Query psy14005
Match_columns 226
No_of_seqs 155 out of 1067
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:06:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00044 CYCc Adenylyl- / gu 100.0 2.8E-33 6E-38 225.5 16.2 172 23-226 9-183 (194)
2 PF00211 Guanylate_cyc: Adenyl 100.0 7.5E-34 1.6E-38 226.7 11.1 152 41-226 2-153 (184)
3 KOG4171|consensus 100.0 2.4E-33 5.2E-38 253.7 12.5 183 11-226 404-588 (671)
4 COG2114 CyaA Adenylate cyclase 100.0 7.9E-30 1.7E-34 210.6 16.0 136 46-226 45-184 (227)
5 cd07302 CHD cyclase homology d 100.0 2E-29 4.4E-34 198.2 17.2 148 47-226 1-148 (177)
6 KOG3619|consensus 99.9 1.3E-28 2.9E-33 230.3 5.8 200 2-225 599-811 (867)
7 KOG3619|consensus 99.9 7.4E-28 1.6E-32 225.3 8.2 154 38-225 103-256 (867)
8 KOG1023|consensus 99.9 5.8E-26 1.2E-30 203.1 6.1 174 20-225 267-442 (484)
9 KOG3618|consensus 99.9 2.2E-25 4.7E-30 202.4 8.5 148 43-224 336-483 (1318)
10 KOG3618|consensus 99.9 4E-23 8.7E-28 187.8 2.6 195 6-226 1041-1241(1318)
11 cd07556 Nucleotidyl_cyc_III Cl 99.5 5.6E-13 1.2E-17 99.5 16.0 133 47-219 1-133 (133)
12 PF05165 GGDN: GGDN family; I 97.3 0.006 1.3E-07 50.6 11.9 60 45-104 125-185 (246)
13 COG2429 Archaeal GTP cyclohydr 96.6 0.035 7.6E-07 45.3 10.1 63 46-108 130-193 (250)
14 PRK10245 adrA diguanylate cycl 96.4 0.057 1.2E-06 47.8 11.8 60 45-105 234-293 (366)
15 COG2199 c-di-GMP synthetase (d 96.2 0.13 2.8E-06 40.2 11.5 61 45-106 49-109 (181)
16 PF00990 GGDEF: GGDEF domain; 96.1 0.021 4.6E-07 42.9 6.7 60 45-105 30-89 (161)
17 smart00267 GGDEF diguanylate c 96.0 0.16 3.5E-06 37.8 11.1 58 47-105 34-91 (163)
18 cd01949 GGDEF Diguanylate-cycl 95.3 0.31 6.7E-06 36.0 10.0 59 46-105 30-88 (158)
19 PRK02240 GTP cyclohydrolase II 95.1 0.28 6.1E-06 41.0 9.8 60 45-104 132-193 (254)
20 PRK09894 diguanylate cyclase; 95.0 0.55 1.2E-05 39.6 11.8 60 45-105 156-215 (296)
21 TIGR00254 GGDEF diguanylate cy 94.8 0.66 1.4E-05 34.8 10.9 59 46-105 32-90 (165)
22 PRK11059 regulatory protein Cs 94.7 0.61 1.3E-05 44.2 12.4 59 46-104 258-317 (640)
23 COG3706 PleD Response regulato 94.6 0.39 8.4E-06 43.4 10.1 122 44-213 298-422 (435)
24 PRK02240 GTP cyclohydrolase II 94.5 0.31 6.6E-06 40.7 8.6 55 50-104 4-61 (254)
25 TIGR02577 cas_TM1794_Crm2 CRIS 94.4 0.59 1.3E-05 43.0 11.3 119 45-214 341-481 (482)
26 PF10851 DUF2652: Protein of u 94.0 0.81 1.8E-05 33.4 8.8 40 169-211 69-108 (116)
27 PRK09966 putative inner membra 93.2 1.3 2.9E-05 39.2 11.0 59 46-105 277-335 (407)
28 PRK15426 putative diguanylate 93.0 1.6 3.4E-05 40.5 11.6 60 45-105 427-486 (570)
29 PRK14538 putative bifunctional 92.5 1.1 2.4E-05 43.9 10.1 99 46-183 203-301 (838)
30 PRK13561 putative diguanylate 91.5 1.9 4E-05 40.9 10.4 59 45-104 256-314 (651)
31 PRK11829 biofilm formation reg 90.5 2.5 5.3E-05 40.1 10.1 59 46-105 261-319 (660)
32 COG3887 Predicted signaling pr 90.5 4.3 9.2E-05 38.1 11.0 126 48-222 175-300 (655)
33 PRK10060 RNase II stability mo 90.3 2.3 4.9E-05 40.7 9.7 60 45-105 264-323 (663)
34 TIGR02578 cas_TM1811_Csm1 CRIS 89.1 4.8 0.0001 38.5 10.8 115 45-214 520-647 (648)
35 PRK09776 putative diguanylate 88.2 5.6 0.00012 39.9 11.2 59 45-104 694-752 (1092)
36 PRK11359 cyclic-di-GMP phospho 87.5 4.3 9.3E-05 39.1 9.6 59 45-104 401-459 (799)
37 PF05165 GGDN: GGDN family; I 83.2 5 0.00011 33.5 6.6 53 52-104 3-58 (246)
38 PRK09581 pleD response regulat 78.1 40 0.00087 29.7 11.4 59 46-105 322-380 (457)
39 PF11294 DUF3095: Protein of u 72.5 17 0.00036 32.4 7.1 119 46-211 25-155 (373)
40 COG2429 Archaeal GTP cyclohydr 50.9 53 0.0011 27.2 5.8 55 50-104 4-61 (250)
41 PF15530 Toxin_50: Putative to 43.5 15 0.00033 28.2 1.5 28 171-198 83-110 (168)
42 KOG1602|consensus 36.2 1.4E+02 0.0031 25.2 6.3 50 45-99 81-135 (271)
43 PRK14840 undecaprenyl pyrophos 28.6 97 0.0021 26.0 4.2 50 45-100 67-119 (250)
44 PF15617 C-C_Bond_Lyase: C-C_B 28.0 57 0.0012 28.7 2.8 53 171-226 165-222 (345)
45 PRK14828 undecaprenyl pyrophos 27.8 2.7E+02 0.0058 23.5 6.7 50 45-100 72-121 (256)
46 PF01255 Prenyltransf: Putativ 26.9 2.2E+02 0.0048 23.2 6.0 50 45-99 39-92 (223)
47 COG2450 Uncharacterized conser 26.6 1.4E+02 0.003 22.2 4.2 30 74-103 81-110 (124)
48 PRK14842 undecaprenyl pyrophos 26.0 1.2E+02 0.0026 25.4 4.3 50 45-100 53-105 (241)
49 PRK14838 undecaprenyl pyrophos 24.9 2.5E+02 0.0053 23.5 6.0 51 45-100 55-105 (242)
50 cd00475 CIS_IPPS Cis (Z)-Isopr 24.4 2.5E+02 0.0054 23.0 5.9 51 45-100 45-97 (221)
51 PRK14834 undecaprenyl pyrophos 23.5 1.8E+02 0.0039 24.4 4.9 50 45-99 59-110 (249)
52 PF07045 DUF1330: Protein of u 23.4 2.1E+02 0.0045 18.2 5.5 32 73-105 3-34 (65)
53 PRK14833 undecaprenyl pyrophos 21.7 1.5E+02 0.0032 24.7 4.0 49 45-99 49-100 (233)
54 PRK14830 undecaprenyl pyrophos 21.5 1.7E+02 0.0037 24.6 4.4 49 46-100 68-119 (251)
55 PRK14841 undecaprenyl pyrophos 20.5 3.5E+02 0.0075 22.4 6.0 51 45-100 48-100 (233)
56 PRK10240 undecaprenyl pyrophos 20.2 1.9E+02 0.0041 23.9 4.4 50 45-100 38-90 (229)
57 PRK14839 undecaprenyl pyrophos 20.0 3.4E+02 0.0075 22.6 5.8 50 45-99 54-105 (239)
No 1
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=100.00 E-value=2.8e-33 Score=225.48 Aligned_cols=172 Identities=47% Similarity=0.742 Sum_probs=149.6
Q ss_pred hhhccccccccccc--cc-ccCCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcE
Q psy14005 23 LSGNINRVHLIPFV--DF-QVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDA 99 (226)
Q Consensus 23 l~~~~~~~~~~~~~--~~-~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~ 99 (226)
++..++|.++.+.+ +. .....++++++|||+||+|||.+++..+++++..+++.|+..+.+++++|||++.++.||+
T Consensus 9 ll~~~lP~~v~~~l~~g~~~~~~~~~~~~tvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~v~~~~Gd~ 88 (194)
T smart00044 9 LLDQLLPASVAESLKRGGSPVPAESYDNVTILFTDIVGFTTLSSEATPEQVVTLLNDLYSRFDRIIDRHGGYKVKTIGDA 88 (194)
T ss_pred HHHHhCCHHHHHHHHhCCCCccccccCeEEEEEeEhhhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeCCE
Confidence 34444444444433 22 3456778999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcchhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEee
Q psy14005 100 YMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGI 179 (226)
Q Consensus 100 ~la~fg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi 179 (226)
+|++||.+.... .+++.+|+.+|++++..+..++... ...++++||||
T Consensus 89 ~l~~F~~~~~~~-------------------------------~~~a~~a~~~al~l~~~~~~~~~~~-~~~~l~~riGi 136 (194)
T smart00044 89 YMVVSGLPTEAL-------------------------------VDHAELAADEALDMVESLKTVLSQH-RGNGLRVRIGI 136 (194)
T ss_pred EEEEECCCCCcc-------------------------------hHHHHHHHHHHHHHHHHHHHHHhhc-cCCCeeEEEEE
Confidence 999999987763 2789999999999999998886433 36789999999
Q ss_pred ecceeEEeeecCCCCceeEeCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 180 NTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 180 ~~G~v~~g~vG~~~~~~~v~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
|+|++++|.+|...++|+++|++||.|+||++.+++|+|+||+++|+
T Consensus 137 h~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~~ 183 (194)
T smart00044 137 HTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETYS 183 (194)
T ss_pred eccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeEEECHHHHH
Confidence 99999999999987789999999999999999999999999999874
No 2
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=100.00 E-value=7.5e-34 Score=226.65 Aligned_cols=152 Identities=34% Similarity=0.591 Sum_probs=138.7
Q ss_pred CCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhh
Q psy14005 41 PAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISF 120 (226)
Q Consensus 41 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~ 120 (226)
|.+++++++|||+||+|||.+++..+++++..++|.|+..+.+++.+|||.++++.||++|++||.+....
