+I F+DI GFT++++ + E+V LN L+ FD + +++ +GD
Sbjct: 26 KIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGD 85
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV 158
Y VSGLP+ + + I + R +G
Sbjct: 86 CYYCVSGLPEARADHAHCCVEMGMDMIEAI------SLVREMTGV--------------- 124
Query: 159 GIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSF 218
+ +RVGI++G GV+G ++ ++ + + A+ ME+ G
Sbjct: 125 -------------NVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRI 171
Query: 219 FIVTIVM 225
I +
Sbjct: 172 HITKATL 178
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 34/182 (18%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGD 98
++ + D+V+I F+DI GFT++++ + E+V LN L+ FD + +++ +GD
Sbjct: 26 KIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGD 85
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV 158
Y VSGLP+ + + I + R +G
Sbjct: 86 CYYCVSGLPEARADHAHCCVEMGMDMIEAI------SLVREMTGV--------------- 124
Query: 159 GIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSF 218
+ +RVGI++G GV+G ++ ++ + + A+ ME+ G
Sbjct: 125 -------------NVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRI 171
Query: 219 FI 220
I
Sbjct: 172 HI 173
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 34/187 (18%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGD 98
++ + D+V+I F+DI GFT++++ + E+V LN L+ FD + +++ +GD
Sbjct: 18 KIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGD 77
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV 158
Y VSGLP+ + + I + R +G
Sbjct: 78 CYYCVSGLPEARADHAHCCVEMGMDMIEAI------SLVREMTGV--------------- 116
Query: 159 GIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSF 218
+ +RVGI++G GV+G ++ ++ + + A+ ME+ G
Sbjct: 117 -------------NVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRI 163
Query: 219 FIVTIVM 225
I +
Sbjct: 164 HITKATL 170
>pdb|1FX4|A Chain A, Structure Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 231
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 40 VPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDA 99
P E VT+ F+DI T + A + P + + + T ++L S I +Y+ Y+V+T+GD+
Sbjct: 5 APKEPTGPVTLIFTDIESSTALWA-AHPDLMPDAVATHHRLIRSLITRYECYEVKTVGDS 63
Query: 100 YMVVSGLPQRNGKSPGTAISFYIRNIGSFGGL-----GTKGFFRPFSGTLHVGEIA---- 150
+M+ S KSP A+ F L +R F GE
Sbjct: 64 FMIAS-------KSPFAAVQLAQELQLCFLRLDWETNAVDESYREFEEQRAEGECEYTPP 116
Query: 151 TMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRME 210
T SLD ++ R + L +RVGI+TG C T Y +G T N A+R E
Sbjct: 117 TASLDP-------EVYSRLWNGLRVRVGIHTGLCDIRYDEVTKG-YDYYGRTSNMAARTE 168
Query: 211 SAGD 214
S +
Sbjct: 169 SVAN 172
>pdb|1FX2|A Chain A, Structural Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 235
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGD 98
+ P E D VT+ F+DI T + A + P + + + +++ S I +Y Y+V+T+GD
Sbjct: 4 RAPKEPTDPVTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGD 62
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSF--GGLGTKGF---FRPFSGTLHVGEIATMS 153
++M+ S KSP A+ F GT +R F GE
Sbjct: 63 SFMIAS-------KSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTP 115
Query: 154 LDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAG 213
+ E + R + L +RVGI+TG C T Y +G T N A+R ES
Sbjct: 116 PTAHMDPEVYS---RLWNGLRVRVGIHTGLCDIRHDEVTKG-YDYYGRTPNMAARTESVA 171
Query: 214 D 214
+
Sbjct: 172 N 172
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 69/177 (38%), Gaps = 32/177 (18%)
Query: 47 SVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGL 106
+T++FSDI GFT +S + + ++LN KY + +GD MV G
Sbjct: 9 KLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGD 68
Query: 107 PQRNG--KSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFK 164
P G K A+S G+ + + I
Sbjct: 69 PSTQGAKKDAVAAVSM---------GIAMRKHMKVLRQQWRAQGIT-------------- 105
Query: 165 IPHRPNDKLEIRVGINTGPCVAGVVGT-TMPRYCLFGDTINTASRMESAGDLPSFFI 220
+P LEIR+GINTG C G G T Y + G +N ASR+ESA + I
Sbjct: 106 ---KP---LEIRMGINTGYCTVGNFGADTRMDYTIIGREVNLASRLESASEAGEILI 156
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 33/181 (18%)
Query: 48 VTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLP 107
+TI SD+ GFT+ S +P EVV +LN + I + E +GD +V+ G P
Sbjct: 15 ITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAP 74
Query: 108 QRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLL-VGIEHFKIP 166
A++ + M L L V + +
Sbjct: 75 TSQQDDALRAVACGVE----------------------------MQLALREVNQQVTGLG 106
Query: 167 HRPNDKLEIRVGINTGPCVAGVVGTTM-PRYCLFGDTINTASRMESAGDLPSFFIVTIVM 225
+P LE+ +GINTG V G +G+ +Y + G +N R+ES FI + +
Sbjct: 107 LQP---LEMGIGINTGEVVVGNIGSEKRTKYGVVGAQVNLTYRIESYTTGGQIFISSTTL 163
