Query psy14005
Match_columns 226
No_of_seqs 155 out of 1067
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:07:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uvj_A Guanylate cyclase solub 100.0 2.8E-38 9.7E-43 259.5 14.6 156 37-226 4-159 (225)
2 1azs_A VC1; complex (lyase/hyd 100.0 6.7E-38 2.3E-42 256.3 15.2 155 38-226 25-179 (220)
3 1ab8_A Adenylyl cyclase; lyase 100.0 2.9E-37 1E-41 252.6 15.6 167 37-226 4-177 (220)
4 2wz1_A Guanylate cyclase solub 100.0 3E-37 1E-41 252.4 13.9 155 37-226 2-163 (219)
5 3et6_A Soluble guanylyl cyclas 100.0 1.3E-36 4.4E-41 243.1 16.8 152 41-226 3-155 (190)
6 2w01_A Adenylate cyclase; guan 100.0 3.5E-36 1.2E-40 244.1 16.4 152 43-226 10-164 (208)
7 3r5g_A CYAB; adenylyl cyclase, 100.0 2.3E-36 7.8E-41 243.1 12.8 154 43-226 5-162 (198)
8 1yk9_A Adenylate cyclase; beta 100.0 2.7E-37 9.3E-42 250.1 6.9 152 41-226 4-155 (204)
9 1wc3_A Adenylate cyclase; solu 100.0 1.1E-35 3.7E-40 243.2 15.4 155 42-226 22-185 (219)
10 1fx2_A Receptor-type adenylate 100.0 5.8E-33 2E-37 228.9 14.4 148 38-226 3-184 (235)
11 1ybt_A Hydrolase, alpha/beta h 100.0 2.4E-33 8.3E-38 223.4 11.5 139 38-226 8-146 (184)
12 3mr7_A Adenylate/guanylate cyc 100.0 8.6E-32 3E-36 215.0 15.4 137 43-226 3-140 (189)
13 1y10_A Hypothetical protein RV 100.0 2.5E-29 8.7E-34 221.6 14.7 133 41-226 209-341 (407)
14 2qv6_A MJ0145, GTP cyclohydrol 96.5 0.028 9.5E-07 46.3 11.2 60 45-104 129-189 (268)
15 3i5c_A Fusion of general contr 96.4 0.0099 3.4E-07 46.1 7.4 61 45-105 59-119 (206)
16 3hva_A Protein FIMX; ggdef dig 96.1 0.02 6.7E-07 43.2 7.5 60 45-105 42-101 (177)
17 3icl_A EAL/ggdef domain protei 96.0 0.018 6.2E-07 43.2 7.0 60 45-105 28-87 (171)
18 3tvk_A DGC, diguanylate cyclas 96.0 0.013 4.4E-07 45.4 6.2 58 46-104 32-89 (179)
19 3mtk_A Diguanylate cyclase/pho 95.8 0.021 7.1E-07 43.4 6.6 59 45-104 34-92 (178)
20 3ign_A Diguanylate cyclase; gg 95.7 0.039 1.3E-06 41.6 7.6 60 45-105 37-96 (177)
21 3pjx_A Cyclic dimeric GMP bind 95.3 0.11 3.7E-06 45.4 10.1 61 45-105 46-109 (430)
22 3qyy_A Response regulator; C-D 95.2 0.045 1.6E-06 40.8 6.6 58 46-104 41-98 (167)
23 3ezu_A Ggdef domain protein; m 95.1 0.13 4.5E-06 43.6 9.7 98 45-183 211-308 (342)
24 3hvw_A Diguanylate-cyclase (DG 94.8 0.026 8.8E-07 42.9 4.1 59 45-105 25-86 (176)
25 3bre_A Probable two-component 94.1 0.19 6.5E-06 42.2 8.4 61 45-105 200-260 (358)
26 1w25_A Stalked-cell differenti 93.0 0.32 1.1E-05 42.5 8.1 59 46-105 318-376 (459)
27 3ung_C CMR2DHD; ferredoxin fol 90.5 2.5 8.7E-05 39.0 11.2 124 46-221 414-572 (693)
28 3hvb_A Protein FIMX; EAL phosp 83.7 0.22 7.4E-06 43.5 0.0 60 45-105 42-101 (437)
29 2qv6_A MJ0145, GTP cyclohydrol 81.8 3 0.0001 34.2 6.1 56 50-105 4-62 (268)
No 1
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=259.47 Aligned_cols=156 Identities=42% Similarity=0.728 Sum_probs=144.0
Q ss_pred ccccCCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCc
Q psy14005 37 DFQVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGT 116 (226)
Q Consensus 37 ~~~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~ 116 (226)
++...+++++++||||+||+|||.+++.++++++..+||.|+..+++++..|||+++|++||++|++||+|....
T Consensus 4 g~~~~~~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~~g~v~k~~GD~~ma~fg~p~~~~----- 78 (225)
T 3uvj_A 4 GQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESD----- 78 (225)
T ss_dssp -CEEEEEEEEEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCEEECCSTTCEEEEESSSSCCT-----
T ss_pred CCccCCcccceEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEeeCcEEEEEECCCCCch-----
Confidence 445566788999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred chhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCce
Q psy14005 117 AISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRY 196 (226)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~ 196 (226)
+++.+|+.||++++..+..++.. .+.++++|||||+|+|++|++|+.+++|
T Consensus 79 ---------------------------~~a~~a~~~al~~~~~~~~~~~~--~~~~l~~riGih~G~v~~G~iG~~~~~~ 129 (225)
T 3uvj_A 79 ---------------------------THAVQIALMALKMMELSDEVMSP--HGEPIKMRIGLHSGSVFAGVVGVKMPRY 129 (225)
T ss_dssp ---------------------------THHHHHHHHHHHHHHHHTTSBCT--TSCBCCEEEEEEEEEEEEEEECC-CCEE
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHhh--cCCceEEEEEEEeccEEEEEecCCCceE
Confidence 89999999999999999988744 3467999999999999999999987899
Q ss_pred eEeCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 197 CLFGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 197 ~v~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
++||++||+|+||++.|++++|+||+++|+
T Consensus 130 ~~~Gd~VN~AaRle~~a~~~~I~vS~~~~~ 159 (225)
T 3uvj_A 130 CLFGNNVTLANKFESCSVPRKINVSPTTYR 159 (225)
T ss_dssp EEESHHHHHHHHHHHTSCTTCEEECHHHHH
T ss_pred EEECcHHHHHHHHHhcCCCCeEEECHHHHH
Confidence 999999999999999999999999999873
No 2
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=100.00 E-value=6.7e-38 Score=256.29 Aligned_cols=155 Identities=26% Similarity=0.495 Sum_probs=143.1
Q ss_pred cccCCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcc
Q psy14005 38 FQVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTA 117 (226)
Q Consensus 38 ~~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a 117 (226)
.+++.++++++||||+||+|||.+++.++|+++..+||.|+..+.+++.+|||+++|++||++|++||.|....