T Consensus 2 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~Gd~~~~~f~~~~~~~--------- 72 (184)
T PF00211_consen 2 YSEQYRNVTVLFADIVGFTDLTEQLDPEELVRLLNDFFSSLDRIVKQHGGEIIKFIGDGVMAVFGLPEPDE--------- 72 (184)
T ss_dssp EEEEEEEEEEEEEEETTHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEETTEEEEEESSSSCHC---------
T ss_pred CccccCeEEEEEEEecCcHHHHHhCCchhHHHHHHHHHHHhhhccccccccccccccceeEEEeccccccc---------
Confidence 34678999999999999999999999999999999999999999999999999999999999999995555
Q ss_pred hhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeC
Q psy14005 121 YIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFG 200 (226)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G 200 (226)
+++..|+++|+++.+.+++++... ..++++|||||+|++++|.+|..+++|++||
T Consensus 73 -----------------------~~~~~a~~~al~~~~~~~~~~~~~--~~~~~~rIGI~~G~v~~g~~G~~~~~~~v~G 127 (184)
T PF00211_consen 73 -----------------------DAAERAVQFALALLEALERLNKES--GPPLSVRIGIHTGPVVVGVVGSRRPEYDVFG 127 (184)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHH--HSS-EEEEEEEEEEEEEEEEESSSEEEEEES
T ss_pred -----------------------cccccccccccchhhccccccccc--ceeeeeeccccccccccccccCcccceeeee
Confidence 889999999999999998776433 3669999999999999999996666999999
Q ss_pred cHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 201 DTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 201 ~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
++||.|+||+++|++++|+||+++|+
T Consensus 128 ~~vn~Aarl~~~a~~~~i~vs~~v~~ 153 (184)
T PF00211_consen 128 DAVNIAARLESLAPPGQILVSEEVYD 153 (184)
T ss_dssp HHHHHHHHHHHTSSTTSEEEEHHHHH
T ss_pred hhhhhhHHHHHhhcccccccCHHHHH
Confidence 99999999999999999999999873
No 3
>KOG4171|consensus
Probab=100.00 E-value=2.4e-33 Score=253.73 Aligned_cols=183 Identities=47% Similarity=0.733 Sum_probs=166.8
Q ss_pred hccCCCcCCchhhhhccccccccccc--ccccCCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy14005 11 SELKPDESYPHDLSGNINRVHLIPFV--DFQVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY 88 (226)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~ 88 (226)
++++..++-...|+..++|..|+..+ ++...+.++.+|||||+||++||.++..+.|.+++.+||.+|..+++++.-+
T Consensus 404 ~~Le~EKkkTd~LLy~mlP~~VA~qLr~g~~v~a~~f~~vTilFsdIv~Ft~ic~~ctp~~vV~~LN~lyt~fD~~i~~~ 483 (671)
T KOG4171|consen 404 RELEEEKKKTDTLLYSMLPRSVAQQLRQGESVDAKEFDDVTILFSDIVGFTAICSQCTPMQVVNMLNELYTRFDRIIDTH 483 (671)
T ss_pred HHHHHHHhhHHHHHHHhCCHHHHHHHHcCCCcCccccCceEEEEeccchHHhHhhccCcHHHHHHHHHHHHHHHHhhccc
Confidence 33444444457888888888888755 6777888899999999999999999999999999999999999999999999
Q ss_pred CcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCC
Q psy14005 89 DVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHR 168 (226)
Q Consensus 89 gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~ 168 (226)
+++++.++||+||++.|+|.... .||..+|.+||.+....++...+.
T Consensus 484 ~VYKVETIGDaYm~vsG~P~~~~--------------------------------~HAe~i~~~AL~Mm~~ak~v~~p~- 530 (671)
T KOG4171|consen 484 DVYKVETIGDAYMVVSGLPDASD--------------------------------YHAEHIADLALGMMEEAKEVVSPV- 530 (671)
T ss_pred CeEEEeeccchheeecCCCCCCh--------------------------------hHHHHHHHHHHHHHHHhhhhcCcC-
Confidence 99999999999999999999988 999999999999999999886543
Q ss_pred CCCceeEEEeeecceeEEeeecCCCCceeEeCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 169 PNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 169 ~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
.+.++.+|||||+|+|++|+||...++|.+||++||+|+|+|+.+.|+.|.||+.+|+
T Consensus 531 ~~~pi~iRiGIHsG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~ 588 (671)
T KOG4171|consen 531 TGEPIQIRIGIHSGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYR 588 (671)
T ss_pred CCCceEEEEEeccCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999874
No 4
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.97 E-value=7.9e-30 Score=210.58 Aligned_cols=136 Identities=27% Similarity=0.451 Sum_probs=119.7
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhhhcc
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNI 125 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~~~~ 125 (226)
+++|+||+||+|||.+++..+++++..+++.|+..+..++..|||.++|++||++|++||.|....
T Consensus 45 ~~vtilfaDi~g~T~l~~~~~~~~~~~ll~~~~~~~~~~v~~~gG~v~k~iGD~~la~F~~p~~~~-------------- 110 (227)
T COG2114 45 RRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFIGDGFLAVFGRPSPLE-------------- 110 (227)
T ss_pred ceEEEEEEeeccchHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecceEEEEeCCCCCcH--------------
Confidence 799999999999999999999999999999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCCccCCCCccchHHHHHHHHH----HHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeCc
Q psy14005 126 GSFGGLGTKGFFRPFSGTLHVGEIATMSL----DLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGD 201 (226)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al----~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~ 201 (226)
+|+.|+. ++.....+.+.. . +++|||||+|+++.|.+|+ |+++|+
T Consensus 111 ----------------------~A~~~a~~~~~~~~~~~~~~~~~----~-l~~riGi~~G~vv~~~~g~----~~~~G~ 159 (227)
T COG2114 111 ----------------------DAVACALDLQLALRNPLARLRRE----S-LRVRIGIHTGEVVVGNTGG----YTVVGS 159 (227)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHhhccCc----C-eeEEEEEEeecEEEEeecC----eeEech
Confidence 3444444 555555544322 1 9999999999999999988 999999
Q ss_pred HHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 202 TINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 202 ~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
+||+|+|||++|++++|++|+++|+
T Consensus 160 ~VN~AaRLe~~a~~g~i~iS~~~~~ 184 (227)
T COG2114 160 AVNQAARLESLAKPGQVLLSEATYD 184 (227)
T ss_pred HhHHHHHHHHhcCCCeEEEcHHHHH
Confidence 9999999999999999999999873
No 5
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.97 E-value=2e-29 Score=198.16 Aligned_cols=148 Identities=36% Similarity=0.585 Sum_probs=139.0
Q ss_pred cEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhhhccC
Q psy14005 47 SVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNIG 126 (226)
Q Consensus 47 ~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~~~~~ 126 (226)
++++||+||+|||.+++..+++++..+++.++..+.+++..|||++.++.||+++++|+.+....
T Consensus 1 ~~~il~~di~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~gd~~~~~f~~~~~~~--------------- 65 (177)
T cd07302 1 EVTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGAHE--------------- 65 (177)
T ss_pred CEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCceEEEEeCCCCCch---------------
Confidence 48999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeCcHHHHH
Q psy14005 127 SFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTA 206 (226)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~~Vn~A 206 (226)
+++.+|+.||++++..+.+++........+.+|||||+|++++|.+|...+.|+++|++||.|
T Consensus 66 -----------------~~~~~A~~~a~~i~~~~~~~~~~~~~~~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A 128 (177)
T cd07302 66 -----------------DHAERAVRAALEMQEALAELNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLA 128 (177)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEecceEEEEecCCCCcceeEecchHhHH
Confidence 899999999999999999887554556789999999999999999999966999999999999
Q ss_pred HHHhhcCCCCcEEEeccccC
Q psy14005 207 SRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 207 arl~~~a~~g~i~vs~~~~~ 226 (226)
+||++.+++++|++|+++|+
T Consensus 129 ~rl~~~a~~~~i~vs~~~~~ 148 (177)
T cd07302 129 ARLESLAKPGQILVSEATYE 148 (177)
T ss_pred HHHHhcCCCCEEEECHHHHH
Confidence 99999999999999999874
No 6
>KOG3619|consensus
Probab=99.95 E-value=1.3e-28 Score=230.28 Aligned_cols=200 Identities=28% Similarity=0.496 Sum_probs=173.4
Q ss_pred hhhhHHHHhhccCCCcCCchhhhhccccccccccc------ccccCCcccCcEEEEEEecCCchhhcCCC----CHHHHH
Q psy14005 2 KKKKKKQERSELKPDESYPHDLSGNINRVHLIPFV------DFQVPAENFDSVTIYFSDIVGFTNISADS----SPMEVV 71 (226)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~vtvlf~di~~ft~l~~~~----~~~~~~ 71 (226)
||.|+++|+++.+..+..++.+++|++|.|+++-+ +.++|.+.+.+|+|||+.|.||.++..+. ...+..
T Consensus 599 Wk~q~~~E~ee~e~m~~~Nr~LLeNiLPaHVA~HFl~~~~r~~eLY~qSy~~VgVMFASipnF~dFYsE~d~NneGlECL 678 (867)
T KOG3619|consen 599 WKVQAQEEKEEMETMQNLNRLLLENILPSHVAAHFLGSKKRNEELYHQSYDCVGVMFASIPNFKDFYSECDVNNEGLECL 678 (867)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhcccchHHHHHhhhceEEEEEEecCCcceeeeeecCCcccchHH
Confidence 99999999999999999999999999999999944 34778889999999999999997765554 357889
Q ss_pred HHHHHHHHHHHHHHH--h-cCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhhhccCCCCCCCCCCccCCCCccchHHH
Q psy14005 72 NMLNTLYKLFDSRIR--K-YDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGE 148 (226)
Q Consensus 72 ~~l~~~~~~~~~~i~--~-~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (226)
++||+.+..|++++. + .+..++|++|-.|||+.|+......... .+.....|...