Query: 226 R 226
Sbjct: 164 E 164
>pdb|1WC1|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC6|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
Length = 226
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 23/180 (12%)
Query: 48 VTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLP 107
+TI FSDIVGFT +S V +LN + + + +GDA M + G P
Sbjct: 35 ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAP 94
Query: 108 QRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPH 167
+ SP + I + G G LVG ++P
Sbjct: 95 EE--MSPSEQVRRAIATARQM----LVALEKLNQGWQERG---------LVG--RNEVP- 136
Query: 168 RPNDKLEIRVGINTGPCVAGVVGTT-MPRYCLFGDTINTASRMESAGDLPSFFIVTIVMR 226
+ R GI+ G V G+ G+ + G ++N A+R++ A S + +V +
Sbjct: 137 ----PVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQ 192
>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC0|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC3|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC3|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC4|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC4|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC5|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|D Chain D, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|2BW7|A Chain A, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|B Chain B, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|C Chain C, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|D Chain D, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
Length = 219
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 23/180 (12%)
Query: 48 VTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLP 107
+TI FSDIVGFT +S V +LN + + + +GDA M + G P
Sbjct: 28 ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAP 87
Query: 108 QRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPH 167
+ SP + I + G G LVG ++P
Sbjct: 88 EE--MSPSEQVRRAIATARQM----LVALEKLNQGWQERG---------LVG--RNEVP- 129
Query: 168 RPNDKLEIRVGINTGPCVAGVVGTT-MPRYCLFGDTINTASRMESAGDLPSFFIVTIVMR 226
+ R GI+ G V G+ G+ + G ++N A+R++ A S + +V +
Sbjct: 130 ----PVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQ 185
>pdb|1Y10|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|B Chain B, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|C Chain C, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|D Chain D, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y11|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme, Active
State
Length = 407
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 47 SVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVV 103
VT+ F+D+VGFT + S E+ ++ L L + V+ ++TIGDA M+V
Sbjct: 215 QVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARD-LTAPPVWFIKTIGDAVMLV 270
>pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|B Chain B, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|C Chain C, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|D Chain D, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|E Chain E, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|F Chain F, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|G Chain G, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|H Chain H, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1SUV|A Chain A, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|B Chain B, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|2NSU|A Chain A, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
pdb|2NSU|B Chain B, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
Length = 639
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 109 RNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLD-LLVGIEHFKIPH 167
++G P +I F + G FG +G + + +LH+ ++LD ++G +FK+
Sbjct: 318 KDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVSA 377
Query: 168 RP 169
P
Sbjct: 378 SP 379
>pdb|3S9L|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 654
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 109 RNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV-GIEHFKIPH 167
++G P +I F + G FG +G + + +LH+ ++LD V G +FK+
Sbjct: 333 KDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVSA 392
Query: 168 RP 169
P
Sbjct: 393 SP 394
>pdb|1DE4|C Chain C, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|F Chain F, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|I Chain I, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|3KAS|A Chain A, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 640
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 109 RNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV-GIEHFKIPH 167