T Consensus 25 ~~l~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~------ 98 (220)
T 1azs_A 25 HKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARA------ 98 (220)
T ss_dssp CCCEEEEEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCS------
T ss_pred ccccccccccEEEEEEEccChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCeEEEEECCCCCCh------
Confidence 34555678999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred hhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCcee
Q psy14005 118 ISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYC 197 (226)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~ 197 (226)
+++.+|++||++|+..+..++.. .+.++.+|||||+|+|++|++|+.+++|+
T Consensus 99 --------------------------~~a~~Av~~Al~m~~~l~~~~~~--~~~~l~irIGI~tG~v~~G~vG~~~~~y~ 150 (220)
T 1azs_A 99 --------------------------DHAHCCVEMGMDMIEAISLVREM--TGVNVNMRVGIHSGRVHCGVLGLRKWQFD 150 (220)
T ss_dssp --------------------------THHHHHHHHHHHHHHHHHHHHHH--HCSCCEEEEEEEEEEEEEEECSSSSCCCE
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHhh--cCCCcEEEEEEEEeEEEEEEeCCCCcEEE
Confidence 89999999999999999887632 23579999999999999999999877999
Q ss_pred EeCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 198 LFGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 198 v~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
+||++||+|+||++.+++|+|+||+++|+
T Consensus 151 v~Gd~VN~AaRLe~~a~~g~IlvS~~t~~ 179 (220)
T 1azs_A 151 VWSNDVTLANHMEAGGKAGRIHITKATLS 179 (220)
T ss_dssp EESHHHHHHHHHHHTCCTTSEEECSTTTT
T ss_pred EEchHHHHHHHHHhcCCCCeEEECHHHHH
Confidence 99999999999999999999999999985
No 3
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=100.00 E-value=2.9e-37 Score=252.62 Aligned_cols=167 Identities=29% Similarity=0.532 Sum_probs=140.8
Q ss_pred ccccCCcccCcEEEEEEecCCchhhcCCCC----HHHHHHHHHHHHHHHHHHHHhc---CcEEEeEeCcEEEEEeCCCCC
Q psy14005 37 DFQVPAENFDSVTIYFSDIVGFTNISADSS----PMEVVNMLNTLYKLFDSRIRKY---DVYKVETIGDAYMVVSGLPQR 109 (226)
Q Consensus 37 ~~~~~~~~~~~vtvlf~di~~ft~l~~~~~----~~~~~~~l~~~~~~~~~~i~~~---gG~i~k~~GD~~la~fg~~~~ 109 (226)
++.++.++++++||||+||+|||.+++.++ |++++.+||.||..+++++.+| ||+++|++||++|++||.|..
T Consensus 4 ~~~~~~~~~~~vtvlF~DI~gfT~l~~~l~~~~~p~~~~~~Ln~~~~~~~~~i~~~~~~g~~~ik~iGD~~ma~fg~p~~ 83 (220)
T 1ab8_A 4 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAI 83 (220)
T ss_dssp ---CCEEEEEEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCCS
T ss_pred CCcccccccCcEEEEEEEccchHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeCceEEEEECCCcc
Confidence 456677889999999999999999999874 7899999999999999999987 899999999999999999874
Q ss_pred CCCCCCcchhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeee
Q psy14005 110 NGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVV 189 (226)
Q Consensus 110 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~v 189 (226)
...... .......+++.+|++||++|+..+..++.. ...++++|||||+|+|++|++
T Consensus 84 ~~~~~~---------------------~~~~~~~~~a~~a~~~Al~~~~~l~~~~~~--~~~~l~~rIGIh~G~v~~G~i 140 (220)
T 1ab8_A 84 PSQEHA---------------------QEPERQYMHIGTMVEFAYALVGKLDAINKH--SFNDFKLRVGINHGPVIAGVI 140 (220)
T ss_dssp CCC-----------------------------CCHHHHHHHHHHHHHHHHHHHHHTT--TTCCCCCEEEEEEEEEEEEEE
T ss_pred cccccc---------------------ccccccHHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEEEEeeeEEEEee
Confidence 210000 000011378999999999999999988743 346799999999999999999
Q ss_pred cCCCCceeEeCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 190 GTTMPRYCLFGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 190 G~~~~~~~v~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
|+.+++|++||++||+|+||++.+++++|+||+++|+
T Consensus 141 G~~r~~y~v~Gd~VN~AaRle~~a~~g~I~vS~~~~~ 177 (220)
T 1ab8_A 141 GAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSL 177 (220)
T ss_dssp CSSSCEEEEESHHHHHHHHHHHTCCTTCEEECHHHHH
T ss_pred cCCceeEEEECcHHHHHHHHHhcCCCCeEEECHHHHH
Confidence 9986699999999999999999999999999999873
No 4
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=100.00 E-value=3e-37 Score=252.36 Aligned_cols=155 Identities=42% Similarity=0.733 Sum_probs=142.2
Q ss_pred ccccCCcccCcEEEEEEecCCchhhcCCCC----HHHHHHHHHHHHHHHHHHHH---hcCcEEEeEeCcEEEEEeCCCCC
Q psy14005 37 DFQVPAENFDSVTIYFSDIVGFTNISADSS----PMEVVNMLNTLYKLFDSRIR---KYDVYKVETIGDAYMVVSGLPQR 109 (226)
Q Consensus 37 ~~~~~~~~~~~vtvlf~di~~ft~l~~~~~----~~~~~~~l~~~~~~~~~~i~---~~gG~i~k~~GD~~la~fg~~~~ 109 (226)
++...+++++++||||+||+|||.+++.++ |+++..+||.|+..+.+++. .|||+++|++||++|++||.|..