T Consensus 679 RlLNEIIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~~~~----------------------~~~~~~~h~~~ 736 (867)
T KOG3619|consen 679 RLLNEIIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQEND----------------------QSLRQWSHLGA 736 (867)
T ss_pred HHHHHHHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhhccC----------------------cchhHHhhHHH
Confidence 999999999999998 4 4679999999999999999655441110 00022478888
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeCcHHHHHHHHhhcCCCCcEEEecccc
Q psy14005 149 IATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSFFIVTIVM 225 (226)
Q Consensus 149 a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~~Vn~Aarl~~~a~~g~i~vs~~~~ 225 (226)
.+.+|+++...++.+| .....+..+||||+.|++++|++|.++++||+||.+||+|+||++.+.+|.|+|+++|+
T Consensus 737 l~eFAlal~~~L~~IN--~~SfNnF~LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTEEt~ 811 (867)
T KOG3619|consen 737 LVEFALALMHKLDEIN--RHSFNNFELRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTEETA 811 (867)
T ss_pred HHHHHHHHHHHHHhhh--HHhhccceeeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecHHHH
Confidence 9999999999999998 34446799999999999999999999999999999999999999999999999999985
No 7
>KOG3619|consensus
Probab=99.94 E-value=7.4e-28 Score=225.28 Aligned_cols=154 Identities=29% Similarity=0.534 Sum_probs=145.6
Q ss_pred cccCCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcc
Q psy14005 38 FQVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTA 117 (226)
Q Consensus 38 ~~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a 117 (226)
.+++.+.+.+|+++|+||+|||.++..+++++++++||++|..|+++...+++..+|+.||+|.++.|+|....
T Consensus 103 ~~iy~~~h~nVSIl~adivgft~l~s~~saqelv~~LneLf~rfd~lA~~~~clRiKiLGdcyyCvsglp~~~~------ 176 (867)
T KOG3619|consen 103 HKLYIQRHDNVSILFADIVGFTQLASQCSAQELVKVLNELFARFDRLAAENHCLRIKILGDCYYCVSGLPEARP------ 176 (867)
T ss_pred chhheeeccchHhhHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcceEeeeeecceeEEecCCCCCCh------
Confidence 35667889999999999999999999999999999999999999999999999999999999999999997776
Q ss_pred hhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCcee
Q psy14005 118 ISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYC 197 (226)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~ 197 (226)
+||..++.+.++|...++.+. ...+.++++|||||+|+|.||++|..+|+||
T Consensus 177 --------------------------dHA~~~v~mgl~Mi~aI~~vr--~at~~dvnmrvGihsG~Vl~GvlG~~kwq~D 228 (867)
T KOG3619|consen 177 --------------------------DHAVCCVEMGLDMIKAIKQVR--EATGVDVNMRVGIHSGSVLCGVLGLRKWQYD 228 (867)
T ss_pred --------------------------hHHHHHHHHHHHHHHHHHHHH--HHhCCCCceEEEEecCceeecccccceeeee
Confidence 999999999999999999886 3455779999999999999999999999999
Q ss_pred EeCcHHHHHHHHhhcCCCCcEEEecccc
Q psy14005 198 LFGDTINTASRMESAGDLPSFFIVTIVM 225 (226)
Q Consensus 198 v~G~~Vn~Aarl~~~a~~g~i~vs~~~~ 225 (226)
|||..|.+|.+||+.+.||.|+||++|.
T Consensus 229 Vws~dv~lAn~mEs~G~pgrVhis~~Tl 256 (867)
T KOG3619|consen 229 VWSNDVTLANHMEAGGVPGRVHISKATL 256 (867)
T ss_pred eccchhhhhhhhhhcCCCceeEechhHH
Confidence 9999999999999999999999999874
No 8
>KOG1023|consensus
Probab=99.92 E-value=5.8e-26 Score=203.09 Aligned_cols=174 Identities=56% Similarity=0.879 Sum_probs=161.9
Q ss_pred chhhhhccccccccccc--ccccCCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeC
Q psy14005 20 PHDLSGNINRVHLIPFV--DFQVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIG 97 (226)
Q Consensus 20 ~~~l~~~~~~~~~~~~~--~~~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~G 97 (226)
-..|+..++|..|+..+ +....++.+.++|++|.||++||.++....|.+++.++|..|..++.++++|+++++..+|
T Consensus 267 ~d~LL~~mLP~~VA~~lk~G~~v~pe~~~~vti~fsDiv~fT~l~~~~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiG 346 (484)
T KOG1023|consen 267 TDTLLGQMLPKSVAESLKLGKTVDPESFDSVTIYFSDIVGFTVLSSNSTPIQVVTLLNDLYTTFDRIIDKHDVYKVETIG 346 (484)
T ss_pred HHHHHHHhcCHHHhhHhhcCCcCCccccCceeeeeHHHHHHHHHHhcCCCceeeeeccchHHhhhhcccccCCeeEeccC
Confidence 35677777777777755 5677788899999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCCCCCCCCCCcchhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEE
Q psy14005 98 DAYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRV 177 (226)
Q Consensus 98 D~~la~fg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~ri 177 (226)
|+||++.|+|..+. ..|+..++..++++...++.+..++.+..++++||
T Consensus 347 DaYmvvSglp~~n~-------------------------------~~H~~eia~msl~~~~~~~~f~i~H~P~~~l~iRi 395 (484)
T KOG1023|consen 347 DAYMVVSGLPIRNG-------------------------------YRHAREIASMALGLRSFLESFSLPHRPWEKLRLRI 395 (484)
T ss_pred cceeecccCceecH-------------------------------hHHHHHHHHHHHHHHHHHhccCCCCCCchhhheee
Confidence 99999999999888 46899999999999999999999999999999999
Q ss_pred eeecceeEEeeecCCCCceeEeCcHHHHHHHHhhcCCCCcEEEecccc
Q psy14005 178 GINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSFFIVTIVM 225 (226)
Q Consensus 178 Gi~~G~v~~g~vG~~~~~~~v~G~~Vn~Aarl~~~a~~g~i~vs~~~~ 225 (226)
|+|+|++++|++|...+.|..+|++||.|+|+++.++ +.|.+|+++.
T Consensus 396 g~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~ 442 (484)
T KOG1023|consen 396 GFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAK 442 (484)
T ss_pred ccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHH
Confidence 9999999999999999999999999999999999999 9999998753
No 9
>KOG3618|consensus
Probab=99.92 E-value=2.2e-25 Score=202.41 Aligned_cols=148 Identities=31% Similarity=0.549 Sum_probs=139.3
Q ss_pred cccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhh
Q psy14005 43 ENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYI 122 (226)
Q Consensus 43 ~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~ 122 (226)
+...+|+|||+||+|||+++..-++++++.+||++|..|+++++..|++++.+.||+|.|+-|.|++..
T Consensus 336 ~~menVSILFADIvGFTkMSsnKsA~~LV~lLNDLFgRFD~LC~l~gcEKISTLGDCYYCVaGCPEPra----------- 404 (1318)
T KOG3618|consen 336 QQMENVSILFADIVGFTKMSSNKSAHALVGLLNDLFGRFDRLCELTGCEKISTLGDCYYCVAGCPEPRA----------- 404 (1318)
T ss_pred hhhhhhhhhhhhhhchhhccccccHHHHHHHHHHHHHHHHHHHHhcCcchhccccceeeeecCCCCCcc-----------
Confidence 345789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeCcH
Q psy14005 123 RNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDT 202 (226)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~~ 202 (226)
+|+.+.++++|+|+.+++++-... ...+++|+|||+|.|+||.+|..+..||||...
T Consensus 405 ---------------------DHA~ccvEMGLgMI~AirqFd~~r--~e~VnMRVGvHTGtVlCGivGtrRfKFDVwSND 461 (1318)
T KOG3618|consen 405 ---------------------DHAYCCVEMGLGMIKAIRQFDQER--KEMVNMRVGVHTGTVLCGIVGTRRFKFDVWSND 461 (1318)
T ss_pred ---------------------cceeeehhhcchHHHHHHHHHHHh--hcccceEEEEecceEEeeeeecceEeeeeccCc
Confidence 899999999999999999986333 356899999999999999999998899999999
Q ss_pred HHHHHHHhhcCCCCcEEEeccc
Q psy14005 203 INTASRMESAGDLPSFFIVTIV 224 (226)
Q Consensus 203 Vn~Aarl~~~a~~g~i~vs~~~ 224 (226)
||+|..||+.+.+|+|+||++|
T Consensus 462 V~LAN~MEssGvag~VHiSeaT 483 (1318)
T KOG3618|consen 462 VNLANLMESSGVAGKVHISEAT 483 (1318)
T ss_pred chHHHHHHhcCCCcceEeeHHH
Confidence 9999999999999999999986
No 10
>KOG3618|consensus
Probab=99.87 E-value=4e-23 Score=187.81 Aligned_cols=195 Identities=28% Similarity=0.382 Sum_probs=165.3
Q ss_pred HHHHhhccCCCcCCchhhhhccccccccccc-ccccCCcccCcEEEEEEecCCchhhcCCC--CHHHHHHHHHHHHHHHH
Q psy14005 6 KKQERSELKPDESYPHDLSGNINRVHLIPFV-DFQVPAENFDSVTIYFSDIVGFTNISADS--SPMEVVNMLNTLYKLFD 82 (226)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~vtvlf~di~~ft~l~~~~--~~~~~~~~l~~~~~~~~ 82 (226)
+.+.+.+....+....-|++++.|.|+++.+ ....|.+.+.++.|+|+.|+||.++-+.. +.+++.++||++...|+
T Consensus 1041 A~~d~~riQ~mrdQADwLL~NiIP~HvaE~LK~~~kYSeNH~~~gviFASIvNfnemYeEnyeGGkEflRVLNElIGDFD 1120 (1318)
T KOG3618|consen 1041 ADLDRTRIQSMRDQADWLLRNIIPYHVAEQLKVSQKYSENHDSGGVIFASIVNFNEMYEENYEGGKEFLRVLNELIGDFD 1120 (1318)
T ss_pred hchhHHHHHHHHHHHHHHHhccchHHHHHHhhccccccccCccceEEEEEeccHHHHHHHhhhchHHHHHHHHHHhccHH
Confidence 3444555555566677899999999999977 46788899999999999999999998764 78999999999999999
Q ss_pred HHHHhc---CcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHH
Q psy14005 83 SRIRKY---DVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVG 159 (226)
Q Consensus 83 ~~i~~~---gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~ 159 (226)
+++.+- .-+++|++|-.|||+.|+......+- .+ ..+|-....++|+++++.