++G P +I F + G FG +G + + +LH+ ++LD V G +FK+
Sbjct: 319 KDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVSA 378
Query: 168 RP 169
P
Sbjct: 379 SP 380
>pdb|3GO9|A Chain A, Predicted Insulinase Family Protease From Yersinia Pestis
Length = 492
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 163 FKIPHRPNDKLEIRVGINTGPCVAGV--VGTT--MPRYCLFGDTINTASRMES 211
P RP+D++E+R+ +NTG VG +PR L T ++++S
Sbjct: 40 LATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALXSSASFTPAQLQS 92
>pdb|3EWG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Nusg (Ngn)
From Methanocaldococcus Jannaschii
Length = 91
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 53 SDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGK 112
+I G A+ ++V ++L + ++ Y + + ET GD ++ G+P+ G
Sbjct: 13 KNIAGLMASRAEKEQLDVYSILAS------ESLKGYVLVEAETKGDVEELIKGMPRVRGI 66
Query: 113 SPGT 116
PGT
Sbjct: 67 VPGT 70
>pdb|3LPE|A Chain A, Crystal Structure Of Spt45NGN HETERODIMER COMPLEX FROM
METHANOCOCCUS Jannaschii
pdb|3LPE|C Chain C, Crystal Structure Of Spt45NGN HETERODIMER COMPLEX FROM
METHANOCOCCUS Jannaschii
pdb|3LPE|E Chain E, Crystal Structure Of Spt45NGN HETERODIMER COMPLEX FROM
METHANOCOCCUS Jannaschii
pdb|3LPE|G Chain G, Crystal Structure Of Spt45NGN HETERODIMER COMPLEX FROM
METHANOCOCCUS Jannaschii
Length = 92
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 53 SDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGK 112
+I G A+ ++V ++L + ++ Y + + ET GD ++ G+P+ G
Sbjct: 23 KNIAGLMASRAEKEQLDVYSILAS------ESLKGYVLVEAETKGDVEELIKGMPRVRGI 76
Query: 113 SPGT 116
PGT
Sbjct: 77 VPGT 80
>pdb|3MR7|A Chain A, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|B Chain B, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|C Chain C, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
Length = 189
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 170 NDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSFFIVTIV 224
++++ R+GIN G V + +FGD +N A+R+E+ + + + IV
Sbjct: 91 KERIQYRIGINIGDIV-------LEDGDIFGDAVNVAARLEAISEPGAICVSDIV 138
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 61 ISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS-GLPQRNGK------S 113
I + P E L+ + D DV KVET+ DAY+ + P + K +
Sbjct: 364 IKLELQPSEGTEQLSIHFNAVDGFFFYEDVNKVETVTDAYIKLELKSPIKRNKLMRFMVT 423
Query: 114 PGTAISFYIRNIGSFGGLGTKGFFRP 139
++F++ + S G + GF RP
Sbjct: 424 CTERMTFFVYYVMSKGNIIDAGFMRP 449
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 61 ISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS-GLPQRNGK------S 113
I + P E L+ + D DV KVET+ DAY+ + P + K +
Sbjct: 364 IKLELQPSEGTEQLSIHFNAVDGFFFYEDVNKVETVTDAYIKLELKSPIKRNKLMRFMVT 423
Query: 114 PGTAISFYIRNIGSFGGLGTKGFFRP 139
++F++ + S G + GF RP
Sbjct: 424 CTERMTFFVYYVMSKGNIIDAGFMRP 449
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 61 ISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS-GLPQRNGK------S 113
I + P E L + D DV KVET+ DAY+ + P + K +
Sbjct: 364 IKLELQPSEGTEQLGINFNAVDGFFFYEDVNKVETVTDAYIKLELKSPIKRNKLMRFMVT 423
Query: 114 PGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEI 149
++F++ + S G + GF RP T ++ ++
Sbjct: 424 CTERMTFFVYYVMSKGNIIDAGFMRPNKQTKYLLQL 459
>pdb|3NIP|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|E Chain E, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|F Chain F, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIQ|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase
pdb|3NIQ|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase
Length = 326
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 57 GFTN-ISADSSPMEVVNMLNTLYKLFD-SRIRKYDVYKVETIGDA 99
G TN A P EV N+ + + K+ SRI YD+ +V +GDA
Sbjct: 47 GTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDLVRVGDLGDA 91
>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein)
From Bacillus Subtilis
Length = 78
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 60 NISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDA 99
++ ADS ++VV ++ L FD I D K+ T+GDA
Sbjct: 33 DLGADS--LDVVELVMELEDEFDMEISDEDAEKIATVGDA 70
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 60 NISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDA 99
++ ADS ++VV ++ L FD I D K+ T+GDA
Sbjct: 31 DLGADS--LDVVELVMELEDEFDMEISDEDAEKIATVGDA 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,659,648
Number of Sequences: 62578
Number of extensions: 283658
Number of successful extensions: 529
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 53
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)