T Consensus 2 G~~~~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~g~~~k~~GD~~ma~fg~p~~ 81 (219)
T 2wz1_A 2 KRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEP 81 (219)
T ss_dssp ---CCCEEEEEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSC
T ss_pred CCccCccceeeEEEEEEEccCcHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCEEEEeecCCEEEEEECCCCC
Confidence 345667788999999999999999999998 99999999999999999999 89999999999999999999987
Q ss_pred CCCCCCcchhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeee
Q psy14005 110 NGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVV 189 (226)
Q Consensus 110 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~v 189 (226)
.. +|+.+|++||++|+..+..++.. ..++++|||||+|+|++|++
T Consensus 82 ~~--------------------------------~~a~~A~~~Al~~~~~~~~~~~~---~~~l~~rIGi~~G~v~~G~i 126 (219)
T 2wz1_A 82 CI--------------------------------HHARSICHLALDMMEIAGQVQVD---GESVQITIGIHTGEVVTGVI 126 (219)
T ss_dssp CT--------------------------------THHHHHHHHHHHHHHHHTTCEET---TEECCEEEEEEEEEEEEEEE
T ss_pred Ch--------------------------------hHHHHHHHHHHHHHHHHHHHhcc---CCceEEEEEEEEEEEEEEEe
Confidence 76 89999999999999999988643 56799999999999999999
Q ss_pred cCCCCceeEeCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 190 GTTMPRYCLFGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 190 G~~~~~~~v~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
|+.+++|++||++||+|+||++.+++++|+||+++|+
T Consensus 127 G~~~~~~~v~Gd~VN~AaRLe~~a~~~~IlvS~~~~~ 163 (219)
T 2wz1_A 127 GQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYR 163 (219)
T ss_dssp CSSSCEEEEESHHHHHHHHHHHTSCTTSEEEEHHHHH
T ss_pred CCCceEEEEECHHHHHHHHHHhcCCCCeEEECHHHHH
Confidence 9986699999999999999999999999999999873
No 5
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=100.00 E-value=1.3e-36 Score=243.14 Aligned_cols=152 Identities=45% Similarity=0.748 Sum_probs=139.3
Q ss_pred CCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhc-CcEEEeEeCcEEEEEeCCCCCCCCCCCcchh
Q psy14005 41 PAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY-DVYKVETIGDAYMVVSGLPQRNGKSPGTAIS 119 (226)
Q Consensus 41 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~-gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~ 119 (226)
++++++++||||+||+|||.+++.++++++..+||.|+..+.+++.+| ||+++|++||++|++||.|....
T Consensus 3 ~~~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~vk~~GD~~~a~fg~~~~~~-------- 74 (190)
T 3et6_A 3 PAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCD-------- 74 (190)
T ss_dssp CCEEEEEEEEEEEEETTHHHHTTTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCS--------
T ss_pred CccccceEEEEEeEecChhHhHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeCCEEEEEECCCCCch--------
Confidence 346789999999999999999999999999999999999999999999 77778999999999999998876
Q ss_pred hhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEe
Q psy14005 120 FYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLF 199 (226)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~ 199 (226)
+++.+|++||++|+..+.+++.. .+.++++|||||+|++++|++|..+++|++|
T Consensus 75 ------------------------~~~~~a~~~al~~~~~~~~~~~~--~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~ 128 (190)
T 3et6_A 75 ------------------------DHADVLLEFALRMHEEASRVASS--LGEPVRIRVGMHSGPVVAGVVGRKMPRFXLF 128 (190)
T ss_dssp ------------------------THHHHHHHHHHHHHHHHHTSCCC-----CCCEEEEEEEEEEEEEEECSSSCEEEEE
T ss_pred ------------------------hHHHHHHHHHHHHHHHHHHHHhc--cCCCceEEEEEEeccEEEEecCCCcceEEec
Confidence 89999999999999999987643 3467999999999999999999887899999
Q ss_pred CcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 200 GDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 200 G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
|++||+|+||++.+++|+|+||+++|+
T Consensus 129 G~~Vn~Aarl~~~a~~~~I~vs~~~~~ 155 (190)
T 3et6_A 129 GDTVNTASRMESHGEAGQIHISEACYC 155 (190)
T ss_dssp SHHHHHHHHHHHTSCTTSEEEEHHHHH
T ss_pred CcchhHHHHHHhcCCCCeEEECHHHHH
Confidence 999999999999999999999999873
No 6
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=100.00 E-value=3.5e-36 Score=244.14 Aligned_cols=152 Identities=26% Similarity=0.373 Sum_probs=139.2
Q ss_pred cccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhh
Q psy14005 43 ENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYI 122 (226)
Q Consensus 43 ~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~ 122 (226)
.+++++||||+||+|||.+++.++|+++..+||.|+..+.+++.+|||+++|++||++|++||.|....
T Consensus 10 ~e~~~vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~----------- 78 (208)
T 2w01_A 10 GDRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAPTSQQ----------- 78 (208)
T ss_dssp CEEEEEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCT-----------
T ss_pred CeEEEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCEEEEEECCCCCCh-----------
Confidence 457899999999999999999999999999999999999999999999999999999999999998766
Q ss_pred hccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCC--CCCCCceeEEEeeecceeEEeeecCCCC-ceeEe
Q psy14005 123 RNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIP--HRPNDKLEIRVGINTGPCVAGVVGTTMP-RYCLF 199 (226)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~--~~~~~~l~~riGi~~G~v~~g~vG~~~~-~~~v~ 199 (226)
+++.+|++||++|+..+..++.. .....++++|||||+|++++|++|+.++ +|+++
T Consensus 79 ---------------------~~a~~Av~~Al~~~~~l~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~r~~~~v~ 137 (208)
T 2w01_A 79 ---------------------DDALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSEKRTKYGVV 137 (208)
T ss_dssp ---------------------THHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEEEEECSSCEEEEEE
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeEEEEEEeCCCCeeEEEEE
Confidence 89999999999999999876532 1223569999999999999999998766 99999
Q ss_pred CcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 200 GDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 200 G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
|++||+|+||++.+.+++|+||+++|+
T Consensus 138 G~~Vn~AaRl~~~a~~~~I~vs~~~~~ 164 (208)
T 2w01_A 138 GAQVNLTYRIESYTTGGQIFISSTTLE 164 (208)
T ss_dssp SHHHHHHHHHHHTCCTTCEEEEHHHHH
T ss_pred CHHHHHHHHHHccCCCCeEEECHHHHH
Confidence 999999999999999999999999873
No 7
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=100.00 E-value=2.3e-36 Score=243.08 Aligned_cols=154 Identities=28% Similarity=0.441 Sum_probs=138.6
Q ss_pred cccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhh
Q psy14005 43 ENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYI 122 (226)
Q Consensus 43 ~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~ 122 (226)
.+++++||||+||+|||.+++.++|+++..+||.|+..+.+++.+|||+++|++||++|++||.|....