T Consensus 1121 ELLsrPdf~~iEKIKTIG~tyMAASGLnp~~~~~~---------------------~h----p~EHl~~l~eFa~amq~V 1175 (1318)
T KOG3618|consen 1121 ELLSRPDFSSIEKIKTIGATYMAASGLNPAQAQDG---------------------SH----PQEHLQILFEFAKAMQRV 1175 (1318)
T ss_pred HHhccccchhhHHHhhhhHHHHHhcCCChHHccCC---------------------CC----hHHHHHHHHHHHHHHHHH
Confidence 999884 47899999999999999966544110 00 036788899999999999
Q ss_pred hhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 160 IEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 160 ~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
+..+|. ..-..++.+|+|.+.|+|++|++|+.+.-||+|||+||+|+||-+.+-+++|.||++.|+
T Consensus 1176 vd~FN~-dlL~Fnf~lrvG~NiGpvTAGVIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~ 1241 (1318)
T KOG3618|consen 1176 VDDFNN-DLLWFNFKLRVGFNIGPVTAGVIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVSEESYR 1241 (1318)
T ss_pred HHHhhh-hhhheeeeEEeeccccCccccccccceeeehhhcchhhhhhhccccCCcceeEecHHHHH
Confidence 999983 334477999999999999999999999999999999999999999999999999998763
No 11
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=99.55 E-value=5.6e-13 Score=99.52 Aligned_cols=133 Identities=40% Similarity=0.645 Sum_probs=113.8
Q ss_pred cEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhhhccC
Q psy14005 47 SVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNIG 126 (226)
Q Consensus 47 ~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~~~~~ 126 (226)
+++++++||.+|+.+.+..+....-++++.+...+.+++..+++.+.++.||.|+++|..
T Consensus 1 ~~~ll~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~~~~~~~r~~~d~f~~l~~~-------------------- 60 (133)
T cd07556 1 PVTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGL-------------------- 60 (133)
T ss_pred CEEEEEEEchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEeecceEEEEECc--------------------
Confidence 368999999999999999999999999999999999999999999999999999999943
Q ss_pred CCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeCcHHHHH
Q psy14005 127 SFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTA 206 (226)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~~Vn~A 206 (226)
....++..++..+...+...... ....+.++||+++|++..+..|. +..+..+|+.++.|
T Consensus 61 -----------------~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~ig~~~g~~~~~~~~~-~~~~~~~~~~~~~a 120 (133)
T cd07556 61 -----------------DHPAAAVAFAEDMREAVSALNQS--EGNPVRVRIGIHTGPVVVGVIGS-RPQYDVWGALVNLA 120 (133)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHhc--cCCceEEEEEEecccEEEEeccC-CccceEEcHHHHHH
Confidence 23456777788888777654322 33458899999999999998888 55888999999999
Q ss_pred HHHhhcCCCCcEE
Q psy14005 207 SRMESAGDLPSFF 219 (226)
Q Consensus 207 arl~~~a~~g~i~ 219 (226)
++++..+++++|.
T Consensus 121 ~~a~~~a~~~~i~ 133 (133)
T cd07556 121 SRMESQAKAGQVL 133 (133)
T ss_pred HHHHhcCCCCCcC
Confidence 9999999998763
No 12
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=97.30 E-value=0.006 Score=50.57 Aligned_cols=60 Identities=25% Similarity=0.254 Sum_probs=49.6
Q ss_pred cCcEEEEEEecCCch-hhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 45 FDSVTIYFSDIVGFT-NISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 45 ~~~vtvlf~di~~ft-~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
...|+|.-.||.|+| .+++..++-+....+...+..+.+.+..+||..--.-||.+|++.
T Consensus 125 d~~v~iAH~DI~d~T~~~Td~~~~ydt~~~I~~l~~~l~~~~~~~G~L~fylGGDNi~~v~ 185 (246)
T PF05165_consen 125 DGYVQIAHFDINDSTGTYTDEESPYDTYLEIEDLYAKLMKYLEKYGSLAFYLGGDNIMAVC 185 (246)
T ss_dssp S--EEEEEEEETTHHHHTTTTS-HHHHHHHHHHHHHHHHHHHHTTT---EEEETTEEEEE-
T ss_pred CCceEEEEEeeeccchhhhcccChHHHHHHHHHHHHHHHHHHHhcCCEEEEecCceEEEEC
Confidence 456999999999999 999999999999999999999999999999988888899999988
No 13
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.035 Score=45.27 Aligned_cols=63 Identities=19% Similarity=0.126 Sum_probs=56.1
Q ss_pred CcEEEEEEecCCch-hhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCC
Q psy14005 46 DSVTIYFSDIVGFT-NISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQ 108 (226)
Q Consensus 46 ~~vtvlf~di~~ft-~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~ 108 (226)
.-+++.-.||.+.| ..++..+|-+....++..+..+.+.++++|+..--.-||.+|++++.-+
T Consensus 130 g~v~IAH~Dvn~~Tgt~Td~~~~~~t~~~I~~~~~~L~~~l~k~gal~fflGGDN~ma~~p~~s 193 (250)
T COG2429 130 GYVQIAHFDVNDATGTYTDIVSPYDTYTEIQRVYATLMRFLEKIGALLFFLGGDNIMAVCPGLS 193 (250)
T ss_pred CceEEEEEeeecchhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcEEEEecCcceEEECCCCC
Confidence 45889999999999 9999999999999999999999999999988877777999999995543
No 14
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=96.42 E-value=0.057 Score=47.77 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=51.0
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
.++.+++++||.+|..+.+..+.+.--.+|..+...+.+.+.. +..+.++.||.|.++..
T Consensus 234 ~~~~~ll~idId~Fk~INd~~Gh~~GD~lL~~vA~~L~~~l~~-~d~laRlggdeFavll~ 293 (366)
T PRK10245 234 HRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRG-SDVIGRFGGDEFAVIMS 293 (366)
T ss_pred CCCEEEEEEECCcchHHHHhhCchHHHHHHHHHHHHHHHhCCC-CCEEEEEcCcEEEEEeC
Confidence 4568999999999999999999888888888888888777754 56788999999999983
No 15
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=96.16 E-value=0.13 Score=40.22 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=52.9
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGL 106 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~ 106 (226)
....+++++||.+|-.+-+..+...--.+|..+...+...+.... .+.++-||.|.+++..
T Consensus 49 ~~~~~l~~iDiD~Fk~iND~~Gh~~GD~vL~~va~~L~~~~~~~~-~~~R~gGdEF~i~l~~ 109 (181)
T COG2199 49 GEPLALLLLDLDHFKQINDTYGHAAGDEVLREVARRLRSNLREGD-LVARLGGDEFAVLLPG 109 (181)
T ss_pred CCCeEEEEEeCcCCccccccccchHHHHHHHHHHHHHHHhcCCCC-EEEEeccceeEEEeCC
Confidence 356999999999999999899988888888888888888887776 8899999999999943
No 16
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=96.14 E-value=0.021 Score=42.94 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=51.6
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
..+.++++++|.++..+....+.+..-.++..+...+.+.+.. +..+.++.+|.|++++.
T Consensus 30 ~~~~~l~~i~i~~~~~l~~~~G~~~~~~~l~~i~~~L~~~~~~-~~~~~r~~~~~f~il~~ 89 (161)
T PF00990_consen 30 GEPFALVLIDIDNLDELNEKYGYEVGDEILRQIAKRLKKQLRE-SDILARLGDDEFAILLP 89 (161)
T ss_dssp TSEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSEEEEEETTEEEEEEE
T ss_pred CCCceEEEEeccccccccccccccccccccccccccccccccc-ccccccccchheeeccc
Confidence 4679999999999999999888888888888888888877776 67888999999999873
No 17
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=96.03 E-value=0.16 Score=37.81 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=50.3
Q ss_pred cEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 47 SVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 47 ~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
.+++++++|.++..+....+.+..-.++..+...+.+.+.. +..+.+..+|.|+++..
T Consensus 34 ~~~l~~i~i~~~~~~~~~~g~~~~~~~l~~i~~~l~~~~~~-~~~~~r~~~~~f~ii~~ 91 (163)
T smart00267 34 PFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRP-GDLLARLGGDEFALLLP 91 (163)
T ss_pred eEEEEEEEccccchhhhccCchhHHHHHHHHHHHHHHhcCC-CCEEEEecCceEEEEec
Confidence 48999999999999999999888888999988888887765 46788888999998883
No 18
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=95.27 E-value=0.31 Score=36.02 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=50.4
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
...++++++|.++..+....+.+..-.++..+...+.+.+.. ++.+.+..++.|+++..