T Consensus 5 ~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~----------- 73 (198)
T 3r5g_A 5 TQRKKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGDPSTQG----------- 73 (198)
T ss_dssp CEEEEEEEEEEEEETHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEETTEEEEEESSSSCSC-----------
T ss_pred ceEEEEEEEEEEccccchhhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeeCCEEEEEECCCcccc-----------
Confidence 457899999999999999999999999999999999999999999999999999999999999987652
Q ss_pred hccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCC---CCCCCceeEEEeeecceeEEeeecCCCC-ceeE
Q psy14005 123 RNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIP---HRPNDKLEIRVGINTGPCVAGVVGTTMP-RYCL 198 (226)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~---~~~~~~l~~riGi~~G~v~~g~vG~~~~-~~~v 198 (226)
+.+++.+|+.+|++|+..+..++.. .....++++|||||+|++++|++|+..+ +|++
T Consensus 74 -------------------~~~~a~~a~~~al~i~~~~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~~v 134 (198)
T 3r5g_A 74 -------------------AKKDAVAAVSMGIAMRKHMKVLRQQWRAQGITKPLEIRMGINTGYCTVGNFGADTRMDYTI 134 (198)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCCEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred -------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEEEEEEEeCCCcceEEEE
Confidence 0278899999999999998876532 1223579999999999999999999866 9999
Q ss_pred eCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 199 FGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 199 ~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
||++||+|+||++.+++|+|+||+++|+
T Consensus 135 ~G~~Vn~Aarl~~~a~~~~I~vs~~~~~ 162 (198)
T 3r5g_A 135 IGREVNLASRLESASEAGEILISHETYS 162 (198)
T ss_dssp ESHHHHHHHHHHHHCCTTCEEEEHHHHH
T ss_pred ECcHHHHHHHHHhhCCCCcEEECHHHHH
Confidence 9999999999999999999999999873
No 8
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.7e-37 Score=250.06 Aligned_cols=152 Identities=38% Similarity=0.686 Sum_probs=140.5
Q ss_pred CCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhh
Q psy14005 41 PAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISF 120 (226)
Q Consensus 41 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~ 120 (226)
.+++++++||||+||+|||.+++.++++++..+||.|+..+.+++.+|||+++|++||++|++||.|....
T Consensus 4 ~~~~~~~vtvlf~DI~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~gG~v~k~~GD~~ma~fg~p~~~~--------- 74 (204)
T 1yk9_A 4 IADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRP--------- 74 (204)
T ss_dssp --CCCSCEEEEEEEESCSSCSSCCCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCT---------
T ss_pred CccccCcEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCeEEEEECCCCCCh---------
Confidence 45678999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred hhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeC
Q psy14005 121 YIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFG 200 (226)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G 200 (226)
+++.+|++||++|+..+..++.. .+.++++|||||+|++++|++|+.+.+|++||
T Consensus 75 -----------------------~~a~~A~~~Al~~~~~~~~~~~~--~~~~l~~rIGI~tG~v~~g~vG~~r~~~~v~G 129 (204)
T 1yk9_A 75 -----------------------DHTQALADFALDMTNVAAQLKDP--RGNPVPLRVGLATGPVVAGVVGSRRFRYCVWG 129 (204)
T ss_dssp -----------------------THHHHHHTHHHHHHHHTTTCCSS--SCCCCCEEEEEEEECEEECCCCSSSCCCCEEE
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHhc--cCCCceEEEEEEeeEEEEEEecCCCceEEEEC
Confidence 89999999999999999988744 34679999999999999999999666999999
Q ss_pred cHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 201 DTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 201 ~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
++||+|+||++.+++++|+||+++|+
T Consensus 130 ~~Vn~AaRle~~a~~g~I~vs~~~~~ 155 (204)
T 1yk9_A 130 DAVNVASRMESTDSVGQIQVPDEVYE 155 (204)
T ss_dssp HHHHHTTHHHHSCSTTCEEBCHHHHH
T ss_pred hHHHHHHHHHhcCCCCeEEECHHHHH
Confidence 99999999999999999999999873
No 9
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=100.00 E-value=1.1e-35 Score=243.16 Aligned_cols=155 Identities=25% Similarity=0.377 Sum_probs=138.7
Q ss_pred CcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhh
Q psy14005 42 AENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFY 121 (226)
Q Consensus 42 ~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~ 121 (226)
..+.+++||||+||+|||.+++.++|+++..+||.|+..+.+++.+|||+++|++||++|++||.|....
T Consensus 22 ~~e~~~vtvlF~DI~gfT~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~---------- 91 (219)
T 1wc3_A 22 RPEPRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMS---------- 91 (219)
T ss_dssp CCEEEEEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCC----------
T ss_pred CCceeEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCeEEEEECCCCCCC----------
Confidence 3457899999999999999999999999999999999999999999999999999999999999987533
Q ss_pred hhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCC--------CCCCCceeEEEeeecceeEEeeecCCC
Q psy14005 122 IRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIP--------HRPNDKLEIRVGINTGPCVAGVVGTTM 193 (226)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~--------~~~~~~l~~riGi~~G~v~~g~vG~~~ 193 (226)
+.+++.+|++||++|++.+..++.. .....++++|||||+|+|++|++|+.+
T Consensus 92 --------------------~~~~a~~Av~~Al~~~~~l~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~~~ 151 (219)
T 1wc3_A 92 --------------------PSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGSQE 151 (219)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTCCCCEEEEEEEEEEEEEEEEEETT
T ss_pred --------------------ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccEEEEEEEeceEEEEEcCCCC
Confidence 0267899999999999998876521 123467999999999999999999866
Q ss_pred C-ceeEeCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 194 P-RYCLFGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 194 ~-~~~v~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
+ +|++||++||+|+||++.|++++|+||+++|+
T Consensus 152 r~~y~v~Gd~VN~AaRLe~~a~~g~IlvS~~~~~ 185 (219)
T 1wc3_A 152 RSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQ 185 (219)
T ss_dssp EEEEEEESHHHHHHHHHHHHSCTTEEEEEHHHHT
T ss_pred eeEEEEECHHHHHHHHHHhcCCCCeEEECHHHHH
Confidence 5 99999999999999999999999999999874
No 10
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=100.00 E-value=5.8e-33 Score=228.92 Aligned_cols=148 Identities=28% Similarity=0.403 Sum_probs=128.2
Q ss_pred cccCCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcc
Q psy14005 38 FQVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTA 117 (226)
Q Consensus 38 ~~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a 117 (226)
...+++.++++||||+||+|||.+++.. ++++..+||.|+..+++++.+|||+++|++||++|++||.|
T Consensus 3 ~~~~~~~~~~vtvlF~DI~gfT~l~~~~-~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~ma~fg~p---------- 71 (235)
T 1fx2_A 3 NRAPKEPTDPVTLIFTDIESSTALWAAH-PDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSP---------- 71 (235)
T ss_dssp GGSCCCTTSCEEEEEEEETTHHHHHHHC-TTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCH----------
T ss_pred CcCCCCCCCcEEEEEEeccChHHHHHHC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCCeEEEEeCCH----------
Confidence 3456677899999999999999999986 89999999999999999999999999999999999999663
Q ss_pred hhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCC---------------------CC-------
Q psy14005 118 ISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPH---------------------RP------- 169 (226)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~---------------------~~------- 169 (226)
.+|+++|++++..+.+.+++. .+
T Consensus 72 -----------------------------~~A~~~Al~i~~~l~~~~w~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~ 122 (235)
T 1fx2_A 72 -----------------------------FAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDP 122 (235)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHSCCSCSHHHHHHHHHHHHHHHHCSSCCCSSTTSCH
T ss_pred -----------------------------HHHHHHHHHHHHHHHhCCCchhHhhhhhhhhhhhccccccccCcccccccc
Confidence 247788888887775543221 01
Q ss_pred ------CCceeEEEeeecceeEEeeecCCCCceeEeCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 170 ------NDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 170 ------~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
..++++|||||+|++++|++|. +.+|++||++||+|+||+++|++|+|+||+++|+
T Consensus 123 ~~~~~~~~~l~~riGIh~G~v~~G~~G~-~~~~~v~Gd~VN~AaRle~~a~~g~IlvS~~~~~ 184 (235)
T 1fx2_A 123 EVYSRLWNGLRVRVGIHTGLCDIRHDEV-TKGYDYYGRTPNMAARTESVANGGQVLMTHAAYM 184 (235)
T ss_dssp HHHHHHCCSCCEEEEEEEECCEEEECTT-SSSEEEESHHHHHHHHHHHTCCTTCEEEEHHHHH
T ss_pred ccccccccCcEEEEEEEeeEEEEEeccc-ccceEEECHHHHHHHHHHhhcCCCEEEECHHHHH
Confidence 1469999999999999999998 5689999999999999999999999999999873
No 11
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=100.00 E-value=2.4e-33 Score=223.37 Aligned_cols=139 Identities=18% Similarity=0.258 Sum_probs=125.4
Q ss_pred cccCCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcc
Q psy14005 38 FQVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTA 117 (226)
Q Consensus 38 ~~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a 117 (226)
...+..+++++||||+||+|||.+++.++++++..+||.|+..+.+++.+|||+++|++||++|++||.|
T Consensus 8 ~~~~~~~~~~~tvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~v~k~~GD~~ma~f~~p---------- 77 (184)
T 1ybt_A 8 HHHGSAERMLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSP---------- 77 (184)
T ss_dssp -----CEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESCH----------
T ss_pred CCCCCCceEEEEEEEEECcCcHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeEeCCEEEEEeCCH----------
Confidence 3455667889999999999999999999999999999999999999999999999999999999999653
Q ss_pred hhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCcee
Q psy14005 118 ISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYC 197 (226)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~ 197 (226)
.+|++||++|+..+..++ +++|||||+|++++|++|.. |+
T Consensus 78 -----------------------------~~A~~~Al~~~~~l~~~~--------l~~riGi~~G~v~~g~ig~~---~~ 117 (184)
T 1ybt_A 78 -----------------------------SAAIACADDIVDAVAALG--------IEVRIGIHAGEVEVRDASHG---TD 117 (184)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHTTT--------CCEEEEEEEEEEEEEECSSC---EE
T ss_pred -----------------------------HHHHHHHHHHHHHHHhcC--------CcEEEEEEEeEEEEEecCCC---ce
Confidence 368999999999998764 89999999999999998874 99
Q ss_pred EeCcHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 198 LFGDTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 198 v~G~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
+||++||+|+||++.|++|+|+||+++|+
T Consensus 118 ~~G~~Vn~AaRl~~~a~~g~IlvS~~~~~ 146 (184)
T 1ybt_A 118 VAGVAVHIGARVCALAGPSEVLVSSTVRD 146 (184)
T ss_dssp EESHHHHHHHHHHHHSCTTCEEEEHHHHH
T ss_pred EECcHHHHHHHHHhcCCCCEEEECHHHHH
Confidence 99999999999999999999999999873
No 12
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=99.98 E-value=8.6e-32 Score=215.03 Aligned_cols=137 Identities=19% Similarity=0.293 Sum_probs=122.9
Q ss_pred cccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHH-HHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhh
Q psy14005 43 ENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKL-FDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFY 121 (226)
Q Consensus 43 ~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~-~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~ 121 (226)
.+++++||||+||+|||.+++..+++.+ ..|+.++.. +.+++.+|||+++|++||++|++||
T Consensus 3 ~e~r~vtvlf~Di~gft~l~~~~~~~~~-~~l~~~~~~~~~~~i~~~~G~v~k~~GD~~~a~f~---------------- 65 (189)
T 3mr7_A 3 AERRLCAILAADMAGYSRLMERNETDVL-NRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD---------------- 65 (189)
T ss_dssp CEEEEEEEEEEEECCCCGGGCCCCHHHH-HHHHHHHHHTHHHHHHHTTCEEEEEETTEEEEEES----------------
T ss_pred CcEEEEEEEEEEchhhHHHHhhCCHHHH-HHHHHHHHHHHHHHHHHcCCEEEEEeCCEEEEEeC----------------
Confidence 4578999999999999999999988776 667777766 9999999999999999999999994
Q ss_pred hhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeCc
Q psy14005 122 IRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGD 201 (226)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G~ 201 (226)
++.+|+.||++|+..+..++.....+.++++|||||+|++++| +|+++|+
T Consensus 66 -----------------------~~~~A~~~Al~i~~~l~~~~~~~~~~~~l~~riGi~~G~v~~g-------~~~~~G~ 115 (189)
T 3mr7_A 66 -----------------------TAQAALRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGD 115 (189)
T ss_dssp -----------------------SHHHHHHHHHHHHHHHHHHTTTSCGGGCCCEEEEEEEEEEEEC-------SSCEESH
T ss_pred -----------------------CHHHHHHHHHHHHHHHHHHhhhcccCCceeEEEEEEEEEEEEE-------CCeEECh
Confidence 4568999999999999998865555577999999999999998 6899999