T Consensus 30 ~~~~l~~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~f~~l~~ 88 (158)
T cd01949 30 RPLALLLIDIDHFKQINDTYGHAAGDEVLKEVAERLRSSLRE-SDLVARLGGDEFAILLP 88 (158)
T ss_pred CeEEEEEEEchhhhHHHHhhChHhHHHHHHHHHHHHHHhCCC-CCEEEEecCCeEEEEeC
Confidence 458899999999999999999888888899988888887755 56788888899988883
No 19
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=95.07 E-value=0.28 Score=40.97 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=49.2
Q ss_pred cCcEEEEEEecCCchhhcC-CCCHHHHHHHHHHHHHHHHHHHHh-cCcEEEeEeCcEEEEEe
Q psy14005 45 FDSVTIYFSDIVGFTNISA-DSSPMEVVNMLNTLYKLFDSRIRK-YDVYKVETIGDAYMVVS 104 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~-~~~~~~~~~~l~~~~~~~~~~i~~-~gG~i~k~~GD~~la~f 104 (226)
-..|+|.-.||.++|.... ..++-+..-.++..+..+.+.+.+ +|+.---+-||.+|+++
T Consensus 132 ~~~v~iaH~Di~~~T~~~td~~~~~dt~~~i~~~~~~l~~~~~~~~g~l~ff~GGDN~~~~~ 193 (254)
T PRK02240 132 DGYVQIAHFDINDITGTYTDIENAFDTFLEIEQAYLALMRELRKAHDALSFFVGGDNFMAPC 193 (254)
T ss_pred CCceEEEEEeeecccceeeccCchhHHHHHHHHHHHHHHHHHHHhcCcEEEEecCceEEEEC
Confidence 4569999999999999855 458888877788888777777777 88877767799999998
No 20
>PRK09894 diguanylate cyclase; Provisional
Probab=94.96 E-value=0.55 Score=39.57 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=50.2
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
.+..+++++||.+|..+.+.++.+..-.+|..+...+.+.+.. +..+.++.||.|++++.
T Consensus 156 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~l~~~~~~-~~~~~R~~g~~F~ill~ 215 (296)
T PRK09894 156 PQNLYLALLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRD-YETVYRYGGEEFIICLK 215 (296)
T ss_pred CCcEEEEEEECccccHHHHccCcHHHHHHHHHHHHHHHHhCCC-CCEEEEEcCCeEEEEeC
Confidence 3568999999999999999999888888888888888777654 45788999999988873
No 21
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=94.85 E-value=0.66 Score=34.79 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=48.6
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
...+++.++|.+|..+....+....-.++..+...+.+.+. .+..+.+..++.|++++.
T Consensus 32 ~~~~l~~i~i~~~~~i~~~~G~~~~~~ll~~~a~~l~~~~~-~~~~i~r~~~~~f~il~~ 90 (165)
T TIGR00254 32 RSFSVLMIDIDNFKKINDTLGHDVGDEVLREVARILQSSVR-GSDVVGRYGGEEFVVILP 90 (165)
T ss_pred CceEEEEEeccchhHHHHhhChhhHHHHHHHHHHHHHHhcC-cCCEEEEecCCeEEEEeC
Confidence 45789999999999999988888888888888888877773 456788888999988873
No 22
>PRK11059 regulatory protein CsrD; Provisional
Probab=94.66 E-value=0.61 Score=44.25 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhc-CcEEEeEeCcEEEEEe
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY-DVYKVETIGDAYMVVS 104 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~-gG~i~k~~GD~~la~f 104 (226)
...+++++||.+|..+-+..+...--.+|..+-..+...+.++ +..+.++-||.|.++.
T Consensus 258 ~~~~ll~idid~fk~iNd~~Gh~~gD~~L~~va~~L~~~~~~~~~~~~aR~ggdeFaill 317 (640)
T PRK11059 258 AHGVVMLIRLPDFDLLQEEWGESQVEELLFELINLLSTFVMRYPGALLARYSRSDFAVLL 317 (640)
T ss_pred CcEEEEEEECchHHHHHHhcChHHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCEEEEEe
Confidence 3688999999999999999999988889999999999888876 5677899999998887
No 23
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=94.56 E-value=0.39 Score=43.43 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=85.4
Q ss_pred ccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhhh
Q psy14005 44 NFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYIR 123 (226)
Q Consensus 44 ~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~~ 123 (226)
+.++.+++++||-+|-.+-+..++.--=++|..+-..+.+.+ +.-..+-++-|..|++++..
T Consensus 298 ~~~pls~~m~DID~FK~iNDt~GH~~GDevLr~vA~~L~~~v-r~~Dl~aRyGGEEF~vvlp~----------------- 359 (435)
T COG3706 298 EGRPLSLLMLDIDDFKEINDTYGHDVGDEVLRQVARRLRQTV-RGLDLVARYGGEEFAVVLPD----------------- 359 (435)
T ss_pred cCCCeeEEEEecccccccccccCCccHHHHHHHHHHHHHhhc-cccccceecCCeeEEEEecC-----------------
Confidence 367899999999999999888877666677788888888877 55567778888999888833
Q ss_pred ccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCC---CceeEEEeeecceeEEeeecCCCCceeEeC
Q psy14005 124 NIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPN---DKLEIRVGINTGPCVAGVVGTTMPRYCLFG 200 (226)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~---~~l~~riGi~~G~v~~g~vG~~~~~~~v~G 200 (226)
.+...|+..|=.|+..++.....+..+ ..+.+.|||+++.- ..+.+.
T Consensus 360 --------------------t~~~~Ai~iaerIr~~i~~~~~~~~~~~~~~~~TiSiGVa~~~p----------~~~~~~ 409 (435)
T COG3706 360 --------------------TDLEAAIAIAERIRQKINELPFVHELSREPLEVTISIGVAEGKP----------GEDSIE 409 (435)
T ss_pred --------------------CCHHHHHHHHHHHHHHHhcCCccccccccceEEEEEEEEEecCC----------CCCcHH
Confidence 335567777788888888776555443 34667777776542 222244
Q ss_pred cHHHHHHHHhhcC
Q psy14005 201 DTINTASRMESAG 213 (226)
Q Consensus 201 ~~Vn~Aarl~~~a 213 (226)
.-++.|.+.--.|
T Consensus 410 ~li~~AD~aLy~A 422 (435)
T COG3706 410 ELLKRADKALYKA 422 (435)
T ss_pred HHHHHHHHHHhHH
Confidence 4566666643333
No 24
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=94.48 E-value=0.31 Score=40.74 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=48.1
Q ss_pred EEEEecCCchhhcCCCCH---HHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 50 IYFSDIVGFTNISADSSP---MEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 50 vlf~di~~ft~l~~~~~~---~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
|..+.|.||-.|+..++| -++..+-..++..+.+.+.++||.+.-+-||.++++.
T Consensus 4 it~iqid~YgpWT~t~~prRE~dlQ~lQsrLya~L~~~~~~~ggl~Ff~RgDN~iavt 61 (254)
T PRK02240 4 ITLIQIDNYGPWTVTPNPRRESDLQALQSRLYADLAQQFGARDGYVFFTRFDNMIAVT 61 (254)
T ss_pred EEEEEecCCCcCcCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCEEEeccCceEEEEc
Confidence 556788999999999875 4566677888999999999999999999999999997
No 25
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.
Probab=94.44 E-value=0.59 Score=42.99 Aligned_cols=119 Identities=10% Similarity=-0.041 Sum_probs=85.2
Q ss_pred cCcEEEEEEecCCchhhcCCC------------------C---HHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEE
Q psy14005 45 FDSVTIYFSDIVGFTNISADS------------------S---PMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVV 103 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~------------------~---~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~ 103 (226)
..-++++.+|--+...+.... + ...+.+.|+.|+....+.+..++|.++-.-||-++++
T Consensus 341 ~~y~Ail~aDGD~mG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~aL~~f~~~~~~~v~~~~g~~VYaGGDDvlai 420 (482)
T TIGR02577 341 RPYYAILKADGDRMGKLLRGEIRPEEKERIHPKKVKNLTTPAAHVAFSRALAEFSLKAVKIVVNEHGELVYAGGDDVLAL 420 (482)
T ss_pred CceEEEEEccccchHHHHhCCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCcEEEE
Confidence 445899999998887766542 2 4778888999998888888888999999999999999
Q ss_pred eCCCCCCCCCCCcchhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCC-CCCceeEEEeeecc
Q psy14005 104 SGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHR-PNDKLEIRVGINTG 182 (226)
Q Consensus 104 fg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~-~~~~l~~riGi~~G 182 (226)
.+ ...|..+|.++.+.+.+...... .+..+.+..||...
T Consensus 421 ~p----------------------------------------~~~al~~a~~l~~~F~~~~~~~~~~~~~~T~SaGI~ia 460 (482)
T TIGR02577 421 LP----------------------------------------VDTALDVAKELRKEFRESLEKSLGGERGPTMSAGLLIV 460 (482)
T ss_pred cc----------------------------------------HHHHHHHHHHHHHHHHHHhhcccccCCCceEEEEEEEe
Confidence 83 34578888888888776542211 12335555554432
Q ss_pred eeEEeeecCCCCceeEeCcHHHHHHHHhhcCC
Q psy14005 183 PCVAGVVGTTMPRYCLFGDTINTASRMESAGD 214 (226)
Q Consensus 183 ~v~~g~vG~~~~~~~v~G~~Vn~Aarl~~~a~ 214 (226)
.. -..+....+.|..++..|+
T Consensus 461 h~-----------k~Pl~~~~~~a~ell~~AK 481 (482)
T TIGR02577 461 HH-----------KEPLYDALELARRLLKRAK 481 (482)
T ss_pred CC-----------CCcHHHHHHHHHHHHHHhc
Confidence 21 1456788889999888776
No 26
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=93.99 E-value=0.81 Score=33.36 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=32.4
Q ss_pred CCCceeEEEeeecceeEEeeecCCCCceeEeCcHHHHHHHHhh
Q psy14005 169 PNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMES 211 (226)
Q Consensus 169 ~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~~Vn~Aarl~~ 211 (226)
...++.+++=+|+|++..-.+|.-. -.+|..|-+|.||-.
T Consensus 69 ~~~~LsLKfV~H~Ge~~~~~Vk~~~---kL~G~dVI~aHrlLK 108 (116)
T PF10851_consen 69 QLINLSLKFVAHYGEVAQQKVKRFC---KLAGKDVIEAHRLLK 108 (116)
T ss_pred hhhcceEEEEEEeeeeeeeeecccc---hhcCchhhHhHHHHc
Confidence 3467999999999999888777543 467999999999844
No 27
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=93.16 E-value=1.3 Score=39.20 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=49.2
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
...+++++|+.+|..+-+.++.+..-.++..+...+.+.+.. +..+.++.||.|.+++.
T Consensus 277 ~~~~l~~i~id~f~~in~~~G~~~gd~~l~~~a~~L~~~~~~-~~~~~R~~~deF~ill~ 335 (407)
T PRK09966 277 KTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEFGGL-RHKAYRLGGDEFAMVLY 335 (407)
T ss_pred CceEEEEEECccchHHHhhhchHHHHHHHHHHHHHHHHhCCC-CCEEEEEccceEEEEEc
Confidence 457899999999999999999888888888888887766554 36778999999998883
No 28
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=92.99 E-value=1.6 Score=40.54 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=51.3
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
.+..+++++||.+|..+-+.++.+.--.+|..+...+...+.. ++.+.++-||.|+++..
T Consensus 427 ~~~~~l~~idid~fk~iNd~~G~~~GD~~L~~~a~~l~~~~~~-~~~~~R~ggdeF~ill~ 486 (570)
T PRK15426 427 QQPFSVIQLDLDHFKSINDRFGHQAGDRVLSHAAGLISSSLRA-QDVAGRVGGEEFCVVLP 486 (570)
T ss_pred CCcEEEEEEECcccCHhhHhhChHHHHHHHHHHHHHHHHhCCC-CCEEEeecCcEEEEEeC
Confidence 3558999999999999999999988888888888888877754 56788999999988873
No 29
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=92.49 E-value=1.1 Score=43.91 Aligned_cols=99 Identities=11% Similarity=0.175 Sum_probs=73.6
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhhhcc
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNI 125 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~~~~ 125 (226)
...++..+.|-||.+.....+..+-..+...+-..+.+-+..|+|.+-++..|.|++++..
T Consensus 203 ~~~v~g~i~iDNyde~~~~~~~~~~s~l~~~i~~~l~~~~~~~~~~~r~~~~dry~~~~~~------------------- 263 (838)
T PRK14538 203 KTLALAMITFDNLEESLIRYDLSEQSQIQGEYLSALSDFIEPYEGYLKQLIDDRFLLLINR------------------- 263 (838)
T ss_pred cCcEEEEEEeeCHHHHhcccchHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCcEEEEEEH-------------------
Confidence 3466777777788888888877777777778888899999999999999999999999922
Q ss_pred CCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecce
Q psy14005 126 GSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGP 183 (226)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~ 183 (226)
..-.....-=+.+++.+++.+. ....++.+.||+..|.
T Consensus 264 ------------------~~l~~~~~~kF~iLd~ir~~~~--~~~~~vTLSiGig~g~ 301 (838)
T PRK14538 264 ------------------QNLDKMIENKFSILDTIRNISH--KYQLKVTLSMGIACWN 301 (838)
T ss_pred ------------------HHHHHHHHhCCcHHHHHHHhhc--CCCCceEEEEEEeCCC
Confidence 2333344444667777776652 2336688888888873
No 30
>PRK13561 putative diguanylate cyclase; Provisional
Probab=91.52 E-value=1.9 Score=40.93 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=50.9
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
....+++++|+.+|..+-+..+.+..-.+|..+...+.+.+.. +..+.++.||.|.++.
T Consensus 256 ~~~~~l~~idld~f~~in~~~G~~~gD~lL~~ia~~L~~~~~~-~~~~aRl~gdeF~ill 314 (651)
T PRK13561 256 KQTTALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSVLSP-RMVLAQISGYDFAIIA 314 (651)
T ss_pred CCCeEEEEEECCchHHHHHhhChHHHHHHHHHHHHHHHHhCCC-CcEEEEEeCCEEEEEE
Confidence 4568999999999999999999888888888888888877764 4678899999999987
No 31
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=90.52 E-value=2.5 Score=40.14 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=49.4
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
...+++++||.+|..+-+..+.+.--.+|..+-..+.+.+.. +..+.++.||.|.++..
T Consensus 261 ~~~~l~~idid~f~~in~~~G~~~gD~lL~~va~~l~~~~~~-~~~~aRl~gdeF~vl~~ 319 (660)
T PRK11829 261 DHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDD-SDLLAQLSKTEFAVLAR 319 (660)
T ss_pred CCEEEEEEECCcHHHHHHhhChHHHHHHHHHHHHHHHHhCCC-CcEEEEEeCCEEEEEEc
Confidence 458899999999999999999888888888888887776654 46788999999999883
No 32
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=90.51 E-value=4.3 Score=38.08 Aligned_cols=126 Identities=8% Similarity=0.151 Sum_probs=83.4
Q ss_pred EEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhhhccCC
Q psy14005 48 VTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNIGS 127 (226)
Q Consensus 48 vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~~~~~~ 127 (226)
.++.++.+-||.++++.++..+...+-.-.-+.+.+....|+-+.-++.+|.|+++...
T Consensus 175 ~vl~~i~vDNyDe~t~~~~d~~rs~inS~V~s~l~~~a~~~~if~rr~s~drf~~~~~~--------------------- 233 (655)
T COG3887 175 PVLGIISVDNYDEVTQGLSDSDRSQINSFVTSFLEEWATEYNIFLRRYSSDRFYAFTNY--------------------- 233 (655)
T ss_pred ceEEEEEeccHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhhhheeecCCeEEEEecH---------------------
Confidence 45666667799999998865555544444456677788889999999999999999832
Q ss_pred CCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeCcHHHHHH
Q psy14005 128 FGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTAS 207 (226)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~~Vn~Aa 207 (226)
..-.....-=+.++..+++.. ...+.++.+.||+.+|.--. .-+|+....+-
T Consensus 234 ----------------~~L~~l~~~kF~iLd~~RE~s--~~~~ipLTLSiGvg~g~~~~----------~elg~vA~~~L 285 (655)
T COG3887 234 ----------------KILEKLEEDKFSILDEFREES--SQKNIPLTLSIGVGYGENNL----------IELGEVAQSNL 285 (655)
T ss_pred ----------------HHHHHHHHhhhHHHHHHHHHh--hccCcceEEEEEeccCcccH----------HHHHHHHHHhH
Confidence 233345555566777776654 23346799999999887422 23455555555
Q ss_pred HHhhcCCCCcEEEec
Q psy14005 208 RMESAGDLPSFFIVT 222 (226)
Q Consensus 208 rl~~~a~~g~i~vs~ 222 (226)
+|...-..+||.|-+
T Consensus 286 ~lAlgRGGDQVvIke 300 (655)
T COG3887 286 DLALGRGGDQVVIKE 300 (655)
T ss_pred HHHhccCCceEEEEc
Confidence 564444556666643
No 33
>PRK10060 RNase II stability modulator; Provisional
Probab=90.26 E-value=2.3 Score=40.66 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=48.7
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
....+++++|+.+|..+.+.++...--.+|..+-..+...+.. +..+.++.||.|++++.
T Consensus 264 ~~~~~ll~idld~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~-~d~vaRlggdeF~ill~ 323 (663)
T PRK10060 264 NNQVGIVYLDLDNFKKVNDAYGHMFGDQLLQDVSLAILSCLEE-DQTLARLGGDEFLVLAS 323 (663)
T ss_pred CCcEEEEEEECcchhHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CCEEEEEcCCEEEEEEc
Confidence 3568899999999999888888777777788877777766654 46789999999988873
No 34
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=89.14 E-value=4.8 Score=38.52 Aligned_cols=115 Identities=16% Similarity=0.199 Sum_probs=80.1
Q ss_pred cCcEEEEEEecCCchhhcCCC----C----HHHHHHHHHHHHH-HHHHHHHhc----CcEEEeEeCcEEEEEeCCCCCCC
Q psy14005 45 FDSVTIYFSDIVGFTNISADS----S----PMEVVNMLNTLYK-LFDSRIRKY----DVYKVETIGDAYMVVSGLPQRNG 111 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~----~----~~~~~~~l~~~~~-~~~~~i~~~----gG~i~k~~GD~~la~fg~~~~~~ 111 (226)
...++||-+|.-+.-.+-... + ...+.+.++.||. .+..+++.+ .++++-.-||-++++...
T Consensus 520 ~~~lavl~~D~DnlG~~f~~g~~~~~~~s~~~~lS~~l~~fF~~~v~~i~~~~~~~~~~~~VYaGGDDv~~ig~~----- 594 (648)
T TIGR02578 520 HKKLGVLKMDVDNLGEIFASGLKRPTRISRLATLSRQLELFFKLYLLHLAEDKRNKRNLYVVYSGGDDLFLIGPW----- 594 (648)
T ss_pred CceEEEEEccccCHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCEEEEEEccccEEEEccH-----
Confidence 357899999999976554332 1 2466777777664 466677776 688888889999988733
Q ss_pred CCCCcchhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecC
Q psy14005 112 KSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGT 191 (226)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~ 191 (226)
..+..+|.++.+.++++... ..+.+..||.....
T Consensus 595 -----------------------------------~~~l~~A~~i~~~F~~~~~~----~~~TlSaGi~i~~~------- 628 (648)
T TIGR02578 595 -----------------------------------NAVLELASDIREYFEKFTCR----DKITISAGVVVVSP------- 628 (648)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHhCC----CCeeEEEEEEECCC-------
Confidence 35788999999999876421 34666666654331
Q ss_pred CCCceeEeCcHHHHHHHHhhcCC
Q psy14005 192 TMPRYCLFGDTINTASRMESAGD 214 (226)
Q Consensus 192 ~~~~~~v~G~~Vn~Aarl~~~a~ 214 (226)
+ ..+....++|.+++..||
T Consensus 629 -k---~Pl~~~~~~aee~l~~AK 647 (648)
T TIGR02578 629 -K---YPVYRAARIAEELLEAAK 647 (648)
T ss_pred -C---CCHHHHHHHHHHHHHHhc
Confidence 1 345777888888888776
No 35
>PRK09776 putative diguanylate cyclase; Provisional
Probab=88.21 E-value=5.6 Score=39.87 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=49.6
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
..+.+++++||.+|..+-+..+...--.+|..+-..+.+.+.. +..+.++.||.|.++.