Q ss_pred HHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 202 TINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 202 ~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
+||+|+||++.|++|+|+||+++|+
T Consensus 116 ~Vn~AaRl~~~a~~~~I~vs~~~~~ 140 (189)
T 3mr7_A 116 AVNVAARLEAISEPGAICVSDIVHQ 140 (189)
T ss_dssp HHHHHHHHHHHSCTTCEEEEHHHHH
T ss_pred HHHHHHHHHhhCCCCeEEECHHHHH
Confidence 9999999999999999999999873
No 13
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=99.96 E-value=2.5e-29 Score=221.61 Aligned_cols=133 Identities=26% Similarity=0.363 Sum_probs=118.9
Q ss_pred CCcccCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhh
Q psy14005 41 PAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISF 120 (226)
Q Consensus 41 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~ 120 (226)
+.++++++||||+||+|||.+++.++|+++..+||.|+..++.++. |||+++|++||+||++||.|
T Consensus 209 ~~~~~~~vTVlFaDIvgFT~ls~~~~p~evv~lLn~~~~~~~~i~~-~~g~~iKtiGDa~mavfg~p------------- 274 (407)
T 1y10_A 209 PLPGARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTA-PPVWFIKTIGDAVMLVCPDP------------- 274 (407)
T ss_dssp CCTTCEEEEEEEEEECSBCTTSCBCCHHHHHHHHHHHHHHHHHHCC-TTCEEEEEETTEEEEEESSH-------------
T ss_pred cccceeeEEEEEEEccCchHHHhhCCHHHHHHHHHHHHHHHHHHHH-cCcEEEEEecceEEEEECCH-------------
Confidence 3346789999999999999999999999999999999998877665 89999999999999999764
Q ss_pred hhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecceeEEeeecCCCCceeEeC
Q psy14005 121 YIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFG 200 (226)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v~G 200 (226)
..|++||++|+..+...+ .++++|||||+|+|++|. ||+||
T Consensus 275 --------------------------~~a~~~Al~m~~~l~~~~------~~l~iRIGIhtG~Vv~Gv-------ydv~G 315 (407)
T 1y10_A 275 --------------------------APLLDTVLKLVEVVDTDN------NFPRLRAGVASGMAVSRA-------GDWFG 315 (407)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTCT------TSCCEEEEEEEEEEEEET-------TEEEE
T ss_pred --------------------------HHHHHHHHHHHHHHHHhC------CCceEEEEEEEEEEEEec-------CccCC
Confidence 247899999999988743 347899999999999983 79999
Q ss_pred cHHHHHHHHhhcCCCCcEEEeccccC
Q psy14005 201 DTINTASRMESAGDLPSFFIVTIVMR 226 (226)
Q Consensus 201 ~~Vn~Aarl~~~a~~g~i~vs~~~~~ 226 (226)
++||+|+||++.+++|+|+||+++|+
T Consensus 316 dtVN~AsRLes~a~~g~I~vS~~t~~ 341 (407)
T 1y10_A 316 SPVNVASRVTGVARPGAVLVADSVRE 341 (407)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEHHHHH
T ss_pred CHHHHHHHHHhcCCCCeEEECHHHHH
Confidence 99999999999999999999999873
No 14
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=96.54 E-value=0.028 Score=46.34 Aligned_cols=60 Identities=22% Similarity=0.175 Sum_probs=55.0
Q ss_pred cCcEEEEEEecCCchh-hcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 45 FDSVTIYFSDIVGFTN-ISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~-l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
..+++|..+||.++|. ..+..++-+.......++..+.+.++++||.....-||.|+++.
T Consensus 129 dsqIaVahiDI~d~t~~~t~~~s~yd~~~~~l~l~~~Ll~y~~~igG~lf~iGgdny~ift 189 (268)
T 2qv6_A 129 DGYVQIAHIDINNITGTLTDIVSAYDTYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPS 189 (268)
T ss_dssp SCCEEEEEEEETTHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTTCCCEEEETTEEEEEC
T ss_pred cCceEEEEEEecCccccccccCChHHHHHHHHHHHHHHHHHHHHhCCEEEEECCCEEEEEe
Confidence 4679999999999998 66667899999999999999999999999999999999999988
No 15
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=96.40 E-value=0.0099 Score=46.08 Aligned_cols=61 Identities=8% Similarity=0.069 Sum_probs=50.7
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
..+.+++++||.+|..+.+..+.+..-.+|..+-..+.+.+...+..+.++.||.|++++.
T Consensus 59 ~~~~~l~~idid~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~~~~~~~R~~~d~F~il~~ 119 (206)
T 3i5c_A 59 QSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLP 119 (206)
T ss_dssp TCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEECcchhHHHhccChhHHHHHHHHHHHHHHHhcCCCCcEEEEecCCeEEEEEC
Confidence 4568999999999999999888888877787777777666655677888999999999883
No 16
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=96.09 E-value=0.02 Score=43.21 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=50.6
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
..+.+++++||.+|..+.+..+.+..-.+|..+-..+.+.+.. +..+.++.||.|++++.
T Consensus 42 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~-~~~~~R~~~d~F~ill~ 101 (177)
T 3hva_A 42 RKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGE-EADLARFGDSIFAALFK 101 (177)
T ss_dssp CCCEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GCEEEECSSSEEEEEEE
T ss_pred CCCeEEEEEeCCCHHHHHHHhCchhHHHHHHHHHHHHHHhCCC-CceEEEecCCeEEEEeC
Confidence 4578999999999999998888888778888888888777765 56788999999998883
No 17
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=96.04 E-value=0.018 Score=43.15 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=50.8
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
....+++++||.+|..+.+..+.+..-.+|..+-..+.+.+.. +..+.++.||.|+++..
T Consensus 28 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~-~~~~~R~~~d~F~ill~ 87 (171)
T 3icl_A 28 GNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRD-GDTVARIGGDKFTILLN 87 (171)
T ss_dssp TSCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHSCT-TCEEEEETTTEEEEEES
T ss_pred CCcEEEEEEEChHhhHHHHHhChHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCEEEEEec
Confidence 3568999999999999999999888888888888888777654 57889999999988874
No 18
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=96.01 E-value=0.013 Score=45.39 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=47.1
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
.+++++++||-+|..+-+.++...-=.+|..+-..+.+.+.. ++.+.++-||.|++++
T Consensus 32 ~~~~l~~iDiD~FK~INd~~Gh~~GD~vL~~va~~L~~~~~~-~~~v~R~gGDEF~ill 89 (179)
T 3tvk_A 32 LNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRD-YETVYRYGGEEFIIIV 89 (179)
T ss_dssp SEEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHTSCT-TSCEEECSSSEEEEEE
T ss_pred CCEEEEEEECCCCcHHHhccCchhHHHHHHHHHHHhHhcCCc-ccEEEEccCCEEEEEc
Confidence 468999999999999988888776667777777777666643 5678999999999988
No 19
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=95.83 E-value=0.021 Score=43.39 Aligned_cols=59 Identities=7% Similarity=0.042 Sum_probs=50.8
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
....+++++||.+|..+.+..+.+..-.+|..+-..+.+.+.. +..+.++.||.|+++.