T Consensus 694 ~~~~~l~~idid~fk~in~~~G~~~gd~~L~~~a~~l~~~~~~-~~~~~R~~gdeF~vl~ 752 (1092)
T PRK09776 694 HQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRS-SDVLARLGGDEFGLLL 752 (1092)
T ss_pred CCcEEEEEEECcchHHHHHhhChhhHHHHHHHHHHHHHHhCCC-cCEEEEecCcEEEEEe
Confidence 3568999999999999999998888888888888888777654 4578899999999887
No 36
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=87.51 E-value=4.3 Score=39.14 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=50.2
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
..+.+++++||.+|..+.+.++....-.+|..+...+.+.+.. ++.+.++.||.|+++.
T Consensus 401 ~~~~~l~~i~i~~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~-~~~~~r~~~~eF~il~ 459 (799)
T PRK11359 401 AVSPVVYLIGVDHFQDVIDSLGYAWADQALLEVVNRFREKLKP-DQYLCRIEGTQFVLVS 459 (799)
T ss_pred CCCEEEEEEECCcHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC-CCEEEEEcCCEEEEEE
Confidence 4568999999999999999999888888888888888777653 4778899999998887
No 37
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=83.16 E-value=5 Score=33.48 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=42.5
Q ss_pred EEecCCchhhcCCCCH---HHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 52 FSDIVGFTNISADSSP---MEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 52 f~di~~ft~l~~~~~~---~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
.+.|.||-.|++.++| -++..+-..++..+.+.+..+||.+..+--|.++++-
T Consensus 3 ~i~l~~Y~eWTetlg~~RE~~iQ~lQa~l~~~l~~~~~~~~g~~~~~R~D~~iavt 58 (246)
T PF05165_consen 3 LIQLDNYREWTETLGPDREWDIQTLQARLYADLQQFFSSRGGLVFPTRYDNMIAVT 58 (246)
T ss_dssp EEEETTHHHHCCSSS---HHHHHHHHHHHHHHHHHHHHTTT-EEE-TTSSEEEEE-
T ss_pred eEEecCCccCcCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEeeeeeeeEEEee
Confidence 4678899999999976 3456666888999999999999999999999999987
No 38
>PRK09581 pleD response regulator PleD; Reviewed
Probab=78.13 E-value=40 Score=29.71 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=40.6
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
...+++++++.+|..+....+....-.++..+...+.+.+.. .+.+.+..|+.|+++..
T Consensus 322 ~~~~~l~i~i~~~~~i~~~~g~~~~~~~l~~i~~~l~~~~~~-~~~~~r~~~~~f~ill~ 380 (457)
T PRK09581 322 KPLSLMMIDIDHFKKVNDTYGHDAGDEVLREFAKRLRNNIRG-TDLIARYGGEEFVVVMP 380 (457)
T ss_pred CcEEEEEEecchhhHhHHhhChhhHHHHHHHHHHHHHhhCCC-CcEEEEecCCEEEEEeC
Confidence 346788999998888776666555445555666666665554 34567777788888873
No 39
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=72.47 E-value=17 Score=32.38 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=65.6
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEe--EeCcEEEEEeCCCCCCCCCCCcchhhhhh
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVE--TIGDAYMVVSGLPQRNGKSPGTAISFYIR 123 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k--~~GD~~la~fg~~~~~~~~~~~a~~~~~~ 123 (226)
..-.|+.+||+|+|.....---+++-..=......+..++ ++.-.- |-||+-.++- |
T Consensus 25 ddW~v~vaDIv~ST~AIa~GrYK~VNm~Ga~~IaAv~N~~---~~~~~PFvFGGDGA~~~v--P---------------- 83 (373)
T PF11294_consen 25 DDWFVGVADIVNSTKAIAAGRYKDVNMAGAAVIAAVLNAL---GGRDFPFVFGGDGATFAV--P---------------- 83 (373)
T ss_pred CCcEEEEeehhccHHHHHcCCcccchHHHHHHHHHHHhcc---cCCCCCeEecCCCeEEec--C----------------
Confidence 4568999999999998765433333211122223333333 444333 4488877666 2
Q ss_pred ccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEee-ecc-------eeEEeeecCCCC-
Q psy14005 124 NIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGI-NTG-------PCVAGVVGTTMP- 194 (226)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi-~~G-------~v~~g~vG~~~~- 194 (226)
.+....++.||.-.+..-.- ...+.+|+|+ -.. ++.+.....+..
T Consensus 84 --------------------p~~~~~ar~aLa~~~~~~~~------~f~l~LRvg~VPV~~Ir~~G~dvrvAr~~~S~~~ 137 (373)
T PF11294_consen 84 --------------------PSLLEAAREALAAVRAWVKE------EFDLELRVGLVPVSDIRAEGLDVRVARFAASPNV 137 (373)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHH------hcCCceeEeeeEHHHHHhCCCeEEEEEEccCCCc
Confidence 22333344444433333211 1348888885 222 455666655544
Q ss_pred ce-eEeCcHHHHHHHHhh
Q psy14005 195 RY-CLFGDTINTASRMES 211 (226)
Q Consensus 195 ~~-~v~G~~Vn~Aarl~~ 211 (226)
.| .+.|.....|.++..
T Consensus 138 ~~amf~GgGL~~AE~~mK 155 (373)
T PF11294_consen 138 SYAMFSGGGLAWAEALMK 155 (373)
T ss_pred eEEEEecCcHHHHHHHHh
Confidence 44 445999999998766
No 40
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=50.90 E-value=53 Score=27.20 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=45.2
Q ss_pred EEEEecCCchhhcCCCCH---HHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 50 IYFSDIVGFTNISADSSP---MEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 50 vlf~di~~ft~l~~~~~~---~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
+..+-|.||-.|++.++| -++..+-+.+|..+.+..-.++|.+...--|-++++-
T Consensus 4 it~Iqld~YgpWT~~p~prRE~dlQtlQarlyadl~~~~~~~~g~vf~~RfDnmlait 61 (250)
T COG2429 4 ITLIQLDNYGPWTETPGPRREWDLQTLQARLYADLQKIFGGRGGLVFFTRFDNMLAIT 61 (250)
T ss_pred EEEEEecCcCcccCcCCCchHHHHHHHHHHHHHHHHHHHhccCCeeeeeehhhhhHhh
Confidence 456678899999999875 4556677899999999999999999888888877765
No 41
>PF15530 Toxin_50: Putative toxin 50
Probab=43.53 E-value=15 Score=28.23 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=23.6
Q ss_pred CceeEEEeeecceeEEeeecCCCCceeE
Q psy14005 171 DKLEIRVGINTGPCVAGVVGTTMPRYCL 198 (226)
Q Consensus 171 ~~l~~riGi~~G~v~~g~vG~~~~~~~v 198 (226)
.+....|||.+||.+.|.+|...++|.+
T Consensus 83 ~~a~asiGi~FGPYfpg~~gd~~rdyS~ 110 (168)
T PF15530_consen 83 ARAGASIGISFGPYFPGVFGDPDRDYSI 110 (168)
T ss_pred eeecceEeeecCCcCccccCCCCcccee
Confidence 5566789999999999999988887764
No 42
>KOG1602|consensus
Probab=36.23 E-value=1.4e+02 Score=25.20 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=37.9
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHh-----cCcEEEeEeCcE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRK-----YDVYKVETIGDA 99 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~-----~gG~i~k~~GD~ 99 (226)
-+.||+..-.|.|| .-+++++-.+++-+...+.+..++ -.|..++++||-
T Consensus 81 I~~vT~fAFSieNF-----kRs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdl 135 (271)
T KOG1602|consen 81 IKEVTVFAFSIENF-----KRSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDL 135 (271)
T ss_pred CcEEEEEEEehhhh-----CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcch
Confidence 46789999999999 456788877887777777776655 247778899874
No 43
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.59 E-value=97 Score=26.01 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=31.5
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHH---HHHHHHHHHHHHhcCcEEEeEeCcEE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNML---NTLYKLFDSRIRKYDVYKVETIGDAY 100 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l---~~~~~~~~~~i~~~gG~i~k~~GD~~ 100 (226)
-+.+|+..-.+.||.+ +++++-.++ ..++....+.+.++ |..++++||.=
T Consensus 67 Ik~lTvYaFS~EN~~R-----~~~EV~~Lm~L~~~~l~~~~~~~~~~-~irvr~iGd~~ 119 (250)
T PRK14840 67 IEVLTLFAFSTENFSR-----SKEEVAELFSLFNSQLDSQLPYLHEN-EIRLRCIGDLS 119 (250)
T ss_pred CCEEEEEEeehhhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEeChh
Confidence 4678888888888843 455555444 44444433344444 77789999853
No 44
>PF15617 C-C_Bond_Lyase: C-C_Bond_Lyase of the TIM-Barrel fold
Probab=27.98 E-value=57 Score=28.73 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=32.6
Q ss_pred CceeEEEeeecceeEEeeecCCCC-ceeEeC--cHHHHHHHHhh-cCC-CCcEEEeccccC
Q psy14005 171 DKLEIRVGINTGPCVAGVVGTTMP-RYCLFG--DTINTASRMES-AGD-LPSFFIVTIVMR 226 (226)
Q Consensus 171 ~~l~~riGi~~G~v~~g~vG~~~~-~~~v~G--~~Vn~Aarl~~-~a~-~g~i~vs~~~~~ 226 (226)
.-+.+||| |.=+++.+|-++. +.+++- ..-..-+.+-. .+. ..+..||..||+
T Consensus 165 ~IL~vRIG---gtDl~~~~GiRR~~d~TIYdi~~v~~~I~dIVnvf~r~~~gf~iSgPVwE 222 (345)
T PF15617_consen 165 RILAVRIG---GTDLCGLYGIRRPRDLTIYDITPVADVIADIVNVFGRAGTGFVISGPVWE 222 (345)
T ss_pred eEEEEEee---hHhhhhccccCCCCCCchhhhhhHHHHHHHHHHHhCcccCCceecchHHH
Confidence 34899999 5668889997755 555542 22222233222 222 458899998885
No 45
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.77 E-value=2.7e+02 Score=23.47 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=35.6
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAY 100 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~ 100 (226)
-+.+|+..-.+.||. -+++++-.+++-+...+.+... .++..++++||.=
T Consensus 72 Ik~lTvYaFS~eN~~-----R~~~Ev~~Lm~L~~~~l~~~~~-~~~irv~~iG~~~ 121 (256)
T PRK14828 72 VNVVTLYLLSTDNLG-----RPSEELNPLLDIIEDVVRQLAP-DGRWRVRHVGSLD 121 (256)
T ss_pred CCEEEEEEEEhhhcC-----CCHHHHHHHHHHHHHHHHHHHH-hCCeEEEEECChh
Confidence 467888887777773 3567777777777777777664 4677888888753
No 46
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=26.86 E-value=2.2e+02 Score=23.25 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=31.7
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhc----CcEEEeEeCcE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY----DVYKVETIGDA 99 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~----gG~i~k~~GD~ 99 (226)
-+.+|+..-+..|+. -+++++..+++-+...+.+.+... .|..++++||.