T Consensus 34 ~~~~~l~~idid~f~~in~~~G~~~gd~lL~~ia~~L~~~~~~-~~~~~R~~~d~F~il~ 92 (178)
T 3mtk_A 34 CIDTYLIFLEVRDLEKLNVTYGYDLVDELIIHISKRIKDIAGE-GNKAFKIGFDRFAIIC 92 (178)
T ss_dssp CTTEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHCS-SSEEEEEETTEEEEEE
T ss_pred CCceEEEEEEhhHhhHHHHHhChHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCEEEEEe
Confidence 4578999999999999999999888888888888888777654 6788999999999987
No 20
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=95.68 E-value=0.039 Score=41.56 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=48.5
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
....+++++||.+|..+.+..+.+..-.+|..+-..+.+.+. .+..+.++.||.|+++..
T Consensus 37 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~L~~~~~-~~~~~~R~~~d~F~ill~ 96 (177)
T 3ign_A 37 GQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIR-QSDSAGRYGGEEFGIILP 96 (177)
T ss_dssp CCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTSC-TTSEEEECSSSEEEEEEE
T ss_pred CCceEEEEEEchhhHHHHHhhChHHHHHHHHHHHHHHHHhCC-CCCEEEEecCCeEEEEeC
Confidence 356899999999999999988888777777777777766554 356788999999998873
No 21
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=95.30 E-value=0.11 Score=45.37 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=53.3
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhc---CcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY---DVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~---gG~i~k~~GD~~la~fg 105 (226)
....+++++||.+|..+-+.++.+.--.+|..+-..+.+.+..+ +..+.++.||.|+++..
T Consensus 46 ~~~~~l~~idid~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~~~~~~~~v~R~ggdeF~ill~ 109 (430)
T 3pjx_A 46 ASSGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECAKYPETQNLVTRIRGGEFAVLAP 109 (430)
T ss_dssp CSCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTSGGGTTCEEEEETTEEEEEEE
T ss_pred cCceEEEEEEchhhhHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCcCceEEEecCceEEEEeC
Confidence 35678999999999999999998888888999988888888875 67899999999998873
No 22
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=95.25 E-value=0.045 Score=40.81 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=47.2
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEe
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVS 104 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~f 104 (226)
.+++++++||.+|..+.+..+.+.--.+|..+-..+.+.+. .+..+.++.||.|+++.
T Consensus 41 ~~~~l~~idid~f~~in~~~G~~~gd~~L~~ia~~L~~~~~-~~~~~~R~~~deF~il~ 98 (167)
T 3qyy_A 41 WPFVLFVLDMDNLKPINDRFGHLAGDRVLVRLVESAYGWLG-AQDWIGRWGGDEFLIGV 98 (167)
T ss_dssp CCCEEEEEEESSHHHHHHHHCHHHHHHHHHHHHHHHTTTCC-TTCEEEEEETTEEEEEE
T ss_pred CcEEEEEEechhhhHHHhhcCcHHHHHHHHHHHHHHHHhcC-CCCEEEeecCceEEEEc
Confidence 46899999999999999888888777777777666665553 35788999999998887
No 23
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Probab=95.07 E-value=0.13 Score=43.62 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=65.6
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeCCCCCCCCCCCcchhhhhhc
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAISFYIRN 124 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg~~~~~~~~~~~a~~~~~~~ 124 (226)
...++++++||.+|..+-+.++.+.--.+|..+-..+.+.+.. +..+.++.||.|+++... .
T Consensus 211 ~~~~all~idId~fk~INd~~G~~~gD~lL~~va~~L~~~~~~-~d~v~R~ggdeF~ill~~--~--------------- 272 (342)
T 3ezu_A 211 GSNVGIMLIDLDYFKLVGDNYGHQTGDRILQLVAETITSHLRR-SDVVGRYDGDEFVVYLSP--V--------------- 272 (342)
T ss_dssp TCEEEEEEEEEEECCCCC-----CHHHHHHHHHHHHHHHTCCT-TCEEEECSSSEEEEEESS--C---------------
T ss_pred CCcEEEEEEECCcHHHHHHhhChHHHHHHHHHHHHHHHHHCCC-CcEEEEEcCCEEEEEECC--C---------------
Confidence 3568999999999999999998887777788777777766644 568889999999988832 1
Q ss_pred cCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeEEEeeecce
Q psy14005 125 IGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEIRVGINTGP 183 (226)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~riGi~~G~ 183 (226)
....+...+-.+...+..... ...++.+.||+..|.
T Consensus 273 --------------------~~~~~~~~~~~l~~~l~~~~~---~~~~~~~siGva~~~ 308 (342)
T 3ezu_A 273 --------------------EPASLRTVAENLRRSIEEESA---RMVPVTASIGVAQGI 308 (342)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHTT---TTCCEEEEEEEEEEE
T ss_pred --------------------CHHHHHHHHHHHHHHHhcccC---CccceEEEEEEEEEe
Confidence 122344455556655555432 235688888888664
No 24
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=94.80 E-value=0.026 Score=42.88 Aligned_cols=59 Identities=5% Similarity=-0.035 Sum_probs=50.8
Q ss_pred cCcEEEEEEec---CCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDI---VGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di---~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
.++.+++++|| .+|..+.+..+.+.--.+|..+-..+.+.+.. ..+.++.||.|+++..
T Consensus 25 ~~~~~l~~i~i~~id~f~~in~~~G~~~gD~~L~~ia~~L~~~~~~--~~v~R~~~deF~ill~ 86 (176)
T 3hvw_A 25 DGALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAELPD--FTLYKISPTRFGLLLP 86 (176)
T ss_dssp HSEEEEEEEECSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCTT--SCEEEEETTEEEEEEE
T ss_pred CCCceEEEEEecCHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHCCC--CeEEEecCCEEEEEeC
Confidence 35688999999 88888888888888888888888888888877 7899999999999883
No 25
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=94.11 E-value=0.19 Score=42.19 Aligned_cols=61 Identities=8% Similarity=0.069 Sum_probs=46.0
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
....+++++||.+|..+-+..+....-.+|..+...+.+.+...++.+.++.||.|++++.