T Consensus 39 I~~lTvYaFS~eN~~-----R~~~EV~~Lm~l~~~~l~~~~~~~~~~~~~irvr~iGd~ 92 (223)
T PF01255_consen 39 IKYLTVYAFSTENWK-----RPKEEVDALMDLFERYLRELIDELNFHKNGIRVRVIGDL 92 (223)
T ss_dssp -SEEEEEEEETTGGG-----S-HHHHHHHHHHHHHHHHHHHHHHH--HTTEEEEEES-G
T ss_pred CCEEEEEEecchhhc-----CCHHHHHHHHHHHHHHHHHHhhhcchhhcCeeEEEEecc
Confidence 467888888888773 346666555555555555555432 58889999987
No 47
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=26.56 E-value=1.4e+02 Score=22.23 Aligned_cols=30 Identities=0% Similarity=-0.017 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcCcEEEeEeCcEEEEE
Q psy14005 74 LNTLYKLFDSRIRKYDVYKVETIGDAYMVV 103 (226)
Q Consensus 74 l~~~~~~~~~~i~~~gG~i~k~~GD~~la~ 103 (226)
+......+.+..+.+||.+.+...+-+++.
T Consensus 81 ~~~V~e~lr~~a~~~ggdi~~l~~n~viIT 110 (124)
T COG2450 81 FERVIEELRDTAEEVGGDIAKLGDNVVIIT 110 (124)
T ss_pred HHHHHHHHHHHHHHhCchhhhhcCCEEEEC
Confidence 455666778899999999998887755543
No 48
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.98 E-value=1.2e+02 Score=25.36 Aligned_cols=50 Identities=10% Similarity=0.270 Sum_probs=31.4
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHH---HHHhcCcEEEeEeCcEE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDS---RIRKYDVYKVETIGDAY 100 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~---~i~~~gG~i~k~~GD~~ 100 (226)
-+.+|+..-.+.||.+ +++++-.+++-+...+.+ .+..+ |..++++||-=
T Consensus 53 I~~vTvYaFS~eN~~R-----~~~EV~~Lm~L~~~~l~~~~~~~~~~-~irv~~iG~~~ 105 (241)
T PRK14842 53 LKNISLYAFSTENWKR-----PITEIRSIFGLLVEFIETRLDTIHAR-GIRIHHSGSRK 105 (241)
T ss_pred CCEEEEEEeehhhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEeChh
Confidence 4678999888888843 455555444444444443 33344 77788999864
No 49
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.94 E-value=2.5e+02 Score=23.47 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=33.7
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAY 100 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~ 100 (226)
-+.+|+..-.+.||. -+++++-.+++-+...+.+..-.-.|..++++||.=
T Consensus 55 I~~lT~YaFS~EN~k-----R~~~Ev~~Lm~l~~~~l~~~~~~~~~irir~iG~~~ 105 (242)
T PRK14838 55 VKFLTLYTFSTENWN-----RPSDEVAALMSLLLDSIEEETFMKNNIRFRIIGDIA 105 (242)
T ss_pred CCEEEEEeechhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChh
Confidence 467888888888883 356676666666665555433233477889999753
No 50
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=24.36 E-value=2.5e+02 Score=23.04 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=33.6
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHh--cCcEEEeEeCcEE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRK--YDVYKVETIGDAY 100 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~--~gG~i~k~~GD~~ 100 (226)
-+.+|+..-.+.||. -+++++..+++-+...+.+.+.. -.|..++++||.=
T Consensus 45 I~~lTvyaFS~eN~~-----R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~iGd~~ 97 (221)
T cd00475 45 VKEVTLYAFSTENWK-----RPKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDLS 97 (221)
T ss_pred CCEEEEEeechhhhC-----cCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChh
Confidence 467888888888884 34666666665555555554433 2377889999864
No 51
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.47 E-value=1.8e+02 Score=24.40 Aligned_cols=50 Identities=14% Similarity=0.276 Sum_probs=31.1
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHh--cCcEEEeEeCcE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRK--YDVYKVETIGDA 99 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~--~gG~i~k~~GD~ 99 (226)
-+.+|+..-.+.||.+ +++++-.+++-+...+.+.+.. -.|..++++||.
T Consensus 59 I~~lTvYaFS~eN~~R-----~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~viGd~ 110 (249)
T PRK14834 59 IGYLTLFAFSSENWSR-----PASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGER 110 (249)
T ss_pred CCEEEEEEEeccccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcCh
Confidence 4678888888888843 4555555555444444443332 237788999984
No 52
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=23.43 E-value=2.1e+02 Score=18.20 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 73 MLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 73 ~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
.+..|...+..++++|||.++-. |+..-.+-|
T Consensus 3 ~~~~Y~~~~~~~l~~~GG~~l~~-~~~~~~leG 34 (65)
T PF07045_consen 3 AYQEYREAVPPILEKYGGRVLAR-GGEPEVLEG 34 (65)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEE-CEEEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE-CCceeEEec
Confidence 46788999999999999997755 666666666
No 53
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.69 E-value=1.5e+02 Score=24.66 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=30.8
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHH---HHHhcCcEEEeEeCcE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDS---RIRKYDVYKVETIGDA 99 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~---~i~~~gG~i~k~~GD~ 99 (226)
-+.+||..-.+.||.+ +++++-.+++-+...+.+ .+.++ |..++++||-
T Consensus 49 I~~lTvyaFS~eN~~R-----~~~Ev~~Lm~L~~~~l~~~~~~~~~~-~irvr~iG~~ 100 (233)
T PRK14833 49 LECLTLYAFSTENWKR-----PKSEVDFLMKLLKKYLKDERSTYLEN-NIRFKAIGDL 100 (233)
T ss_pred CCEEEEeecchhhcCc-----CHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEEeCh
Confidence 4678888888888843 355555554444444433 34444 7888999984
No 54
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.55 E-value=1.7e+02 Score=24.56 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=30.4
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHH---HHHHHHHHHHHHhcCcEEEeEeCcEE
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNML---NTLYKLFDSRIRKYDVYKVETIGDAY 100 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l---~~~~~~~~~~i~~~gG~i~k~~GD~~ 100 (226)
+.+|+..-.+.||.+ +++++..++ ..++....+.+..+ |..++++||.=
T Consensus 68 ~~vTvYaFS~eN~~R-----~~~Ev~~Lm~l~~~~l~~~~~~~~~~-~iri~viG~~~ 119 (251)
T PRK14830 68 KVLTLYAFSTENWKR-----PKDEVKFLMNLPVEFLDKFVPELIEN-NVKVNVIGDTD 119 (251)
T ss_pred CEEEEEEEehhhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEEEEcChh
Confidence 478888877777743 355554444 44444444444445 67789999874
No 55
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.53 E-value=3.5e+02 Score=22.45 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=33.4
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHh--cCcEEEeEeCcEE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRK--YDVYKVETIGDAY 100 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~--~gG~i~k~~GD~~ 100 (226)
-+.+|+..-++.||. -+++|+-.+++-+...+.+.... -.|..++++||.=
T Consensus 48 Ik~lTvYaFS~eN~~-----R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~ 100 (233)
T PRK14841 48 IKYLTAFSFSTENWK-----RPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKE 100 (233)
T ss_pred CCEEEEEeeeHhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChh
Confidence 467899888888884 34666666666655555443332 2477889999853
No 56
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.18 E-value=1.9e+02 Score=23.91 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=31.6
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHH---HHHhcCcEEEeEeCcEE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDS---RIRKYDVYKVETIGDAY 100 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~---~i~~~gG~i~k~~GD~~ 100 (226)
-+.+|+..-.+.||.+ +++++-.+++-+...+.+ .+.++ |..++++||.=
T Consensus 38 I~~lT~yaFS~eN~~R-----~~~Ev~~Lm~l~~~~l~~~~~~~~~~-~i~vr~iG~~~ 90 (229)
T PRK10240 38 IEALTLYAFSSENWNR-----PAQEVSALMELFVWALDSEVKSLHRH-NVRLRIIGDTS 90 (229)
T ss_pred CCEEEEEeeehhhcCc-----CHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEEEeChh
Confidence 4678998888888843 355555555544444444 34434 77889999864
No 57
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.02 E-value=3.4e+02 Score=22.61 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=32.0
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhc--CcEEEeEeCcE
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY--DVYKVETIGDA 99 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~--gG~i~k~~GD~ 99 (226)
-+.+|+..-.+.||. -+++++-.+++-+...+.+.+... .|..++++||.
T Consensus 54 I~~lTvYaFS~EN~~-----R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~ 105 (239)
T PRK14839 54 IGTLTLYAFSSDNWR-----RPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRR 105 (239)
T ss_pred CCEEEEEEechhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 467888888888884 346666555555554444433332 37778999985
Done!