T Consensus 200 ~~~~~l~~idid~fk~ind~~G~~~gD~~L~~va~~l~~~~~~~~~~~~R~ggdeF~ill~ 260 (358)
T 3bre_A 200 QSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLP 260 (358)
T ss_dssp TCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEchhhhHHHHhcChHHHHHHHHHHHHHHHHhcCCcCcEEEEecCCeEEEEeC
Confidence 3468999999999988877777666666666666665554444567888999999998873
No 26
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=93.00 E-value=0.32 Score=42.45 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 46 DSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
..++++++||.+|..+-+.++...--.+|..+-..+.+.+. ....+.++-||.|+++..
T Consensus 318 ~~~~l~~idid~fk~iNd~~Gh~~gD~~L~~~a~~l~~~~~-~~d~~~R~ggdeF~il~~ 376 (459)
T 1w25_A 318 DPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVR-AIDLPCRYGGEEFVVIMP 376 (459)
T ss_dssp CCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSC-TTSEEEECSSSEEEEEET
T ss_pred CcEEEEEEEchhhchhhhccChhhHHHHHHHHHHHHHHhCC-CcCEEEEEcCceEEEEeC
Confidence 56899999999999999999988888888888888877764 356889999999999983
No 27
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=90.54 E-value=2.5 Score=39.02 Aligned_cols=124 Identities=10% Similarity=0.031 Sum_probs=77.5
Q ss_pred CcEEEEEEecCCchhhcCCC--------------------------C---HHHHHHHHHHHHH-HHHHHHHhcCcEEEeE
Q psy14005 46 DSVTIYFSDIVGFTNISADS--------------------------S---PMEVVNMLNTLYK-LFDSRIRKYDVYKVET 95 (226)
Q Consensus 46 ~~vtvlf~di~~ft~l~~~~--------------------------~---~~~~~~~l~~~~~-~~~~~i~~~gG~i~k~ 95 (226)
.-.+||-+|.-+.-.+.... + ...+.+.|+.|+. .+..++ +++|.++-.
T Consensus 414 ~YyAvL~mDGD~MGk~lsg~~~~~~~~~~h~~i~e~l~~~~~~k~~TpsrhaaLSRaL~~Ff~~~V~~Iv-k~~G~vIYa 492 (693)
T 3ung_C 414 KYYAILVMDGDDMGKVISGEVLGEISTRIHPNIRDYVEIPEAKYYSTPQVHVAISQALANFSIREVRSVV-KDEGLLIYA 492 (693)
T ss_dssp CEEEEEEEEESSCC--------------------------------CHHHHHHHHHHHHHHHHTHHHHHH-TTSSEEEEE
T ss_pred CeEEEEEcccccHHHHhcCCCcccchhhcchhhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhCcEEEEE
Confidence 44889999988876655421 1 2566788999985 677777 599999999
Q ss_pred eCcEEEEEeCCCCCCCCCCCcchhhhhhccCCCCCCCCCCccCCCCccchHHHHHHHHHHHHHHhhhccCCCCCCCceeE
Q psy14005 96 IGDAYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPHRPNDKLEI 175 (226)
Q Consensus 96 ~GD~~la~fg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~i~~~~~~~~~~~~~~~~l~~ 175 (226)
-||-++++.+ ...|..+|.+++..++...........+.+
T Consensus 493 GGDDfL~llP----------------------------------------~d~AlelAe~LRe~F~~~~t~~~~~~~ITi 532 (693)
T 3ung_C 493 GGDDVLAILP----------------------------------------VDKALEVAYKIRKEFGKSFENGSLLPGWKL 532 (693)
T ss_dssp CSSEEEEEEE----------------------------------------HHHHHHHHHHHHHHHHTC---------CCE
T ss_pred cCceEEEEee----------------------------------------HHHHHHHHHHHHHHHHHHhccccCCCCceE
Confidence 9999999982 245788888888888763211111233556
Q ss_pred EEeeecceeEEeeecCCCCceeEeCcHHHHHHHHhh-cCCC----CcEEEe
Q psy14005 176 RVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMES-AGDL----PSFFIV 221 (226)
Q Consensus 176 riGi~~G~v~~g~vG~~~~~~~v~G~~Vn~Aarl~~-~a~~----g~i~vs 221 (226)
.+||.... .. ..+...+..|..++. .||. +.|.++
T Consensus 533 SaGVAi~~-------~k----~Pl~~~le~AdeALy~~AK~~~GRNrVaI~ 572 (693)
T 3ung_C 533 SAGILIVH-------YK----HPLYDALEKARDLLNNKAKNVPGKDTLAIG 572 (693)
T ss_dssp EEEEEEEE-------TT----SCHHHHHHHHHHHHHHTGGGSTTCCEEEEE
T ss_pred EEEEEEcc-------CC----CCHHHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 66655432 11 234667888888877 7665 445544
No 28
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=83.68 E-value=0.22 Score=43.50 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=0.0
Q ss_pred cCcEEEEEEecCCchhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 45 FDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 45 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
....+++++||.+|..+-+.++.+.--.+|..+-..+.+.+.. +..+.++.||.|.+++.
T Consensus 42 ~~~~~l~~idid~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~-~~~v~R~ggdeF~ill~ 101 (437)
T 3hvb_A 42 RKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGE-EADLARFGDSIFAALFK 101 (437)
T ss_dssp -------------------------------------------------------------
T ss_pred CCceEEEEEEcCcHHHHHHhhCchhHHHHHHHHHHHHHHhCCC-CceEEEecCCEEEEEeC
Confidence 4568999999999999999988877777777777777766654 56778899999988873
No 29
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=81.79 E-value=3 Score=34.21 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=47.9
Q ss_pred EEEEecCCchhhcCCCCH---HHHHHHHHHHHHHHHHHHHhcCcEEEeEeCcEEEEEeC
Q psy14005 50 IYFSDIVGFTNISADSSP---MEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSG 105 (226)
Q Consensus 50 vlf~di~~ft~l~~~~~~---~~~~~~l~~~~~~~~~~i~~~gG~i~k~~GD~~la~fg 105 (226)
+..+.|.||-.|+..++| -++..+-..++..+.+.+..+||.+..+--|.++++-.
T Consensus 4 it~i~i~~Y~~WT~t~g~~RE~~lQ~lQs~l~~~l~~~~~~~~g~~f~~R~D~~ia~tn 62 (268)
T 2qv6_A 4 ITVIQIDNYGPWTVTPNPRRESDLQALQSRLYADLNLMFGAHKGLVFYTRFDNLIAITN 62 (268)
T ss_dssp EEEEEETTHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHTTTCEEECTTSSEEEEECT
T ss_pred EEEEEEcCcccccCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCEEeecccceEEEEeC
Confidence 456788999999998865 45666778889999999999999999999999999983
Done!